The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [610]
Path: /Volumes/VOLUME/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [610]
User ID: 501
Date/Time: 2022-03-23 10:59:23.272 +0100
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Anonymous UUID: EE595A99-6D69-E7DC-EED0-546482C19A30
Time Awake Since Boot: 3700 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000010b359018
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [610]
VM Regions Near 0x10b359018:
Rosetta Generic 10b358000-10b359000 [ 4K] rw-/rwx SM=PRV
--> mapped file 10b359000-10b5be000 [ 2452K] r-x/rwx SM=COW Object_id=c9046f0d
mapped file 10b5be000-10b5f8000 [ 232K] rw-/rwx SM=COW Object_id=c8e9450d
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 dyld 0x0000000202f9da90 ImageLoaderMachO::usesTwoLevelNameSpace() const + 8
1 0x0000000102ebd01c ???
2 dyld 0x0000000202fa92ad ImageLoaderMachOCompressed::doBindFastLazySymbol(unsigned int, ImageLoader::LinkContext const&, void (*)(), void (*)()) + 45
3 dyld 0x0000000202f8754b dyld::fastBindLazySymbol(ImageLoader**, unsigned long) + 86
4 libdyld.dylib 0x00007fff20474ce8 _dyld_fast_stub_entry(void*, long) + 65
5 libdyld.dylib 0x00007fff20474c26 dyld_stub_binder + 282
6 ??? 0x000000010b5be1a8 ???
7 _multiarray_umath.cpython-39-darwin.so 000000000000000000 0 + 0
8 ??? 0x0000000000000001 0 + 1
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffe28a28 0x7ffdffe24000 + 18984
1 runtime 0x00007ffdffe2deec 0x7ffdffe24000 + 40684
2 runtime 0x00007ffdffe2f2c0 0x7ffdffe24000 + 45760
Thread 2:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 3:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 4:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 5:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 6:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 7:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 8:
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000010cb4ba9f ???
3 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 9:: ThreadPoolServiceThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff2042e1d2 kevent64 + 10
2 ??? 0x000000012d0b6cc7 ???
3 ??? 0x000000012d03f62b ???
4 ??? 0x000000012d0037cb ???
5 ??? 0x000000012d04aa94 ???
6 ??? 0x000000012d05ea7d ???
7 ??? 0x000000012d0a7e07 ???
8 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 10:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d054778 ???
4 ??? 0x000000012d055150 ???
5 ??? 0x000000012d054c44 ???
6 ??? 0x000000012d0a7e07 ???
7 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 11:: Chrome_IOThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff2042e1d2 kevent64 + 10
2 ??? 0x000000012d0b6cc7 ???
3 ??? 0x000000012d03f62b ???
4 ??? 0x000000012d0037cb ???
5 ??? 0x0000000130f83f06 ???
6 ??? 0x000000012d05ea7d ???
7 ??? 0x000000012d0a7e07 ???
8 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 13:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d054778 ???
4 ??? 0x000000012d055150 ???
5 ??? 0x000000012d054cd4 ???
6 ??? 0x000000012d0a7e07 ???
7 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 14:: CompositorTileWorker1
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff20427cde __psynch_cvwait + 10
2 ??? 0x000000012d0a3e18 ???
3 ??? 0x000000012e35b5f8 ???
4 ??? 0x000000012d0a7e07 ???
5 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 15:: Chrome_InProcGpuThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012cfd420f ???
4 ??? 0x000000012d03f62b ???
5 ??? 0x000000012d0037cb ???
6 ??? 0x000000012d05ea7d ???
7 ??? 0x000000012d0a7e07 ???
8 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 16:: Chrome_ChildIOThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff2042e1d2 kevent64 + 10
2 ??? 0x000000012d0b6cc7 ???
3 ??? 0x000000012d03f62b ???
4 ??? 0x000000012d0037cb ???
5 ??? 0x000000012d05ea7d ???
6 ??? 0x000000012d0a7e07 ???
7 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 17:: VizCompositorThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 19:: NetworkConfigWatcher
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 20:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012d05476a ???
5 ??? 0x000000012d055150 ???
6 ??? 0x000000012d054d34 ???
7 ??? 0x000000012d0a7e07 ???
8 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 21:: MemoryInfra
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 22:: NetworkConfigWatcher
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012cfd41db ???
5 ??? 0x000000012d03f62b ???
6 ??? 0x000000012d0037cb ???
7 ??? 0x000000012d05ea7d ???
8 ??? 0x000000012d0a7e07 ???
9 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 23:: com.apple.NSEventThread
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff20553855 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20551f0b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20551310 CFRunLoopRunSpecific + 567
5 ??? 0x00007fff22e0923a ???
6 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d0ac2cf ???
4 ??? 0x000000012d05476a ???
5 ??? 0x000000012d054e3d ???
6 ??? 0x000000012d054c74 ???
7 ??? 0x000000012d0a7e07 ???
8 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 25:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 26:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 27:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 28:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 29:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 30:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 31:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 32:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 33:
0 runtime 0x00007ffdffe467c8 0x7ffdffe24000 + 141256
Thread 34:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe946928f4 ???
1 libsystem_kernel.dylib 0x00007fff204252ba mach_msg_trap + 10
2 ??? 0x000000012d0ac492 ???
3 ??? 0x000000012d054778 ???
4 ??? 0x000000012d054e3d ???
5 ??? 0x000000012d054cd4 ???
6 ??? 0x000000012d0a7e07 ???
7 libsystem_pthread.dylib 0x00007fff2045a8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff20456443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x000000010b359000 rbx: 0x00007fff20474d1a rcx: 0x00007fff20474d1a rdx: 0x0000000203026298
rdi: 0x000000020302e3b0 rsi: 0x0000000000000e87 rbp: 0x00007f80d815fd20 rsp: 0x00007f80d815fd20
r8: 0x00007fff20474d33 r9: 0x88f87a276f6ffcb2 r10: 0x0000000203059eac r11: 0x000000010b5be1a8
r12: 0x88f87a276f6ffcb2 r13: 0x000000020302e3b0 r14: 0x0000000000000e87 r15: 0x0000000203026298
rip: 0x0000000202f9da90 rfl: 0x0000000000000202
Binary Images:
0 - 0xffffffffffffffff +_multiarray_umath.cpython-39-darwin.so (???) /Volumes/VOLUME/*/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x10ae47000 - 0x10ae96fff +libRosettaRuntime (203.58) /Library/Apple/*/libRosettaRuntime
0x202f82000 - 0x20301dfff dyld (852.2) /usr/lib/dyld
0x7ffdffe24000 - 0x7ffdffe53fff runtime (203.58) /usr/libexec/rosetta/runtime
0x7fff20192000 - 0x7fff20193fff libsystem_blocks.dylib (79) /usr/lib/system/libsystem_blocks.dylib
0x7fff20194000 - 0x7fff201c9fff libxpc.dylib (2038.120.1) /usr/lib/system/libxpc.dylib
0x7fff201ca000 - 0x7fff201e1fff libsystem_trace.dylib (1277.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff201e2000 - 0x7fff2027ffff libcorecrypto.dylib (1000.140.4) /usr/lib/system/libcorecrypto.dylib
0x7fff20280000 - 0x7fff202acfff libsystem_malloc.dylib (317.140.5) /usr/lib/system/libsystem_malloc.dylib
0x7fff202ad000 - 0x7fff202f1fff libdispatch.dylib (1271.120.2) /usr/lib/system/libdispatch.dylib
0x7fff202f2000 - 0x7fff2032bfff libobjc.A.dylib (824) /usr/lib/libobjc.A.dylib
0x7fff2032c000 - 0x7fff2032efff libsystem_featureflags.dylib (28.60.1) /usr/lib/system/libsystem_featureflags.dylib
0x7fff2032f000 - 0x7fff203b7fff libsystem_c.dylib (1439.141.1) /usr/lib/system/libsystem_c.dylib
0x7fff203b8000 - 0x7fff2040dfff libc++.1.dylib (905.6) /usr/lib/libc++.1.dylib
0x7fff2040e000 - 0x7fff20423fff libc++abi.dylib (905.6) /usr/lib/libc++abi.dylib
0x7fff20424000 - 0x7fff20453fff libsystem_kernel.dylib (7195.141.2) /usr/lib/system/libsystem_kernel.dylib
0x7fff20454000 - 0x7fff2045ffff libsystem_pthread.dylib (454.120.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff20460000 - 0x7fff2049bfff libdyld.dylib (852.2) /usr/lib/system/libdyld.dylib
0x7fff2049c000 - 0x7fff204a5fff libsystem_platform.dylib (254.80.2) /usr/lib/system/libsystem_platform.dylib
0x7fff204a6000 - 0x7fff204d1fff libsystem_info.dylib (542.40.3) /usr/lib/system/libsystem_info.dylib
0x7fff204d2000 - 0x7fff2096ffff com.apple.CoreFoundation (6.9 - 1777.103) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff2256b000 - 0x7fff227cafff libicucore.A.dylib (66112) /usr/lib/libicucore.A.dylib
0x7fff227cb000 - 0x7fff227d4fff libsystem_darwin.dylib (1439.141.1) /usr/lib/system/libsystem_darwin.dylib
0x7fff22bea000 - 0x7fff22bf5fff libsystem_notify.dylib (279.40.4) /usr/lib/system/libsystem_notify.dylib
0x7fff24b82000 - 0x7fff24b90fff libsystem_networkextension.dylib (1295.140.3) /usr/lib/system/libsystem_networkextension.dylib
0x7fff24bef000 - 0x7fff24c05fff libsystem_asl.dylib (385) /usr/lib/system/libsystem_asl.dylib
0x7fff26300000 - 0x7fff26307fff libsystem_symptoms.dylib (1431.140.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff28613000 - 0x7fff28623fff libsystem_containermanager.dylib (318.100.4) /usr/lib/system/libsystem_containermanager.dylib
0x7fff2932b000 - 0x7fff2932efff libsystem_configuration.dylib (1109.140.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff2932f000 - 0x7fff29333fff libsystem_sandbox.dylib (1441.141.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff29f33000 - 0x7fff29f35fff libquarantine.dylib (119.40.2) /usr/lib/system/libquarantine.dylib
0x7fff2a4d1000 - 0x7fff2a4ddfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff2a4de000 - 0x7fff2a4e2fff libsystem_coreservices.dylib (127.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff2a6df000 - 0x7fff2a6f1fff libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff2a6f2000 - 0x7fff2a73dfff libsystem_m.dylib (3186.100.3) /usr/lib/system/libsystem_m.dylib
0x7fff2a73f000 - 0x7fff2a744fff libmacho.dylib (980) /usr/lib/system/libmacho.dylib
0x7fff2a761000 - 0x7fff2a76cfff libcommonCrypto.dylib (60178.120.3) /usr/lib/system/libcommonCrypto.dylib
0x7fff2a76d000 - 0x7fff2a777fff libunwind.dylib (201) /usr/lib/system/libunwind.dylib
0x7fff2a778000 - 0x7fff2a77ffff liboah.dylib (203.58) /usr/lib/liboah.dylib
0x7fff2a780000 - 0x7fff2a78afff libcopyfile.dylib (173.40.2) /usr/lib/system/libcopyfile.dylib
0x7fff2a78b000 - 0x7fff2a792fff libcompiler_rt.dylib (102.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff2a793000 - 0x7fff2a795fff libsystem_collections.dylib (1439.141.1) /usr/lib/system/libsystem_collections.dylib
0x7fff2a796000 - 0x7fff2a798fff libsystem_secinit.dylib (87.60.1) /usr/lib/system/libsystem_secinit.dylib
0x7fff2a799000 - 0x7fff2a79bfff libremovefile.dylib (49.120.1) /usr/lib/system/libremovefile.dylib
0x7fff2a79c000 - 0x7fff2a79cfff libkeymgr.dylib (31) /usr/lib/system/libkeymgr.dylib
0x7fff2a79d000 - 0x7fff2a7a4fff libsystem_dnssd.dylib (1310.140.1) /usr/lib/system/libsystem_dnssd.dylib
0x7fff2a7a5000 - 0x7fff2a7aafff libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff2a7ab000 - 0x7fff2a7acfff libSystem.B.dylib (1292.120.1) /usr/lib/libSystem.B.dylib
0x7fff2a7ad000 - 0x7fff2a7b0fff libfakelink.dylib (3) /usr/lib/libfakelink.dylib
0x7fff2a7b1000 - 0x7fff2a7b1fff com.apple.SoftLinking (1.0 - 1) /System/Library/PrivateFrameworks/SoftLinking.framework/Versions/A/SoftLinking
0x7fff2dd09000 - 0x7fff2dd09fff liblaunch.dylib (2038.120.1) /usr/lib/system/liblaunch.dylib
0x7fff301a0000 - 0x7fff301a0fff libsystem_product_info_filter.dylib (8.40.1) /usr/lib/system/libsystem_product_info_filter.dylib
0x7fff5d246000 - 0x7fff5d255fff libSimplifiedChineseConverter.dylib (90) /System/Library/CoreServices/Encodings/libSimplifiedChineseConverter.dylib
Translated Code Information:
tmp0: 0x0000000102ebd880 tmp1: 0x0000000202fa92ad tmp2: 0x0000000102ebd01c
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=517.7M resident=0K(0%) swapped_out_or_unallocated=517.7M(100%)
Writable regions: Total=1.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 5760K 6
CG image 112K 15
CoreAnimation 96K 10
CoreGraphics 12K 2
CoreUI image data 2220K 17
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 339.2M 69
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 656.0M 6 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 6
OpenGL GLSL 384K 5
Rosetta Arena 4096K 2
Rosetta Generic 1492K 370
Rosetta IndirectBranch 1024K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 680K 68
Rosetta Thread Context 680K 68
STACK GUARD 36K 9
Stack 144.6M 34
Stack Guard 56.1M 25
VM_ALLOCATE 98.6M 156
VM_ALLOCATE (reserved) 160.1M 11 reserved VM address space (unallocated)
__DATA 532K 53
__DATA_CONST 2984K 42
__DATA_DIRTY 95K 24
__LINKEDIT 505.2M 7
__OBJC_RO 70.3M 1
__OBJC_RW 2480K 2
__TEXT 12.6M 52
__UNICODE 588K 1
dylib 1932K 19
dylib (reserved) 120K 12 reserved VM address space (unallocated)
mapped file 5.3G 835
shared memory 7396K 35
unshared pmap 9.9M 5
=========== ======= =======
TOTAL 7.8G 1982
TOTAL, minus reserved VM space 6.6G 1982
System Profile:
Network Service: Linksys USB3GIGV1, Ethernet, en6
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: LPDDR4
USB Device: USB 3.1 Bus
USB Device: Hub
USB Device: USB Keyboard
USB Device: Dell MS116 USB Optical Mouse
USB Device: Linksys USB3GIGV1
USB Device: Composite Device
USB Device: USB 3.1 Bus
Thunderbolt Bus: MacBook Air, Apple Inc.
Thunderbolt Bus: MacBook Air, Apple Inc.
Model: MacBookAir10,1, BootROM 6723.140.2, proc 8:4:4 processors, 16 GB, SMC
Graphics: kHW_AppleM1Item, Apple M1, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Jul 7 2021 00:48:27 version 18.50.40.10.7.8.121 FWID 01-f5ad2691
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 1 day 5:14
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
DELL U3219Q:
Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus)
UI Looks like: 2560 x 1440 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Looks like some kind of missing symbol problem in numpy. We have some other report of this, #6441, actually the same reporter UUID.
7 _multiarray_umath.cpython-39-darwin.so 000000000000000000 0 + 0