Opened 9 years ago
Closed 9 years ago
#547 closed defect (fixed)
"mlp" command gives ImportError: No module named 'chimerax.mlp._mlp'
Reported by: | Elaine Meng | Owned by: | Tom Goddard |
---|---|---|---|
Priority: | major | Milestone: | |
Component: | Surface/Binding Analysis | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
open 5u71
Summary of feedback from opening 5u71 fetched from pdb
notes Fetching compressed mmCIF 5u71 from http://www.pdb.org/pdb/files/5u71.cif
Fetching CCD UNK from http://ligand-expo.rcsb.org/reports/U/UNK/UNK.cif
Used mmCIF/PDBx format styling to speed up reading mmCIF file
5u71 #1, chain A: Cystic fibrosis transmembrane conductance regulator
5u71 #1, chain R: Cystic fibrosis transmembrane conductance regulator
Opened mmCIF data containing 9227 atoms and 9418 bonds
mlp protein
Traceback (most recent call last):
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/cmd_line/tool.py", line 158, in execute
cmd.run(cmd_text)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/core/commands/cli.py", line 2257, in run
result = ci.function(session, kw_args)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/mlp/mlp.py", line 60, in mlp
v = mlp_map(session, satoms, method, spacing, max_distance, nexp, name, open_map = map)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/mlp/mlp.py", line 84, in mlp_map
data, bounds = calculatefimap(atoms, method, spacing, max_dist, nexp)
File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimerax/mlp/mlp.py", line 336, in calculatefimap
from ._mlp import mlp_sum
ImportError: No module named 'chimerax.mlp._mlp'
Fixed.
Was broken 3 months ago when Greg converted bundle makefiles.