Opened 4 years ago
Last modified 4 years ago
#6203 closed defect
Crash using File→Open on Windows and/or in return statement — at Version 1
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.19042
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program FWindows fatal exception: code 0x8001010e
Windows fatal exception: ilcode 0x8001010e
Windows fatal exception: escode 0x8001010e
Windows fatal exception: code 0x8001010e\C
hWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: .code 0x38001010e\
bWindows fatal exception: icode 0xn8001010e\
liWindows fatal exception: bcode 0x\8001010es
ite-pWindows fatal exception: acode 0xc8001010ek
ageWindows fatal exception: scode 0x\8001010ec
himerax\open_command\diWindows fatal exception: acode 0xl8001010eo
g.pyWindows fatal exception: "code 0x, line 8001010e107
in code 0x
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: icode 0xn8001010e\
lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program FileWindows fatal exception: scode 0x\8001010eC
himeWindows fatal exception: rcode 0xa8001010eX
1.Windows fatal exception: 3code 0x\8001010eb
in\Windows fatal exception: lcode 0xi8001010eb
\siWindows fatal exception: tcode 0xe8001010e-
pacWindows fatal exception: kcode 0xa8001010eg
es\Windows fatal exception: Ccode 0xh8001010ei
merWindows fatal exception: acode 0xX8001010e_
maiWindows fatal exception: ncode 0x.8001010ep
y", line Windows fatal exception: 867code 0x in 8001010ei
nitWindows fatal exception:
code 0x File 8001010e"
C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\Windows fatal exception: Ccode 0xh8001010ei
meraXWindows fatal exception: code 0x18001010e.
3\biWindows fatal exception: ncode 0x\8001010el
ib\rWindows fatal exception: ucode 0xn8001010ep
y.pyWindows fatal exception: "code 0x, line 8001010e87
in _ruWindows fatal exception: ncode 0x_8001010ec
ode
Windows fatal exception: File code 0x"8001010eC
:\PrWindows fatal exception: ocode 0xg8001010er
am FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
eraWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\oWindows fatal exception: pcode 0xe8001010en
_comWindows fatal exception: mcode 0xa8001010en
d\dWindows fatal exception: icode 0xa8001010el
ogWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in 8001010es
hoWindows fatal exception: wcode 0x_8001010eo
peWindows fatal exception: ncode 0x_8001010ef
ilWindows fatal exception: ecode 0x_8001010ed
iaWindows fatal exception: lcode 0xo8001010eg
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
ram Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.Windows fatal exception: pcode 0xy8001010e"
, line 301 in Windows fatal exception: ecode 0xv8001010eent_
loopWindows fatal exception:
code 0x File 8001010e"
C:\PWindows fatal exception: rcode 0xo8001010eg
ram Windows fatal exception: Fcode 0xi8001010el
es\Windows fatal exception: Ccode 0xh8001010ei
merWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
inWindows fatal exception: \code 0xl8001010ei
b\Windows fatal exception: scode 0xi8001010et
e-pWindows fatal exception: acode 0xc8001010ek
ages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_Windows fatal exception: mcode 0xo8001010ed
ule_as_Windows fatal exception: mcode 0xa8001010ei
n
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "CWindows fatal exception: :code 0x\8001010eP
rogWindows fatal exception: rcode 0xa8001010em
FiWindows fatal exception: lcode 0xe8001010es
\ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3\Windows fatal exception: bcode 0xi8001010en
\liWindows fatal exception: bcode 0x\8001010es
itWindows fatal exception: ecode 0x-8001010ep
ackWindows fatal exception: acode 0xg8001010ee
s\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\siWindows fatal exception: tcode 0xe8001010e-
packWindows fatal exception: acode 0xg8001010ee
s\cWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xx8001010e\
opWindows fatal exception: ecode 0xn8001010e_
coWindows fatal exception: mcode 0xm8001010ea
ndWindows fatal exception: \code 0xd8001010ei
alWindows fatal exception: ocode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e107
in 8001010e
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packagesWindows fatal exception: \code 0xC8001010eh
imerWindows fatal exception: acode 0xX8001010e_
maiWindows fatal exception: ncode 0x.8001010ep
y"Windows fatal exception: , line code 0x8678001010e in
inWindows fatal exception: icode 0xt8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimerWindows fatal exception: acode 0xX8001010e
1.3\bWindows fatal exception: icode 0xn8001010e\
lib\Windows fatal exception: scode 0xi8001010et
e-pacWindows fatal exception: kcode 0xa8001010eg
es\cWindows fatal exception: hcode 0xi8001010em
eraxWindows fatal exception: \code 0xo8001010ep
en_cWindows fatal exception: ocode 0xm8001010em
and\Windows fatal exception: dcode 0xi8001010ea
log.Windows fatal exception: pcode 0xy8001010e"
, line 107 in Windows fatal exception:
code 0x File 8001010e"
C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_cWindows fatal exception: ocode 0xm8001010em
and\Windows fatal exception: dcode 0xi8001010ea
logWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: 135code 0x in 8001010es
hoWindows fatal exception: wcode 0x_8001010eo
peWindows fatal exception: ncode 0x_8001010ef
ilWindows fatal exception: ecode 0x_8001010ed
iaWindows fatal exception: lcode 0xo8001010eg
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
iles\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bWindows fatal exception: icode 0xn8001010e\
lib\ruWindows fatal exception: ncode 0xp8001010ey
.pyWindows fatal exception: "code 0x, line 8001010e87
in _Windows fatal exception: rcode 0xu8001010en
_cWindows fatal exception: ocode 0xd8001010ee
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
raWindows fatal exception: Xcode 0x 8001010e1
.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\openWindows fatal exception: _code 0xc8001010eo
mmanWindows fatal exception: dcode 0x\8001010ed
ialWindows fatal exception: ocode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e107
in 8001010e
File "Windows fatal exception: Ccode 0x:8001010e\
PrWindows fatal exception: ocode 0xg8001010er
amWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\openWindows fatal exception: _code 0xc8001010eo
mmanWindows fatal exception: dcode 0x\8001010ed
iaWindows fatal exception: lcode 0xo8001010eg
.pWindows fatal exception: ycode 0x"8001010e, line
107 in Windows fatal exception:
File Windows fatal exception: "code 0xC8001010e:
\PWindows fatal exception: rcode 0xo8001010eg
raWindows fatal exception: mcode 0x 8001010eF
ilWindows fatal exception: ecode 0xs8001010e\
ChWindows fatal exception: icode 0xm8001010ee
rWindows fatal exception: acode 0xX8001010e
1.3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
siWindows fatal exception: tcode 0xe8001010e-
paWindows fatal exception: ccode 0xk8001010ea
geWindows fatal exception: scode 0x\8001010ec
hiWindows fatal exception: mcode 0xe8001010er
axWindows fatal exception: \code 0xu8001010ei
\gWindows fatal exception: ucode 0xi8001010e.
pyWindows fatal exception: "code 0x, line 8001010e301
in eWindows fatal exception: vcode 0xe8001010en
t_loop
File "C:\PWindows fatal exception: rcode 0xo8001010eg
ram FWindows fatal exception: icode 0xl8001010ee
s\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1Windows fatal exception: Windows fatal exception: .code 0xcode 0x8001010e3
8001010e\
bWindows fatal exception: icode 0xnWindows fatal exception: 8001010e\
lWindows fatal exception: icode 0xcode 0xb8001010e\8001010es
i
tWindows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010eWindows fatal exception: ecode 0x-8001010e
p
aWindows fatal exception: cWindows fatal exception: kWindows fatal exception: acode 0xgcode 0xe8001010ecode 0xs
\8001010eWindows fatal exception: C
code 0xh8001010eiWindows fatal exception:
code 0xmWindows fatal exception: ecode 0xr8001010ea
X8001010e_
m8001010eaWindows fatal exception: icode 0xn8001010e.
p
Windows fatal exception: ycode 0xWindows fatal exception: "code 0x, line 8001010e867
Windows fatal exception: in Windows fatal exception: 8001010ei
ncode 0xi8001010eWindows fatal exception: tcode 0x
8001010e File
"
Windows fatal exception: Ccode 0x:Windows fatal exception: \code 0xPcode 0xr8001010eo8001010eg
8001010e
r
aWindows fatal exception: mWindows fatal exception: code 0xcode 0xF8001010e8001010eiWindows fatal exception:
lcode 0xe8001010es
\Windows fatal exception: Ccode 0xh8001010ei
m
eWindows fatal exception: rWindows fatal exception: aWindows fatal exception: Xcode 0x code 0xcode 0x8001010e1
.Windows fatal exception: 3Windows fatal exception: \code 0xb8001010ei
n8001010e\Windows fatal exception: code 0xcode 0x8001010e8001010e8001010el
iWindows fatal exception: bWindows fatal exception:
\code 0xs8001010ei
Windows fatal exception: tcode 0xe8001010e-Windows fatal exception: p
code 0xa8001010ec
kWindows fatal exception: Windows fatal exception: acode 0xg8001010ee
sWindows fatal exception: \Windows fatal exception: Ccode 0xhcode 0xi8001010emcode 0x
e8001010e8001010erWindows fatal exception:
acode 0xX8001010e_
code 0xm8001010eWindows fatal exception: a
icode 0xn
8001010eWindows fatal exception: .
pcode 0xy8001010eWindows fatal exception: "code 0x, line 8001010e1018Windows fatal exception:
in code 0x
code 0x File Windows fatal exception: "code 0xC8001010e:8001010e\
Pr
Windows fatal exception: oWindows fatal exception: gcode 0xr8001010ea
mcode 0xWindows fatal exception: code 0xF8001010ei8001010el
es
\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_codeWindows fatal exception:
code 0x File 8001010e"
C:\Windows fatal exception: code 0xP8001010er
ogrWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
erWindows fatal exception: acode 0xX8001010e
1.Windows fatal exception: 3code 0x\8001010eb
iWindows fatal exception: Windows fatal exception: ncode 0x\8001010el
icode 0xWindows fatal exception: bcode 0xWindows fatal exception: 8001010ecode 0x\8001010er
u
[deleted a lot of this]
himWindows fatal exception: eWindows fatal exception: code 0xcode 0xr8001010ea
X8001010e Windows fatal exception:
1code 0x.Windows fatal exception: 38001010e\code 0xb
8001010ei
nWindows fatal exception: \code 0xWindows fatal exception: 8001010elcode 0x
i8001010eb
\Windows fatal exception: rcode 0xu8001010en
pyWindows fatal exception: .code 0xp8001010ey
", line Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e
87Windows fatal exception: in code 0x_Windows fatal exception: 8001010ercode 0xu8001010en
_
codWindows fatal exception: ecode 0x
8001010eWindows fatal exception:
code 0x File 8001010e"
C:\PWindows fatal exception: rcode 0xo8001010eg
ramWindows fatal exception: code 0xF8001010ei
leWindows fatal exception: scode 0x\8001010eC
hiWindows fatal exception: mcode 0xe8001010er
aXWindows fatal exception: code 0x18001010e.
3\Windows fatal exception: bcode 0xi8001010en
\lWindows fatal exception: icode 0xb8001010e\
ruWindows fatal exception: Windows fatal exception: code 0xcode 0xn8001010ep
8001010ey
Windows fatal exception: .code 0xpWindows fatal exception: 8001010eycode 0x
8001010e"Windows fatal exception:
code 0x, line Windows fatal exception: 8001010e197
in Windows fatal exception: _code 0xcode 0xr8001010e8001010e
u
Windows fatal exception: ncode 0x_8001010em
odWindows fatal exception: ucode 0xl8001010ee
_aWindows fatal exception: scode 0x_8001010em
aiWindows fatal exception: ncode 0x
8001010e
Thread 0xWindows fatal exception: 0000330ccode 0x (most recent call first):
8001010e File
"CWindows fatal exception: :code 0x\8001010eP
roWindows fatal exception: gcode 0xr8001010ea
m Windows fatal exception: Fcode 0xi8001010el
esWindows fatal exception: \code 0xC8001010eh
imWindows fatal exception: ecode 0xr8001010ea
X Windows fatal exception: 1code 0x.8001010e3
\bWindows fatal exception: iWindows fatal exception: ncode 0x\8001010ecode 0x
8001010e
Windows fatal exception: lcode 0xi8001010eb
\sWindows fatal exception: icode 0xWindows fatal exception: t8001010eecode 0x
8001010e-Windows fatal exception:
code 0xpWindows fatal exception: 8001010ecode 0x
8001010ea
ckagWindows fatal exception: ecode 0xs8001010e\
chiWindows fatal exception: mcode 0xeWindows fatal exception: rcode 0xa8001010ex
\o8001010ep
eWindows fatal exception: ncode 0xWindows fatal exception: _8001010ecode 0xc8001010eo
m
mWindows fatal exception: Windows fatal exception: acode 0xncode 0xd8001010e\
Windows fatal exception: dWindows fatal exception: code 0xcode 0xi8001010ea
lWindows fatal exception: ocode 0xWindows fatal exception: 8001010ecode 0x
g8001010e8001010e
8001010eWindows fatal exception: .code 0x
p8001010eWindows fatal exception:
ycode 0xWindows fatal exception: 8001010e"code 0xWindows fatal exception: , line 8001010ecode 0x135
in Windows fatal exception: Windows fatal exception: 8001010ecode 0xs
8001010eh
code 0xoWindows fatal exception: wcode 0xWindows fatal exception: _8001010e8001010eo
pcode 0xWindows fatal exception:
ecode 0xn8001010e_
f8001010eWindows fatal exception: i
lcode 0xeWindows fatal exception: _8001010ecode 0xd
i8001010eaWindows fatal exception: lcode 0xo8001010eWindows fatal exception: gcode 0x
8001010e
File "Windows fatal exception: Windows fatal exception: Ccode 0x:8001010e\
Pcode 0xrWindows fatal exception: ocode 0xg8001010er
8001010eaWindows fatal exception: mcode 0x 8001010eF
i
Windows fatal exception: lcode 0xe8001010es
\Windows fatal exception: Windows fatal exception: Ccode 0xh8001010ei
mcode 0xeWindows fatal exception: 8001010er
code 0xaWindows fatal exception: X8001010e
1.Windows fatal exception: 3code 0x\8001010eb
icode 0xn8001010e\
libWindows fatal exception: \Windows fatal exception: scode 0xi8001010et
e-Windows fatal exception: pcode 0xcode 0xa8001010e8001010ec
kWindows fatal exception: aWindows fatal exception: gcode 0xe8001010es
\cWindows fatal exception: code 0xcode 0xh8001010e8001010ei
mWindows fatal exception: eWindows fatal exception: code 0xrcode 0xa8001010ex
\8001010eo
pWindows fatal exception: ecode 0xn8001010e_
coWindows fatal exception: mcode 0xm8001010ea
ndWindows fatal exception: \code 0xd8001010ei
alWindows fatal exception: ocode 0xg8001010e.
pyWindows fatal exception: "code 0x, line 8001010e107
in
File "C:Windows fatal exception: \code 0xP8001010er
ogWindows fatal exception: rcode 0xa8001010em
FWindows fatal exception: icode 0xl8001010ee
s\Windows fatal exception: code 0xC8001010eh
imeWindows fatal exception: rcode 0xa8001010eX
1Windows fatal exception: .code 0x3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_l8001010eo
op
Windows fatal exception: File code 0x"8001010eC
:\Windows fatal exception: Pcode 0xr8001010eo
grWindows fatal exception: acode 0xm8001010e
FiWindows fatal exception: lcode 0xe8001010es
\CWindows fatal exception: hcode 0xi8001010em
eraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x0000330c (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\ctypes\__init__.py", line 510 in cast
Windows fatal exception: access violation
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\\\Users\\\mfarrugi\\\Downloads\\\95-5571-endTQ-stripped.pdb
Chain information for 95-5571-endTQ-stripped.pdb #1
---
Chain | Description
? | No description available
> select 3:428
Expected an objects specifier or a keyword
> select :3-428
6423 atoms, 6472 bonds, 426 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> ui tool show "Color Actions"
> color sel goldenrod
> color sel dark goldenrod
> color sel sienna
> color sel gold
> color sel orange
> color sel orange red
> color sel orange
> color sel dark salmon
> color sel light salmon
> color sel gold
> set bgColor dark gray
> set bgColor light gray
> set bgColor white
> set bgColor light salmon
> set bgColor light gray
> set bgColor white
> color sel light salmon
> color sel peru
> select :429-804
5629 atoms, 5672 bonds, 376 residues, 1 model selected
> color sel teal
> color sel dark cyan
> color sel teal
> hide sel atoms
> show sel cartoons
> select :1-2,83,267,381,283
237 atoms, 239 bonds, 6 residues, 1 model selected
> style sel ball
Changed 237 atom styles
> show sel atoms
> style sel stick
Changed 237 atom styles
> color sel byelement
> select C
3786 atoms, 2903 bonds, 804 residues, 1 model selected
> color sel forest green
> undo
> ui tool show "Color Actions"
> color sel green target a
> select /?:588
17 atoms, 17 bonds, 1 residue, 1 model selected
> select clear
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ui mousemode right "rotate selected models"
> ui mousemode right select
> select /?:377
19 atoms, 18 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:376
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:378
17 atoms, 16 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:375
15 atoms, 14 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select clear
> hbonds reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
795 hydrogen bonds found
> ~hbonds
> select :1-2,83,267,381,283
237 atoms, 239 bonds, 6 residues, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
39 hydrogen bonds found
> ~hbonds
> color sel byelement
> undo
> select ~sel
11985 atoms, 12080 bonds, 798 residues, 1 model selected
> hide sel atoms
> select clear
> undo
> select :1-2,83,267,381,283
237 atoms, 239 bonds, 6 residues, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
39 hydrogen bonds found
> select :1-2,83,267,381,283
237 atoms, 239 bonds, 4 pseudobonds, 6 residues, 2 models selected
> ~hbonds
> select ~sel
11985 atoms, 12080 bonds, 798 residues, 1 model selected
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select /?:486
19 atoms, 18 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:56
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:385
17 atoms, 17 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:387
24 atoms, 23 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:388
14 atoms, 13 bonds, 1 residue, 1 model selected
> hide sel surfaces
> hide sel cartoons
> select /?:404
10 atoms, 9 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select /?:405
24 atoms, 23 bonds, 1 residue, 1 model selected
> hide sel cartoons
> select :1-2,83,267,381,283
237 atoms, 239 bonds, 6 residues, 1 model selected
> select ~sel
11985 atoms, 12080 bonds, 798 residues, 1 model selected
> hide sel cartoons
> hide sel atoms
> hide sel surfaces
> select /?:2@HT
1 atom, 1 residue, 1 model selected
> select /?:2@CDC
1 atom, 1 residue, 1 model selected
> select /?:2@HT
1 atom, 1 residue, 1 model selected
> select add /?:2@CDC
2 atoms, 1 residue, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
0 hydrogen bonds found
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
0 hydrogen bonds found
> select clear
> select /?:83@HAB
1 atom, 1 residue, 1 model selected
> select /?:2@OAC
1 atom, 1 residue, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
0 hydrogen bonds found
> select add /?:83@HAB
2 atoms, 2 residues, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
0 hydrogen bonds found
> select clear
> select /?:267@HZ1
1 atom, 1 residue, 1 model selected
> select add /?:2@OAC
2 atoms, 2 residues, 1 model selected
> hbonds sel reveal true
Skipping possible acceptor with bad geometry: /? TS2 2 OAC
Wrong number of grandchild atoms for phi/psi acceptor /? TS2 2 OAC
Skipped 6 atom(s) with bad connectivities; see log for details
0 hydrogen bonds found
> select clear
> set bgColor black
> set bgColor white
> save C:/Users/mfarrugi/Documents/HMGR/GS.cxs
> save C:/Users/mfarrugi/Documents/HMGR/TS2.cxs
> select add /?:2@CDC
1 atom, 1 residue, 1 model selected
> select add /?:2@HT
2 atoms, 1 residue, 1 model selected
> select add /?:2@CAC
3 atoms, 1 residue, 1 model selected
> select subtract /?:2@CAC
2 atoms, 1 residue, 1 model selected
> ui mousemode right "link markers"
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Assigning partial charges to residue TS2 (net charge -1) with am1-bcc method
Running ANTECHAMBER command: C:/Program Files/ChimeraX
1.3/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i
C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.in.mol2 -fi mol2 -o
C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.out.mol2 -fo mol2 -c bcc
-nc -1 -j 5 -s 2 -dr n
(TS2) ``
(TS2) `Welcome to antechamber 20.0: molecular input file processor.`
(TS2) ``
(TS2) `Info: Finished reading file
(C:\Users\mfarrugi\AppData\Local\Temp\tmp88lx6z9h\ante.in.mol2); atoms read
(90), bonds read (93).`
(TS2) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`
(TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/bondtype" -j
part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`
(TS2) `bash.exe: warning: could not find /tmp, please create!`
(TS2) ``
(TS2) ``
(TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/atomtype" -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`
(TS2) `bash.exe: warning: could not find /tmp, please create!`
(TS2) `Info: Total number of electrons: 422; net charge: -1`
(TS2) ``
(TS2) `Running: "C:/Program Files/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i
sqm.in -o sqm.out`
(TS2) `bash.exe: warning: could not find /tmp, please create!`
Failure running ANTECHAMBER for residue TS2 Check reply log for details
> ui mousemode right distance
> distance /?:2@CDC /?:2@HT
Distance between /? TS2 2 CDC and HT: 1.432Å
> distance /?:2@OAC /?:83@HAB
Distance between /? TS2 2 OAC and ET2 83 HAB: 1.664Å
> save C:\Users\mfarrugi\Desktop\image6.png supersample 3
> save C:/Users/mfarrugi/Documents/HMGR/TS2.cxs
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:\\\Users\\\mfarrugi\\\Documents\\\HMGR\\\8-2456-endTQ-stripped.pdb
Chain information for 8-2456-endTQ-stripped.pdb #1
---
Chain | Description
? | No description available
OpenGL version: 3.3.0 NVIDIA 471.41
OpenGL renderer: Quadro P1000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 30DJCTO1WW
OS: Microsoft Windows 10 Pro (Build 19042)
Memory: 34,051,010,560
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i7-10700K CPU @ 3.80GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (1)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Platform |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
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