![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 years ago
Closed 3 years ago
#7228 closed defect (nonchimerax)
Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000011013fdc0 (most recent call first):
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 2720 in draw_elements
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1723 in draw
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 824 in _draw_geometry
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 759 in draw_self
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 752 in draw
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1539 in _draw_multiple
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1526 in draw_opaque
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 235 in _draw_scene
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 165 in draw
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 276 in render
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 116 in exposeEvent
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/rt/0b8l5m1j0_d1q6mkbmsjcd1h0000gn/T/AppTranslocation/7B9258B9-F888-440D-9F94-B2D3F2031EE0/d/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [15521]
Path: /Volumes/VOLUME/*/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: ???
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [15521]
User ID: 501
Date/Time: 2022-07-06 16:29:52.828 +0100
OS Version: Mac OS X 10.15.7 (19H1715)
Report Version: 12
Bridge OS Version: 6.2 (19P744)
Anonymous UUID: CA97F38B-1B62-060C-1502-608B994EEA09
Sleep/Wake UUID: 00561DAB-6FB2-4E3F-98E8-C044E6C91BE8
Time Awake Since Boot: 38000 seconds
Time Since Wake: 5600 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6d91233a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6d9cee60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff6d82993e raise + 26
3 libsystem_platform.dylib 0x00007fff6d9c35fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff6d899808 abort + 120
6 libGPUSupportMercury.dylib 0x00007fff54e020a5 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff54df918f gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff2adcfb38 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff54dfa6a1 gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff2a03d290 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff2a03d07c intelSubmitCommands + 171
12 com.apple.driver.AppleIntelICLGraphicsGLDriver 0x00007fff2a030718 updateDispatch + 6403
13 GLEngine 0x00007fff3e58774c gleDoDrawDispatchCoreGL3 + 693
14 GLEngine 0x00007fff3e55bfb6 glDrawElementsInstanced_ACC_GL3Exec + 290
15 libffi.dylib 0x00007fff6b56c905 ffi_call_unix64 + 85
16 libffi.dylib 0x00007fff6b56c244 ffi_call_int + 694
17 _ctypes.cpython-39-darwin.so 0x0000000116183d0d _ctypes_callproc + 1037
18 _ctypes.cpython-39-darwin.so 0x000000011617da96 PyCFuncPtr_call + 1206
19 org.python.python 0x000000010b45dadc _PyObject_Call + 140
20 org.python.python 0x000000010b4b6526 slot_tp_call + 230
21 wrapper.cpython-39-darwin.so 0x00000001294432ae __pyx_pw_17OpenGL_accelerate_7wrapper_7Wrapper_3__call__ + 830
22 latebind.cpython-39-darwin.so 0x000000012949f49e __pyx_pw_17OpenGL_accelerate_8latebind_8LateBind_11__call__ + 158
23 org.python.python 0x000000010b45d5b7 _PyObject_MakeTpCall + 359
24 org.python.python 0x000000010b535e9c call_function + 876
25 org.python.python 0x000000010b5332a2 _PyEval_EvalFrameDefault + 25554
26 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
27 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
28 org.python.python 0x000000010b535e0c call_function + 732
29 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
30 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
31 org.python.python 0x000000010b535e0c call_function + 732
32 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
33 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
34 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
35 org.python.python 0x000000010b45fd6a method_vectorcall + 202
36 org.python.python 0x000000010b535e0c call_function + 732
37 org.python.python 0x000000010b5333e8 _PyEval_EvalFrameDefault + 25880
38 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
39 org.python.python 0x000000010b535e0c call_function + 732
40 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
41 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
42 org.python.python 0x000000010b535e0c call_function + 732
43 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
44 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
45 org.python.python 0x000000010b535e0c call_function + 732
46 org.python.python 0x000000010b53334b _PyEval_EvalFrameDefault + 25723
47 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
48 org.python.python 0x000000010b535e0c call_function + 732
49 org.python.python 0x000000010b53334b _PyEval_EvalFrameDefault + 25723
50 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
51 org.python.python 0x000000010b535e0c call_function + 732
52 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
53 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
54 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
55 org.python.python 0x000000010b535e0c call_function + 732
56 org.python.python 0x000000010b53327e _PyEval_EvalFrameDefault + 25518
57 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
58 org.python.python 0x000000010b45fd6a method_vectorcall + 202
59 org.python.python 0x000000010b535e0c call_function + 732
60 org.python.python 0x000000010b5332a2 _PyEval_EvalFrameDefault + 25554
61 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
62 org.python.python 0x000000010b45fe59 method_vectorcall + 441
63 sip.cpython-39-darwin.so 0x000000011addcc77 sip_api_call_procedure_method + 199
64 QtGui.abi3.so 0x000000011c2be7e8 sipQWindow::exposeEvent(QExposeEvent*) + 104
65 QtGui 0x000000011bb0473b QWindow::event(QEvent*) + 875
66 QtGui.abi3.so 0x000000011c2bedaf sipQWindow::event(QEvent*) + 191
67 QtWidgets 0x000000011b41b067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
68 QtWidgets 0x000000011b41c023 QApplication::notify(QObject*, QEvent*) + 499
69 QtWidgets.abi3.so 0x000000011af3d829 sipQApplication::notify(QObject*, QEvent*) + 233
70 QtCore 0x0000000118cf4dca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
71 QtGui 0x000000011bac34e6 QGuiApplicationPrivate::processExposeEvent(QWindowSystemInterfacePrivate::ExposeEvent*) + 406
72 QtGui 0x000000011bb0fed5 0x11ba2b000 + 937685
73 QtGui 0x000000011bb0c659 bool QWindowSystemInterface::handleExposeEvent(QWindow*, QRegion const&) + 57
74 libqcocoa.dylib 0x0000000128144ada 0x1280f8000 + 314074
75 libqcocoa.dylib 0x000000012815db97 0x1280f8000 + 416663
76 com.apple.QuartzCore 0x00007fff3f4863e0 -[CALayer display] + 180
77 com.apple.AppKit 0x00007fff314d682c -[_NSOpenGLViewBackingLayer display] + 133
78 com.apple.QuartzCore 0x00007fff3f485cad CA::Layer::display_if_needed(CA::Transaction*) + 757
79 com.apple.QuartzCore 0x00007fff3f463fca CA::Context::commit_transaction(CA::Transaction*, double) + 334
80 com.apple.QuartzCore 0x00007fff3f462bb4 CA::Transaction::commit() + 644
81 com.apple.AppKit 0x00007fff317278e8 __68-[_NSEnterFullScreenTransitionController _startFullScreenTransition]_block_invoke + 126
82 libdispatch.dylib 0x00007fff6d7706c4 _dispatch_call_block_and_release + 12
83 libdispatch.dylib 0x00007fff6d771658 _dispatch_client_callout + 8
84 libdispatch.dylib 0x00007fff6d77ccab _dispatch_main_queue_callback_4CF + 936
85 com.apple.CoreFoundation 0x00007fff33ba27b1 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 9
86 com.apple.CoreFoundation 0x00007fff33b625b7 __CFRunLoopRun + 2028
87 com.apple.CoreFoundation 0x00007fff33b6176e CFRunLoopRunSpecific + 462
88 com.apple.HIToolbox 0x00007fff3278daad RunCurrentEventLoopInMode + 292
89 com.apple.HIToolbox 0x00007fff3278d7c5 ReceiveNextEventCommon + 584
90 com.apple.HIToolbox 0x00007fff3278d569 _BlockUntilNextEventMatchingListInModeWithFilter + 64
91 com.apple.AppKit 0x00007fff30dd6659 _DPSNextEvent + 883
92 com.apple.AppKit 0x00007fff30dd4ea0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
93 com.apple.AppKit 0x00007fff30dc6bae -[NSApplication run] + 658
94 libqcocoa.dylib 0x000000012811148c 0x1280f8000 + 103564
95 QtCore 0x0000000118cfe516 QEventLoop::exec(QFlags) + 486
96 QtCore 0x0000000118cf53e5 QCoreApplication::exec() + 133
97 QtWidgets.abi3.so 0x000000011b02a90a meth_QApplication_exec(_object*, _object*) + 90
98 org.python.python 0x000000010b49c71d cfunction_call + 125
99 org.python.python 0x000000010b45d5b7 _PyObject_MakeTpCall + 359
100 org.python.python 0x000000010b535e9c call_function + 876
101 org.python.python 0x000000010b5332a2 _PyEval_EvalFrameDefault + 25554
102 org.python.python 0x000000010b45dd28 function_code_fastcall + 104
103 org.python.python 0x000000010b45fd6a method_vectorcall + 202
104 org.python.python 0x000000010b535e0c call_function + 732
105 org.python.python 0x000000010b5332a2 _PyEval_EvalFrameDefault + 25554
106 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
107 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
108 org.python.python 0x000000010b535e0c call_function + 732
109 org.python.python 0x000000010b53334b _PyEval_EvalFrameDefault + 25723
110 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
111 org.python.python 0x000000010b52cdab PyEval_EvalCode + 139
112 org.python.python 0x000000010b529c12 builtin_exec + 626
113 org.python.python 0x000000010b49c023 cfunction_vectorcall_FASTCALL + 195
114 org.python.python 0x000000010b535e0c call_function + 732
115 org.python.python 0x000000010b53334b _PyEval_EvalFrameDefault + 25723
116 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
117 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
118 org.python.python 0x000000010b535e0c call_function + 732
119 org.python.python 0x000000010b53334b _PyEval_EvalFrameDefault + 25723
120 org.python.python 0x000000010b536b03 _PyEval_EvalCode + 2611
121 org.python.python 0x000000010b45dcb1 _PyFunction_Vectorcall + 289
122 org.python.python 0x000000010b59c870 pymain_run_module + 208
123 org.python.python 0x000000010b59bf87 Py_RunMain + 1431
124 org.python.python 0x000000010b59c58f pymain_main + 223
125 org.python.python 0x000000010b59c49b Py_Main + 43
126 edu.ucsf.cgl.ChimeraX 0x000000010b414dc8 main + 120
127 libdyld.dylib 0x00007fff6d7cacc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6d90e882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6d9cf425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c1d449f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff6d90e882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6d9cf425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c1d449f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff6d90e882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6d9cf425 _pthread_cond_wait + 698
2 libopenblas64_.0.dylib 0x000000010c1d449f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6d914b96 kevent64 + 10
1 QtWebEngineCore 0x00000001205ed5ca 0x11c68b000 + 66463178
2 QtWebEngineCore 0x00000001205ed4c7 0x11c68b000 + 66462919
3 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
4 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
5 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
6 QtWebEngineCore 0x000000012057384d 0x11c68b000 + 65964109
7 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
8 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 5:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6d914b96 kevent64 + 10
1 QtWebEngineCore 0x00000001205ed5ca 0x11c68b000 + 66463178
2 QtWebEngineCore 0x00000001205ed4c7 0x11c68b000 + 66462919
3 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
4 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
5 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
6 QtWebEngineCore 0x000000011f4b2e32 0x11c68b000 + 48397874
7 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
8 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 6:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x000000012057fd5f 0x11c68b000 + 66014559
4 QtWebEngineCore 0x000000012058080c 0x11c68b000 + 66017292
5 QtWebEngineCore 0x000000012058040d 0x11c68b000 + 66016269
6 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6d90e882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6d9cf425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001205b38bb 0x11c68b000 + 66226363
3 QtWebEngineCore 0x000000012268455d 0x11c68b000 + 100635997
4 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
5 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6d914b96 kevent64 + 10
1 QtWebEngineCore 0x00000001205ed5ca 0x11c68b000 + 66463178
2 QtWebEngineCore 0x00000001205ed4c7 0x11c68b000 + 66462919
3 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
4 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
5 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
6 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
7 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
8 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 13:: NetworkService
0 libsystem_kernel.dylib 0x00007fff6d914b96 kevent64 + 10
1 QtWebEngineCore 0x00000001205ed5ca 0x11c68b000 + 66463178
2 QtWebEngineCore 0x00000001205ed4c7 0x11c68b000 + 66462919
3 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
4 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
5 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
6 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
7 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
8 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 15:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x000000012057fd5f 0x11c68b000 + 66014559
4 QtWebEngineCore 0x000000012058080c 0x11c68b000 + 66017292
5 QtWebEngineCore 0x000000012058046d 0x11c68b000 + 66016365
6 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 17:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff33b63825 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff33b622f2 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff33b6176e CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff30f77ea4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 18:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x000000012057fd5f 0x11c68b000 + 66014559
4 QtWebEngineCore 0x000000012058080c 0x11c68b000 + 66017292
5 QtWebEngineCore 0x000000012058037d 0x11c68b000 + 66016125
6 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 19:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x00000001205bb78f 0x11c68b000 + 66258831
4 QtWebEngineCore 0x00000001204f1089 0x11c68b000 + 65429641
5 QtWebEngineCore 0x000000012056a19c 0x11c68b000 + 65925532
6 QtWebEngineCore 0x0000000120521ff8 0x11c68b000 + 65630200
7 QtWebEngineCore 0x000000012058c458 0x11c68b000 + 66065496
8 QtWebEngineCore 0x000000012058c5ea 0x11c68b000 + 66065898
9 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
11 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 20:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x000000012057fd5f 0x11c68b000 + 66014559
4 QtWebEngineCore 0x000000012058053a 0x11c68b000 + 66016570
5 QtWebEngineCore 0x00000001205803ad 0x11c68b000 + 66016173
6 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 21:
0 libsystem_pthread.dylib 0x00007fff6d9cab68 start_wqthread + 0
Thread 22:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6d90bdfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6d90c170 mach_msg + 60
2 QtWebEngineCore 0x00000001205bb9c6 0x11c68b000 + 66259398
3 QtWebEngineCore 0x000000012057fd5f 0x11c68b000 + 66014559
4 QtWebEngineCore 0x000000012058053a 0x11c68b000 + 66016570
5 QtWebEngineCore 0x000000012058037d 0x11c68b000 + 66016125
6 QtWebEngineCore 0x00000001205b44a8 0x11c68b000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6d9cf109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff6d9cab8b thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff6d9cab68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011013fdc0 rcx: 0x00007fa86ea55418 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fa86ea55440 rsp: 0x00007fa86ea55418
r8: 0x00007fa86ea55f48 r9: 0xb9e0c2100f39423f r10: 0x000000011013fdc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007fa870c633c8 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff6d91233a rfl: 0x0000000000000246 cr2: 0x00007fa86ea548c0
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6d5be000 - 0x7fff6d5c5fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff6d5c6000 - 0x7fff6d5cfff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6d5d0000 - 0x7fff6d662fdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff6d76f000 - 0x7fff6d7afff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6d7b0000 - 0x7fff6d7e6fff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff6d7e7000 - 0x7fff6d7e7ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6d7e8000 - 0x7fff6d7f4ff3 libkxld.dylib (6153.141.51) /usr/lib/system/libkxld.dylib
0x7fff6d7f5000 - 0x7fff6d7f5ff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff6d7f6000 - 0x7fff6d7fbff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff6d7fc000 - 0x7fff6d7feff3 libquarantine.dylib (110.40.6) /usr/lib/system/libquarantine.dylib
0x7fff6d7ff000 - 0x7fff6d800ff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff6d801000 - 0x7fff6d818ff3 libsystem_asl.dylib (377.60.3) /usr/lib/system/libsystem_asl.dylib
0x7fff6d819000 - 0x7fff6d819ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff6d81a000 - 0x7fff6d8a1fff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff6d8a2000 - 0x7fff6d8a5ffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff6d8a6000 - 0x7fff6d8a9fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6d8aa000 - 0x7fff6d8b2fff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib
0x7fff6d8b3000 - 0x7fff6d8bafff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6d8bb000 - 0x7fff6d8bcffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff6d8bd000 - 0x7fff6d90aff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff6d90b000 - 0x7fff6d937ff7 libsystem_kernel.dylib (6153.141.51) /usr/lib/system/libsystem_kernel.dylib
0x7fff6d938000 - 0x7fff6d97ffff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff6d980000 - 0x7fff6d9a7fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff6d9a8000 - 0x7fff6d9b5ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6d9b6000 - 0x7fff6d9bfff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff6d9c0000 - 0x7fff6d9c8fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6d9c9000 - 0x7fff6d9d3fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff6d9d4000 - 0x7fff6d9d8ff3 libsystem_sandbox.dylib (1217.141.8) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6d9d9000 - 0x7fff6d9dbfff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6d9dc000 - 0x7fff6d9e3ffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6d9e4000 - 0x7fff6d9faff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff6d9fc000 - 0x7fff6da01ff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6da02000 - 0x7fff6da37ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 27
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 37649
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=4.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.5G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 992K 2
CG image 336K 27
CoreAnimation 260K 23
CoreGraphics 8K 1
CoreImage 24K 2
CoreUI image data 2752K 23
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 3.7G 846
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 92K 23
Stack 147.2M 24
Stack Guard 56.0M 1
VM_ALLOCATE 221.1M 101
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 63.7M 597
__DATA_CONST 124K 7
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 417.9M 172
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 615.2M 566
__UNICODE 564K 1
mapped file 85.9M 45
shared memory 2988K 29
=========== ======= =======
TOTAL 5.7G 2519
TOTAL, minus reserved VM space 5.3G 2519
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/suzanne/Desktop/kiarish_tip/output_fixed_aa 2.cif" format mmcif
Summary of feedback from opening
/Users/suzanne/Desktop/kiarish_tip/output_fixed_aa 2.cif
---
warnings | Missing entity information. Treating each chain as a separate
entity.
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
Chain information for output_fixed_aa 2.cif #1
---
Chain | Description
0 1 7 9 AB w x y z | No description available
2 3 G H MZ v | No description available
4 6 AP NL | No description available
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B7 Bc Cz Dh Dk GF Gk HD Ir JH JL K4 KV Kb Ku Lx MF fE gt hk | No description
available
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S9 | No description available
SA | No description available
SB | No description available
SC | No description available
SD | No description available
SE | No description available
SG | No description available
SH | No description available
SI bj | No description available
SJ | No description available
SK | No description available
SL | No description available
SM | No description available
SN | No description available
SO | No description available
SP | No description available
SQ | No description available
SR | No description available
SS | No description available
ST | No description available
SU | No description available
SV | No description available
SW | No description available
SX | No description available
SY | No description available
SZ | No description available
Sa | No description available
Sb | No description available
Sc | No description available
Sd | No description available
Se | No description available
Sf | No description available
Sg | No description available
Sh | No description available
Si | No description available
Sk | No description available
Sl | No description available
Sm | No description available
Sn | No description available
So | No description available
Sp | No description available
Sq | No description available
Sr | No description available
St | No description available
Sv | No description available
Sw | No description available
Sx | No description available
Sy | No description available
T0 | No description available
T1 | No description available
T2 | No description available
T3 | No description available
T4 | No description available
T5 | No description available
T6 | No description available
T7 | No description available
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TA | No description available
TB | No description available
TC | No description available
TE | No description available
TF | No description available
TI | No description available
TJ fm | No description available
TK | No description available
TL | No description available
TM | No description available
TN | No description available
TO | No description available
TP | No description available
TQ | No description available
TR | No description available
TS ZV | No description available
TT | No description available
TU | No description available
TV | No description available
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TX | No description available
TY | No description available
Ta | No description available
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Te | No description available
Tf | No description available
Tg | No description available
Th | No description available
Ti | No description available
Tj | No description available
Tk | No description available
Tm | No description available
Tn | No description available
To | No description available
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Tr | No description available
Ts | No description available
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Tx | No description available
Ty | No description available
Tz | No description available
U1 | No description available
U2 | No description available
U4 | No description available
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UB | No description available
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UG | No description available
UH | No description available
UI | No description available
UK | No description available
UL | No description available
UM | No description available
UN | No description available
UO | No description available
UP | No description available
US | No description available
UT | No description available
UU | No description available
UW | No description available
UX | No description available
UY | No description available
UZ | No description available
Ua | No description available
Ud | No description available
Ue | No description available
Uf | No description available
Ug | No description available
Uh | No description available
Ui | No description available
Uj | No description available
Uk | No description available
Ul | No description available
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Un | No description available
Ur | No description available
Us | No description available
Ut | No description available
Uu | No description available
Uv | No description available
Uw | No description available
Ux | No description available
Uy | No description available
Uz | No description available
V0 | No description available
V1 | No description available
V2 | No description available
V3 | No description available
V4 | No description available
V5 | No description available
V6 | No description available
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VA | No description available
VB | No description available
VC | No description available
VD | No description available
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VH | No description available
VI | No description available
VJ | No description available
VL | No description available
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VV Zw | No description available
VW | No description available
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Va | No description available
Vb | No description available
Vc | No description available
Vd | No description available
Ve Vi | No description available
Vf | No description available
Vg Xg | No description available
Vh | No description available
Vj | No description available
Vk | No description available
Vl | No description available
Vm | No description available
Vn | No description available
Vo | No description available
Vp | No description available
Vq | No description available
Vr | No description available
Vs | No description available
Vt | No description available
Vu | No description available
Vv | No description available
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Vy | No description available
Vz | No description available
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WD ad | No description available
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WY | No description available
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Wc bT | No description available
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Wl | No description available
Wm | No description available
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Wp | No description available
Wq | No description available
Wr | No description available
Ws eH | No description available
Wt | No description available
Wu | No description available
Wv Zn | No description available
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X1 | No description available
X2 | No description available
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X4 | No description available
X5 | No description available
X6 | No description available
X7 XH ca | No description available
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XB | No description available
XC | No description available
XD | No description available
XE | No description available
XF | No description available
XG | No description available
XJ | No description available
XL | No description available
XM | No description available
XN | No description available
XO | No description available
XR | No description available
XS | No description available
XT | No description available
XU | No description available
XV | No description available
XW | No description available
XX | No description available
XY | No description available
XZ | No description available
Xa | No description available
Xb | No description available
Xc | No description available
Xd | No description available
Xe | No description available
Xf | No description available
Xh | No description available
Xi | No description available
Xj | No description available
Xk | No description available
Xm | No description available
Xn | No description available
Xo | No description available
Xp | No description available
Xq | No description available
Xr | No description available
Xs | No description available
Xt | No description available
Xu | No description available
Xx | No description available
Xy | No description available
Xz | No description available
Y Z a h | No description available
Y0 | No description available
Y1 | No description available
Y2 | No description available
Y3 | No description available
Y4 | No description available
Y5 | No description available
Y6 | No description available
Y7 | No description available
Y8 | No description available
YA | No description available
YB | No description available
YC | No description available
YE Zf | No description available
YF | No description available
YG | No description available
YH | No description available
YI | No description available
YJ | No description available
YK | No description available
YL | No description available
YM | No description available
YN | No description available
YO | No description available
YP | No description available
YQ | No description available
YR | No description available
YT | No description available
YV | No description available
YW | No description available
YX | No description available
YY | No description available
YZ | No description available
Yc | No description available
Yd | No description available
Ye | No description available
Yf | No description available
Yg | No description available
Yh | No description available
Yj | No description available
Yk | No description available
Yl | No description available
Ym | No description available
Yp | No description available
Yr | No description available
Ys | No description available
Yt | No description available
Yu | No description available
Yv | No description available
Yw | No description available
Yx | No description available
Yz | No description available
Z0 | No description available
Z1 | No description available
Z2 | No description available
Z3 | No description available
Z4 | No description available
Z5 | No description available
Z6 | No description available
Z7 | No description available
Z8 cb | No description available
Z9 | No description available
ZA | No description available
ZB | No description available
ZC | No description available
ZD | No description available
ZE ci | No description available
ZF | No description available
ZG | No description available
ZJ | No description available
ZK | No description available
ZL | No description available
ZM fe | No description available
ZN | No description available
ZO | No description available
ZP | No description available
ZQ | No description available
ZR | No description available
ZS | No description available
ZT | No description available
ZW | No description available
ZX | No description available
ZY | No description available
ZZ | No description available
Za | No description available
Zb | No description available
Zd | No description available
Ze | No description available
Zg | No description available
Zh | No description available
Zi | No description available
Zj | No description available
Zk | No description available
Zl | No description available
Zm | No description available
Zo | No description available
Zp | No description available
Zq | No description available
Zt | No description available
Zu | No description available
Zv | No description available
Zx | No description available
Zy | No description available
a0 | No description available
a1 | No description available
a2 | No description available
a4 | No description available
a5 | No description available
a6 | No description available
a8 | No description available
aA | No description available
aB cl | No description available
aC | No description available
aD | No description available
aE | No description available
aF | No description available
aG | No description available
aI | No description available
aJ | No description available
aL | No description available
aM | No description available
aO | No description available
aP | No description available
aQ | No description available
aR | No description available
aS | No description available
aV | No description available
aW | No description available
aZ | No description available
ab | No description available
ac | No description available
ae | No description available
ag | No description available
ah | No description available
ai | No description available
ak | No description available
al | No description available
am | No description available
an | No description available
ao | No description available
ap | No description available
aq | No description available
ar | No description available
as | No description available
at | No description available
au | No description available
av | No description available
ax | No description available
ay | No description available
az | No description available
b g | No description available
b0 | No description available
b1 | No description available
b2 | No description available
b3 | No description available
b4 | No description available
b5 | No description available
b6 | No description available
b7 | No description available
b8 | No description available
b9 | No description available
bA | No description available
bC | No description available
bE | No description available
bF | No description available
bG | No description available
bH | No description available
bI | No description available
bJ | No description available
bK | No description available
bL | No description available
bM | No description available
bN | No description available
bO | No description available
bP | No description available
bR | No description available
bS | No description available
bU | No description available
bV | No description available
bW | No description available
bX | No description available
bY | No description available
bZ | No description available
ba | No description available
bc | No description available
be | No description available
bf | No description available
bg | No description available
bk | No description available
bl | No description available
bm | No description available
bn | No description available
bo | No description available
bp | No description available
bq | No description available
br | No description available
bt | No description available
bu | No description available
bv | No description available
bx | No description available
by | No description available
c d e f j k | No description available
c0 | No description available
c1 | No description available
c2 | No description available
c3 | No description available
c4 | No description available
c5 | No description available
c6 | No description available
c9 | No description available
cA | No description available
cB | No description available
cC | No description available
cD | No description available
cE | No description available
cF | No description available
cH | No description available
cI | No description available
cJ | No description available
cK | No description available
cL | No description available
cO | No description available
cP | No description available
cQ | No description available
cS | No description available
cT | No description available
cU | No description available
cV | No description available
cW | No description available
cX e5 | No description available
cY | No description available
cZ | No description available
cc | No description available
cd | No description available
cg | No description available
ch | No description available
cj | No description available
cm | No description available
cn | No description available
co | No description available
cp | No description available
cq | No description available
cr | No description available
cs | No description available
cu | No description available
cv | No description available
cw | No description available
cx | No description available
cy | No description available
cz | No description available
d0 | No description available
d3 | No description available
d4 | No description available
d5 | No description available
d6 | No description available
d7 | No description available
d8 | No description available
d9 | No description available
dA | No description available
dB | No description available
dC | No description available
dD | No description available
dE fb | No description available
dF | No description available
dG | No description available
dI | No description available
dJ | No description available
dK | No description available
dL | No description available
dM | No description available
dN | No description available
dO ix | No description available
dP | No description available
dQ | No description available
dS | No description available
dT | No description available
dU | No description available
dV | No description available
dW | No description available
dX | No description available
dY | No description available
dZ | No description available
da | No description available
db | No description available
dc | No description available
dd | No description available
de | No description available
df | No description available
dg | No description available
dh | No description available
dj | No description available
dl | No description available
dm | No description available
dn | No description available
do | No description available
dq | No description available
dr | No description available
ds | No description available
du | No description available
dv | No description available
dw | No description available
dx | No description available
dz | No description available
e0 | No description available
e1 | No description available
e3 | No description available
e4 | No description available
e7 | No description available
e8 | No description available
e9 | No description available
eA | No description available
eB | No description available
eC | No description available
eD | No description available
eE | No description available
eG | No description available
eI | No description available
eK | No description available
eL | No description available
eM | No description available
eO | No description available
eQ | No description available
eS | No description available
eT | No description available
eU | No description available
eV | No description available
eW | No description available
eX | No description available
eZ | No description available
ea | No description available
eb | No description available
ec | No description available
ed | No description available
ee | No description available
ef | No description available
eg | No description available
eh | No description available
ej | No description available
ek | No description available
el | No description available
em | No description available
eo | No description available
ep | No description available
eq | No description available
er | No description available
es | No description available
et | No description available
eu ih | No description available
ev | No description available
ex | No description available
ey | No description available
ez | No description available
f1 | No description available
f2 | No description available
f4 | No description available
f5 | No description available
f6 | No description available
f7 | No description available
f8 | No description available
fB | No description available
fC | No description available
fF | No description available
fH | No description available
fI | No description available
fJ | No description available
fK | No description available
fL | No description available
fM | No description available
fN | No description available
fP | No description available
fQ | No description available
fR | No description available
fS | No description available
fT | No description available
fU | No description available
fV | No description available
fX | No description available
fY | No description available
fa | No description available
fc | No description available
fd | No description available
fg | No description available
fh | No description available
fi | No description available
fj | No description available
fk | No description available
fl | No description available
fo | No description available
fp | No description available
fq | No description available
fr | No description available
fs | No description available
ft | No description available
fv | No description available
fw | No description available
fx | No description available
fy | No description available
g0 | No description available
g2 | No description available
g3 | No description available
g4 | No description available
g5 | No description available
g9 | No description available
gA | No description available
gC | No description available
gD | No description available
gF | No description available
gI | No description available
gJ | No description available
gL | No description available
gM | No description available
gN | No description available
gO | No description available
gP | No description available
gQ | No description available
gR | No description available
gS | No description available
gU | No description available
gV | No description available
gX | No description available
gY | No description available
gZ | No description available
ga | No description available
gb | No description available
gc | No description available
gd | No description available
gf | No description available
gg | No description available
gh | No description available
gi | No description available
gj | No description available
gk | No description available
gl | No description available
gm | No description available
gn | No description available
gp | No description available
gq | No description available
gr | No description available
gv | No description available
gx | No description available
gy | No description available
h0 | No description available
h1 | No description available
h2 | No description available
h4 | No description available
h6 | No description available
h8 | No description available
h9 | No description available
hB | No description available
hC | No description available
hD | No description available
hG | No description available
hI | No description available
hJ | No description available
hK | No description available
hL | No description available
hM | No description available
hN | No description available
hR | No description available
hS | No description available
hV | No description available
hW | No description available
hX | No description available
hY | No description available
hZ | No description available
hb | No description available
hc | No description available
hd | No description available
hf | No description available
hg | No description available
hh | No description available
hl | No description available
hm | No description available
ho | No description available
hp | No description available
hq | No description available
hr | No description available
hs | No description available
ht | No description available
hv | No description available
hw | No description available
hy | No description available
i p | No description available
i0 | No description available
iA | No description available
iB | No description available
iE | No description available
iF | No description available
iG | No description available
iH | No description available
iI | No description available
iL | No description available
iM | No description available
iP | No description available
iQ | No description available
iR | No description available
iS | No description available
iT | No description available
iU | No description available
iV | No description available
iX | No description available
iY | No description available
iZ | No description available
ib | No description available
ic | No description available
id | No description available
ii | No description available
ij | No description available
ik | No description available
im | No description available
in | No description available
io | No description available
ip | No description available
iq | No description available
ir | No description available
is | No description available
it | No description available
iv | No description available
iy | No description available
iz | No description available
l t u | No description available
> color bfactor palette alphafold
215622 atoms, 28741 residues, atom bfactor range 0 to 100
> set bgColor white
> volume showOutlineBox true
No volumes specified
> view orient
> ui tool show "Side View"
> select /SJ:14399-14415
111 atoms, 116 bonds, 17 residues, 1 model selected
> select /SJ:14399-14415
111 atoms, 116 bonds, 17 residues, 1 model selected
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right rotate
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /Yg:21480-21546
535 atoms, 550 bonds, 67 residues, 1 model selected
> select /P1:10902-11069
1213 atoms, 1242 bonds, 168 residues, 1 model selected
> select /P1:10902-11069
1213 atoms, 1242 bonds, 168 residues, 1 model selected
> select /QP:11790-11848
475 atoms, 488 bonds, 59 residues, 1 model selected
> select /QP:11790-11848
475 atoms, 488 bonds, 59 residues, 1 model selected
> open /Users/suzanne/Desktop/tip_final_cut_300box.mrc
Opened tip_final_cut_300box.mrc as #2, grid size 300,300,300, pixel 1.1, shown
at level 0.0348, step 2, values float32
> ui mousemode right zoom
> volume #2 step 1
> volume #2 level 0.02692
> fitmap #1 inMap #2
Fit molecule output_fixed_aa 2.cif (#1) to map tip_final_cut_300box.mrc (#2)
using 215622 atoms
average map value = 0.02671, steps = 848
shifted from previous position = 191
rotated from previous position = 0.00508 degrees
atoms outside contour = 121072, contour level = 0.026916
Position of output_fixed_aa 2.cif (#1) relative to tip_final_cut_300box.mrc
(#2) coordinates:
Matrix rotation and translation
1.00000000 0.00002159 0.00000464 -81.40507442
-0.00002159 1.00000000 -0.00008592 -90.19725255
-0.00000464 0.00008592 1.00000000 -147.43308133
Axis 0.96851623 0.05232851 -0.24338865
Axis point 0.00000000 1850997.84024081 -1020853.02482089
Rotation angle (degrees) 0.00508276
Shift along axis -47.67848577
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.22
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
Boot ROM Version: 1715.81.2.0.0 (iBridge: 19.16.10744.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1715)
Kernel Version: Darwin 19.6.0
Time since boot: 21:25
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 3 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics |
Apple graphics driver crash.
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