![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Last modified 3 years ago
#7235 feedback defect
Crash using color panel
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x0000700019c04000 (most recent call first):
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x000000010b99c600 (most recent call first):
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 190000,
"procLaunch" : "2022-07-05 16:31:51.4179 +0900",
"procRole" : "Foreground",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,1",
"procStartAbsTime" : 96137189303298,
"coalitionID" : 464,
"osVersion" : {
"train" : "macOS 12.4",
"build" : "21F79",
"releaseType" : "User"
},
"captureTime" : "2022-07-07 14:17:57.9240 +0900",
"incident" : "FB45BB80-02FE-4CE4-862E-810326C52301",
"bug_type" : "309",
"pid" : 34380,
"procExitAbsTime" : 198072885975077,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "41A65D72-BF6F-AB83-4222-DE724F7A2F41",
"wakeTime" : 15594,
"bridgeVersion" : {"build":"19P5071","train":"6.5"},
"sleepWakeUUID" : "F96C4FDD-BE46-4C0C-9B25-823A179228EB",
"sip" : "enabled",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
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"faultingThread" : 0,
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===== Log before crash start =====
Startup Messages
---
warning | Custom presets folder '/Users/ich/Charisma/S-PRED' does not exist
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 2hyy
2hyy title:
Human Abl kinase domain in complex with imatinib (STI571, Glivec) [more
info...]
Chain information for 2hyy #1
---
Chain | Description | UniProt
A B C D | Proto-oncogene tyrosine-protein kinase ABL1 | ABL1_HUMAN
Non-standard residues in 2hyy #1
---
STI — 4-(4-methyl-piperazin-1-ylmethyl)-N-[4-methyl-3-(4-pyridin-3-yl-
pyrimidin-2-ylamino)-phenyl]-benzamide (sti-571;imatinib)
2hyy mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
3| author_defined_assembly
4| author_defined_assembly
> sym #1 assembly 1 copies true
> close #1
> view
> select :sti
37 atoms, 41 bonds, 1 residue, 1 model selected
> hide ~sel
> view
> view sel
> color sel & C salmoon
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color sel & C salmon
> hbonds reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
2.1 2hyy
356 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A HOH 1 O /A HOH 169 O no hydrogen 3.017 N/A
/A HOH 1 O /A ASP 421 OD1 no hydrogen 2.912 N/A
/A HOH 2 O /A HOH 106 O no hydrogen 2.560 N/A
/A HOH 2 O /A ARG 328 O no hydrogen 2.609 N/A
/A HOH 2 O /A CYS 330 O no hydrogen 2.711 N/A
/A HOH 17 O /A HOH 108 O no hydrogen 2.600 N/A
/A HOH 17 O /A ARG 473 O no hydrogen 2.667 N/A
/A HOH 17 O /A TRP 476 O no hydrogen 3.453 N/A
/A HOH 20 O /A TYR 435 O no hydrogen 2.552 N/A
/A HOH 21 O /A HOH 176 O no hydrogen 3.360 N/A
/A HOH 21 O /A SER 446 O no hydrogen 2.774 N/A
/A HOH 23 O /A GLU 355 OE2 no hydrogen 2.633 N/A
/A HOH 37 O /A ASP 381 OD2 no hydrogen 2.924 N/A
/A HOH 39 O /A HOH 169 O no hydrogen 3.069 N/A
/A HOH 39 O /A SER 417 O no hydrogen 3.494 N/A
/A HOH 39 O /A SER 420 OG no hydrogen 2.418 N/A
/A HOH 39 O /A ASP 421 OD1 no hydrogen 2.959 N/A
/A HOH 46 O /A HOH 187 O no hydrogen 2.588 N/A
/A HOH 50 O /A HOH 130 O no hydrogen 3.179 N/A
/A HOH 52 O /A HOH 141 O no hydrogen 2.517 N/A
/A HOH 52 O /A TYR 320 O no hydrogen 2.597 N/A
/A HOH 52 O /A ASN 322 O no hydrogen 2.497 N/A
/A HOH 54 O /A HOH 109 O no hydrogen 2.508 N/A
/A HOH 54 O /A ILE 403 O no hydrogen 2.664 N/A
/A HOH 54 O /A THR 406 O no hydrogen 2.784 N/A
/A HOH 65 O /A GLU 431 OE1 no hydrogen 2.718 N/A
/A HOH 65 O /A MET 437 O no hydrogen 2.948 N/A
/A HOH 66 O /A HOH 157 O no hydrogen 2.710 N/A
/A HOH 68 O /A THR 389 O no hydrogen 2.583 N/A
/A HOH 73 O /A THR 392 OG1 no hydrogen 2.829 N/A
/A HOH 75 O /A LEU 452 O no hydrogen 3.078 N/A
/A HOH 75 O /A ASP 455 OD1 no hydrogen 3.511 N/A
/A HOH 81 O /A MET 290 O no hydrogen 3.024 N/A
/A HOH 81 O /A ILE 293 O no hydrogen 3.093 N/A
/A HOH 81 O /A VAL 299 O no hydrogen 3.402 N/A
/A HOH 82 O /A GLN 477 OE1 no hydrogen 2.888 N/A
/A HOH 82 O /A ASP 482 OD2 no hydrogen 2.957 N/A
/A HOH 84 O /A ASP 391 O no hydrogen 3.189 N/A
/A HOH 84 O /A THR 392 O no hydrogen 3.170 N/A
/A HOH 84 O /A THR 394 OG1 no hydrogen 2.760 N/A
/A HOH 87 O /A HIS 361 O no hydrogen 2.921 N/A
/A HOH 87 O /A ASP 381 OD1 no hydrogen 3.131 N/A
/A HOH 87 O /A ASP 381 OD2 no hydrogen 2.478 N/A
/A HOH 88 O /A GLU 462 OE1 no hydrogen 2.446 N/A
/A HOH 89 O /A TYR 440 OH no hydrogen 2.703 N/A
/A HOH 93 O /A HIS 396 ND1 no hydrogen 3.195 N/A
/A HOH 94 O /A ASP 363 OD2 no hydrogen 2.633 N/A
/A HOH 94 O /A ASP 381 OD1 no hydrogen 2.666 N/A
/A HOH 96 O /A HOH 127 O no hydrogen 2.706 N/A
/A HOH 96 O /A PRO 441 O no hydrogen 2.745 N/A
/A HOH 104 O /A HOH 181 O no hydrogen 2.623 N/A
/A HOH 106 O /A HOH 2 O no hydrogen 2.560 N/A
/A HOH 106 O /A LEU 327 O no hydrogen 2.793 N/A
/A HOH 106 O /A ARG 328 O no hydrogen 3.092 N/A
/A HOH 108 O /A HOH 17 O no hydrogen 2.600 N/A
/A HOH 108 O /A ASP 455 OD1 no hydrogen 3.381 N/A
/A HOH 109 O /A HOH 54 O no hydrogen 2.508 N/A
/A HOH 109 O /A LYS 404 O no hydrogen 2.721 N/A
/A HOH 109 O /A TYR 440 OH no hydrogen 2.767 N/A
/A HOH 110 O /A GLY 442 O no hydrogen 2.470 N/A
/A HOH 127 O /A HOH 96 O no hydrogen 2.706 N/A
/A HOH 127 O /A TYR 456 OH no hydrogen 2.818 N/A
/A HOH 130 O /A HOH 50 O no hydrogen 3.179 N/A
/A HOH 130 O /A PRO 439 O no hydrogen 2.532 N/A
/A HOH 133 O /A GLU 334 OE1 no hydrogen 2.855 N/A
/A HOH 141 O /A HOH 52 O no hydrogen 2.517 N/A
/A HOH 141 O /A ASP 325 OD2 no hydrogen 3.453 N/A
/A HOH 144 O /A SER 385 O no hydrogen 2.580 N/A
/A HOH 144 O /A MET 388 O no hydrogen 2.639 N/A
/A HOH 146 O /A GLU 286 OE2 no hydrogen 2.707 N/A
/A HOH 146 O /A ASP 381 O no hydrogen 2.670 N/A
/A HOH 157 O /A HOH 66 O no hydrogen 2.710 N/A
/A HOH 157 O /A GLU 431 OE1 no hydrogen 2.696 N/A
/A HOH 169 O /A HOH 1 O no hydrogen 3.017 N/A
/A HOH 169 O /A HOH 39 O no hydrogen 3.069 N/A
/A HOH 169 O /A ARG 362 O no hydrogen 3.192 N/A
/A HOH 176 O /A HOH 21 O no hydrogen 3.360 N/A
/A HOH 176 O /A GLU 450 OE2 no hydrogen 2.686 N/A
/A HOH 181 O /A HOH 104 O no hydrogen 2.623 N/A
/A HOH 181 O /A THR 389 O no hydrogen 3.465 N/A
/A HOH 181 O /A THR 392 OG1 no hydrogen 2.640 N/A
/A HOH 187 O /A HOH 46 O no hydrogen 2.588 N/A
/A HOH 188 O /A ASP 363 OD1 no hydrogen 2.552 N/A
/A HOH 188 O /A LEU 364 O no hydrogen 2.989 N/A
/A HOH 197 O /A SER 349 O no hydrogen 3.208 N/A
/A HOH 197 O /A SER 349 OG no hydrogen 3.298 N/A
/A ASP 241 N /A GLU 238 O no hydrogen 2.572 N/A
/A THR 243 N /A VAL 260 O no hydrogen 3.422 N/A
/A LYS 245 N /A GLU 258 O no hydrogen 2.948 N/A
/A LYS 247 NZ /A GLU 255 OE2 no hydrogen 3.132 N/A
/A LEU 248 N /A VAL 256 O no hydrogen 3.124 N/A
/A GLY 251 N /A LEU 248 O no hydrogen 3.050 N/A
/A GLN 252 N /A GLY 249 O no hydrogen 3.327 N/A
/A GLN 252 NE2 /A ASN 322 OD1 no hydrogen 3.260 N/A
/A GLY 254 N /A GLY 251 O no hydrogen 3.375 N/A
/A VAL 256 N /A GLY 254 O no hydrogen 2.736 N/A
/A TYR 257 N /A VAL 270 O no hydrogen 2.833 N/A
/A TYR 257 OH /A GLU 255 OE1 no hydrogen 2.573 N/A
/A GLU 258 N /A HIS 246 O no hydrogen 2.662 N/A
/A GLY 259 N /A VAL 268 O no hydrogen 2.973 N/A
/A VAL 260 N /A THR 243 O no hydrogen 3.337 N/A
/A TRP 261 N /A LEU 266 O no hydrogen 2.370 N/A
/A LYS 262 N /A ASP 241 O no hydrogen 2.990 N/A
/A LYS 262 NZ /A THR 240 O no hydrogen 2.759 N/A
/A TYR 264 N /A TRP 261 O no hydrogen 2.775 N/A
/A SER 265 N /A LYS 262 O no hydrogen 2.941 N/A
/A LEU 266 N /A TRP 261 O no hydrogen 3.266 N/A
/A VAL 268 N /A GLY 259 O no hydrogen 2.716 N/A
/A ALA 269 N /A THR 315 O no hydrogen 3.073 N/A
/A VAL 270 N /A TYR 257 O no hydrogen 2.858 N/A
/A LYS 271 N /A ILE 313 O no hydrogen 2.748 N/A
/A LYS 271 NZ /A GLU 286 OE1 no hydrogen 3.004 N/A
/A THR 272 N /A GLU 255 O no hydrogen 2.777 N/A
/A LEU 273 N /A PHE 311 O no hydrogen 3.072 N/A
/A PHE 283 N /A GLU 279 O no hydrogen 3.250 N/A
/A LEU 284 N /A VAL 280 O no hydrogen 3.246 N/A
/A LEU 284 N /A GLU 281 O no hydrogen 3.324 N/A
/A LYS 285 N /A GLU 281 O no hydrogen 3.233 N/A
/A GLU 286 N /A GLU 282 O no hydrogen 3.129 N/A
/A ALA 287 N /A PHE 283 O no hydrogen 3.377 N/A
/A ALA 288 N /A LEU 284 O no hydrogen 3.187 N/A
/A VAL 289 N /A LYS 285 O no hydrogen 2.820 N/A
/A MET 290 N /A GLU 286 O no hydrogen 2.954 N/A
/A LYS 291 N /A ALA 287 O no hydrogen 3.008 N/A
/A GLU 292 N /A VAL 289 O no hydrogen 2.908 N/A
/A ILE 293 N /A MET 290 O no hydrogen 3.227 N/A
/A LYS 294 N /A TYR 353 OH no hydrogen 2.902 N/A
/A HIS 295 NE2 /A SER 349 OG no hydrogen 3.076 N/A
/A ASN 297 ND2 /A VAL 377 O no hydrogen 3.054 N/A
/A LEU 298 N /A HIS 295 O no hydrogen 3.228 N/A
/A VAL 299 N /A VAL 379 O no hydrogen 2.923 N/A
/A GLN 300 N /A GLU 316 OE1 no hydrogen 2.790 N/A
/A LEU 301 N /A HOH 81 O no hydrogen 3.257 N/A
/A LEU 302 N /A ILE 314 O no hydrogen 2.750 N/A
/A GLY 303 N /A ILE 314 O no hydrogen 3.182 N/A
/A VAL 304 N /A TRP 235 O no hydrogen 3.024 N/A
/A CYS 305 N /A TYR 312 O no hydrogen 3.104 N/A
/A CYS 305 SG /A MET 237 O no hydrogen 3.333 N/A
/A THR 306 N /A GLU 236 OE2 no hydrogen 3.069 N/A
/A THR 306 OG1 /A GLU 236 OE2 no hydrogen 2.958 N/A
/A TYR 312 N /A CYS 305 O no hydrogen 3.198 N/A
/A ILE 313 N /A LYS 271 O no hydrogen 2.914 N/A
/A ILE 314 N /A GLY 303 O no hydrogen 2.728 N/A
/A THR 315 N /A ALA 269 O no hydrogen 3.025 N/A
/A THR 315 OG1 /A GLU 316 O no hydrogen 3.003 N/A
/A GLU 316 N /A GLN 300 O no hydrogen 3.058 N/A
/A MET 318 N /A STI 600 N3 no hydrogen 2.937 N/A
/A THR 319 OG1 /A GLU 373 OE1 no hydrogen 3.130 N/A
/A TYR 320 N /A VAL 371 O no hydrogen 2.919 N/A
/A TYR 320 OH /A GLU 373 OE2 no hydrogen 3.217 N/A
/A GLY 321 N /A MET 318 O no hydrogen 3.098 N/A
/A LEU 323 N /A CYS 369 O no hydrogen 2.739 N/A
/A TYR 326 N /A ASN 322 O no hydrogen 2.999 N/A
/A LEU 327 N /A LEU 323 O no hydrogen 2.862 N/A
/A ARG 328 N /A LEU 324 O no hydrogen 3.213 N/A
/A ARG 328 N /A ASP 325 O no hydrogen 2.957 N/A
/A ARG 328 NE /A GLY 436 O no hydrogen 2.658 N/A
/A ARG 328 NH2 /A GLY 436 O no hydrogen 2.848 N/A
/A GLU 329 N /A ASP 325 O no hydrogen 2.842 N/A
/A GLU 329 N /A TYR 326 O no hydrogen 3.276 N/A
/A CYS 330 SG /A LEU 327 O no hydrogen 3.416 N/A
/A ASN 331 N /A HOH 133 O no hydrogen 3.208 N/A
/A ASN 331 ND2 /A HOH 180 O no hydrogen 3.017 N/A
/A ARG 332 NE /A HOH 106 O no hydrogen 2.854 N/A
/A ARG 332 NH2 /A HOH 106 O no hydrogen 3.232 N/A
/A GLN 333 N /A ASN 331 OD1 no hydrogen 2.766 N/A
/A GLU 334 N /A ASN 331 OD1 no hydrogen 3.193 N/A
/A VAL 335 N /A ASN 331 O no hydrogen 2.760 N/A
/A ASN 336 N /A GLU 334 O no hydrogen 2.917 N/A
/A VAL 339 N /A ASN 336 OD1 no hydrogen 3.332 N/A
/A LEU 340 N /A ASN 336 O no hydrogen 2.904 N/A
/A LEU 341 N /A ALA 337 O no hydrogen 3.129 N/A
/A TYR 342 N /A VAL 338 O no hydrogen 2.908 N/A
/A MET 343 N /A VAL 339 O no hydrogen 2.765 N/A
/A ALA 344 N /A LEU 340 O no hydrogen 3.017 N/A
/A THR 345 N /A LEU 341 O no hydrogen 2.903 N/A
/A THR 345 OG1 /A LEU 341 O no hydrogen 2.816 N/A
/A GLN 346 N /A TYR 342 O no hydrogen 3.196 N/A
/A GLN 346 NE2 /A TYR 342 O no hydrogen 3.023 N/A
/A GLN 346 NE2 /A HIS 375 O no hydrogen 2.903 N/A
/A ILE 347 N /A MET 343 O no hydrogen 3.299 N/A
/A SER 348 N /A ALA 344 O no hydrogen 3.068 N/A
/A SER 348 OG /A ALA 344 O no hydrogen 3.221 N/A
/A SER 348 OG /A THR 345 O no hydrogen 2.559 N/A
/A SER 348 OG /A HIS 490 ND1 no hydrogen 3.369 N/A
/A SER 349 N /A THR 345 O no hydrogen 2.902 N/A
/A SER 349 OG /A HOH 197 O no hydrogen 3.298 N/A
/A SER 349 OG /A HIS 295 NE2 no hydrogen 3.076 N/A
/A ALA 350 N /A GLN 346 O no hydrogen 2.994 N/A
/A MET 351 N /A ILE 347 O no hydrogen 2.884 N/A
/A GLU 352 N /A SER 348 O no hydrogen 2.762 N/A
/A TYR 353 N /A SER 349 O no hydrogen 3.088 N/A
/A LEU 354 N /A ALA 350 O no hydrogen 3.238 N/A
/A GLU 355 N /A MET 351 O no hydrogen 2.883 N/A
/A LYS 356 N /A GLU 352 O no hydrogen 3.091 N/A
/A LYS 357 N /A TYR 353 O no hydrogen 2.980 N/A
/A ASN 358 N /A GLU 355 O no hydrogen 2.823 N/A
/A PHE 359 N /A LEU 354 O no hydrogen 2.721 N/A
/A HIS 361 N /A ASP 421 OD2 no hydrogen 2.749 N/A
/A HIS 361 NE2 /A ALA 380 O no hydrogen 2.574 N/A
/A ARG 362 N /A ASP 421 OD1 no hydrogen 2.872 N/A
/A ASP 363 N /A HIS 361 ND1 no hydrogen 3.003 N/A
/A LEU 364 N /A HOH 1 O no hydrogen 2.777 N/A
/A ALA 366 N /A GLU 431 OE2 no hydrogen 2.901 N/A
/A ARG 367 N /A HOH 157 O no hydrogen 2.780 N/A
/A ARG 367 NE /A TYR 393 OH no hydrogen 2.949 N/A
/A ARG 367 NH1 /A HOH 66 O no hydrogen 2.793 N/A
/A ARG 367 NH2 /A ASP 363 OD1 no hydrogen 2.855 N/A
/A ARG 367 NH2 /A TYR 393 OH no hydrogen 3.526 N/A
/A ASN 368 N /A ALA 365 O no hydrogen 2.985 N/A
/A ASN 368 ND2 /A HOH 94 O no hydrogen 3.064 N/A
/A ASN 368 ND2 /A ASP 363 O no hydrogen 2.798 N/A
/A ASN 368 ND2 /A ASP 363 OD2 no hydrogen 3.143 N/A
/A CYS 369 N /A ALA 366 O no hydrogen 3.030 N/A
/A CYS 369 SG /A ALA 365 O no hydrogen 3.679 N/A
/A LEU 370 N /A LYS 378 O no hydrogen 2.797 N/A
/A VAL 371 N /A GLY 321 O no hydrogen 2.830 N/A
/A GLY 372 N /A LEU 376 O no hydrogen 2.670 N/A
/A HIS 375 NE2 /A GLU 334 OE2 no hydrogen 3.055 N/A
/A VAL 377 N /A GLN 346 OE1 no hydrogen 2.687 N/A
/A LYS 378 N /A LEU 370 O no hydrogen 2.887 N/A
/A LYS 378 NZ /A GLU 316 OE1 no hydrogen 2.328 N/A
/A LYS 378 NZ /A GLU 316 OE2 no hydrogen 2.592 N/A
/A VAL 379 N /A ASN 297 O no hydrogen 2.940 N/A
/A ALA 380 N /A ASN 368 O no hydrogen 2.778 N/A
/A ASP 381 N /A STI 600 O29 no hydrogen 2.981 N/A
/A PHE 382 N /A ASN 368 OD1 no hydrogen 3.082 N/A
/A GLY 383 N /A ASP 381 OD1 no hydrogen 3.347 N/A
/A MET 388 N /A LEU 384 O no hydrogen 2.927 N/A
/A ASP 391 N /A HOH 104 O no hydrogen 2.891 N/A
/A THR 392 N /A HOH 181 O no hydrogen 3.010 N/A
/A THR 392 OG1 /A HOH 73 O no hydrogen 2.829 N/A
/A THR 392 OG1 /A HOH 181 O no hydrogen 2.640 N/A
/A TYR 393 OH /A ASP 363 OD1 no hydrogen 3.222 N/A
/A TYR 393 OH /A ASP 363 OD2 no hydrogen 2.475 N/A
/A THR 394 N /A PHE 401 O no hydrogen 2.898 N/A
/A THR 394 OG1 /A HOH 84 O no hydrogen 2.760 N/A
/A HIS 396 N /A ALA 399 O no hydrogen 2.568 N/A
/A ALA 399 N /A HIS 396 O no hydrogen 2.976 N/A
/A LYS 400 NZ /A HOH 144 O no hydrogen 3.054 N/A
/A PHE 401 N /A THR 394 O no hydrogen 2.865 N/A
/A ILE 403 N /A HOH 84 O no hydrogen 3.238 N/A
/A LYS 404 NZ /A HOH 130 O no hydrogen 2.500 N/A
/A LYS 404 NZ /A PRO 439 O no hydrogen 3.358 N/A
/A LYS 404 NZ /A TYR 440 O no hydrogen 2.669 N/A
/A LYS 404 NZ /A ILE 443 O no hydrogen 3.057 N/A
/A TRP 405 N /A PRO 402 O no hydrogen 2.996 N/A
/A TRP 405 NE1 /A GLU 431 OE2 no hydrogen 3.015 N/A
/A THR 406 N /A ILE 403 O no hydrogen 3.214 N/A
/A THR 406 OG1 /A PRO 402 O no hydrogen 2.575 N/A
/A GLU 409 N /A GLU 409 OE1 no hydrogen 2.962 N/A
/A SER 410 N /A ALA 407 O no hydrogen 3.044 N/A
/A SER 410 OG /A LYS 415 O no hydrogen 2.731 N/A
/A LEU 411 N /A ALA 407 O no hydrogen 3.031 N/A
/A ALA 412 N /A PRO 408 O no hydrogen 2.591 N/A
/A TYR 413 N /A GLU 409 O no hydrogen 2.819 N/A
/A ASN 414 N /A SER 410 O no hydrogen 3.148 N/A
/A ASN 414 ND2 /A HOH 150 O no hydrogen 3.141 N/A
/A LYS 415 N /A GLU 409 O no hydrogen 3.403 N/A
/A SER 417 N /A SER 420 OG no hydrogen 3.047 N/A
/A LYS 419 NZ /A HOH 23 O no hydrogen 2.778 N/A
/A LYS 419 NZ /A ARG 483 O no hydrogen 2.713 N/A
/A LYS 419 NZ /A PRO 484 O no hydrogen 3.187 N/A
/A SER 420 N /A SER 417 O no hydrogen 2.856 N/A
/A SER 420 OG /A HOH 39 O no hydrogen 2.418 N/A
/A SER 420 OG /A SER 417 O no hydrogen 2.807 N/A
/A ASP 421 N /A SER 417 O no hydrogen 3.273 N/A
/A VAL 422 N /A ILE 418 O no hydrogen 2.965 N/A
/A TRP 423 N /A LYS 419 O no hydrogen 3.155 N/A
/A TRP 423 NE1 /A HOH 109 O no hydrogen 2.893 N/A
/A ALA 424 N /A SER 420 O no hydrogen 2.924 N/A
/A PHE 425 N /A ASP 421 O no hydrogen 2.866 N/A
/A GLY 426 N /A VAL 422 O no hydrogen 3.149 N/A
/A VAL 427 N /A TRP 423 O no hydrogen 3.367 N/A
/A VAL 427 N /A ALA 424 O no hydrogen 3.089 N/A
/A LEU 428 N /A ALA 424 O no hydrogen 2.873 N/A
/A LEU 429 N /A PHE 425 O no hydrogen 2.731 N/A
/A TRP 430 N /A GLY 426 O no hydrogen 3.383 N/A
/A TRP 430 NE1 /A GLU 459 O no hydrogen 3.035 N/A
/A GLU 431 N /A VAL 427 O no hydrogen 2.981 N/A
/A ILE 432 N /A LEU 428 O no hydrogen 3.021 N/A
/A ALA 433 N /A LEU 429 O no hydrogen 3.079 N/A
/A THR 434 N /A TRP 430 O no hydrogen 3.142 N/A
/A THR 434 OG1 /A TRP 430 O no hydrogen 2.820 N/A
/A THR 434 OG1 /A GLU 431 O no hydrogen 3.382 N/A
/A TYR 435 N /A ILE 432 O no hydrogen 3.040 N/A
/A TYR 435 OH /A VAL 335 O no hydrogen 2.596 N/A
/A GLY 436 N /A GLU 431 O no hydrogen 2.616 N/A
/A MET 437 N /A THR 434 OG1 no hydrogen 3.036 N/A
/A SER 438 N /A HOH 71 O no hydrogen 3.171 N/A
/A TYR 440 OH /A HOH 89 O no hydrogen 2.703 N/A
/A TYR 440 OH /A HOH 109 O no hydrogen 2.767 N/A
/A GLY 442 N /A HOH 50 O no hydrogen 2.975 N/A
/A ILE 443 N /A TYR 440 O no hydrogen 3.090 N/A
/A SER 446 OG /A ASP 444 OD2 no hydrogen 2.991 N/A
/A GLN 447 N /A ASP 444 O no hydrogen 2.948 N/A
/A GLN 447 NE2 /A ASP 444 OD2 no hydrogen 3.137 N/A
/A VAL 448 N /A LEU 445 O no hydrogen 3.433 N/A
/A GLU 450 N /A HOH 21 O no hydrogen 2.862 N/A
/A LEU 451 N /A GLN 447 O no hydrogen 3.056 N/A
/A LEU 452 N /A VAL 448 O no hydrogen 2.948 N/A
/A GLU 453 N /A TYR 449 O no hydrogen 2.851 N/A
/A LYS 454 N /A GLU 450 O no hydrogen 3.074 N/A
/A ASP 455 N /A LEU 452 O no hydrogen 2.977 N/A
/A TYR 456 N /A LEU 451 O no hydrogen 2.752 N/A
/A TYR 456 OH /A HOH 127 O no hydrogen 2.818 N/A
/A ARG 457 NE /A TRP 476 O no hydrogen 3.053 N/A
/A ARG 457 NH1 /A LEU 452 O no hydrogen 2.745 N/A
/A ARG 457 NH1 /A TYR 456 O no hydrogen 3.006 N/A
/A ARG 457 NH2 /A HOH 75 O no hydrogen 2.579 N/A
/A ARG 457 NH2 /A TRP 476 O no hydrogen 2.938 N/A
/A MET 458 N /A HOH 89 O no hydrogen 2.981 N/A
/A GLU 459 N /A GLU 459 OE1 no hydrogen 2.434 N/A
/A ARG 460 NH1 /A CYS 464 O no hydrogen 2.733 N/A
/A CYS 464 N /A PRO 461 O no hydrogen 3.453 N/A
/A CYS 464 SG /A PRO 465 O no hydrogen 3.464 N/A
/A TYR 469 N /A PRO 465 O no hydrogen 3.069 N/A
/A TYR 469 OH /A MET 458 O no hydrogen 2.771 N/A
/A GLU 470 N /A GLU 466 O no hydrogen 2.851 N/A
/A LEU 471 N /A LYS 467 O no hydrogen 3.058 N/A
/A MET 472 N /A VAL 468 O no hydrogen 2.885 N/A
/A ARG 473 N /A TYR 469 O no hydrogen 2.783 N/A
/A ARG 473 NE /A TYR 469 OH no hydrogen 3.081 N/A
/A ARG 473 NH2 /A TYR 469 OH no hydrogen 3.362 N/A
/A ALA 474 N /A GLU 470 O no hydrogen 2.967 N/A
/A CYS 475 N /A LEU 471 O no hydrogen 3.000 N/A
/A CYS 475 SG /A LEU 471 O no hydrogen 3.274 N/A
/A TRP 476 N /A MET 472 O no hydrogen 3.156 N/A
/A GLN 477 N /A ALA 474 O no hydrogen 3.138 N/A
/A ASN 479 N /A HOH 82 O no hydrogen 3.060 N/A
/A SER 481 OG /A ASN 479 OD1 no hydrogen 3.169 N/A
/A ASP 482 N /A ASN 479 O no hydrogen 2.907 N/A
/A ARG 483 N /A PRO 480 O no hydrogen 2.948 N/A
/A ARG 483 NE /A GLN 477 O no hydrogen 2.736 N/A
/A ARG 483 NH1 /A GLU 409 OE1 no hydrogen 3.132 N/A
/A ARG 483 NH1 /A GLU 409 OE2 no hydrogen 2.604 N/A
/A ARG 483 NH1 /A LYS 419 O no hydrogen 2.990 N/A
/A ARG 483 NH2 /A GLU 409 OE1 no hydrogen 2.549 N/A
/A ARG 483 NH2 /A GLN 477 O no hydrogen 3.234 N/A
/A ARG 483 NH2 /A TRP 478 O no hydrogen 3.019 N/A
/A PHE 486 N /A GLU 355 OE2 no hydrogen 3.091 N/A
/A ALA 487 N /A GLU 355 OE1 no hydrogen 3.032 N/A
/A GLU 488 N /A SER 485 OG no hydrogen 2.904 N/A
/A ILE 489 N /A SER 485 O no hydrogen 2.952 N/A
/A HIS 490 N /A PHE 486 O no hydrogen 2.719 N/A
/A GLN 491 N /A ALA 487 O no hydrogen 2.969 N/A
/A ALA 492 N /A GLU 488 O no hydrogen 2.886 N/A
/A PHE 493 N /A ILE 489 O no hydrogen 2.801 N/A
/A GLU 494 N /A HIS 490 O no hydrogen 2.651 N/A
/A THR 495 N /A GLN 491 O no hydrogen 2.923 N/A
/A THR 495 OG1 /A GLN 491 O no hydrogen 3.109 N/A
/A MET 496 N /A ALA 492 O no hydrogen 3.239 N/A
/A PHE 497 N /A PHE 493 O no hydrogen 3.123 N/A
/A STI 600 N13 /A THR 315 OG1 no hydrogen 3.014 N/A
/A STI 600 N21 /A GLU 286 OE2 no hydrogen 3.089 N/A
/A STI 600 N51 /A ILE 360 O no hydrogen 2.723 N/A
356 hydrogen bonds found
> delete #2.1.2
> close #2.1.2
> hide ~sel
> hbonds sel reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
2.1 2hyy
5 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A MET 318 N /A STI 600 N3 no hydrogen 2.937 N/A
/A ASP 381 N /A STI 600 O29 no hydrogen 2.981 N/A
/A STI 600 N13 /A THR 315 OG1 no hydrogen 3.014 N/A
/A STI 600 N21 /A GLU 286 OE2 no hydrogen 3.089 N/A
/A STI 600 N51 /A ILE 360 O no hydrogen 2.723 N/A
5 hydrogen bonds found
> contacts sel makePseudobonds false reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: False
Detect intra-molecule contacts: True
87 contacts
atom1 atom2 overlap distance
/A STI 600 C52 /A ASP 381 OD2 0.332 2.968
/A STI 600 C52 /A HIS 361 O 0.321 2.979
/A STI 600 C53 /A ASP 381 OD2 0.265 3.035
/A STI 600 C11 /A PHE 382 CD2 0.225 3.295
/A STI 600 N10 /A PHE 382 CD2 0.206 3.194
/A STI 600 C20 /A ALA 269 CB 0.140 3.620
/A STI 600 C50 /A ILE 360 O 0.121 3.179
/A STI 600 C54 /A ILE 360 O 0.104 3.196
/A STI 600 N3 /A PHE 317 CD1 0.070 3.330
/A STI 600 C18 /A LYS 271 CB 0.057 3.583
/A STI 600 C11 /A VAL 256 CG1 0.052 3.588
/A STI 600 C2 /A MET 318 O 0.038 3.142
/A STI 600 C2 /A PHE 317 CE1 0.034 3.486
/A STI 600 O29 /A VAL 299 CG1 0.022 3.278
/A STI 600 N21 /A MET 290 CE 0.021 3.499
/A STI 600 N10 /A PHE 382 CE2 0.017 3.383
/A STI 600 C46 /A VAL 289 CG1 -0.013 3.773
/A STI 600 C54 /A HIS 361 O -0.021 3.321
/A STI 600 C11 /A PHE 382 CE2 -0.027 3.547
/A STI 600 C2 /A PHE 317 CD1 -0.038 3.558
/A STI 600 C46 /A ILE 293 CD1 -0.041 3.801
/A STI 600 N3 /A MET 318 N -0.057 2.937
/A STI 600 N51 /A ILE 360 O -0.063 2.723
/A STI 600 C17 /A HOH 146 O -0.064 3.284
/A STI 600 C6 /A LEU 370 CD2 -0.073 3.713
/A STI 600 C49 /A VAL 289 CG1 -0.074 3.834
/A STI 600 C20 /A LYS 271 N -0.089 3.609
/A STI 600 C25 /A ASP 381 CB -0.112 3.752
/A STI 600 C20 /A ALA 269 C -0.136 3.626
/A STI 600 C20 /A ALA 269 O -0.137 3.437
/A STI 600 C16 /A HOH 146 O -0.141 3.211
/A STI 600 C5 /A LEU 248 CD1 -0.142 3.632
/A STI 600 C9 /A PHE 382 CE2 -0.143 3.513
/A STI 600 C17 /A MET 290 SD -0.146 3.676
/A STI 600 C17 /A MET 290 CE -0.146 3.786
/A STI 600 C6 /A LEU 248 CD1 -0.150 3.790
/A STI 600 C54 /A ARG 362 CD -0.168 3.928
/A STI 600 C29 /A MET 290 CE -0.174 3.814
/A STI 600 C6 /A TYR 253 CE1 -0.176 3.696
/A STI 600 C54 /A ARG 362 CG -0.186 3.946
/A STI 600 C23 /A ASP 381 CB -0.187 3.677
/A STI 600 C53 /A ASP 381 CG -0.190 3.950
/A STI 600 C22 /A ASP 381 O -0.190 3.220
/A STI 600 C18 /A ILE 313 CG2 -0.192 3.832
/A STI 600 C20 /A LYS 271 CB -0.193 3.953
/A STI 600 N8 /A ALA 269 CB -0.206 3.726
/A STI 600 N3 /A PHE 317 CA -0.215 3.735
/A STI 600 C29 /A ASP 381 CB -0.216 3.856
/A STI 600 C25 /A ASP 381 N -0.217 3.617
/A STI 600 O29 /A ALA 380 CB -0.227 3.527
/A STI 600 C5 /A LEU 370 CD2 -0.239 3.729
/A STI 600 N21 /A MET 290 SD -0.245 3.255
/A STI 600 C17 /A GLU 286 OE2 -0.246 3.426
/A STI 600 C49 /A ILE 360 O -0.277 3.577
/A STI 600 C52 /A HOH 87 O -0.277 3.617
/A STI 600 C12 /A VAL 256 CG1 -0.285 3.925
/A STI 600 C12 /A TYR 253 CG -0.288 3.658
/A STI 600 C53 /A ASP 381 CB -0.289 4.049
/A STI 600 C14 /A THR 315 CG2 -0.297 3.787
/A STI 600 C16 /A MET 290 SD -0.301 3.681
/A STI 600 C12 /A TYR 253 CD2 -0.302 3.822
/A STI 600 N3 /A MET 318 CA -0.307 3.827
/A STI 600 N13 /A THR 315 OG1 -0.314 3.014
/A STI 600 C12 /A LEU 248 CD1 -0.314 3.954
/A STI 600 C11 /A TYR 253 CB -0.315 3.955
/A STI 600 C12 /A TYR 253 CD1 -0.316 3.836
/A STI 600 O29 /A ASP 381 N -0.321 2.981
/A STI 600 C15 /A VAL 299 CG1 -0.321 3.961
/A STI 600 O29 /A ALA 380 CA -0.328 3.628
/A STI 600 C4 /A LEU 370 CD1 -0.329 3.969
/A STI 600 C2 /A MET 318 N -0.333 3.733
/A STI 600 C12 /A PHE 382 CE2 -0.335 3.855
/A STI 600 C20 /A VAL 256 CG1 -0.343 4.103
/A STI 600 C4 /A LEU 370 CD2 -0.348 3.988
/A STI 600 C17 /A ILE 313 CG2 -0.349 3.989
/A STI 600 C1 /A GLY 321 CA -0.356 3.996
/A STI 600 C20 /A THR 315 OG1 -0.357 3.697
/A STI 600 C22 /A ASP 381 N -0.359 3.609
/A STI 600 C7 /A LEU 248 CD1 -0.361 3.851
/A STI 600 C1 /A LEU 370 CD2 -0.372 4.012
/A STI 600 N3 /A PHE 317 CE1 -0.377 3.777
/A STI 600 C26 /A ASP 381 CB -0.382 4.022
/A STI 600 C15 /A THR 315 CG2 -0.382 4.022
/A STI 600 C14 /A THR 315 OG1 -0.386 3.456
/A STI 600 C53 /A HIS 361 O -0.387 3.687
/A STI 600 C19 /A THR 315 CG2 -0.388 3.878
/A STI 600 C52 /A ASP 381 CG -0.393 4.153
87 contacts
> label @@display
> hide solvent
> select clear
> cartoon suppressBackboneDisplay true
> cartoon suppressBackboneDisplay false
> name resist :250,253,256,301,315,317,320,351,373,381
> color resist & C gold target al
> show resist
> style resist ball
Changed 86 atom styles
> view resist clip false
> label height 1.0
> sequence chain /a
Alignment identifier is 2.1/A
> select resist
86 atoms, 79 bonds, 10 residues, 1 model selected
> select
> /A:249-252,263-265,279-292,323-330,336-357,365-367,373-375,383-388,402-414,417-434,444-454,465-476,479-483,485-497
1058 atoms, 1070 bonds, 135 residues, 1 model selected
> select
> /A:242-247,256-261,266-272,301-305,312-316,321-322,369-371,377-379,394-396,399-401
329 atoms, 325 bonds, 43 residues, 1 model selected
> close session
> log cleaar
Expected a keyword
> log clear
> open 1fpp
Summary of feedback from opening 1fpp fetched from pdb
---
notes | Fetching compressed mmCIF 1fpp from
http://files.rcsb.org/download/1fpp.cif
Fetching CCD ZN from http://ligand-expo.rcsb.org/reports/Z/ZN/ZN.cif
Fetching CCD PO4 from http://ligand-expo.rcsb.org/reports/P/PO4/PO4.cif
Fetching CCD FPP from http://ligand-expo.rcsb.org/reports/F/FPP/FPP.cif
1fpp title:
Protein farnesyltransferase complex with farnesyl diphosphate [more info...]
Chain information for 1fpp #1
---
Chain | Description | UniProt
A | protein farnesyltransferase | PFTA_RAT
B | protein farnesyltransferase | PFTB_RAT
Non-standard residues in 1fpp #1
---
FPP — farnesyl diphosphate
PO4 — phosphate ion
ZN — zinc ion
> mlp
Map values for surface "1fpp_A SES surface": minimum -28.46, mean -4.976,
maximum 24.73
Map values for surface "1fpp_B SES surface": minimum -27.83, mean -4.111,
maximum 22.2
> surface zone #1 nearAtoms :fpp distance 8 maxComponents 1
> :fpp
Unknown command: segmentation :fpp
> select :fpp
24 atoms, 23 bonds, 1 residue, 1 model selected
> view sel clip false
> surface unzone
Missing or invalid "surfaces" argument: empty atom specifier
> surface unzone #1
> surface zone #1 nearAtoms :fpp distance 8
> clsoe
Unknown command: clsoe
> close
> log clear
> open 4xt3
Summary of feedback from opening 4xt3 fetched from pdb
---
notes | Fetching compressed mmCIF 4xt3 from
http://files.rcsb.org/download/4xt3.cif
Fetching CCD PCA from http://ligand-expo.rcsb.org/reports/P/PCA/PCA.cif
4xt3 title:
Structure of a viral GPCR bound to human chemokine CX3CL1 [more info...]
Chain information for 4xt3 #1
---
Chain | Description | UniProt
A | G-protein coupled receptor homolog US28 | US28_HCMVA
B | Fractalkine | X3CL1_HUMAN
Non-standard residues in 4xt3 #1
---
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose
PO4 — phosphate ion
UNL — unknown ligand
> mlp
Map values for surface "4xt3_A SES surface": minimum -28.71, mean 1.122,
maximum 23.28
Map values for surface "4xt3_B SES surface": minimum -25.15, mean -4.785,
maximum 22.04
> cllose
Unknown command: cllose
> clsoe
Unknown command: clsoe
> clsoeclose
Unknown command: clsoeclose
> close
> log clear
> oepn 1g74
Unknown command: oepn 1g74
> open 1g74
Summary of feedback from opening 1g74 fetched from pdb
---
note | Fetching compressed mmCIF 1g74 from
http://files.rcsb.org/download/1g74.cif
1g74 title:
Toward changing specificity: adipocyte lipid binding protein mutant, oleic
acid bound form [more info...]
Chain information for 1g74 #1
---
Chain | Description | UniProt
A | adipocyte lipid-binding protein | FABPA_MOUSE
Non-standard residues in 1g74 #1
---
OLA — oleic acid
PO4 — phosphate ion
> surface
> clip
> clip model #!1 false
> hide ~:ola target ar
> color :ola & C green
> clip off
> clip
> mlp
Map values for surface "1g74_A SES surface": minimum -27.91, mean -5.662,
maximum 22.39
> mlp protein surfaces #1.1.1
Map values for surface "cap front": minimum -49.7, mean -5.238, maximum 50.42
> transparency #1.1.1 30
> coulombic protein
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 1g74_A SES surface #1.1: minimum, -11.34, mean -0.02,
maximum 10.80
> coulombic protein surfaces #1.1.1 offset 0
Coulombic values for cap front #1.1.1: minimum, -1195.30, mean 4.91, maximum
1221.48
> close
> log clear
> open 3d6y
Summary of feedback from opening 3d6y fetched from pdb
---
notes | Fetching compressed mmCIF 3d6y from
http://files.rcsb.org/download/3d6y.cif
Fetching CCD BER from http://ligand-expo.rcsb.org/reports/B/BER/BER.cif
Fetching CCD GOL from http://ligand-expo.rcsb.org/reports/G/GOL/GOL.cif
3d6y title:
Crystal structure of R275E mutant of BMRR bound to DNA and berberine [more
info...]
Chain information for 3d6y #1
---
Chain | Description | UniProt
A | Multidrug-efflux transporter 1 regulator | BMRR_BACSU
B | BMR promoter DNA |
Non-standard residues in 3d6y #1
---
BER — berberine
GOL — glycerol (glycerin; propane-1,2,3-triol)
3d6y mmCIF Assemblies
---
1| author_and_software_defined_assembly
> close
> open 3d6y fromDatabase rcsb_bio max 1
Expected keyword "maxAssemblies" or "maxModels"
> open 3d6y fromDatabase rcsb_bio maxAssemblies 1
Summary of feedback from opening 3d6y fetched from rcsb_bio
---
note | Fetching compressed 3d6y bioassembly 1 from
https://files.rcsb.org/download/3d6y-assembly1.cif
3d6y bioassembly 1 title:
Crystal structure of R275E mutant of BMRR bound to DNA and berberine [more
info...]
Chain information for 3d6y bioassembly 1 #1
---
Chain | Description
A A-2 | Multidrug-efflux transporter 1 regulator
B B-2 | BMR promoter DNA
Non-standard residues in 3d6y bioassembly 1 #1
---
BER — berberine
GOL — glycerol (glycerin; propane-1,2,3-triol)
Opened 1 biological assemblies for 3d6y
> turn x 90
> turn x -90
> turn y 90
> turn y -90
> turn z 90
> turn z -90
> turn x -180
> turn y -180
> turn z -180
> hide :gol
> hide solvent
> hide protein
> select clear
> color protein
> coulombic protein
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for 3d6y bioassembly 1_A SES surface #1.1: minimum, -16.84,
mean -2.11, maximum 14.59
Coulombic values for 3d6y bioassembly 1_A-2 SES surface #1.2: minimum, -16.17,
mean -2.12, maximum 15.04
> color nucleic tan
> cartoon style nucleic xsection round width 1.5 thickness 1.5
> nucleotides stubs
> size :ber stickRadius .7
Changed 58 bond radii
> color C & :ber limegreen
> coulombic protein key true
Coulombic values for 3d6y bioassembly 1_A SES surface #1.1: minimum, -16.84,
mean -2.11, maximum 14.59
Coulombic values for 3d6y bioassembly 1_A-2 SES surface #1.2: minimum, -16.17,
mean -2.12, maximum 15.04
> key red-white-blue :-10 :0 :10 showTool true
> ui mousemode right "color key"
> ui mousemode right translate
> set bgColor white
> lighting soft
> lighting gentle
> sil t
Unknown command: sil t
> sil tsill t
Unknown command: sil tsill t
> sill t
Unknown command: sill t
> sil t
Unknown command: sil t
> set silhouettes true
> set silhouettes true width 1
Expected a keyword
> sil thickness 1
Unknown command: sil thickness 1
> set silhouetteDepthJump 0.02
> close
> pwd
Current working directory is: /Users/ich/Desktop
> cd /Users/ich/charisma/SPRED/ep2_ab/
Current working directory is: /Users/ich/Charisma/SPRED/ep2_ab
> open /Users/ich/Charisma/SPRED/ep2_ab/ep2_opm.cxs format session
opened ChimeraX session
> show #!4 models
> ui mousemode right zoom
> ui mousemode right "move label"
> 2dlabels #4.2 xpos 0.191 ypos 0.795
> 2dlabels #4.3 xpos 0.650 ypos 0.481
> mpl protein key t
Unknown command: mpl protein key t
> mlp protein key true
Map values for surface "7cx2.pdb_A SES surface": minimum -27.87, mean -4.57,
maximum 23.19
Map values for surface "7cx2.pdb_B SES surface": minimum -29.35, mean -5.506,
maximum 22.67
Map values for surface "7cx2.pdb_G SES surface": minimum -25.31, mean -3.553,
maximum 22.06
Map values for surface "7cx2.pdb_N SES surface": minimum -28.01, mean -7.039,
maximum 21.45
Map values for surface "7cx2.pdb_R SES surface": minimum -27.26, mean
-0.06245, maximum 23.32
> key lipophilicity :-20 :0 :20 showTool true
> ui mousemode right "color key"
> key lipophilicity :-20 :0 :H
> key lipophilicity :-20 :0 :HP
> key lipophilicity :H :0 :HP
> key lipophilicity :HF :0 :HP
> ui mousemode right "move label"
> 2dlabels #4.1 xpos 0.185 ypos 0.933
> ui mousemode right zoom
> ui mousemode right "move label"
> 2dlabels #4.3 xpos 0.673 ypos 0.438
> 2dlabels #4.2 xpos 0.171 ypos 0.801
> mlp protein key true
Map values for surface "7cx2.pdb_A SES surface": minimum -27.87, mean -4.57,
maximum 23.19
Map values for surface "7cx2.pdb_B SES surface": minimum -29.35, mean -5.506,
maximum 22.67
Map values for surface "7cx2.pdb_G SES surface": minimum -25.31, mean -3.553,
maximum 22.06
Map values for surface "7cx2.pdb_N SES surface": minimum -28.01, mean -7.039,
maximum 21.45
Map values for surface "7cx2.pdb_R SES surface": minimum -27.26, mean
-0.06245, maximum 23.32
> key lipophilicity :-20 :0 :20 showTool true
> ui mousemode right "color key"
> key border false
> key border true
> key border false
> key border true
> key border false
> key pos 0.69000,0.08000
> key pos 0.68000,0.08000
> key pos 0.67000,0.08000
> key pos 0.66000,0.08000
> key pos 0.65000,0.08000
> key pos 0.64000,0.08000
> key pos 0.63000,0.08000
> key pos 0.62000,0.08000
> key pos 0.61000,0.08000
> key pos 0.60000,0.08000
> key pos 0.60000,0.07000
> key size 0.24000,0.05000
> key size 0.23000,0.05000
> key size 0.22000,0.05000
> key size 0.21000,0.05000
> key size 0.21000,0.04000
> key size 0.21000,0.03000
> key size 0.20000,0.03000
> key size 0.19000,0.03000
> key lipophilicity :-20 :0 :H
> key lipophilicity :-20 :0 :HF
> key lipophilicity :H :0 :HF
> key lipophilicity :HP :0 :HF
> ui mousemode right "move label"
> ui mousemode right zoom
> ui mousemode right "move label"
> 2dlabels #4.3 xpos 0.670 ypos 0.437
> 2dlabels #4.2 xpos 0.167 ypos 0.792
> 2dlabels #4.1 xpos 0.160 ypos 0.935
> save 7cx2_mlp.png
> ui mousemode right zoom
> ui mousemode right "move label"
> 2dlabels #4.3 xpos 0.666 ypos 0.446
> 2dlabels #4.2 xpos 0.175 ypos 0.805
> 2dlabels #4.1 xpos 0.176 ypos 0.931
> key lipophilicity :Hphilic :0 :Hphobic
> ui mousemode right zoom
> ui mousemode right "move label"
> 2dlabels #4.2 xpos 0.177 ypos 0.815
> 2dlabels #4.3 xpos 0.662 ypos 0.435
> 2dlabels #4.3 xpos 0.663 ypos 0.444
> ui mousemode right zoom
> pwd
Current working directory is: /Users/ich/Charisma/SPRED/ep2_ab
> save ab_surface.cxs
> close
> log clear
> open ep2_7cx2.pdb
Chain information for ep2_7cx2.pdb #1
---
Chain | Description
R | No description available
> view
> zoom 1.1
> color teal
> lighting gentle
> lighting soft
> sill t
Unknown command: sill t
> set sill t
Expected a keyword
> set silhouettes true
> set silDepth 1
Expected a keyword
> set silD
Expected a keyword
> set sillhouetteDepth 1
Expected a keyword
> set sillhouettedepth .02
Expected a keyword
> set sildepth .02
Expected a keyword
> set silhouetteDepthJump .02
> silhouette
Unknown command: silhouette
> graphics silhouettes width 5
> graphics silhouettes width .5
> graphics silhouettes width 1
> set silhouettes true color white dept .02
Expected a keyword
> set silhouettes color white dept .02
Invalid "silhouettes" argument: Expected true or false (or 1 or 0)
> graphics silhouettes color white depthJump .02
QMainWindowLayout::tabPosition called with out-of-bounds value '0'
> select pseudo
Expected an objects specifier or a keyword
> select non protein
Expected an objects specifier or a keyword
> select !=protein
Expected an objects specifier or a keyword
> select pbonds
2 pseudobonds, 1 model selected
> color sel yellow
> select clear
> color sel yellow target b
> color sel yellow target c
> select pbonds
2 pseudobonds, 1 model selected
> select clear
> color pbonds yellow target b
> color pbonds yellow target c
> color pbonds yellow target f
> select pbonds\
Expected an objects specifier or a keyword
> select pbonds
2 pseudobonds, 1 model selected
> hide atoms
> hide cartoons
> show cartoons
> select clear
> graphics silhouettes false
> color #1.1 #ff2f92 models transparency 0
> color #1.1 #941100 models transparency 0
> color #1.1 #ff2600 models transparency 0
> color #1 #009051 transparency 0
> color main teal
> color main moss
Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', or 'random'
or a keyword
> color #1 #009051 transparency 0
> color list
No custom colors.
248 builtin colors: alice blue
, aliceblue
, antique white
, antiquewhite
, aqua
, aquamarine
, azure
, beige
, bisque
, black
, blanched almond
, blanchedalmond
, blue
, blue violet
, blueviolet
, brown
, burly wood
, burlywood
, cadet blue
, cadetblue
, chartreuse
, chocolate
, coral
, cornflower blue
, cornflowerblue
, cornsilk
, crimson
, cyan
, dark blue
, dark cyan
, dark goldenrod
, dark gray
, dark green
, dark grey
, dark khaki
, dark magenta
, dark olive green
, dark orange
, dark orchid
, dark red
, dark salmon
, dark sea green
, dark seagreen
, dark slate blue
, dark slate gray
, dark slate grey
, dark turquoise
, dark violet
, darkblue
, darkcyan
, darkgoldenrod
, darkgray
, darkgreen
, darkgrey
, darkkhaki
, darkmagenta
, darkolivegreen
, darkorange
, darkorchid
, darkred
, darksalmon
, darkseagreen
, darkslateblue
, darkslategray
, darkslategrey
, darkturquoise
, darkviolet
, deep pink
, deep sky blue
, deep skyblue
, deeppink
, deepskyblue
, dim gray
, dim grey
, dimgray
, dimgrey
, dodger blue
, dodgerblue
, fire brick
, firebrick
, floral white
, floralwhite
, forest green
, forestgreen
, fuchsia
, gainsboro
, ghost white
, ghostwhite
, gold
, goldenrod
, gray
, green
, green yellow
, greenyellow
, grey
, honeydew
, hot pink
, hotpink
, indian red
, indianred
, indigo
, ivory
, khaki
, lavender
, lavender blush
, lavenderblush
, lawn green
, lawngreen
, lemon chiffon
, lemonchiffon
, light blue
, light coral
, light cyan
, light goldenrod yellow
, light gray
, light green
, light grey
, light pink
, light salmon
, light sea green
, light seagreen
, light sky blue
, light skyblue
, light slate gray
, light slate grey
, light steel blue
, light yellow
, lightblue
, lightcoral
, lightcyan
, lightgoldenrodyellow
, lightgray
, lightgreen
, lightgrey
, lightpink
, lightsalmon
, lightseagreen
, lightskyblue
, lightslategray
, lightslategrey
, lightsteelblue
, lightyellow
, lime
, lime green
, limegreen
, linen
, magenta
, maroon
, medium aquamarine
, medium blue
, medium orchid
, medium purple
, medium sea green
, medium seagreen
, medium slate blue
, medium spring green
, medium turquoise
, medium violet red
, mediumaquamarine
, mediumblue
, mediumorchid
, mediumpurple
, mediumseagreen
, mediumslateblue
, mediumspringgreen
, mediumturquoise
, mediumvioletred
, midnight blue
, midnightblue
, mint cream
, mintcream
, misty rose
, mistyrose
, moccasin
, navajo white
, navajowhite
, navy
, old lace
, oldlace
, olive
, olive drab
, olivedrab
, orange
, orange red
, orangered
, orchid
, pale goldenrod
, pale green
, pale turquoise
, pale violet red
, palegoldenrod
, palegreen
, paleturquoise
, palevioletred
, papaya whip
, papayawhip
, peach puff
, peachpuff
, peru
, pink
, plum
, powder blue
, powderblue
, purple
, rebecca purple
, rebeccapurple
, red
, rosy brown
, rosybrown
, royal blue
, royalblue
, saddle brown
, saddlebrown
, salmon
, sandy brown
, sandybrown
, sea green
, seagreen
, seashell
, sienna
, silver
, sky blue
, skyblue
, slate blue
, slate gray
, slate grey
, slateblue
, slategray
, slategrey
, snow
, spring green
, springgreen
, steel blue
, steelblue
, tan
, teal
, thistle
, tomato
, transparent
, turquoise
, violet
, wheat
, white
, white smoke
, whitesmoke
, yellow
, yellow green
, and yellowgreen
.
> color #1 #00a65d transparency 0
===== Log before crash end =====
Log:
Startup Messages
---
warning | Custom presets folder '/Users/ich/Charisma/S-PRED' does not exist
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.8.54
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1731.120.10.0.0 (iBridge: 19.16.15071.0.0,0)
OS Loader Version: 540.120.3~6
Software:
System Software Overview:
System Version: macOS 12.4 (21F79)
Kernel Version: Darwin 21.5.0
Time since boot: 3 days 29 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-020
Option ROM Version: 113-D32206U1-020
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
LG HDR WQHD:
Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
UI Looks like: 3440 x 1440 @ 100.00Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: 111NTJJ17772
Mirror: Off
Online: Yes
Rotation: Supported
Connection Type: Thunderbolt/DisplayPort
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.1
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
MolecularDynamicsViewer: 1.4
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using color panel |
comment:2 by , 3 years ago
| Status: | accepted → feedback |
|---|
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Hi Charisma,
--Eric