Opened 4 years ago

Closed 4 years ago

#6457 closed defect (duplicate)

Problem saving settings file

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Input/Output Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-3.10.0-1160.6.1.el7.x86_64-x86_64-with-centos-7.9.2009-Core
ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
Startup Errors  
---  
error | ChimeraX requires OpenGL graphics version 3.3.  
Your computer graphics driver provided version 2.1  
Try updating your graphics driver.  
warning | No statusbar messages will be shown due to inadequate OpenGL  
note | Updating list of available bundles failed: Internal Server Error  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 97, in __exit__  
os.replace(self._tmp_filename, self.name)  
FileNotFoundError: [Errno 2] No such file or directory:
'/home/beta/.config/ChimeraX/ModelPanel-1.tmp' ->
'/home/beta/.config/ChimeraX/ModelPanel-1'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 531, in start_tool  
ti = api._api_caller.start_tool(api, session, self, tool_info)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/toolshed/__init__.py", line 1587, in start_tool  
return cls._get_func(api, "start_tool")(session, ti.name)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/model_panel/__init__.py", line 21, in start_tool  
return model_panel(session, tool_name)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 345, in model_panel  
_mp = ModelPanel(session, tool_name)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/model_panel/tool.py", line 29, in __init__  
now = self.settings.last_use = time()  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/settings.py", line 190, in __setattr__  
ConfigFile.__setattr__(self, name, value)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/configfile.py", line 365, in __setattr__  
ConfigFile.save(self)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/configfile.py", line 315, in save  
self._config.write(f)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/safesave.py", line 109, in __exit__  
os.remove(self._tmp_filename)  
FileNotFoundError: [Errno 2] No such file or directory:
'/home/beta/.config/ChimeraX/ModelPanel-1.tmp'  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/core/tools.py",
line 379, in start_tools  
bi.start_tool(session, tool_name)  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 537, in start_tool  
"start_tool() failed for tool %s in bundle %s:\n%s" % (tool_name, self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Model Panel
in bundle ChimeraX-ModelPanel:  
[Errno 2] No such file or directory:
'/home/beta/.config/ChimeraX/ModelPanel-1.tmp'  
  
Tool "Model Panel" failed to start:  
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Model Panel
in bundle ChimeraX-ModelPanel:  
[Errno 2] No such file or directory:
'/home/beta/.config/ChimeraX/ModelPanel-1.tmp'  
  
File "/opt/UCSF/ChimeraX/lib/python3.7/site-
packages/chimerax/core/toolshed/info.py", line 537, in start_tool  
"start_tool() failed for tool %s in bundle %s:\n%s" % (tool_name, self.name,
str(e)))  
  
See log for complete Python traceback.  
  
UCSF ChimeraX version: 1.0 (2020-06-04)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /run/media/beta/DATA/Arvind/phenix_0p1G_THC/0p1Gly_THC.pdb

0p1Gly_THC.pdb title:  
0P1G32T [more info...]  
  
Chain information for 0p1Gly_THC.pdb #1  
---  
Chain | Description  
A B C D E | glycine receptor subunit ALPHAZ1  
  
Non-standard residues in 0p1Gly_THC.pdb #1  
---  
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)  
TCI —
(6AR,10AR)-6,6,9-trimethyl-3-pentyl-6A,7,8,10A-tetrahydro-6H-benzo[C]chromen-1-ol
(tetrahydrocannabinol)  
  




OpenGL version: unknown
Could not make opengl context current
Manufacturer: TYAN
Model: B7109F77DV14HR-2T-N
OS: CentOS Linux 7 Core
Architecture: 64bit ELF
CPU: 64 Intel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz
Cache Size: 22528 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           376G         23G        233G        287M        119G        351G
	Swap:          4.0G         62M        3.9G

Graphics:
	04:00.0 VGA compatible controller [0300]: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000] (rev 41)	
	Subsystem: ASPEED Technology, Inc. ASPEED Graphics Family [1a03:2000]	
	Kernel driver in use: ast
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.8

Change History (2)

comment:1 by pett, 4 years ago

Component: UnassignedInput/Output
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionProblem saving settings file

comment:2 by pett, 4 years ago

Resolution: duplicate
Status: acceptedclosed
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