Opened 4 years ago
Closed 4 years ago
#6344 closed defect (duplicate)
Various old errors
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 0.9 (2019-01-19)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 449, in
init_available_from_cache
abc.load_from_cache()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 64, in load_from_cache
b = _build_bundle(d)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\available.py", line 249, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
UCSF ChimeraX version: 0.9 (2019-01-19)
How to cite UCSF ChimeraX
> open "C:\\\Users\\\Bon DTE Lab\\\Google Drive\\\Grad School\\\MS2 Viral
Capsids\\\PDB Files\\\Qbeta Grey MS2 Purple Sequence alignemnt.cxs" format
session
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 530, in customEvent
func(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 300, in defer
cxcmd(session, topic)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 392, in cxcmd
run(session, cmd)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2612, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 41, in open
from_database=from_database, ignore_cache=ignore_cache, **kw))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 117, in open
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 62, in handle_unknown_kw
return f(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 598, in open
session, filenames, format=format, name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 461, in open_multiple_data
models, status = open_data(session, fspec, format=format, name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 416, in open_data
models, status = open_func(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 822, in open
session.restore(stream, path=path, resize_window=resize_window)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 523, in restore
version = serialize.pickle_deserialize(stream)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 119, in pickle_deserialize
return unpickler.load()
_pickle.UnpicklingError: invalid load key, '\x04'.
_pickle.UnpicklingError: invalid load key, '\x04'.
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 119, in pickle_deserialize
return unpickler.load()
See log for complete Python traceback.
Updating list of available bundles failed: 'list' object has no attribute
'split'
> open "C:\\\Users\\\Bon DTE Lab\\\Google Drive\\\Grad School\\\MS2 Viral
Capsids\\\PDB Files\\\Qbeta Grey MS2 Purple Sequence alignemnt.cxs" format
session
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 530, in customEvent
func(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 300, in defer
cxcmd(session, topic)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\htmlview.py", line 392, in cxcmd
run(session, cmd)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2612, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 41, in open
from_database=from_database, ignore_cache=ignore_cache, **kw))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 117, in open
models = handle_unknown_kw(session.models.open, paths, format=format,
name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\open.py", line 62, in handle_unknown_kw
return f(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\models.py", line 598, in open
session, filenames, format=format, name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 461, in open_multiple_data
models, status = open_data(session, fspec, format=format, name=name, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py",
line 416, in open_data
models, status = open_func(*args, **kw)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 822, in open
session.restore(stream, path=path, resize_window=resize_window)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 523, in restore
version = serialize.pickle_deserialize(stream)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 119, in pickle_deserialize
return unpickler.load()
_pickle.UnpicklingError: invalid load key, '\x04'.
_pickle.UnpicklingError: invalid load key, '\x04'.
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\serialize.py", line 119, in pickle_deserialize
return unpickler.load()
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 26.20.100.7262
OpenGL renderer: Intel(R) UHD Graphics 630
OpenGL vendor: Intel
Change History (1)
comment:1 by , 4 years ago
| Component: | Unassigned → Sessions |
|---|---|
| Platform: | → all |
| Project: | → ChimeraX |
| Resolution: | → duplicate |
| Status: | new → closed |
| Summary: | ChimeraX bug report submission → Various old errors |
Note:
See TracTickets
for help on using tickets.