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[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 1.1.1 (2020-10-07 08:32:49 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20220312.cxs format session

Log from Sat Mar 12 22:49:11 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20220309.cxs format session

Log from Thu Mar 10 16:12:36 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/7.3s-R2K1-IJ1517B/Figure23-20220306-Ian-
> tmp1.cxs format session

Log from Wed Mar 9 14:13:02 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20220306-tmp3.cxs format
> session

Log from Mon Mar 7 16:15:11 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20220228-tmp2.cxs format
> session

Log from Wed Mar 2 13:53:28 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20210220-tmp.cxs format session

Log from Sun Feb 20 23:22:22 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20220220-tmp.cxs format session

Log from Sun Feb 20 17:32:03 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219-tmp.cxs format session

Log from Mon Jan 24 16:49:23 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219-tmp.cxs format session

Log from Mon Jan 10 10:01:00 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219-tmp.cxs format session

Log from Sat Jan 8 15:03:44 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219.cxs format session

Log from Fri Jan 7 13:38:36 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219.cxs format session

Log from Thu Jan 6 08:54:18 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219.cxs format session

Log from Tue Jan 4 17:48:03 2022UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219.cxs format session

Log from Thu Dec 30 23:35:48 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure23-20211219.cxs format session

Log from Tue Dec 21 09:17:11 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure5-20211101-tmp2.cxs format session

restore_snapshot for "Volume" returned None  

restore_snapshot for "VolumeSurface" returned None  

restore_snapshot for "Volume" returned None  

restore_snapshot for "VolumeSurface" returned None  

restore_snapshot for "Volume" returned None  

restore_snapshot for "VolumeSurface" returned None  

Log from Wed Nov 10 12:39:34 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101-tmp1.cxs format session

Log from Tue Nov 9 21:05:35 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101-tmp1.cxs format session

Log from Mon Nov 8 18:17:34 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101-tmp1.cxs format session

Log from Fri Nov 5 00:28:57 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101.cxs

Log from Tue Nov 2 13:30:12 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101.cxs

Log from Mon Nov 1 23:59:33 2021UCSF ChimeraX version: 1.1.1 (2020-10-07)  
© 2016-2020 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/chunyanwang/Desktop/P22/Figure1-20211101.py

ChimeraX cannot open a regular Chimera session.  
An exporter from Chimera to ChimeraX is being worked on but is not ready at
this time.  

> open /Users/chunyanwang/Desktop/P22/tailspike/tail-withspike-hp3.7-zflip.mrc
> format mrc

Opened tail-withspike-hp3.7-zflip.mrc, grid size 480,480,480, pixel 1.07,
shown at level 0.0126, step 2, values float32  

> volume #1 step 1

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> volume #2 level 0.01157

> volume #2 step 1

> volume #2 level 0.01575

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> open /Users/chunyanwang/Desktop/P22/tailspike/tailspike-3.9hp-zflip.mrc

Opened tailspike-3.9hp-zflip.mrc, grid size 480,480,480, pixel 1.07, shown at
level 2.8e-06, step 2, values float32  

> volume #3 step 1

> volume #4 step 1

> volume #5 step 1

> volume #6 step 1

> volume #7 step 1

> select #2

2 models selected  

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ~select #2

Nothing selected  

> select #2

2 models selected  

> hide #!2 models

> show #!2 models

> select #3

2 models selected  

> select #4

2 models selected  

> select #5

2 models selected  

> select #7

2 models selected  

> volume #6 level 0.01363

> volume #5 level 0.006695

> volume #7 level 0.01076

> volume #4 level 0.01028

> volume #3 level 0.009085

> lighting flat

> ~select #3

2 models selected  

> select #3

2 models selected  

> ui mousemode right "rotate selected models"

> ~select #2

2 models selected  

> select #2

2 models selected  

> ~select #5

2 models selected  

> select #5

2 models selected  

> ~select #7

2 models selected  

> select #7

2 models selected  

> ~select #4

2 models selected  

> select #4

2 models selected  

> fitmap #2 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
64020 points  
correlation = 0.7214, correlation about mean = 0.1661, overlap = 12.72  
steps = 160, shift = 3.42, angle = 9.54 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#2) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49253227 -0.87027531 -0.00573197 353.37712436  
0.87004393 0.49222203 0.02722187 -96.81943243  
-0.02086912 -0.01839472 0.99961298 3.12376273  
Axis -0.02620163 0.00869460 0.99961887  
Axis point 259.69234744 254.41235975 0.00000000  
Rotation angle (degrees) 60.51579296  
Shift along axis -6.97829165  
  

> fitmap #3 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
106876 points  
correlation = 0.6894, correlation about mean = 0.1692, overlap = 15.6  
steps = 100, shift = 2.95, angle = 8.14 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#3) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
0.48211899 0.87594267 -0.01690298 -91.20553915  
-0.87604227 0.48222657 0.00273417 355.81985761  
0.01054605 0.01348953 0.99985340 -9.55177852  
Axis 0.00613809 -0.01566517 -0.99985845  
Axis point 255.42058509 255.15822834 0.00000000  
Rotation angle (degrees) 61.17738760  
Shift along axis 3.41662022  
  

> fitmap #4 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
97455 points  
correlation = 0.6927, correlation about mean = 0.1686, overlap = 14.85  
steps = 140, shift = 7.33, angle = 12.2 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#4) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.51609519 0.85646045 -0.01101114 169.11440174  
-0.85646922 -0.51586049 0.01866615 606.37820852  
0.01030661 0.01906421 0.99976514 -10.77163255  
Axis 0.00023237 -0.01244423 -0.99992254  
Axis point 255.87000995 255.48132080 0.00000000  
Rotation angle (degrees) 121.07069261  
Shift along axis 3.26418267  
  

> fitmap #5 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
128468 points  
correlation = 0.6242, correlation about mean = 0.1588, overlap = 14.59  
steps = 140, shift = 4.12, angle = 17.6 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#5) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.49762408 -0.86664057 -0.03611655 612.10984550  
0.86706654 -0.49814743 0.00668900 161.24223041  
-0.02378833 -0.02798684 0.99932520 1.14773007  
Axis -0.01999648 -0.00710930 0.99977477  
Axis point 259.42417518 257.71378388 0.00000000  
Rotation angle (degrees) 119.88251440  
Shift along axis -12.23888920  
  

> fitmap #6 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
75598 points  
correlation = 0.8447, correlation about mean = 0.3072, overlap = 21.83  
steps = 80, shift = 0.597, angle = 0.967 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#6) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99990361 0.01080196 0.00872314 -4.12431856  
-0.01088505 0.99989530 0.00953455 0.27121332  
-0.00861924 -0.00962859 0.99991650 3.70282168  
Axis -0.56798440 0.51401801 -0.64279017  
Axis point 16.48546018 376.60543734 0.00000000  
Rotation angle (degrees) 0.96659277  
Shift along axis 0.10181975  
  

> fitmap #7 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
93952 points  
correlation = 0.656, correlation about mean = 0.159, overlap = 13.2  
steps = 272, shift = 5.78, angle = 32.1 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#7) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99969411 -0.00042799 -0.02472840 516.38975164  
0.00108652 -0.99964495 -0.02662319 516.92138057  
-0.02470823 -0.02664192 0.99933964 0.98445741  
Axis -0.01236125 -0.01331845 0.99983490  
Axis point 258.10309961 258.56501042 0.00000000  
Rotation angle (degrees) 179.95660527  
Shift along axis -12.28351843  
  

> fitmap #8 inMap #1

No atoms or maps for #8  

> select clear

> ~select #2

Nothing selected  

> select #2

2 models selected  

> ui mousemode right "translate selected models"

> fitmap #2 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
64020 points  
correlation = 0.851, correlation about mean = 0.277, overlap = 20.18  
steps = 108, shift = 1.04, angle = 1.4 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#2) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
0.50903030 -0.86073913 -0.00403693 347.99478402  
0.86070614 0.50895301 0.01231975 -97.20300823  
-0.00854948 -0.00974574 0.99991596 3.73296443  
Axis -0.01281690 0.00262114 0.99991442  
Axis point 259.22330364 256.42078575 0.00000000  
Rotation angle (degrees) 59.40610943  
Shift along axis -0.98235338  
  

> ~select #5

2 models selected  

> select #5

2 models selected  

> fitmap #5 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
128468 points  
correlation = 0.8269, correlation about mean = 0.4329, overlap = 24.96  
steps = 140, shift = 2.91, angle = 1.41 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#5) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.49072854 -0.87120806 -0.01349115 608.45610466  
0.87127350 -0.49079427 0.00186482 159.04692896  
-0.00824603 -0.01083936 0.99990725 3.92291728  
Axis -0.00729063 -0.00301005 0.99996889  
Axis point 257.76614317 257.33178580 0.00000000  
Rotation angle (degrees) 119.39368833  
Shift along axis -0.99197159  
  

> ~select #7

2 models selected  

> select #7

2 models selected  

> fitmap #7 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
93952 points  
correlation = 0.6965, correlation about mean = 0.1659, overlap = 15.25  
steps = 60, shift = 2.95, angle = 0.747 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#7) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99971800 0.00951111 -0.02175926 513.60338498  
-0.00909916 -0.99977897 -0.01895317 517.18927871  
-0.02193471 -0.01874984 0.99958357 3.42337915  
Axis 0.01092486 0.00942694 -0.99989588  
Axis point 258.02364520 257.41589459 0.00000000  
Rotation angle (degrees) 179.46679179  
Shift along axis 7.06353711  
  

> fitmap #7 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
93952 points  
correlation = 0.8379, correlation about mean = 0.3579, overlap = 23.37  
steps = 104, shift = 0.997, angle = 1.46 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#7) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.99990369 -0.01072018 -0.00881348 516.74588056  
0.01080896 -0.99989069 -0.01008778 512.48360042  
-0.00870437 -0.01018207 0.99991027 3.85990485  
Axis -0.00437969 -0.00506772 0.99997757  
Axis point 257.00213860 257.64230846 0.00000000  
Rotation angle (degrees) 179.38320988  
Shift along axis -1.00049298  
  

> ~select #4

2 models selected  

> select #4

2 models selected  

> fitmap #4 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
97455 points  
correlation = 0.8384, correlation about mean = 0.3728, overlap = 23.23  
steps = 140, shift = 1.32, angle = 2.05 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#4) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
-0.50897000 0.86077198 0.00459799 164.51581546  
-0.86074407 -0.50888737 -0.01238074 609.84881884  
-0.00831714 -0.01025912 0.99991278 3.79296692  
Axis 0.00123238 0.00750196 -0.99997110  
Axis point 256.20520319 258.01416779 0.00000000  
Rotation angle (degrees) 120.59539910  
Shift along axis 0.98495231  
  

> ~select #3

2 models selected  

> select #3

2 models selected  

> fitmap #3 inMap #1

Fit map tailspike-3.9hp-zflip.mrc in map tail-withspike-hp3.7-zflip.mrc using
106876 points  
correlation = 0.8366, correlation about mean = 0.3931, overlap = 24.05  
steps = 136, shift = 1.01, angle = 1.87 degrees  
  
Position of tailspike-3.9hp-zflip.mrc (#3) relative to tail-withspike-
hp3.7-zflip.mrc (#1) coordinates:  
Matrix rotation and translation  
0.49066375 0.87123883 0.01385628 -95.87560913  
-0.87130838 0.49073239 -0.00185294 353.60416596  
-0.00841408 -0.01116393 0.99990228 4.03837256  
Axis -0.00534281 0.01277912 -0.99990407  
Axis point 254.52863746 258.83943600 0.00000000  
Rotation angle (degrees) 60.61673899  
Shift along axis 0.99301082  
  

> save /Users/chunyanwang/Desktop/P22/Figure1-20211101.cxs

> open /Users/chunyanwang/Desktop/P22/gp10-gp5-c1/capsid-tail-c1-3.7-zflip-
> gp5-c5.mrc

Opened capsid-tail-c1-3.7-zflip-gp5-c5.mrc, grid size 480,480,480, pixel 1.07,
shown at level 0.00294, step 2, values float32  

> volume #8 step 1

> volume #8 level 0.002941

> volume #8 level 0.005532

> lighting soft

> lighting soft

> set bgColor white

> hide #!1 models

> set bgColor white

> save /Users/chunyanwang/Desktop/P22/Figure1-20211101.cxs

opened ChimeraX session  

[had to delete a bunch of stuff (it was a very long log)]

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  

Window position QRect(1548,836 100x30) outside any known screen, using primary
screen  

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/log/tool.py", line 363, in _actually_show  
lw.setHtml(html)  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
OSError: [Errno 28] No space left on device:
'/var/folders/tf/0d25cvld1xd6wwz23fx3gf240000gn/T/chbp8z3bgkko.html'  
  
File
"/Applications/ChimeraX-1.1.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py", line 243, in setHtml  
tf = open(self._tf_name, "wb")  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-12.10.12
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Intel Core i5
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      Boot ROM Version: 1554.60.15.0.0 (iBridge: 18.16.13030.0.0,0)

Software:

    System Software Overview:

      System Version: macOS 10.14.6 (18G103)
      Kernel Version: Darwin 18.7.0
      Time since boot: 6 days 8:37

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal: Supported, feature set macOS GPUFamily2 v1
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 2560 x 1600 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: No

PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.0
    Babel: 2.8.0
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2020.6.20
    chardet: 3.0.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.1
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.6.1
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 1.0.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.0
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.0
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.1
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.0
    ChimeraX-Clipper: 0.15.0
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-CommandLine: 1.1.3
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.1.1
    ChimeraX-CoreFormats: 1.0
    ChimeraX-coulombic: 1.0.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-DataFormats: 1.0
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.0
    ChimeraX-Hbonds: 2.0
    ChimeraX-Help: 1.0
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.0
    ChimeraX-ImageFormats: 1.0
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0
    ChimeraX-ISOLDE: 1.1.0
    ChimeraX-Label: 1.0
    ChimeraX-ListInfo: 1.0
    ChimeraX-Log: 1.1.1
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Map: 1.0.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.0
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 1.1
    ChimeraX-MDcrds: 2.0
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.0
    ChimeraX-mmCIF: 2.2
    ChimeraX-MMTF: 2.0
    ChimeraX-Modeller: 1.0
    ChimeraX-ModelPanel: 1.0
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.0
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0
    ChimeraX-OpenCommand: 1.2.1
    ChimeraX-PDB: 2.1
    ChimeraX-PDBBio: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0
    ChimeraX-PubChem: 2.0
    ChimeraX-Read-Pbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.0
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.2
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SeqView: 2.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.0
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.0
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.0.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.0
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.0
    ChimeraX-ToolshedUtils: 1.0
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.2.3
    ChimeraX-uniprot: 2.0
    ChimeraX-ViewDockX: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.3
    comtypes: 1.1.7
    cxservices: 1.0
    cycler: 0.10.0
    Cython: 0.29.20
    decorator: 4.4.2
    distlib: 0.3.1
    docutils: 0.16
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 2.10.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.16
    imagecodecs: 2020.5.30
    imagecodecs-lite: 2020.1.31
    imagesize: 1.2.0
    ipykernel: 5.3.0
    ipython: 7.15.0
    ipython-genutils: 0.2.0
    jedi: 0.17.2
    Jinja2: 2.11.2
    jupyter-client: 6.1.3
    jupyter-core: 4.6.3
    kiwisolver: 1.2.0
    line-profiler: 2.1.2
    lxml: 4.5.1
    MarkupSafe: 1.1.1
    matplotlib: 3.2.1
    MolecularDynamicsViewer: 1.1
    msgpack: 1.0.0
    netifaces: 0.10.9
    networkx: 2.4
    numexpr: 2.7.1
    numpy: 1.18.5
    numpydoc: 1.0.0
    openvr: 1.12.501
    packaging: 20.4
    parso: 0.7.1
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 7.1.2
    pip: 20.2.2
    pkginfo: 1.5.0.1
    prompt-toolkit: 3.0.7
    psutil: 5.7.0
    ptyprocess: 0.6.0
    pycollada: 0.7.1
    pydicom: 2.0.0
    Pygments: 2.6.1
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.12.3
    PyQt5-sip: 4.19.19
    PyQtWebEngine-commercial: 5.12.1
    python-dateutil: 2.8.1
    pytz: 2020.1
    pyzmq: 19.0.2
    qtconsole: 4.7.4
    QtPy: 1.9.0
    RandomWords: 0.3.0
    requests: 2.24.0
    scipy: 1.4.1
    Send2Trash: 1.8.0
    SEQCROW: 0.25.2
    setuptools: 49.4.0
    sfftk-rw: 0.6.6.dev0
    six: 1.15.0
    snowballstemmer: 2.0.0
    sortedcontainers: 2.2.2
    Sphinx: 3.1.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 1.0.3
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.4
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2020.6.3
    tinyarray: 1.2.2
    tornado: 6.0.4
    traitlets: 5.0.4
    urllib3: 1.25.10
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.34.2