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Opened 3 years ago
Closed 3 years ago
#7226 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.4.dev202203170703 (2022-03-17 07:03:24 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00001fa8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001380 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _Windows fatal exception: code 0xha8001010e
ndle_tWindows fatal exception: acode 0xs8001010ek
s
File Windows fatal exception: "code 0xC8001010e:
\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 4code 0x.8001010ed
evWindows fatal exception: 2code 0x08001010e2
203170703\bin\lib\threading.py", line 910 in run
File "C:\PrWindows fatal exception: code 0xogra8001010e
m FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: .4code 0x8001010e.
devWindows fatal exception: 2code 0x08001010e2
20Windows fatal exception: 3code 0x18001010e7
07Windows fatal exception: 0code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xt8001010eh
reading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002e9c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703Windows fatal exception: code 0x\b8001010e
in\Windows fatal exception: lcode 0xi8001010eb
\mWindows fatal exception: ucode 0xl8001010et
ipWindows fatal exception: rcode 0xo8001010ec
esWindows fatal exception: scode 0xi8001010en
g\Windows fatal exception: pcode 0xo8001010eo
l.Windows fatal exception: pcode 0xy8001010e"
, line 499Windows fatal exception: in code 0x_8001010ew
aiWindows fatal exception: tcode 0x_f8001010e
or_uWindows fatal exception: pcode 0xd8001010ea
tes
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Windows fatal exception: code 0xF8001010ei
les\Windows fatal exception: Ccode 0xh8001010ei
merWindows fatal exception: code 0xaX 1.48001010e.
devWindows fatal exception: 20220code 0x38001010e
1Windows fatal exception: 7code 0x08001010e7
03Windows fatal exception: \code 0xb8001010ein\li
b\tWindows fatal exception: hcode 0xr8001010ee
adWindows fatal exception: icode 0xn8001010e
g.pWindows fatal exception: ycode 0x"8001010e, line
930 in Windows fatal exception: _code 0xb8001010eo
otstrap
Thread 0x00001e50 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000bb4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002d04 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\Windows fatal exception: code 0xCh8001010e
imeWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x48001010e.
deWindows fatal exception: vcode 0x28001010e0
22Windows fatal exception: 0code 0x38001010e1
70Windows fatal exception: 7code 0x08001010e3
\bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010ethr
eadWindows fatal exception: icode 0xn8001010eg
.pyWindows fatal exception: "code 0x, line 8001010e930
in _bootstrap
Thread 0x00002998 (most recent call first):
File "C:Windows fatal exception: code 0x\P8001010e
roWindows fatal exception: gcode 0xram8001010e
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x48001010e.
deWindows fatal exception: vcode 0x28001010e0
22Windows fatal exception: 0code 0x38001010e1
70Windows fatal exception: 7code 0x08001010e3
\bWindows fatal exception: icode 0xn8001010e\
lib\multiprocessWindows fatal exception: code 0xin8001010e
g\Windows fatal exception: pcode 0xo8001010eo
l.Windows fatal exception: pcode 0xy8001010e"
, line 114Windows fatal exception: code 0xWindows fatal exception: code 0x in w8001010e
8001010e
Windows fatal exception: code 0xorWindows fatal exception: code 0x8001010e
kWindows fatal exception: 8001010e
eWindows fatal exception: code 0x8001010er
code 0x8001010e
File Windows fatal exception: "code 0x
CWindows fatal exception: 8001010e
:\Windows fatal exception: Pcode 0x8001010ecode 0x8001010ero
Windows fatal exception: gWindows fatal exception: rcode 0x8001010ecode 0x8001010eam
Windows fatal exception: Windows fatal exception: code 0x8001010eFicode 0x8001010e
lWindows fatal exception: e
code 0xWindows fatal exception: s\8001010e
code 0x8001010eC
himeWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x48001010e.
dWindows fatal exception: code 0xev8001010e
20Windows fatal exception: Windows fatal exception: code 0x28001010e2
0code 0xWindows fatal exception: 318001010e
code 0xWindows fatal exception: 708001010e7
03code 0x8001010eWindows fatal exception: code 0x\b
8001010e
inWindows fatal exception: \Windows fatal exception: code 0xcode 0x8001010el
8001010e
iWindows fatal exception: Windows fatal exception: code 0x8001010eb
\code 0xt8001010eWindows fatal exception:
code 0xhWindows fatal exception: r8001010e
code 0x8001010eeaWindows fatal exception: code 0x
dWindows fatal exception: 8001010e
inWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x9108001010e in
ruWindows fatal exception: ncode 0x
8001010e File
"C:\Program Files\Chimercode 0xaX 1.4.dev2028001010e2
031Windows fatal exception: 7code 0x08001010e7
03Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb
\threading.py", line 973 in Windows fatal exception: code 0x_b8001010e
ooWindows fatal exception: tcode 0xs8001010et
raWindows fatal exception: pcode 0x_8001010ei
nnWindows fatal exception: ecode 0xr8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\Windows fatal exception: code 0x8001010e8001010e
CWindows fatal exception: hcode 0xi8001010emWindows fatal exception: code 0x
8001010e
eWindows fatal exception: Windows fatal exception: code 0xracode 0x8001010e8001010e
X Windows fatal exception: code 0x1.8001010e
4.Windows fatal exception: dcode 0xe8001010ev
20Windows fatal exception: 2Windows fatal exception: code 0xcode 0x8001010e8001010e20
Windows fatal exception: code 0x318001010e
70Windows fatal exception: 7code 0x08001010e3
Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
\Windows fatal exception: Windows fatal exception: code 0xbicode 0xn8001010e\8001010e
Windows fatal exception: lWindows fatal exception: code 0x8001010eibcode 0x8001010e
\t
Windows fatal exception: hWindows fatal exception: rcode 0x8001010ecode 0x
8001010eea
diWindows fatal exception: ncode 0xg8001010e.
pyWindows fatal exception: "code 0x, line Windows fatal exception: code 0x8001010e8001010e930 in
Windows fatal exception: _bcode 0x8001010eWindows fatal exception:
code 0xoo8001010e
tstWindows fatal exception: rcode 0xa8001010ep
Windows fatal exception: Thread 0xcode 0x000006748001010e (most recent call first):
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
himWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e4
.dev202203170703\bWindows fatal exception: code 0xin8001010e\
libWindows fatal exception: \code 0xm8001010eu
ltWindows fatal exception: icode 0xp8001010er
ocWindows fatal exception: ecode 0x8001010ess
inWindows fatal exception: gcode 0x\8001010ep
ooWindows fatal exception: lcode 0x.8001010ep
y"Windows fatal exception: , line code 0x1148001010e in
woWindows fatal exception: rcode 0xk8001010ee
r
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eogr
am Files\ChimeraWindows fatal exception: code 0xX 8001010e
1.4Windows fatal exception: .code 0xd8001010ee
v20Windows fatal exception: 2code 0x28001010e0
31Windows fatal exception: 7code 0x08001010e7
03Windows fatal exception: \code 0xb8001010ei
n\Windows fatal exception: lcode 0xi8001010eb\
thrWindows fatal exception: ecode 0xa8001010ed
inWindows fatal exception: gcode 0x.8001010ep
y"Windows fatal exception: , line code 0x9108001010e in
ruWindows fatal exception: ncode 0x
8001010e File
"C:\Program FilWindows fatal exception: code 0xes8001010e
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 4code 0x.8001010ed
evWindows fatal exception: 2code 0x08001010e2
20Windows fatal exception: 3code 0x18001010e7
07Windows fatal exception: 0code 0x38001010e\
biWindows fatal exception: ncode 0x\8001010el
ibWindows fatal exception: \code 0xt8001010eh
reWindows fatal exception: acode 0xd8001010ei
ng.py", line 973 in _bootstrap_Windows fatal exception: code 0xin8001010e
neWindows fatal exception: rcode 0x
8001010e File
"C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: Ccode 0xh8001010ei
meWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x48001010e.
deWindows fatal exception: code 0xv28001010e
022Windows fatal exception: code 0x8001010e
03170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001228 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002740 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004fa0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001e20 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00001fa8 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 576 in _handle_results
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001380 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 528 in _handle_tasks
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002e9c (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 816 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\connection.py", line 884 in wait
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 499 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 519 in _handle_workers
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001e50 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000bb4 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002d04 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002998 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00000674 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001228 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00002740 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00004fa0 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 910 in run
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 973 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\threading.py", line 930 in _bootstrap
Thread 0x00001e20 (most recent call first):
File "C:\Program Files\ChimeraX 1.4.dev202203170703\bin\lib\site-packages\chimerax\atomic\molc.py", line 198 in get_prop
Windows fatal exception: access violation
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
===== Log before crash start =====
UCSF ChimeraX version: 1.4.dev202203170703 (2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3cxn
Summary of feedback from opening 3cxn fetched from pdb
---
note | Fetching compressed mmCIF 3cxn from
http://files.rcsb.org/download/3cxn.cif
3cxn title:
Structure of the Urease Accessory Protein UreF from Helicobacter pylori [more
info...]
Chain information for 3cxn #1
---
Chain | Description | UniProt
A B C | Urease accessory protein ureF | UREF_HELPY
Non-standard residues in 3cxn #1
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
3cxn mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> open 3sf5
Summary of feedback from opening 3sf5 fetched from pdb
---
note | Fetching compressed mmCIF 3sf5 from
http://files.rcsb.org/download/3sf5.cif
3sf5 title:
Crystal Structure of Helicobacter pylori Urease Accessory Protein UreF/H
complex [more info...]
Chain information for 3sf5 #2
---
Chain | Description | UniProt
A C | Urease accessory protein ureF | UREF_HELPY
B D | Urease accessory protein ureH | UREH_HELPY
Non-standard residues in 3sf5 #2
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
PEG — di(hydroxyethyl)ether
SO4 — sulfate ion
> open 4hi0
Summary of feedback from opening 4hi0 fetched from pdb
---
warnings | Unknown polymer entity '4' near line 12408
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
4hi0 title:
Crystal Structure of Helicobacter pylori Urease Accessory Protein UreF/H/G
complex [more info...]
Chain information for 4hi0 #3
---
Chain | Description | UniProt
A C | Urease accessory protein UreF | UREF_HELPY
B D | Urease accessory protein UreH | UREH_HELPY
E F | Urease accessory protein UreG | UREG_HELPY
> hide atoms
> show cartoons
> ui tool show Matchmaker
> matchmaker #2-3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3cxn, chain C (#1) with 3sf5, chain C (#2), sequence alignment
score = 1218.3
RMSD between 193 pruned atom pairs is 0.618 angstroms; (across all 204 pairs:
0.955)
Matchmaker 3cxn, chain C (#1) with 4hi0, chain A (#3), sequence alignment
score = 1211.1
RMSD between 189 pruned atom pairs is 0.634 angstroms; (across all 201 pairs:
1.013)
> select #1/B:214
7 atoms, 7 bonds, 1 residue, 1 model selected
> select up
124 atoms, 125 bonds, 15 residues, 1 model selected
> select up
1656 atoms, 1683 bonds, 209 residues, 1 model selected
> select up
1847 atoms, 1688 bonds, 395 residues, 1 model selected
> select up
5313 atoms, 4988 bonds, 1022 residues, 1 model selected
> select down
1847 atoms, 1688 bonds, 395 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> camera ortho
> set bgColor white
> set bgColor #ffffff00
> lighting shadows true
> lighting shadows false
> graphics silhouettes true
> show surfaces
> help help:user
> transparency 90 target s
> transparency 95 target s
> hide surfaces
> show surfaces
> hide surfaces
Drag select of 43 residues
> turn y 180
Drag select of 59 residues
> select up
1118 atoms, 1121 bonds, 140 residues, 6 models selected
> select up
5071 atoms, 5151 bonds, 638 residues, 6 models selected
> select up
5532 atoms, 5353 bonds, 923 residues, 6 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5532 atoms, 5353 bonds, 923 residues, 15 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5532 atoms, 5353 bonds, 923 residues, 15 models selected
> ui tool show "Color Actions"
> color sel brown
> color sel maroon
Drag select of 24 residues
> select up
1125 atoms, 1128 bonds, 141 residues, 6 models selected
> select up
5271 atoms, 5358 bonds, 663 residues, 6 models selected
> select up
5568 atoms, 5387 bonds, 931 residues, 6 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5568 atoms, 5387 bonds, 931 residues, 15 models selected
> color sel chocolate
Drag select of 63 residues
> select up
1109 atoms, 1121 bonds, 139 residues, 4 models selected
> select up
4049 atoms, 4128 bonds, 515 residues, 4 models selected
> select up
4160 atoms, 4142 bonds, 612 residues, 4 models selected
> select up
19058 atoms, 18859 bonds, 2864 residues, 4 models selected
> select down
4160 atoms, 4142 bonds, 612 residues, 12 models selected
> color sel orange red
Drag select of 49 residues
> select up
811 atoms, 813 bonds, 103 residues, 4 models selected
> select up
4055 atoms, 4133 bonds, 516 residues, 4 models selected
> color sel tan
> select clear
Drag select of 7 residues
> select clear
> select #3/F:161
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
115 atoms, 114 bonds, 14 residues, 2 models selected
> select up
1509 atoms, 1532 bonds, 196 residues, 2 models selected
> select up
1549 atoms, 1562 bonds, 209 residues, 2 models selected
> select up
11005 atoms, 10890 bonds, 1661 residues, 2 models selected
> select down
1549 atoms, 1562 bonds, 209 residues, 7 models selected
> color sel medium sea green
> color sel lime green
> color sel olive drab
> select #3/E:159
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
115 atoms, 114 bonds, 14 residues, 2 models selected
> select up
1509 atoms, 1532 bonds, 196 residues, 2 models selected
> color sel dark turquoise
> color sel medium aquamarine
> color sel cadet blue
> color sel dark sea green
> select clear
> select ::name="GDP"
56 atoms, 60 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 56 atom styles
> color sel byelement
> select clear
> show surfaces
> transparency 95 target s
> select
22524 atoms, 22159 bonds, 1 pseudobond, 3491 residues, 4 models selected
> cofr sel
> select clear
> turn x 90
> turn x -90
> hide #!1 models
> hide #!2 models
> select ::name="HOH"
726 atoms, 726 residues, 3 models selected
> select #3:HOH
303 atoms, 303 residues, 1 model selected
> show sel atoms
> color sel blue
> style sel ball
Changed 303 atom styles
> style sel stick
Changed 303 atom styles
> style sel sphere
Changed 303 atom styles
> style sel ball
Changed 303 atom styles
> hide sel atoms
> select clear
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!1 models
> show #!2 models
> show #!3 models
> save C:/Users/vog25/Desktop/UreF_UreDF_UreDFG_ribbons_surface.cxs
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> hide #1.1 models
> save C:/Users/vog25/Desktop/UreF_UreDF_UreDFG_ribbons_surface.cxs
> save C:/Users/vog25/Desktop/UreF_3CXN.png width 4000 height 2562 supersample
> 4
> hide #!1 models
> show #!2 models
> save C:/Users/vog25/Desktop/UreFD_3SF5.png width 4000 height 2562
> supersample 4
> hide #!2 models
> show #!3 models
> save C:/Users/vog25/Desktop/UreFDG_4HI0.png width 4000 height 2562
> supersample 4
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4.dev202203170703 (2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
> open C:\\\Users\\\vog25\\\Desktop\\\UreF_UreDF_UreDFG_ribbons_surface.cxs
Log from Wed Jul 6 14:38:47 2022UCSF ChimeraX version: 1.4.dev202203170703
(2022-03-17)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 3cxn
Summary of feedback from opening 3cxn fetched from pdb
---
note | Fetching compressed mmCIF 3cxn from
http://files.rcsb.org/download/3cxn.cif
3cxn title:
Structure of the Urease Accessory Protein UreF from Helicobacter pylori [more
info...]
Chain information for 3cxn #1
---
Chain | Description | UniProt
A B C | Urease accessory protein ureF | UREF_HELPY
Non-standard residues in 3cxn #1
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
3cxn mmCIF Assemblies
---
1| author_and_software_defined_assembly
2| author_and_software_defined_assembly
> open 3sf5
Summary of feedback from opening 3sf5 fetched from pdb
---
note | Fetching compressed mmCIF 3sf5 from
http://files.rcsb.org/download/3sf5.cif
3sf5 title:
Crystal Structure of Helicobacter pylori Urease Accessory Protein UreF/H
complex [more info...]
Chain information for 3sf5 #2
---
Chain | Description | UniProt
A C | Urease accessory protein ureF | UREF_HELPY
B D | Urease accessory protein ureH | UREH_HELPY
Non-standard residues in 3sf5 #2
---
GOL — glycerol (glycerin; propane-1,2,3-triol)
PEG — di(hydroxyethyl)ether
SO4 — sulfate ion
> open 4hi0
Summary of feedback from opening 4hi0 fetched from pdb
---
warnings | Unknown polymer entity '4' near line 12408
Missing or incomplete entity_poly_seq table. Inferred polymer connectivity.
4hi0 title:
Crystal Structure of Helicobacter pylori Urease Accessory Protein UreF/H/G
complex [more info...]
Chain information for 4hi0 #3
---
Chain | Description | UniProt
A C | Urease accessory protein UreF | UREF_HELPY
B D | Urease accessory protein UreH | UREH_HELPY
E F | Urease accessory protein UreG | UREG_HELPY
> hide atoms
> show cartoons
> ui tool show Matchmaker
> matchmaker #2-3 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 3cxn, chain C (#1) with 3sf5, chain C (#2), sequence alignment
score = 1218.3
RMSD between 193 pruned atom pairs is 0.618 angstroms; (across all 204 pairs:
0.955)
Matchmaker 3cxn, chain C (#1) with 4hi0, chain A (#3), sequence alignment
score = 1211.1
RMSD between 189 pruned atom pairs is 0.634 angstroms; (across all 201 pairs:
1.013)
> select #1/B:214
7 atoms, 7 bonds, 1 residue, 1 model selected
> select up
124 atoms, 125 bonds, 15 residues, 1 model selected
> select up
1656 atoms, 1683 bonds, 209 residues, 1 model selected
> select up
1847 atoms, 1688 bonds, 395 residues, 1 model selected
> select up
5313 atoms, 4988 bonds, 1022 residues, 1 model selected
> select down
1847 atoms, 1688 bonds, 395 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> camera ortho
> set bgColor white
> set bgColor #ffffff00
> lighting shadows true
> lighting shadows false
> graphics silhouettes true
> show surfaces
> help help:user
> transparency 90 target s
> transparency 95 target s
> hide surfaces
> show surfaces
> hide surfaces
Drag select of 43 residues
> turn y 180
Drag select of 59 residues
> select up
1118 atoms, 1121 bonds, 140 residues, 6 models selected
> select up
5071 atoms, 5151 bonds, 638 residues, 6 models selected
> select up
5532 atoms, 5353 bonds, 923 residues, 6 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5532 atoms, 5353 bonds, 923 residues, 15 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5532 atoms, 5353 bonds, 923 residues, 15 models selected
> ui tool show "Color Actions"
> color sel brown
> color sel maroon
Drag select of 24 residues
> select up
1125 atoms, 1128 bonds, 141 residues, 6 models selected
> select up
5271 atoms, 5358 bonds, 663 residues, 6 models selected
> select up
5568 atoms, 5387 bonds, 931 residues, 6 models selected
> select up
22524 atoms, 22159 bonds, 3491 residues, 6 models selected
> select down
5568 atoms, 5387 bonds, 931 residues, 15 models selected
> color sel chocolate
Drag select of 63 residues
> select up
1109 atoms, 1121 bonds, 139 residues, 4 models selected
> select up
4049 atoms, 4128 bonds, 515 residues, 4 models selected
> select up
4160 atoms, 4142 bonds, 612 residues, 4 models selected
> select up
19058 atoms, 18859 bonds, 2864 residues, 4 models selected
> select down
4160 atoms, 4142 bonds, 612 residues, 12 models selected
> color sel orange red
Drag select of 49 residues
> select up
811 atoms, 813 bonds, 103 residues, 4 models selected
> select up
4055 atoms, 4133 bonds, 516 residues, 4 models selected
> color sel tan
> select clear
Drag select of 7 residues
> select clear
> select #3/F:161
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
115 atoms, 114 bonds, 14 residues, 2 models selected
> select up
1509 atoms, 1532 bonds, 196 residues, 2 models selected
> select up
1549 atoms, 1562 bonds, 209 residues, 2 models selected
> select up
11005 atoms, 10890 bonds, 1661 residues, 2 models selected
> select down
1549 atoms, 1562 bonds, 209 residues, 7 models selected
> color sel medium sea green
> color sel lime green
> color sel olive drab
> select #3/E:159
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
115 atoms, 114 bonds, 14 residues, 2 models selected
> select up
1509 atoms, 1532 bonds, 196 residues, 2 models selected
> color sel dark turquoise
> color sel medium aquamarine
> color sel cadet blue
> color sel dark sea green
> select clear
> select ::name="GDP"
56 atoms, 60 bonds, 2 residues, 1 model selected
> show sel atoms
> style sel ball
Changed 56 atom styles
> color sel byelement
> select clear
> show surfaces
> transparency 95 target s
> select
22524 atoms, 22159 bonds, 1 pseudobond, 3491 residues, 4 models selected
> cofr sel
> select clear
> turn x 90
> turn x -90
> hide #!1 models
> hide #!2 models
> select ::name="HOH"
726 atoms, 726 residues, 3 models selected
> select #3:HOH
303 atoms, 303 residues, 1 model selected
> show sel atoms
> color sel blue
> style sel ball
Changed 303 atom styles
> style sel stick
Changed 303 atom styles
> style sel sphere
Changed 303 atom styles
> style sel ball
Changed 303 atom styles
> hide sel atoms
> select clear
> hide #!3 models
> show #!2 models
> hide #!2 models
> show #!1 models
> show #!2 models
> show #!3 models
> save C:/Users/vog25/Desktop/UreF_UreDF_UreDFG_ribbons_surface.cxs
> hide #!2 models
> hide #!3 models
> show #!2 models
> hide #!2 models
> hide #1.1 models
> save C:/Users/vog25/Desktop/UreF_UreDF_UreDFG_ribbons_surface.cxs
——— End of log from Wed Jul 6 14:38:47 2022 ———
opened ChimeraX session
OpenGL version: 3.3.0 NVIDIA 472.98
OpenGL renderer: NVIDIA GeForce MX250/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Locale: it_IT.cp1252
Qt version: PyQt6 6.2.3, Qt 6.2.3
Qt platform: windows
Manufacturer: HP
Model: HP ProBook 450 G7
OS: Microsoft Windows 10 Pro (Build 19044)
Memory: 17,009,516,544
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-10510U CPU @ 1.80GHz
OSLanguage: it-IT
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.36.2
ChimeraX-AtomicLibrary: 6.1.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202203170703
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.9
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.16.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.30.0
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.2
kiwisolver: 1.4.0
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.28
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.7
PyQt6-commercial: 6.2.3
PyQt6-sip: 13.2.0
PyQt6-WebEngine-commercial: 6.2.1
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 303
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.1
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
Send2Trash: 1.8.0
SEQCROW: 1.4.2
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 3 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Hi Francesco,
--Eric