![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6358 closed defect (nonchimerax)
Graphics crash, macOS 11.6.4, Intel Iris Plus Graphics 655, dual display
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4.dev202112082248 (2021-12-08 22:48:38 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Thread 0x00007000190bf000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000180bc000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000170b9000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 416 in select
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000160b6000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000150b3000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000140b0000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000130ad000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000120aa000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000110a7000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000100a4000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x000070000f0a1000 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000115bebe00 (most recent call first):
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 235 in swap_buffers
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 496 in swap_buffers
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 179 in draw
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 276 in render
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/sideview/tool.py", line 112 in _redraw
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 89 in draw_new_frame
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 316 in event_loop
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [1867]
Path: /Applications/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [1867]
User ID: 501
Date/Time: 2022-03-11 09:39:43.283 +0000
OS Version: macOS 11.6.4 (20G417)
Report Version: 12
Bridge OS Version: 6.2 (19P744)
Anonymous UUID: 3494F7F9-AB5D-108C-F42F-4E1C8A0969CD
Sleep/Wake UUID: E1822F11-5B0F-4D13-84BC-E5D96A0F0F24
Time Awake Since Boot: 680000 seconds
Time Since Wake: 6000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff208b592e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff208e45bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff207c8bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20929d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20839406 abort + 125
6 libGPUSupportMercury.dylib 0x00007fff4682f096 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff4682621c gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5ff6bc89 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff4682772d gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5f1fcd4a IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5f1fcb5e intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff5f20357b glrWriteBufferData + 1369
13 GLEngine 0x00007fff6c04113f glBufferSubData_Exec + 608
14 libffi.dylib 0x00007fff2dec58f5 ffi_call_unix64 + 85
15 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
16 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
17 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
18 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
19 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
20 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
21 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
22 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
23 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
24 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
25 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
26 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
27 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
28 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
29 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
30 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
31 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
32 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
33 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
34 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
35 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
36 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
37 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
38 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
39 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
40 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
41 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
42 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
43 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
44 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
45 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
46 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
47 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
48 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
49 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
50 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
51 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
52 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
53 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
54 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
55 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
56 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
57 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
58 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
59 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
60 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
61 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
62 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
63 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
64 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
65 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
66 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
67 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
68 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
69 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
70 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
71 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
72 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
73 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
74 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
75 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
76 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
77 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
78 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
79 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
80 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
81 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
82 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
83 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
84 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
85 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
86 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
87 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
88 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
89 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
90 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
91 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
92 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
93 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
94 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
95 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
96 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
97 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
98 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
99 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
100 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
101 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
102 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
103 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
104 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
105 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
106 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
107 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
108 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
109 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
110 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
111 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
112 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
113 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
114 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
115 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
116 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
117 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
118 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
119 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
120 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
121 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
122 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
123 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
124 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
125 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
126 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
127 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
128 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
129 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
130 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
131 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
132 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
133 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
134 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
135 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
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428 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
429 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
430 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
431 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
432 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
433 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
434 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
435 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
436 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
437 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
438 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
439 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
440 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
441 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
442 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
443 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
444 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
445 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
446 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
447 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
448 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
449 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
450 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
451 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
452 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
453 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
454 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
455 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
456 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
457 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
458 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
459 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
460 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
461 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
462 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
463 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
464 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
465 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
466 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
467 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
468 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
469 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
470 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
471 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
472 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
473 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
474 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
475 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
476 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
477 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
478 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
479 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
480 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
481 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
482 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
483 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
484 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
485 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
486 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
487 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
488 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
489 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
490 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
491 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
492 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
493 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
494 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
495 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
496 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
497 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
498 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
499 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
500 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
501 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
502 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
503 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
504 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
505 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
506 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
507 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
508 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
509 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
510 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
511 libffi.dylib 0x00007fff2dec522d ffi_call_int + 699
Thread 1:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010c597a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010c597a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010c597a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff208b81d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f7f7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011f7f7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011f78ba94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f795778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011f796150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011f795c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff208b81d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f7f7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011f7f7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001236c4f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f7151db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000011f7e4e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x0000000120a9c5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f71520f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff208b81d2 kevent64 + 10
1 QtWebEngineCore 0x000000011f7f7e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011f7f7cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 11:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f71520f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f7151db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f7151db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 14:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f79576a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011f796150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011f795d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 15:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f7151db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f7151db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011f78062b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011f7447cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011f79fa7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 17:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff209dc55f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff209dac3f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff209da04c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff23368e3a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f7ed2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011f79576a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011f795e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011f795c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 19:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f795778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011f796150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011f795cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x00000001632572eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x00000001632572eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 22:
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x00000001632572eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 23:: JavaScriptCore bmalloc scavenger
0 libsystem_kernel.dylib 0x00007fff208b1cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff208e4e49 _pthread_cond_wait + 1298
2 libc++.1.dylib 0x00007fff2084dd72 std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 com.apple.JavaScriptCore 0x00007fff379d4934 void std::__1::condition_variable_any::wait >(std::__1::unique_lock&) + 84
4 com.apple.JavaScriptCore 0x00007fff379d93fb bmalloc::Scavenger::threadRunLoop() + 331
5 com.apple.JavaScriptCore 0x00007fff379d8f89 bmalloc::Scavenger::threadEntryPoint(bmalloc::Scavenger*) + 9
6 com.apple.JavaScriptCore 0x00007fff379dbb17 void* std::__1::__thread_proxy >, void (*)(bmalloc::Scavenger*), bmalloc::Scavenger*> >(void*) + 39
7 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 24:
0 libsystem_pthread.dylib 0x00007fff208e0420 start_wqthread + 0
Thread 25:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff208af2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff208af62c mach_msg + 60
2 QtWebEngineCore 0x000000011f7ed492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011f795778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011f795e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x000000011f795cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011f7e8e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff208e48fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff208e0443 thread_start + 15
Thread 26:
0 libsystem_pthread.dylib 0x00007fff208e0420 start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00007fff208e0420 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000115c48e00 rcx: 0x00007ff481f55a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007ff481f55a80 rsp: 0x00007ff481f55a58
r8: 0x00007ff481f55f48 r9: 0x15c5981ba7f2e3ab r10: 0x0000000115c48e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007ff4898fd518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff208b592e rfl: 0x0000000000000246 cr2: 0x000000010bb347b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
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0x7fff34dca000 - 0x7fff3509bfff com.apple.CalendarPersistence (8.0 - 1071.4.4) /System/Library/PrivateFrameworks/CalendarPersistence.framework/Versions/A/CalendarPersistence
0x7fff3509c000 - 0x7fff350c1fff com.apple.CalendarAgentLink (8.0 - 250) /System/Library/PrivateFrameworks/CalendarAgentLink.framework/Versions/A/CalendarAgentLink
0x7fff350c2000 - 0x7fff350ccfff com.apple.RTCReporting (11.85.2 - 11.85.2) /System/Library/PrivateFrameworks/RTCReporting.framework/Versions/A/RTCReporting
0x7fff350cd000 - 0x7fff35273fff com.apple.WebKitLegacy (16611 - 16611.3.10.1.6) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebKitLegacy.framework/Versions/A/WebKitLegacy
0x7fff35274000 - 0x7fff35276fff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff3528e000 - 0x7fff352a3fff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff352f9000 - 0x7fff35364fff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff3542a000 - 0x7fff3542dfff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff35477000 - 0x7fff3586bfff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff358a3000 - 0x7fff35d1bfff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff36017000 - 0x7fff3601efff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff36558000 - 0x7fff367ecfff libAWDSupportFramework.dylib (4205) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libAWDSupportFramework.dylib
0x7fff36860000 - 0x7fff36890fff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff36891000 - 0x7fff368b1fff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff368b2000 - 0x7fff368c5fff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff368c6000 - 0x7fff368e9fff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff368ea000 - 0x7fff368edfff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff368ee000 - 0x7fff368f1fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff368f2000 - 0x7fff368f5fff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff368f6000 - 0x7fff368fdfff com.apple.ImageCapture (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff368fe000 - 0x7fff37aeefff com.apple.JavaScriptCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37b5a000 - 0x7fff37c6cfff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37c6d000 - 0x7fff37d00fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37d01000 - 0x7fff37f4bfff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff382e7000 - 0x7fff38394fff com.apple.accounts.AccountsDaemon (113 - 113) /System/Library/PrivateFrameworks/AccountsDaemon.framework/Versions/A/AccountsDaemon
0x7fff38395000 - 0x7fff38397fff com.apple.OAuth (25 - 25) /System/Library/PrivateFrameworks/OAuth.framework/Versions/A/OAuth
0x7fff38947000 - 0x7fff38956fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff38957000 - 0x7fff38a7efff com.apple.QuickLookUIFramework (5.0 - 928.5) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38e51000 - 0x7fff38ed7fff com.apple.coredav (1.0.1 - 889) /System/Library/PrivateFrameworks/CoreDAV.framework/Versions/A/CoreDAV
0x7fff38ed8000 - 0x7fff38f2efff com.apple.ExchangeWebServices (8.0 - 814.100.1) /System/Library/PrivateFrameworks/ExchangeWebServices.framework/Versions/A/ExchangeWebServices
0x7fff38f2f000 - 0x7fff38f6ffff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff3906b000 - 0x7fff3906bfff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff39251000 - 0x7fff39289fff com.apple.contacts.ContactsAutocomplete (1.0 - 1152.4) /System/Library/PrivateFrameworks/ContactsAutocomplete.framework/Versions/A/ContactsAutocomplete
0x7fff3928a000 - 0x7fff39296fff com.apple.KerberosHelper (4.0 - 1.0) /System/Library/PrivateFrameworks/KerberosHelper.framework/Versions/A/KerberosHelper
0x7fff39297000 - 0x7fff392dafff com.apple.ResponseKit (1.0 - 165.2) /System/Library/PrivateFrameworks/ResponseKit.framework/Versions/A/ResponseKit
0x7fff392db000 - 0x7fff392fafff com.apple.proactive.support.ProactiveEventTracker (1.0 - 294.7) /System/Library/PrivateFrameworks/ProactiveEventTracker.framework/Versions/A/ProactiveEventTracker
0x7fff3971e000 - 0x7fff3971efff com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff3971f000 - 0x7fff39726fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff39727000 - 0x7fff39735fff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff39736000 - 0x7fff3974dfff libAccessibility.dylib (2885.49.1) /usr/lib/libAccessibility.dylib
0x7fff3974e000 - 0x7fff3be98fff com.apple.WebCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
0x7fff3bfdc000 - 0x7fff3c183fff libFosl_dynamic.dylib (200) /usr/lib/libFosl_dynamic.dylib
0x7fff3c184000 - 0x7fff3c1a6fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3c1a7000 - 0x7fff3c23efff com.apple.AirPlaySync (1.0 - 2780.10.4.1) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c472000 - 0x7fff3c4c0fff com.apple.Safari.SafeBrowsing (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariSafeBrowsing.framework/Versions/A/SafariSafeBrowsing
0x7fff3c4c1000 - 0x7fff3cca0fff com.apple.WebKit (16611 - 16611.3.10.1.6) /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
0x7fff3cdcf000 - 0x7fff3ce52fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3ce53000 - 0x7fff3ce56fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3ce57000 - 0x7fff3ce5afff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cf53000 - 0x7fff3cf53fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3d10d000 - 0x7fff3d12cfff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d279000 - 0x7fff3d2cffff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3d2d0000 - 0x7fff3d2edfff com.apple.sidecar-core (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d2ee000 - 0x7fff3d2f1fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d2f2000 - 0x7fff3d325fff com.apple.datadetectors (5.0 - 423) /System/Library/PrivateFrameworks/DataDetectors.framework/Versions/A/DataDetectors
0x7fff3d704000 - 0x7fff3d708fff com.apple.CoreOptimization (1.0 - 1) /System/Library/PrivateFrameworks/CoreOptimization.framework/Versions/A/CoreOptimization
0x7fff3d709000 - 0x7fff3d70ffff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d83e000 - 0x7fff3d87ffff com.apple.NaturalLanguage (1.0 - 84) /System/Library/Frameworks/NaturalLanguage.framework/Versions/A/NaturalLanguage
0x7fff3d880000 - 0x7fff3d897fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3da4a000 - 0x7fff3da55fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3da6a000 - 0x7fff3da7cfff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3da7d000 - 0x7fff3da80fff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3da99000 - 0x7fff3dc08fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3dc09000 - 0x7fff3de64fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3de65000 - 0x7fff3df7bfff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3df7c000 - 0x7fff3df8dfff com.apple.sidecar-ui (1.0 - 231.0.1) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3df99000 - 0x7fff3df9cfff com.apple.WebInspectorUI (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/WebInspectorUI.framework/Versions/A/WebInspectorUI
0x7fff3e5b0000 - 0x7fff3e612fff com.apple.ImageCaptureCore (1711.5.2.1 - 1711.5.2.1) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e613000 - 0x7fff3e638fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e884000 - 0x7fff3e9e6fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e9e7000 - 0x7fff3ecc8fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3ecf4000 - 0x7fff3ee20fff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ee21000 - 0x7fff3f2c1fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f2c2000 - 0x7fff3f3aafff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff400f1000 - 0x7fff4016efff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff40eb2000 - 0x7fff40ebdfff com.apple.CaptiveNetworkSupport (13.0 - 1) /System/Library/PrivateFrameworks/CaptiveNetwork.framework/Versions/A/CaptiveNetwork
0x7fff4125d000 - 0x7fff41274fff com.apple.LookupFramework (1.2 - 284.1) /System/Library/PrivateFrameworks/Lookup.framework/Versions/A/Lookup
0x7fff41275000 - 0x7fff412a4fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff41309000 - 0x7fff4130cfff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff41731000 - 0x7fff4174ffff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43cde000 - 0x7fff43f51fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff447ba000 - 0x7fff447befff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff46135000 - 0x7fff46138fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff46824000 - 0x7fff4682ffff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47e5a000 - 0x7fff47e9bfff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff486e9000 - 0x7fff48704fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff518e2000 - 0x7fff5190ffff com.apple.HelpData (2.3 - 201.1) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff51910000 - 0x7fff5192afff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff5192b000 - 0x7fff519cafff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51bba000 - 0x7fff51bbdfff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff54252000 - 0x7fff54288fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff5587f000 - 0x7fff55882fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5dfba000 - 0x7fff5e449fff com.apple.driver.AppleIntelKBLGraphicsMTLDriver (16.5.8 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsMTLDriver
0x7fff5f1e2000 - 0x7fff601c9fff com.apple.driver.AppleIntelKBLGraphicsGLDriver (16.5.8 - 16.0.5) /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver
0x7fff6997b000 - 0x7fff6997ffff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bdc6000 - 0x7fff6bdccfff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bdcd000 - 0x7fff6bdd1fff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bdd2000 - 0x7fff6bde1fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bde2000 - 0x7fff6bde4fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bde5000 - 0x7fff6bdedfff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bdee000 - 0x7fff6be21fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6be22000 - 0x7fff6be5efff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6be5f000 - 0x7fff6bff2fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bff3000 - 0x7fff6bffdfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bffe000 - 0x7fff6c17bfff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c17c000 - 0x7fff6c1a4fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d43d000 - 0x7fff6d495fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e53f000 - 0x7fff6e546fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e547000 - 0x7fff6e62efff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f7c2000 - 0x7fff6f7ccfff com.apple.AccessibilityBundles (1.0 - 174) /System/Library/PrivateFrameworks/AccessibilityBundles.framework/Versions/A/AccessibilityBundles
0x7fff6fbb0000 - 0x7fff6fbc2fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73ec5000 - 0x7fff73ed0fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff740e6000 - 0x7fff740fefff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a0e000 - 0x7fff77a15fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.3G resident=0K(0%) swapped_out_or_unallocated=1.3G(100%)
Writable regions: Total=5.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 896K 7
Activity Tracing 256K 1
CG backing stores 4320K 12
CG image 3692K 46
CoreAnimation 4196K 110
CoreGraphics 20K 4
CoreUI image data 5268K 51
Foundation 40K 2
JS JIT generated code 1.0G 3
Kernel Alloc Once 8K 1
MALLOC 3.5G 1728
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 5
STACK GUARD 108K 27
Stack 141.7M 28
Stack Guard 56.0M 1
VM_ALLOCATE 438.4M 242
VM_ALLOCATE (reserved) 128.0M 3 reserved VM address space (unallocated)
WebKit Malloc 1128K 5
__DATA 34.6M 730
__DATA_CONST 31.6M 323
__DATA_DIRTY 1813K 223
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 601.8M 207
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 747.7M 689
__UNICODE 588K 1
mapped file 584.6M 58
shared memory 2992K 29
=========== ======= =======
TOTAL 7.3G 4553
TOTAL, minus reserved VM space 7.2G 4553
===== Log before crash start =====
> ui tool show "Side View"
> lighting soft
> alias openrefine open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_class001.mrc
> name $1map; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_class001_angdist.bild
> name $1angdist; volume step 1; select ##name=$1map ; color sel #b2b2b2;
> ~sel; lighting soft
> alias initialise hide atoms;show cartoon;cartoon style thick 1 modeh tube
> sides 24 radius 1.7;cartoon style strand xsection barbell barscale 1
> arrowscale 2.2;select nucleic;show sel atoms;~sel;nucleotides stubs;cartoon
> style thick 1;cartoon style nucleic xsect oval width 2 thick 1;show
> surface;color /a #b0bec5;color /b #546e7a;color /c #f8bbd0;color /d
> #b3e5fc;color /e #cfd8dc;color /m:1-56 #00ACC1;color /m:57-84 #ae2a00;color
> /m:85-104 #ffeb3b;color /m:105-119 #FFF9C4;color /m:120-255 #1caf50;color
> /m:256-405 #ef6c00;color /m:406-477 #d32f2f;color /t #ffeb3b;color /n
> #ec407a;color /f,h,j #8bc34a;color /g,i,k #ff9800;color /r #D500F9;hide
> surface; lighting soft
> alias openrpc open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpc.pdb; initialise
> alias openrpe open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpe.pdb; initialise
> alias openrpi open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpi.pdb; initialise
> alias openrpinew open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/RPi_composite_model_renumber_2.pdb;
> initialise
> alias openrpo open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpo.pdb; initialise
> alias openrpip open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpip.pdb; initialise
> alias openrpitc open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpitc.pdb; initialise
> alias openrpim8m11 open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpim8m11_from_rpc_ring_aligned-
> coot-5.pdb; initialise
> alias openexpressome open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/expressome.pdb;
> initialise
> alias open3d2 open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class001.mrc
> name $1_c1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class002.mrc
> name $1_c2; select ##name=$1_c1 ; color sel #e57373; ~sel; select
> ##name=$1_c2 ; color sel #fff176; ~sel; volume step 1
> alias open3d3 open3d2 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class003.mrc
> name $1_c3; select ##name=$1_c3 ; color sel #81c784; ~sel; volume step 1
> alias open3d4 open3d3 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c4; select ##name=$1_c4 ; color sel #64b5f6; ~sel; volume step 1
> alias open3d5 open3d4 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c5; select ##name=$1_c5 ; color sel #ba68c8; ~sel; volume step 1
> alias open3d6 open3d5 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c6; select ##name=$1_c6 ; color sel #F06292; ~sel; volume step 1
> alias save3dim show all; windowsize 864 626;view 1;tile columns
> $1;windowsize 864 626;save $2/image1.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image2.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image3.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image4.png supersample 6 transparentBackground
> true width 3456 height 2504;view 1;turn x 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image5.png supersample 6 transparentBackground
> true width 3456 height 2504;turn x 180;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image6.png supersample 6 transparentBackground
> true width 3456 height 2504; view 1;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$2/"
> alias save3drefim show all; view; windowsize 864 626; view 1; hide #2; save
> $1/image1.png supersample 6 transparentBackground true width 900 height
> 1280; show #2; save $1/image1a.png supersample 6 transparentBackground true
> width 900 height 1280; turn y 90; hide #2; save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image2a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; hide #2; save $1/image3.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image3a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; hide #2; save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image4a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; view 1; turn x 90; hide #2; save $1/image5.png supersample
> 6 transparentBackground true width 900 height 1280; show #2; save
> $1/image5a.png supersample 6 transparentBackground true width 900 height
> 1280; turn x 180; hide #2; save $1/image6.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image6a.png supersample 6 transparentBackground true width 900 height
> 1280; view 1; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless
> --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process_refine.ijm "$1/"
> alias save3dmim6 show all; windowsize 864 626;select #1,7;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,7;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,7;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,7;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;select #5,7;hide
> ~sel;~sel;save $1/image5.png supersample 6 transparentBackground true width
> 900 height 1280;select #6,7;hide ~sel;~sel;save $1/image6.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim5 show all; windowsize 864 626;select #1,6;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,6;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,6;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,6;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;select #5,6;hide
> ~sel;~sel;save $1/image5.png supersample 6 transparentBackground true width
> 900 height 1280; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
> --headless --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim4 show all; windowsize 864 626;select #1,5;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,5;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,5;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,5;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim3 show all; windowsize 864 626;select #1,4;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,4;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,4;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
> --headless --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim2 show all; windowsize 864 626;select #1,3;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,3;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias openmulti open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component001_bin*.mrc
> vseries true ; select ##name=analyse_component001_bin001.mrc ; color sel
> #F44336; rename ##name=analyse_component001_bin001.mrc $1_c1 ; ~sel; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component002_bin*.mrc
> vseries true ; select ##name=analyse_component002_bin001.mrc ; color sel
> #8BC34A; rename ##name=analyse_component002_bin001.mrc $1_c2 ; ~sel; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component003_bin*.mrc
> vseries true ; select ##name=analyse_component003_bin001.mrc ; color sel
> #1E88E5; rename ##name=analyse_component003_bin001.mrc $1_c3 ; ~sel; volume
> step 1; vseries slider ##name=$1_c1 ; vseries slider ##name=$1_c2 ; vseries
> slider ##name=$1_c3
> alias localres close; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/relion_locres_filtered.mrc;
> open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/relion_locres.mrc;
> hide #2 target m; color sample #1.1 map #2 palette #0000ff:#ffffff:#ff0000;
> view 1; lighting soft; volume #1 step 1
> alias localresim windowsize 864 626;view 1;windowsize 864 626;save
> $2/image1.png supersample 6 transparentBackground true width 3456 height
> 2504;turn y 90;view;zoom 1.1;windowsize 864 626;save $2/image2.png
> supersample 6 transparentBackground true width 3456 height 2504;turn y
> 90;view;zoom 1.1;windowsize 864 626;save $2/image3.png supersample 6
> transparentBackground true width 3456 height 2504;turn y 90;view;zoom
> 1.1;windowsize 864 626;save $2/image4.png supersample 6
> transparentBackground true width 3456 height 2504;view 1;turn x 90;view;zoom
> 1.1;windowsize 864 626;save $2/image5.png supersample 6
> transparentBackground true width 3456 height 2504;turn x 180;view;zoom
> 1.1;windowsize 864 626;save $2/image6.png supersample 6
> transparentBackground true width 3456 height 2504; view 1;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$2/"
> alias colmaps2 color #1 #e57373; color #2 #fff176;
> alias colmaps3 color #1 #e57373; color #2 #fff176; color #3 #81c784;
> alias colmaps4 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6;
> alias colmaps5 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6; color #5 #ba68c8
> alias colmaps6 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6; color #5 #ba68c8; color #6 #F06292;
UCSF ChimeraX version: 1.4.dev202112082248 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/WT_RPc1-coot-3_aligned.pdb
Summary of feedback from opening /Users/forsongao/Documents/GitHub/Milestone-
assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/WT_RPc1-coot-3_aligned.pdb
---
warnings | Ignored bad PDB record found on line 504
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 505
MOLPROBITY STATISTICS.
Chain information for WT_RPc1-coot-3_aligned.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
M | No description available
N | No description available
T | No description available
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/wtRPc_com2-coot-0.pdb
Summary of feedback from opening /Users/forsongao/Documents/GitHub/Milestone-
assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/wtRPc_com2-coot-0.pdb
---
warnings | Ignored bad PDB record found on line 20
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 21
BOND : 0.004 0.068 29500
Ignored bad PDB record found on line 22
ANGLE : 0.871 15.149 40342
Ignored bad PDB record found on line 23
CHIRALITY : 0.053 0.353 4761
Ignored bad PDB record found on line 24
PLANARITY : 0.006 0.080 5046
15 messages similar to the above omitted
End residue of secondary structure not found: HELIX 105 105 GLN M 121 MET M
130 1 10
End residue of secondary structure not found: HELIX 115 115 GLN M 301 ASN M
309 1 9
Chain information for wtRPc_com2-coot-0.pdb #2
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
M | No description available
N | No description available
T | No description available
> mmaker #2/d to #1/d
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker WT_RPc1-coot-3_aligned.pdb, chain D (#1) with
wtRPc_com2-coot-0.pdb, chain D (#2), sequence alignment score = 6155.1
RMSD between 1226 pruned atom pairs is 0.877 angstroms; (across all 1333
pairs: 1.160)
> initialise
2952 atoms, 3308 bonds, 144 residues, 2 models selected
Nothing selected
> style stick
Changed 57930 atom styles
> style stick
Changed 57930 atom styles
> style stick
Changed 57930 atom styles
> hide #!2 models
> hide #!1 models
> show #!2 models
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/WT_RPc1.mrc
Opened WT_RPc1.mrc as #3, grid size 256,256,256, pixel 1.1, shown at level
0.0283, step 1, values float32
> molmap #1 3
Opened WT_RPc1-coot-3_aligned.pdb map 3 as #4, grid size 153,186,177, pixel 1,
shown at level 0.109, step 1, values float32
> fitmap #3 inMap #4
Fit map WT_RPc1.mrc in map WT_RPc1-coot-3_aligned.pdb map 3 using 167572
points
correlation = 0.8265, correlation about mean = 0.4305, overlap = 6055
steps = 84, shift = 9.34, angle = 4.25 degrees
Position of WT_RPc1.mrc (#3) relative to WT_RPc1-coot-3_aligned.pdb map 3 (#4)
coordinates:
Matrix rotation and translation
0.99933486 -0.00675033 0.03583671 -11.64921310
0.00904663 0.99788920 -0.06430636 3.81228723
-0.03532698 0.06458779 0.99728653 -6.71629493
Axis 0.87043928 0.48057783 0.10667901
Axis point 0.00000000 94.27564487 123.62973738
Rotation angle (degrees) 4.24604827
Shift along axis -9.02431955
> close #4
> molmap #1 3
Opened WT_RPc1-coot-3_aligned.pdb map 3 as #4, grid size 153,186,177, pixel 1,
shown at level 0.109, step 1, values float32
> fitmap #3 inMap #4
Fit map WT_RPc1.mrc in map WT_RPc1-coot-3_aligned.pdb map 3 using 167572
points
correlation = 0.8265, correlation about mean = 0.4306, overlap = 6055
steps = 28, shift = 0.0105, angle = 0.00263 degrees
Position of WT_RPc1.mrc (#3) relative to WT_RPc1-coot-3_aligned.pdb map 3 (#4)
coordinates:
Matrix rotation and translation
0.99933607 -0.00671308 0.03581007 -11.65348806
0.00900780 0.99788939 -0.06430889 3.80975315
-0.03530278 0.06458876 0.99728732 -6.71436657
Axis 0.87063624 0.48033010 0.10618630
Axis point 0.00000000 94.30213796 123.58494768
Rotation angle (degrees) 4.24520155
Shift along axis -9.02898371
> close #4
> show #!1 models
> hide #!2 models
> nucleotides #!1 atoms
> style nucleic & #!1 stick
Changed 1476 atom styles
> volume #3 level 0.03013
> volume #3 level 0.02453
> color #3 #b2b2b281 models
> show #!2 models
> hide #!3 models
> nucleotides atoms
> style nucleic stick
Changed 2952 atom styles
> hide #!1 models
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/wtRPccom2.mrc
Opened wtRPccom2.mrc as #4, grid size 256,256,256, pixel 1.1, shown at level
0.026, step 1, values float32
> molmap #2 3
Opened wtRPc_com2-coot-0.pdb map 3 as #5, grid size 175,184,168, pixel 1,
shown at level 0.109, step 1, values float32
> fitmap #4 inMap #5
Fit map wtRPccom2.mrc in map wtRPc_com2-coot-0.pdb map 3 using 167562 points
correlation = 0.8409, correlation about mean = 0.4306, overlap = 4821
steps = 172, shift = 9.8, angle = 20.1 degrees
Position of wtRPccom2.mrc (#4) relative to wtRPc_com2-coot-0.pdb map 3 (#5)
coordinates:
Matrix rotation and translation
0.99999984 -0.00033653 0.00045429 -0.01996798
0.00033657 0.99999994 -0.00008147 -0.04882089
-0.00045427 0.00008162 0.99999989 0.06302998
Axis 0.14275603 0.79528886 0.58918278
Axis point 144.63094930 0.00000000 42.57779056
Rotation angle (degrees) 0.03272815
Shift along axis -0.00454108
> close #5
> molmap #2 3
Opened wtRPc_com2-coot-0.pdb map 3 as #5, grid size 175,184,168, pixel 1,
shown at level 0.109, step 1, values float32
> fitmap #4 inMap #5
Fit map wtRPccom2.mrc in map wtRPc_com2-coot-0.pdb map 3 using 167562 points
correlation = 0.8408, correlation about mean = 0.4306, overlap = 4821
steps = 60, shift = 0.00341, angle = 0.00692 degrees
Position of wtRPccom2.mrc (#4) relative to wtRPc_com2-coot-0.pdb map 3 (#5)
coordinates:
Matrix rotation and translation
0.99999989 -0.00022101 0.00041904 -0.03295930
0.00022104 0.99999997 -0.00008223 -0.03364150
-0.00041903 0.00008232 0.99999991 0.06039215
Axis 0.17110541 0.87145533 0.45966134
Axis point 152.00300258 0.00000000 75.75561512
Rotation angle (degrees) 0.02755042
Shift along axis -0.00719664
> close #5
> volume #4 color #ba68c87e
> volume #4 level 0.02055
> volume #4 level 0.02355
> show #!1 models
> hide #!1 models
> show #!4 models
> hide #!4 models
> hide #!2 models
> show #!1 models
> hide #!3 models
> show #!3 models
> show #!4 models
> hide #!3 models
> hide #!1 models
> show #!2 models
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #!1 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/WT_RPc1-coot-4.pdb
Summary of feedback from opening /Users/forsongao/Documents/GitHub/Milestone-
assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/WT_RPc1-coot-4.pdb
---
warnings | Ignored bad PDB record found on line 20
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 21
BOND : 0.004 0.059 29580
Ignored bad PDB record found on line 22
ANGLE : 0.851 16.757 40455
Ignored bad PDB record found on line 23
CHIRALITY : 0.053 0.297 4768
Ignored bad PDB record found on line 24
PLANARITY : 0.006 0.067 5059
15 messages similar to the above omitted
End residue of secondary structure not found: HELIX 105 105 GLN M 121 MET M
130 1 10
End residue of secondary structure not found: HELIX 115 115 GLN M 301 ASN M
309 1 9
Chain information for WT_RPc1-coot-4.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
M | No description available
N | No description available
T | No description available
> mmaker #5 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker WT_RPc1-coot-3_aligned.pdb, chain C (#1) with WT_RPc1-coot-4.pdb,
chain C (#5), sequence alignment score = 6711.4
RMSD between 1341 pruned atom pairs is 0.001 angstroms; (across all 1341
pairs: 0.001)
> initialise
4428 atoms, 4962 bonds, 216 residues, 3 models selected
Nothing selected
> volume #3 level 0.0208
> nucleotides #!1,5 atoms
> style nucleic & #!1,5 stick
Changed 2952 atom styles
> hide #!5 models
> select #1/M:15
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
15 atoms, 14 bonds, 2 residues, 2 models selected
> show sel atoms
> color sel byhetero
> show #!5 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> select #5/M:15
8 atoms, 7 bonds, 1 residue, 1 model selected
> show sel atoms
> style sel stick
Changed 8 atom styles
> color sel byhetero
> select clear
> hide #!3 models
> show #!3 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> sequence chain #1/M
Alignment identifier is 1/M
> open 5nss
5nss title:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and
transcription activator PspF intermedate complex [more info...]
Chain information for 5nss #6
---
Chain | Description | UniProt
A B | DNA-directed RNA polymerase subunit α | RPOA_ECOLI
C | DNA-directed RNA polymerase subunit β | RPOB_ECOLI
D | DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase
subunit beta',DNA-directed RNA polymerase subunit beta' | RPOC_ECOLI
E | DNA-directed RNA polymerase subunit ω | RPOZ_ECOLI
F G J K L N | Psp operon transcriptional activator | PSPF_ECOLI
H | Non-template promoter DNA |
I | Template promoter DNA |
M | RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor RpoN,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor | A0A0J4U551_KLEPN
> sequence chain #6/M
Alignment identifier is 6/M
> close #6
> open 5nss
5nss title:
Cryo-EM structure of RNA polymerase-sigma54 holoenzyme with promoter DNA and
transcription activator PspF intermedate complex [more info...]
Chain information for 5nss #6
---
Chain | Description | UniProt
A B | DNA-directed RNA polymerase subunit α | RPOA_ECOLI
C | DNA-directed RNA polymerase subunit β | RPOB_ECOLI
D | DNA-directed RNA polymerase subunit beta',DNA-directed RNA polymerase
subunit beta',DNA-directed RNA polymerase subunit beta' | RPOC_ECOLI
E | DNA-directed RNA polymerase subunit ω | RPOZ_ECOLI
F G J K L N | Psp operon transcriptional activator | PSPF_ECOLI
H | Non-template promoter DNA |
I | Template promoter DNA |
M | RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor RpoN,RNA polymerase sigma-54 factor,RNA polymerase
sigma-54 factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54
factor,RNA polymerase sigma-54 factor,RNA polymerase sigma-54 factor,RNA
polymerase sigma-54 factor,RNA polymerase sigma-54 factor | A0A0J4U551_KLEPN
> sequence chain #6/M
Alignment identifier is 6/M
> close #6
> open 5byh
5byh title:
Crystal Structure of Escherichia coli RNA polymerase - Sigma54 Holoenzyme
complex [more info...]
Chain information for 5byh #6
---
Chain | Description | UniProt
A B | DNA-directed RNA polymerase subunit α | RPOA_ECOLI
C | DNA-directed RNA polymerase subunit β | RPOB_ECOLI
D | DNA-directed RNA polymerase subunit beta' | RPOC_ECOLI
E | DNA-directed RNA polymerase subunit ω | RPOZ_ECOLI
M | RNA polymerase sigma-54 factor | A0A0A5M0N3_ECOLX
Non-standard residues in 5byh #6
---
ZN — zinc ion
> sequence chain #6/M
Alignment identifier is 6/M
> volume #3 level 0.03616
> volume #4 level 0.024
> volume #3 level 0.024
> hide #!6 models
> hide #!1 models
> volume #3 level 0.023
> volume #3 level 0.024
> volume #3 level 0.025
> show #!1 models
> hide #!1 models
> show #!1 models
> open /Users/forsongao/Documents/GitHub/Milestone-
> assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/18222WT_RPc1-coot-0.pdb
Summary of feedback from opening /Users/forsongao/Documents/GitHub/Milestone-
assessments/RPi_PspF_Paper_1/18_2_22_latest/10_3_22_latest_rpc1/18222WT_RPc1-coot-0.pdb
---
warnings | Ignored bad PDB record found on line 20
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 21
BOND : 0.004 0.059 29580
Ignored bad PDB record found on line 22
ANGLE : 0.851 16.757 40455
Ignored bad PDB record found on line 23
CHIRALITY : 0.053 0.297 4768
Ignored bad PDB record found on line 24
PLANARITY : 0.006 0.067 5059
15 messages similar to the above omitted
End residue of secondary structure not found: HELIX 105 105 GLN M 121 MET M
130 1 10
End residue of secondary structure not found: HELIX 115 115 GLN M 301 ASN M
309 1 9
Chain information for 18222WT_RPc1-coot-0.pdb #7
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
M | No description available
N | No description available
T | No description available
> mmaker #7 to #5
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker WT_RPc1-coot-4.pdb, chain C (#5) with 18222WT_RPc1-coot-0.pdb,
chain C (#7), sequence alignment score = 6711.4
RMSD between 1341 pruned atom pairs is 0.000 angstroms; (across all 1341
pairs: 0.000)
> delete #7/a,b,c,d,e,m
> select #76
Nothing selected
> select #7
1476 atoms, 1654 bonds, 72 residues, 1 model selected
===== Log before crash end =====
Log:
> ui tool show "Side View"
> lighting soft
> alias openrefine open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_class001.mrc
> name $1map; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_class001_angdist.bild
> name $1angdist; volume step 1; select ##name=$1map ; color sel #b2b2b2;
> ~sel; lighting soft
> alias initialise hide atoms;show cartoon;cartoon style thick 1 modeh tube
> sides 24 radius 1.7;cartoon style strand xsection barbell barscale 1
> arrowscale 2.2;select nucleic;show sel atoms;~sel;nucleotides stubs;cartoon
> style thick 1;cartoon style nucleic xsect oval width 2 thick 1;show
> surface;color /a #b0bec5;color /b #546e7a;color /c #f8bbd0;color /d
> #b3e5fc;color /e #cfd8dc;color /m:1-56 #00ACC1;color /m:57-84 #ae2a00;color
> /m:85-104 #ffeb3b;color /m:105-119 #FFF9C4;color /m:120-255 #1caf50;color
> /m:256-405 #ef6c00;color /m:406-477 #d32f2f;color /t #ffeb3b;color /n
> #ec407a;color /f,h,j #8bc34a;color /g,i,k #ff9800;color /r #D500F9;hide
> surface; lighting soft
> alias openrpc open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpc.pdb; initialise
> alias openrpe open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpe.pdb; initialise
> alias openrpi open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpi.pdb; initialise
> alias openrpinew open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/RPi_composite_model_renumber_2.pdb;
> initialise
> alias openrpo open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpo.pdb; initialise
> alias openrpip open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpip.pdb; initialise
> alias openrpitc open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpitc.pdb; initialise
> alias openrpim8m11 open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/rpim8m11_from_rpc_ring_aligned-
> coot-5.pdb; initialise
> alias openexpressome open
> /Users/forsongao/Documents/GitHub/Data/EM/Morphing/expressome.pdb;
> initialise
> alias open3d2 open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class001.mrc
> name $1_c1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class002.mrc
> name $1_c2; select ##name=$1_c1 ; color sel #e57373; ~sel; select
> ##name=$1_c2 ; color sel #fff176; ~sel; volume step 1
> alias open3d3 open3d2 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class003.mrc
> name $1_c3; select ##name=$1_c3 ; color sel #81c784; ~sel; volume step 1
> alias open3d4 open3d3 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c4; select ##name=$1_c4 ; color sel #64b5f6; ~sel; volume step 1
> alias open3d5 open3d4 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c5; select ##name=$1_c5 ; color sel #ba68c8; ~sel; volume step 1
> alias open3d6 open3d5 $1; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/run_it025_class004.mrc
> name $1_c6; select ##name=$1_c6 ; color sel #F06292; ~sel; volume step 1
> alias save3dim show all; windowsize 864 626;view 1;tile columns
> $1;windowsize 864 626;save $2/image1.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image2.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image3.png supersample 6 transparentBackground
> true width 3456 height 2504;turn y 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image4.png supersample 6 transparentBackground
> true width 3456 height 2504;view 1;turn x 90;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image5.png supersample 6 transparentBackground
> true width 3456 height 2504;turn x 180;view;zoom 1.1;tile columns
> $1;windowsize 864 626;save $2/image6.png supersample 6 transparentBackground
> true width 3456 height 2504; view 1;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$2/"
> alias save3drefim show all; view; windowsize 864 626; view 1; hide #2; save
> $1/image1.png supersample 6 transparentBackground true width 900 height
> 1280; show #2; save $1/image1a.png supersample 6 transparentBackground true
> width 900 height 1280; turn y 90; hide #2; save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image2a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; hide #2; save $1/image3.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image3a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; hide #2; save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image4a.png supersample 6 transparentBackground true width 900 height
> 1280; turn y 90; view 1; turn x 90; hide #2; save $1/image5.png supersample
> 6 transparentBackground true width 900 height 1280; show #2; save
> $1/image5a.png supersample 6 transparentBackground true width 900 height
> 1280; turn x 180; hide #2; save $1/image6.png supersample 6
> transparentBackground true width 900 height 1280; show #2; save
> $1/image6a.png supersample 6 transparentBackground true width 900 height
> 1280; view 1; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless
> --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process_refine.ijm "$1/"
> alias save3dmim6 show all; windowsize 864 626;select #1,7;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,7;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,7;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,7;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;select #5,7;hide
> ~sel;~sel;save $1/image5.png supersample 6 transparentBackground true width
> 900 height 1280;select #6,7;hide ~sel;~sel;save $1/image6.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim5 show all; windowsize 864 626;select #1,6;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,6;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,6;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,6;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;select #5,6;hide
> ~sel;~sel;save $1/image5.png supersample 6 transparentBackground true width
> 900 height 1280; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
> --headless --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim4 show all; windowsize 864 626;select #1,5;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,5;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,5;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280;select #4,5;hide ~sel;~sel;save $1/image4.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim3 show all; windowsize 864 626;select #1,4;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,4;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;select #3,4;hide
> ~sel;~sel;save $1/image3.png supersample 6 transparentBackground true width
> 900 height 1280; /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
> --headless --console -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias save3dmim2 show all; windowsize 864 626;select #1,3;hide
> ~sel;~sel;save $1/image1.png supersample 6 transparentBackground true width
> 900 height 1280;select #2,3;hide ~sel;~sel;save $1/image2.png supersample 6
> transparentBackground true width 900 height 1280;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$1/"
> alias openmulti open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component001_bin*.mrc
> vseries true ; select ##name=analyse_component001_bin001.mrc ; color sel
> #F44336; rename ##name=analyse_component001_bin001.mrc $1_c1 ; ~sel; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component002_bin*.mrc
> vseries true ; select ##name=analyse_component002_bin001.mrc ; color sel
> #8BC34A; rename ##name=analyse_component002_bin001.mrc $1_c2 ; ~sel; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/analyse_component003_bin*.mrc
> vseries true ; select ##name=analyse_component003_bin001.mrc ; color sel
> #1E88E5; rename ##name=analyse_component003_bin001.mrc $1_c3 ; ~sel; volume
> step 1; vseries slider ##name=$1_c1 ; vseries slider ##name=$1_c2 ; vseries
> slider ##name=$1_c3
> alias localres close; open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/relion_locres_filtered.mrc;
> open
> /Users/forsongao/Documents/GitHub/Data/EM/RP-1-10_2/job$1/relion_locres.mrc;
> hide #2 target m; color sample #1.1 map #2 palette #0000ff:#ffffff:#ff0000;
> view 1; lighting soft; volume #1 step 1
> alias localresim windowsize 864 626;view 1;windowsize 864 626;save
> $2/image1.png supersample 6 transparentBackground true width 3456 height
> 2504;turn y 90;view;zoom 1.1;windowsize 864 626;save $2/image2.png
> supersample 6 transparentBackground true width 3456 height 2504;turn y
> 90;view;zoom 1.1;windowsize 864 626;save $2/image3.png supersample 6
> transparentBackground true width 3456 height 2504;turn y 90;view;zoom
> 1.1;windowsize 864 626;save $2/image4.png supersample 6
> transparentBackground true width 3456 height 2504;view 1;turn x 90;view;zoom
> 1.1;windowsize 864 626;save $2/image5.png supersample 6
> transparentBackground true width 3456 height 2504;turn x 180;view;zoom
> 1.1;windowsize 864 626;save $2/image6.png supersample 6
> transparentBackground true width 3456 height 2504; view 1;
> /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx --headless --console
> -macro /Users/forsongao/Documents/GitHub/Protocols-and-
> Recipes/fiji_process.ijm "$2/"
> alias colmaps2 color #1 #e57373; color #2 #fff176;
> alias colmaps3 color #1 #e57373; color #2 #fff176; color #3 #81c784;
> alias colmaps4 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6;
> alias colmaps5 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6; color #5 #ba68c8
> alias colmaps6 color #1 #e57373; color #2 #fff176; color #3 #81c784; color
> #4 #64b5f6; color #5 #ba68c8; color #6 #F06292;
UCSF ChimeraX version: 1.4.dev202112082248 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.8
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 1715.81.2.0.0 (iBridge: 19.16.10744.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.6.4 (20G417)
Kernel Version: Darwin 20.6.0
Time since boot: 9 days 23:18
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
S24A31x:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: H4CR600174W
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Connection Type: DVI or HDMI
Adapter Firmware Version: 7.55
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31.5
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202112082248
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.1
ChimeraX-ModelPanel: 1.3.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.15.1
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.24
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 4 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Graphics hardware encountered an error and was reset → Graphics crash, macOS 11.6.4, Intel Iris Plus Graphics 655, dual display |
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Apple graphics driver crash.