Opened 4 years ago

Closed 4 years ago

#6019 closed defect (can't reproduce)

Crash in 'return' statement (garbage collection?)

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: pett
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description (last modified by pett) 

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.4.dev202201220431 (2022-01-22 04:31:18 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1145 in _browse_parse
  File "I:\ChimeraX 1.4.dev2022Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: 01220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1233 in parse
  File "I:\ChimeraX 1.4.dev202201220431code 0x8001010eWindows fatal exception: 

code 0x8001010e

\Windows fatal exception: bcode 0xi8001010enWindows fatal exception: \code 0x

8001010el

Windows fatal exception: code 0xWindows fatal exception: 8001010ecode 0xi8001010e



bWindows fatal exception: \Windows fatal exception: code 0xcode 0xs8001010e8001010e

i

tWindows fatal exception: ecode 0x-8001010ep

ackWindows fatal exception: acode 0xg8001010ee

s\Windows fatal exception: ccode 0xh8001010ei

merWindows fatal exception: acode 0xx8001010e\

corWindows fatal exception: ecode 0x\8001010ec

ommands\cli.py", line 2488 in _parse_arg
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2629 in _process_positional_arguments
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2853 in run
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 1043 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1145 in _browse_parse
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1233 in parse
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2488 in _parse_arg
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2629 in _process_positional_arguments
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2853 in run
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\run.py", line 38 in run
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 1043 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1145 in _browse_parse
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 1233 in parse
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2488 in _parse_arg
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2629 in Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: Windows fatal exception: code 0xcode 0x8001010e8001010e



Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

Windows fatal exception: code 0x8001010e

[lots of this deleted]

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 17 in _file_open
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\providers.py", line 45 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\__init__.py", line 37 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\__init__.py", line 1286 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\core\toolshed\info.py", line 381 in run_provider
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\toolbar\tool.py", line 165 in callback
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\ui\gui.py", line 318 in event_loop
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 87 in _run_code
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e

Thread 0x000038cc (most recent call first):
  File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 519 in _mouse_buttons_down
Windows fatal exception: access violation

===== Log before crash start =====
> cd C:/Users/Wangfei/Downloads

Current working directory is: C:\Users\Wangfei\Downloads  

> cd "H:/Alpha Fold"

Current working directory is: H:\Alpha Fold  

> ui tool show AlphaFold

> alphafold predict
> MTPKTNYIPFPSPIHQTPFQTDLAPMAAAAAAATTALNDLPDVILSNIMAGVSDVRSRNSASLVCHKWYLLERATRSALTLRGNIRDLFMLPTCFQSTSHLDLSLISPWGHPLTSAADPDSALIGHLLRHAFPSVTSLAIYARDPSTIHIVVPQWPDLERLKLVRWHQRPQTDAAGDELKLLISECGTLKSLDLSSFYCWTDDVPAALGSCPTFAANLKSLNLLNSSFSEGFKSDEIKAITKACPNLREFRASCMFDPRYIGHAGDEALVSISVNCPKLEILHLADTNALSSARSDFDPDEREGLGQEEAKINAATLIEVFSGLPLLEELALDLCNNVRDSGPALEVLNSKCPKLKSVKLGQFHGISLPVESKLDGIALCQGLESLSIRNVDDLTDMGLIAIGRGCYRLAKFEVYGCKKITVRGMRTMASLLRKTLVDVKIAACKKLGAVQSLKALEPIQDRVERLHIDCDWDCPDEEEPSDYFDSAAEYNECDDEMYSVRKRARYTYDLNSSSSGLDVNVEGYDEDKTWARLRYVSLWIFVGQLLTPLVAAGLNDCPELEEISIKVEGDCRVLSRPTVREFGLTTLLNYPKLSRMHLDCGDINGYAHTAPSGQMDLSLWERFYLIGVGHLGLTELNYWPPQDRDVNQRSLSLPAAGLLQECNRLRKLFIHGTAHEHFMMFFLRIEGLRDVQLRADYYPAPENDMSTEMRADSCSRFEVALNRRQISD

Running AlphaFold prediction  
Chain information for best_model.pdb #1  
---  
Chain | Description  
A | No description available  
  
AlphaFold prediction finished  
Results in C:\Users\Wangfei/Downloads\ChimeraX\AlphaFold\prediction_1  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.4.dev202201220431 (2022-01-22)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.13397 Core Profile Forward-Compatible Context 0
OpenGL renderer: AMD Radeon HD 8670M
OpenGL vendor: ATI Technologies Inc.

Locale: zh_CN.cp936
Qt version: PyQt5 5.15.2, Qt 5.15.2
Qt platform: windows

Manufacturer: LENOVO
Model: 20AYA05UCD
OS: Microsoft Windows 10 专业版 (Build 19042)
Memory: 8,502,304,768
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-4500U CPU @ 1.80GHz
OSLanguage: zh-CN

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.5.2
    charset-normalizer: 2.0.10
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.33
    ChimeraX-AtomicLibrary: 5.0
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4.dev202201220431
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.5
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.1
    ChimeraX-ModelPanel: 1.3.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.8
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.7.4
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.16
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.5.1
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.3
    filelock: 3.4.2
    fonttools: 4.28.5
    funcparserlib: 1.0.0a0
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.26
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.0.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.4
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 9.0.0
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.24
    psutil: 5.9.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 303
    pyzmq: 22.3.0
    qtconsole: 5.2.2
    QtPy: 2.0.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.8
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by pett, 4 years ago

Cc: pett added
Component: Unassigned → Core
Description: modified (diff)
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crash in 'return' statement (garbage collection?)

comment:2 by Tom Goddard, 4 years ago

Thread 0x000038cc (most recent call first):

File "I:\ChimeraX 1.4.dev202201220431\bin\lib\site-packages\chimerax\mouse_modes\mousemodes.py", line 519 in _mouse_buttons_down

Windows fatal exception: access violation

That line is

return self.session.ui.mouseButtons() != Qt.MouseButton.NoButton

which is making the Qt call to report the mouse buttons down which I guess crashed. I'd suspect a Qt problem here.

So often AlphaFold predict in the logs and Chinese locale, and both also make be think Qt bug. I wonder if we have enough bug reports to train some AI to decide for each bug report whether the problem is in our code or not. Or maybe get right to the heart of it, decide whether we can do anything about the bug report.

comment:3 by Tom Goddard, 4 years ago

Resolution: → can't reproduce
Status: assigned → closed
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