Opened 4 years ago
Closed 4 years ago
#6344 closed defect (duplicate)
Various old errors
Reported by: | Owned by: | ||
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Sessions | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 0.9 (2019-01-19) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py", line 338, in __init__ self.init_available_from_cache(logger) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\\__init__.py", line 449, in init_available_from_cache abc.load_from_cache() File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\available.py", line 64, in load_from_cache b = _build_bundle(d) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\available.py", line 249, in _build_bundle keywords = _extract_extra_keywords(keywords) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\toolshed\installed.py", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.9 (2019-01-19) How to cite UCSF ChimeraX > open "C:\\\Users\\\Bon DTE Lab\\\Google Drive\\\Grad School\\\MS2 Viral Capsids\\\PDB Files\\\Qbeta Grey MS2 Purple Sequence alignemnt.cxs" format session Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 530, in customEvent func(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 300, in defer cxcmd(session, topic) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 392, in cxcmd run(session, cmd) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2612, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 62, in handle_unknown_kw return f(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\models.py", line 598, in open session, filenames, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py", line 461, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py", line 416, in open_data models, status = open_func(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 822, in open session.restore(stream, path=path, resize_window=resize_window) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 523, in restore version = serialize.pickle_deserialize(stream) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 119, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: invalid load key, '\x04'. _pickle.UnpicklingError: invalid load key, '\x04'. File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 119, in pickle_deserialize return unpickler.load() See log for complete Python traceback. Updating list of available bundles failed: 'list' object has no attribute 'split' > open "C:\\\Users\\\Bon DTE Lab\\\Google Drive\\\Grad School\\\MS2 Viral Capsids\\\PDB Files\\\Qbeta Grey MS2 Purple Sequence alignemnt.cxs" format session Traceback (most recent call last): File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py", line 530, in customEvent func(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 300, in defer cxcmd(session, topic) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\ui\widgets\htmlview.py", line 392, in cxcmd run(session, cmd) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\run.py", line 31, in run results = command.run(text, log=log) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\cli.py", line 2612, in run result = ci.function(session, **kw_args) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\commands\open.py", line 62, in handle_unknown_kw return f(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\models.py", line 598, in open session, filenames, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py", line 461, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\io.py", line 416, in open_data models, status = open_func(*args, **kw) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 822, in open session.restore(stream, path=path, resize_window=resize_window) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\session.py", line 523, in restore version = serialize.pickle_deserialize(stream) File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 119, in pickle_deserialize return unpickler.load() _pickle.UnpicklingError: invalid load key, '\x04'. _pickle.UnpicklingError: invalid load key, '\x04'. File "C:\Program Files\ChimeraX\bin\lib\site- packages\chimerax\core\serialize.py", line 119, in pickle_deserialize return unpickler.load() See log for complete Python traceback. OpenGL version: 3.3.0 - Build 26.20.100.7262 OpenGL renderer: Intel(R) UHD Graphics 630 OpenGL vendor: Intel
Change History (1)
comment:1 by , 4 years ago
Component: | Unassigned → Sessions |
---|---|
Platform: | → all |
Project: | → ChimeraX |
Resolution: | → duplicate |
Status: | new → closed |
Summary: | ChimeraX bug report submission → Various old errors |
Note:
See TracTickets
for help on using tickets.