![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6043 closed defect (can't reproduce)
Unknown crash after invalid "volume appearance"
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Volume Data | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4.dev202201281136 (2022-01-28 11:36:34 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000070001b5fa000 (most recent call first):
File "/private/var/folders/xc/5yr5j0r52gzbr4g14pq3zmgh0000gn/T/AppTranslocation/73742C28-5BD1-4B70-98E1-612FF88FB1E0/d/ChimeraX_Daily.app/Contents/Library/Fram
Process: ChimeraX [2166]
Path: /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [2166]
User ID: 501
Date/Time: 2022-01-29 13:32:23.440 +0700
OS Version: macOS 11.4 (20F71)
Report Version: 12
Anonymous UUID: 61CF41F9-6F82-1816-1236-9D35F975197F
Time Awake Since Boot: 2300 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x0000000105762899
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [2166]
VM Regions Near 0x105762899:
shared memory 1055eb000-1055ec000 [ 4K] r--/r-- SM=SHM
--> mapped file 1055ec000-105851000 [ 2452K] r-x/rwx SM=COW Object_id=ab9c0d1f
mapped file 105851000-10588b000 [ 232K] rw-/rwx SM=COW Object_id=ab35c41f
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x0000000105762899 0 + 4386597017
1 ??? 0x0000000105758623 0 + 4386555427
2 ??? 0x000000010575875c 0 + 4386555740
3 ??? 0x0000000105758a73 0 + 4386556531
4 ??? 0x00000001057bc248 0 + 4386964040
5 ??? 0x00007fff20616d7d 0 + 140733736643965
6 ChimeraX 000000000000000000 0 + 0
7 ??? 0x00007fff206c9bc5 0 + 140733737376709
8 ??? 0x00007fff206c9386 0 + 140733737374598
9 ??? 0x00007fff206c864c 0 + 140733737371212
10 ??? 0x00007fff28906ab3 0 + 140733873941171
11 ??? 0x00007fff28906815 0 + 140733873940501
12 ??? 0x00007fff289065b3 0 + 140733873939891
13 ??? 0x00007fff22ec96f2 0 + 140733779318514
14 ??? 0x00007fff22ec7ec5 0 + 140733779312325
15 ??? 0x00007fff22eba239 0 + 140733779255865
16 ??? 0x000000011fc9962f 0 + 4828272175
17 ??? 0x0000000106f3cacf 0 + 4411607759
18 ??? 0x0000000106f41042 0 + 4411625538
19 ??? 0x0000000111700652 0 + 4587521618
20 ??? 0x000000010566706d 0 + 4385566829
21 ??? 0x000000010562817d 0 + 4385309053
22 ??? 0x000000010570061c 0 + 4386194972
23 ??? 0x00000001056fdab3 0 + 4386183859
24 ??? 0x0000000105628948 0 + 4385311048
25 ??? 0x000000010562a98a 0 + 4385319306
26 ??? 0x000000010570058c 0 + 4386194828
27 ??? 0x00000001056fdab3 0 + 4386183859
28 ??? 0x0000000105701283 0 + 4386198147
29 ??? 0x00000001056288d1 0 + 4385310929
30 ??? 0x000000010570058c 0 + 4386194828
31 ??? 0x00000001056fdb4b 0 + 4386184011
32 ??? 0x0000000105701283 0 + 4386198147
33 ??? 0x00000001056f770b 0 + 4386158347
34 ??? 0x00000001056f4592 0 + 4386145682
35 ??? 0x000000010566686a 0 + 4385564778
36 ??? 0x000000010570058c 0 + 4386194828
37 ??? 0x00000001056fdb4b 0 + 4386184011
38 ??? 0x0000000105701283 0 + 4386198147
39 ??? 0x00000001056288d1 0 + 4385310929
40 ??? 0x000000010570058c 0 + 4386194828
41 ??? 0x00000001056fdb4b 0 + 4386184011
42 ??? 0x0000000105701283 0 + 4386198147
43 ??? 0x00000001056288d1 0 + 4385310929
44 ??? 0x0000000105766e20 0 + 4386614816
45 ??? 0x0000000105766537 0 + 4386612535
46 ??? 0x0000000105766b3f 0 + 4386614079
47 ??? 0x0000000105766a4b 0 + 4386613835
48 ??? 0x00000001055e2dc8 0 + 4385025480
49 ??? 0x00007fff205ecf5d 0 + 140733736472413
Thread 1:: ThreadPoolServiceThread
0 ??? 0x00007fff205a51d2 0 + 140733736178130
1 ??? 0x000000011556ccc7 0 + 4652977351
2 ??? 0x00000001154f562b 0 + 4652488235
3 ??? 0x00000001154b97cb 0 + 4652242891
4 ??? 0x0000000115500a94 0 + 4652534420
5 ??? 0x0000000115514a7d 0 + 4652616317
6 ??? 0x000000011555de07 0 + 4652916231
7 ??? 0x00007fff205d18fc 0 + 140733736360188
8 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 2:: ThreadPoolForegroundWorker
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x000000011550a778 0 + 4652574584
4 ??? 0x000000011550b150 0 + 4652577104
5 ??? 0x000000011550acd4 0 + 4652575956
6 ??? 0x000000011555de07 0 + 4652916231
7 ??? 0x00007fff205d18fc 0 + 140733736360188
8 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 3:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x000000011550a778 0 + 4652574584
4 ??? 0x000000011550b150 0 + 4652577104
5 ??? 0x000000011550ac44 0 + 4652575812
6 ??? 0x000000011555de07 0 + 4652916231
7 ??? 0x00007fff205d18fc 0 + 140733736360188
8 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 4:: Chrome_IOThread
0 ??? 0x00007fff205a51d2 0 + 140733736178130
1 ??? 0x000000011556ccc7 0 + 4652977351
2 ??? 0x00000001154f562b 0 + 4652488235
3 ??? 0x00000001154b97cb 0 + 4652242891
4 ??? 0x0000000119439f06 0 + 4718829318
5 ??? 0x0000000115514a7d 0 + 4652616317
6 ??? 0x000000011555de07 0 + 4652916231
7 ??? 0x00007fff205d18fc 0 + 140733736360188
8 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 5:: NetworkConfigWatcher
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 6:: CompositorTileWorker1
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000115559e18 0 + 4652899864
2 ??? 0x00000001168115f8 0 + 4672525816
3 ??? 0x000000011555de07 0 + 4652916231
4 ??? 0x00007fff205d18fc 0 + 140733736360188
5 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 7:: Chrome_InProcGpuThread
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x000000011548a20f 0 + 4652048911
4 ??? 0x00000001154f562b 0 + 4652488235
5 ??? 0x00000001154b97cb 0 + 4652242891
6 ??? 0x0000000115514a7d 0 + 4652616317
7 ??? 0x000000011555de07 0 + 4652916231
8 ??? 0x00007fff205d18fc 0 + 140733736360188
9 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 8:: Chrome_ChildIOThread
0 ??? 0x00007fff205a51d2 0 + 140733736178130
1 ??? 0x000000011556ccc7 0 + 4652977351
2 ??? 0x00000001154f562b 0 + 4652488235
3 ??? 0x00000001154b97cb 0 + 4652242891
4 ??? 0x0000000115514a7d 0 + 4652616317
5 ??? 0x000000011555de07 0 + 4652916231
6 ??? 0x00007fff205d18fc 0 + 140733736360188
7 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 9:: VizCompositorThread
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 11:: NetworkConfigWatcher
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011550a76a 0 + 4652574570
5 ??? 0x000000011550b150 0 + 4652577104
6 ??? 0x000000011550ad34 0 + 4652576052
7 ??? 0x000000011555de07 0 + 4652916231
8 ??? 0x00007fff205d18fc 0 + 140733736360188
9 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 13:: MemoryInfra
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 14:: NetworkConfigWatcher
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011548a1db 0 + 4652048859
5 ??? 0x00000001154f562b 0 + 4652488235
6 ??? 0x00000001154b97cb 0 + 4652242891
7 ??? 0x0000000115514a7d 0 + 4652616317
8 ??? 0x000000011555de07 0 + 4652916231
9 ??? 0x00007fff205d18fc 0 + 140733736360188
10 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 15:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x000000010570058c 0 + 4386194828
6 ??? 0x00000001056fdb4b 0 + 4386184011
7 ??? 0x0000000105701283 0 + 4386198147
8 ??? 0x00000001056288d1 0 + 4385310929
9 ??? 0x00000001056fe1c3 0 + 4386185667
10 ??? 0x0000000105628948 0 + 4385311048
11 ??? 0x000000010570058c 0 + 4386194828
12 ??? 0x00000001056fda92 0 + 4386183826
13 ??? 0x0000000105628948 0 + 4385311048
14 ??? 0x000000010570058c 0 + 4386194828
15 ??? 0x00000001056fda92 0 + 4386183826
16 ??? 0x0000000105628948 0 + 4385311048
17 ??? 0x000000010562a9d2 0 + 4385319378
18 ??? 0x00000001057a53c6 0 + 4386870214
19 ??? 0x00000001057568c9 0 + 4386547913
20 ??? 0x00007fff205d18fc 0 + 140733736360188
21 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 16:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x000000010570058c 0 + 4386194828
6 ??? 0x00000001056fdb4b 0 + 4386184011
7 ??? 0x0000000105701283 0 + 4386198147
8 ??? 0x00000001056288d1 0 + 4385310929
9 ??? 0x00000001056fe1c3 0 + 4386185667
10 ??? 0x0000000105628948 0 + 4385311048
11 ??? 0x000000010570058c 0 + 4386194828
12 ??? 0x00000001056fda92 0 + 4386183826
13 ??? 0x0000000105628948 0 + 4385311048
14 ??? 0x000000010570058c 0 + 4386194828
15 ??? 0x00000001056fda92 0 + 4386183826
16 ??? 0x0000000105628948 0 + 4385311048
17 ??? 0x000000010562a9d2 0 + 4385319378
18 ??? 0x00000001057a53c6 0 + 4386870214
19 ??? 0x00000001057568c9 0 + 4386547913
20 ??? 0x00007fff205d18fc 0 + 140733736360188
21 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 17:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x000000010570058c 0 + 4386194828
6 ??? 0x00000001056fdb4b 0 + 4386184011
7 ??? 0x0000000105701283 0 + 4386198147
8 ??? 0x00000001056288d1 0 + 4385310929
9 ??? 0x00000001056fe1c3 0 + 4386185667
10 ??? 0x0000000105628948 0 + 4385311048
11 ??? 0x000000010570058c 0 + 4386194828
12 ??? 0x00000001056fda92 0 + 4386183826
13 ??? 0x0000000105628948 0 + 4385311048
14 ??? 0x000000010570058c 0 + 4386194828
15 ??? 0x00000001056fda92 0 + 4386183826
16 ??? 0x0000000105628948 0 + 4385311048
17 ??? 0x000000010562a9d2 0 + 4385319378
18 ??? 0x00000001057a53c6 0 + 4386870214
19 ??? 0x00000001057568c9 0 + 4386547913
20 ??? 0x00007fff205d18fc 0 + 140733736360188
21 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 18:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x000000010570058c 0 + 4386194828
6 ??? 0x00000001056fdb4b 0 + 4386184011
7 ??? 0x0000000105701283 0 + 4386198147
8 ??? 0x00000001056288d1 0 + 4385310929
9 ??? 0x00000001056fe1c3 0 + 4386185667
10 ??? 0x0000000105628948 0 + 4385311048
11 ??? 0x000000010570058c 0 + 4386194828
12 ??? 0x00000001056fda92 0 + 4386183826
13 ??? 0x0000000105628948 0 + 4385311048
14 ??? 0x000000010570058c 0 + 4386194828
15 ??? 0x00000001056fda92 0 + 4386183826
16 ??? 0x0000000105628948 0 + 4385311048
17 ??? 0x000000010562a9d2 0 + 4385319378
18 ??? 0x00000001057a53c6 0 + 4386870214
19 ??? 0x00000001057568c9 0 + 4386547913
20 ??? 0x00007fff205d18fc 0 + 140733736360188
21 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 19:
0 ??? 0x00007fff205a29ca 0 + 140733736167882
1 ??? 0x000000010563106f 0 + 4385345647
2 ??? 0x000000010570058c 0 + 4386194828
3 ??? 0x00000001056fda92 0 + 4386183826
4 ??? 0x0000000105701283 0 + 4386198147
5 ??? 0x00000001056288d1 0 + 4385310929
6 ??? 0x000000010570058c 0 + 4386194828
7 ??? 0x00000001056fda92 0 + 4386183826
8 ??? 0x0000000105701283 0 + 4386198147
9 ??? 0x00000001056288d1 0 + 4385310929
10 ??? 0x000000010570058c 0 + 4386194828
11 ??? 0x00000001056fdbe1 0 + 4386184161
12 ??? 0x0000000105701283 0 + 4386198147
13 ??? 0x00000001056288d1 0 + 4385310929
14 ??? 0x000000010570058c 0 + 4386194828
15 ??? 0x00000001056fdab3 0 + 4386183859
16 ??? 0x0000000105628948 0 + 4385311048
17 ??? 0x000000010562aa79 0 + 4385319545
18 ??? 0x00000001056fe1c3 0 + 4386185667
19 ??? 0x0000000105628948 0 + 4385311048
20 ??? 0x000000010570058c 0 + 4386194828
21 ??? 0x00000001056fda92 0 + 4386183826
22 ??? 0x0000000105628948 0 + 4385311048
23 ??? 0x000000010570058c 0 + 4386194828
24 ??? 0x00000001056fda92 0 + 4386183826
25 ??? 0x0000000105628948 0 + 4385311048
26 ??? 0x000000010562a9d2 0 + 4385319378
27 ??? 0x00000001057a53c6 0 + 4386870214
28 ??? 0x00000001057568c9 0 + 4386547913
29 ??? 0x00007fff205d18fc 0 + 140733736360188
30 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 20:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x0000000105644bba 0 + 4385426362
6 ??? 0x00000001056fd3fb 0 + 4386182139
7 ??? 0x0000000105628948 0 + 4385311048
8 ??? 0x00000001056fe1c3 0 + 4386185667
9 ??? 0x0000000105628948 0 + 4385311048
10 ??? 0x000000010570058c 0 + 4386194828
11 ??? 0x00000001056fda92 0 + 4386183826
12 ??? 0x0000000105628948 0 + 4385311048
13 ??? 0x000000010570058c 0 + 4386194828
14 ??? 0x00000001056fda92 0 + 4386183826
15 ??? 0x0000000105628948 0 + 4385311048
16 ??? 0x000000010562a9d2 0 + 4385319378
17 ??? 0x00000001057a53c6 0 + 4386870214
18 ??? 0x00000001057568c9 0 + 4386547913
19 ??? 0x00007fff205d18fc 0 + 140733736360188
20 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 21:
0 ??? 0x00007fff2059ecde 0 + 140733736152286
1 ??? 0x0000000105756c76 0 + 4386548854
2 ??? 0x000000013a27857e 0 + 5270635902
3 ??? 0x000000013a278126 0 + 5270634790
4 ??? 0x0000000105666934 0 + 4385564980
5 ??? 0x000000010570058c 0 + 4386194828
6 ??? 0x00000001056fdb4b 0 + 4386184011
7 ??? 0x0000000105628948 0 + 4385311048
8 ??? 0x00000001056fe1c3 0 + 4386185667
9 ??? 0x0000000105628948 0 + 4385311048
10 ??? 0x000000010570058c 0 + 4386194828
11 ??? 0x00000001056fda92 0 + 4386183826
12 ??? 0x0000000105628948 0 + 4385311048
13 ??? 0x000000010570058c 0 + 4386194828
14 ??? 0x00000001056fda92 0 + 4386183826
15 ??? 0x0000000105628948 0 + 4385311048
16 ??? 0x000000010562a9d2 0 + 4385319378
17 ??? 0x00000001057a53c6 0 + 4386870214
18 ??? 0x00000001057568c9 0 + 4386547913
19 ??? 0x00007fff205d18fc 0 + 140733736360188
20 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 22:: com.apple.NSEventThread
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x00007fff206cab5f 0 + 140733737380703
3 ??? 0x00007fff206c923f 0 + 140733737374271
4 ??? 0x00007fff206c864c 0 + 140733737371212
5 ??? 0x00007fff2304f68a 0 + 140733780915850
6 ??? 0x00007fff205d18fc 0 + 140733736360188
7 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011550a76a 0 + 4652574570
5 ??? 0x000000011550ae3d 0 + 4652576317
6 ??? 0x000000011550ac74 0 + 4652575860
7 ??? 0x000000011555de07 0 + 4652916231
8 ??? 0x00007fff205d18fc 0 + 140733736360188
9 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 24:: ThreadPoolSingleThreadSharedForeground2
0 ??? 0x00007fff2059c2ba 0 + 140733736141498
1 ??? 0x00007fff2059c62c 0 + 140733736142380
2 ??? 0x0000000115562492 0 + 4652934290
3 ??? 0x00000001155622cf 0 + 4652933839
4 ??? 0x000000011550a76a 0 + 4652574570
5 ??? 0x000000011550b150 0 + 4652577104
6 ??? 0x000000011550ad04 0 + 4652576004
7 ??? 0x000000011555de07 0 + 4652916231
8 ??? 0x00007fff205d18fc 0 + 140733736360188
9 ??? 0x00007fff205cd443 0 + 140733736342595
Thread 25:
0 ??? 0x00007fff205cd420 0 + 140733736342560
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000001 rbx: 0x000000000000006d rcx: 0x00007fff2059f04e rdx: 0x0000000000000000
rdi: 0x0000000000000009 rsi: 0x00007fe1c415592f rbp: 0x00007fe1c41558f0 rsp: 0x00007fe1c41558c0
r8: 0x00007fe1c4155f48 r9: 0x141f5d8b73fabacd r10: 0x00000001076eeeac r11: 0x0000000000000206
r12: 0x0000000000000001 r13: 0x0000000000000001 r14: 0x00007fe1c415592f r15: 0x0000000000000009
rip: 0x0000000105762899 rfl: 0x0000000000010206 cr2: 0x0000000105762899
Logical CPU: 1
Error Code: 0x00000014 (no mapping for user instruction read)
Trap Number: 14
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
0x107617000 - 0x1076b2fff dyld (852) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=848K resident=0K(0%) swapped_out_or_unallocated=848K(100%)
Writable regions: Total=993.4M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=993.4M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 2880K 6
CG image 192K 17
CoreAnimation 116K 17
CoreGraphics 12K 2
CoreUI image data 3620K 28
Foundation 16K 1
Kernel Alloc Once 1452K 6
MALLOC 285.5M 438
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 100K 25
Stack 249.2M 26
Stack Guard 56.0M 1
VM_ALLOCATE 64.6M 64
__DATA 224K 2
__DATA_CONST 32K 1
__LINKEDIT 240K 2
__TEXT 624K 1
dylib 1932K 19
dylib (reserved) 80K 9 reserved VM address space (unallocated)
mapped file 763.9M 400
shared memory 4512K 37
=========== ======= =======
TOTAL 1.8G 1122
TOTAL, minus reserved VM space 1.4G 1122
===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.4.dev202201281136 (2022-01-28)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> help help:quickstart
> set bgColor black
> lighting simple
> lighting soft
> show atoms
> hide atoms
> show atoms
> show cartoons
> hide cartoons
> style stick
Changed 0 atom styles
> style sphere
Changed 0 atom styles
> volume appearance brain
No volumes specified
> volume appearance brain
No volumes specified
> volume appearance chest
No volumes specified
> volume appearance airways
No volumes specified
> volume appearance airways
No volumes specified
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4.dev202201281136 (2022-01-28)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.4.5
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel Inc.
Locale: UTF-8
Qt version: PyQt5 5.15.2, Qt 5.15.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro12,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.7 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 427.0.0.0.0
SMC Version (system): 2.28f7
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 45 minutes
Graphics/Displays:
Intel Iris Graphics 6100:
Chipset Model: Intel Iris Graphics 6100
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x162b
Revision ID: 0x0009
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.5.30
cftime: 1.5.2
charset-normalizer: 2.0.10
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.34
ChimeraX-AtomicLibrary: 5.0
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4.dev202201281136
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.6
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.1
ChimeraX-ModelPanel: 1.3.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.8
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.7.5
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.16
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.5.1
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.3
filelock: 3.4.2
fonttools: 4.29.0
funcparserlib: 1.0.0a0
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.26
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.9.1
kiwisolver: 1.3.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.0.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.4
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.0
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.26
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.2.2
QtPy: 2.0.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.8
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Volume Data |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Unknown crash after invalid "volume appearance" |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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No useful stack trace info. Very likely not caused by any of the commands executed, the user didn't even have any data open. Probably a Qt crash.