![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5355 closed defect (fixed)
Read PDB file: Can't bond an atom to itself
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3.dev202109080319 (2021-09-08 03:19:35 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000011ed7de00 (most recent call first):
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb/pdb.py", line 74 in open_pdb
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb/__init__.py", line 34 in open
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 403 in remember_data_format
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 432 in collated_open
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 181 in provider_open
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2856 in run
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/open_command/cmd.py", line 118 in cmd_open
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/cli.py", line 2856 in run
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/commands/run.py", line 36 in run
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 1912 in _open_dropped_file
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 267 in event
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 880 in init
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1029 in
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Users/anamika/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [35059]
Path: /Users/USER/Desktop/ChimeraX_Daily.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [35059]
User ID: 501
Date/Time: 2021-10-06 12:35:27.962 -0400
OS Version: macOS 11.6 (20G165)
Report Version: 12
Bridge OS Version: 3.0 (14Y908)
Anonymous UUID: 71E5E19F-E586-CEF9-CE6A-C4AF72310131
Sleep/Wake UUID: DF1C00D4-7DCF-4D99-8665-C22B37CE620B
Time Awake Since Boot: 310000 seconds
Time Since Wake: 2700 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
terminating with uncaught exception of type std::invalid_argument: Can't bond an atom to itself
abort() called
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff203bc92e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff203eb5bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff202cfbd5 raise + 26
3 libsystem_platform.dylib 0x00007fff20430d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff20340406 abort + 125
6 libc++abi.dylib 0x00007fff203aeef2 abort_message + 241
7 libc++abi.dylib 0x00007fff203a05e5 demangling_terminate_handler() + 242
8 libobjc.A.dylib 0x00007fff20299595 _objc_terminate() + 104
9 libc++abi.dylib 0x00007fff203ae307 std::__terminate(void (*)()) + 8
10 libc++abi.dylib 0x00007fff203b0dd1 __cxa_rethrow + 99
11 libobjc.A.dylib 0x00007fff20297110 objc_exception_rethrow + 37
12 com.apple.AppKit 0x00007fff22cdacb2 -[NSApplication run] + 659
13 libqcocoa.dylib 0x000000012e4da62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
14 QtCore 0x000000011d5d9acf QEventLoop::exec(QFlags) + 431
15 QtCore 0x000000011d5de042 QCoreApplication::exec() + 130
16 QtWidgets.abi3.so 0x000000011dd62702 meth_QApplication_exec_(_object*, _object*) + 82
17 org.python.python 0x000000010fda906d cfunction_call + 125
18 org.python.python 0x000000010fd6a17d _PyObject_MakeTpCall + 365
19 org.python.python 0x000000010fe4261c call_function + 876
20 org.python.python 0x000000010fe3fab3 _PyEval_EvalFrameDefault + 25219
21 org.python.python 0x000000010fd6a948 function_code_fastcall + 104
22 org.python.python 0x000000010fd6c98a method_vectorcall + 202
23 org.python.python 0x000000010fe4258c call_function + 732
24 org.python.python 0x000000010fe3fab3 _PyEval_EvalFrameDefault + 25219
25 org.python.python 0x000000010fe43283 _PyEval_EvalCode + 2611
26 org.python.python 0x000000010fd6a8d1 _PyFunction_Vectorcall + 289
27 org.python.python 0x000000010fe4258c call_function + 732
28 org.python.python 0x000000010fe3fb4b _PyEval_EvalFrameDefault + 25371
29 org.python.python 0x000000010fe43283 _PyEval_EvalCode + 2611
30 org.python.python 0x000000010fe3970b PyEval_EvalCode + 139
31 org.python.python 0x000000010fe36592 builtin_exec + 626
32 org.python.python 0x000000010fda886a cfunction_vectorcall_FASTCALL + 218
33 org.python.python 0x000000010fe4258c call_function + 732
34 org.python.python 0x000000010fe3fb4b _PyEval_EvalFrameDefault + 25371
35 org.python.python 0x000000010fe43283 _PyEval_EvalCode + 2611
36 org.python.python 0x000000010fd6a8d1 _PyFunction_Vectorcall + 289
37 org.python.python 0x000000010fe4258c call_function + 732
38 org.python.python 0x000000010fe3fb4b _PyEval_EvalFrameDefault + 25371
39 org.python.python 0x000000010fe43283 _PyEval_EvalCode + 2611
40 org.python.python 0x000000010fd6a8d1 _PyFunction_Vectorcall + 289
41 org.python.python 0x000000010fea8e20 pymain_run_module + 208
42 org.python.python 0x000000010fea8537 Py_RunMain + 1431
43 org.python.python 0x000000010fea8b3f pymain_main + 223
44 org.python.python 0x000000010fea8a4b Py_Main + 43
45 edu.ucsf.cgl.ChimeraX 0x000000010fd22dc8 main + 120
46 libdyld.dylib 0x00007fff20406f3d start + 1
Thread 1:
0 libsystem_pthread.dylib 0x00007fff203e7420 start_wqthread + 0
Thread 2:
0 libsystem_pthread.dylib 0x00007fff203e7420 start_wqthread + 0
Thread 3:
0 libsystem_pthread.dylib 0x00007fff203e7420 start_wqthread + 0
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff203bf1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000123e3fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000123e3fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000123dd3a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123ddd778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123dde150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123dddcd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 6:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123ddd778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123ddde3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000123dddc44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 7:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff203bf1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000123e3fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000123e3fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000127d0cf06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 8:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 9:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123ddd778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123dde150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123dddcd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 10:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123ddd778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123dde150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000123dddcd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 11:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123ddd778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000123ddde3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000123dddcd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 12:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000123e2ce18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001250e45f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 13:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123d5d20f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 14:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff203bf1d2 kevent64 + 10
1 QtWebEngineCore 0x0000000123e3fe6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000123e3fcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 16:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 17:
0 libsystem_kernel.dylib 0x00007fff203b630e semaphore_timedwait_trap + 10
1 libdispatch.dylib 0x00007fff20241d15 _dispatch_sema4_timedwait + 72
2 libdispatch.dylib 0x00007fff20242145 _dispatch_semaphore_wait_slow + 58
3 libdispatch.dylib 0x00007fff20250656 _dispatch_worker_thread + 284
4 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
5 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 19:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123ddd76a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000123dde150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000123dddd34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 20:
0 libsystem_kernel.dylib 0x00007fff203b630e semaphore_timedwait_trap + 10
1 libdispatch.dylib 0x00007fff20241d15 _dispatch_sema4_timedwait + 72
2 libdispatch.dylib 0x00007fff20242145 _dispatch_semaphore_wait_slow + 58
3 libdispatch.dylib 0x00007fff20250656 _dispatch_worker_thread + 284
4 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
5 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 21:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff203e7420 start_wqthread + 0
Thread 23:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 24:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 25:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 26:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 27:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 28:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 29:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 30:: Thread (pooled)
0 libsystem_kernel.dylib 0x00007fff203b8cde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff203ebe49 _pthread_cond_wait + 1298
2 QtCore 0x000000011d40faaf QWaitConditionPrivate::wait_relative(QDeadlineTimer) + 303
3 QtCore 0x000000011d40f77e QWaitConditionPrivate::wait(QDeadlineTimer) + 94
4 QtCore 0x000000011d40f69d QWaitCondition::wait(QMutex*, QDeadlineTimer) + 93
5 QtCore 0x000000011d40bccd QThreadPoolThread::run() + 605
6 QtCore 0x000000011d407619 QThreadPrivate::start(void*) + 329
7 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 31:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff203b62ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff203b662c mach_msg + 60
2 QtWebEngineCore 0x0000000123e35492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000123e352cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x0000000123d5d1db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x0000000123dc862b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x0000000123d8c7cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000123de7a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000123e30e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff203eb8fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff203e7443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011ed7de00 rcx: 0x00007fb292055a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x0000000000000006 rbp: 0x00007fb292055a80 rsp: 0x00007fb292055a58
r8: 0x00007fb292055f48 r9: 0xb8dd76a36f15cc47 r10: 0x000000011ed7de00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x0000003000000008 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff203bc92e rfl: 0x0000000000000246 cr2: 0x000000010ff937b8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
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0x7fff332fa000 - 0x7fff33339fff com.apple.AppleIDSSOAuthentication (1.0 - 1) /System/Library/PrivateFrameworks/AppleIDSSOAuthentication.framework/Versions/A/AppleIDSSOAuthentication
0x7fff3344d000 - 0x7fff3344dfff libHeimdalProxy.dylib (79) /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib
0x7fff33500000 - 0x7fff33500fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff33524000 - 0x7fff33567fff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff33568000 - 0x7fff33586fff com.apple.DuetActivityScheduler (1.0 - 1) /System/Library/PrivateFrameworks/DuetActivityScheduler.framework/Versions/A/DuetActivityScheduler
0x7fff3359b000 - 0x7fff335a7fff com.apple.IntentsFoundation (1.0 - 1) /System/Library/PrivateFrameworks/IntentsFoundation.framework/Versions/A/IntentsFoundation
0x7fff335a8000 - 0x7fff335adfff com.apple.PushKit (1.0 - 1) /System/Library/Frameworks/PushKit.framework/Versions/A/PushKit
0x7fff335ae000 - 0x7fff335e1fff com.apple.C2 (1.3 - 573) /System/Library/PrivateFrameworks/C2.framework/Versions/A/C2
0x7fff335e2000 - 0x7fff33612fff com.apple.QuickLookThumbnailing (1.0 - 135.5) /System/Library/Frameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff33613000 - 0x7fff33e14fff com.apple.vision.EspressoFramework (1.0 - 256.4.4) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff33e15000 - 0x7fff33e2cfff com.apple.ANEServices (4.76 - 4.76) /System/Library/PrivateFrameworks/ANEServices.framework/Versions/A/ANEServices
0x7fff33f41000 - 0x7fff33f43fff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff33f44000 - 0x7fff33f50fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff344d0000 - 0x7fff34520fff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff34d94000 - 0x7fff34da9fff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff34dff000 - 0x7fff34e6afff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff34f30000 - 0x7fff34f33fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff34f7d000 - 0x7fff35371fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff353a9000 - 0x7fff35821fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35b1d000 - 0x7fff35b24fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff36366000 - 0x7fff36396fff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff36397000 - 0x7fff363b7fff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff363b8000 - 0x7fff363cbfff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff363cc000 - 0x7fff363effff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff363f0000 - 0x7fff363f3fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff363f4000 - 0x7fff363f7fff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff363f8000 - 0x7fff363fbfff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff363fc000 - 0x7fff36403fff com.apple.ImageCapture (1711.5.2 - 1711.5.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff36404000 - 0x7fff375f4fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff37660000 - 0x7fff37772fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37773000 - 0x7fff37806fff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37807000 - 0x7fff37a51fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff3844d000 - 0x7fff3845cfff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff3845d000 - 0x7fff38584fff com.apple.QuickLookUIFramework (5.0 - 928.4) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff38a35000 - 0x7fff38a75fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38b71000 - 0x7fff38b71fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff39225000 - 0x7fff3922cfff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff3bc8e000 - 0x7fff3bcb0fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3bcb1000 - 0x7fff3bd48fff com.apple.AirPlaySync (1.0 - 2780.10) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3c8d9000 - 0x7fff3c95cfff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3c95d000 - 0x7fff3c960fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3c961000 - 0x7fff3c964fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3ca5d000 - 0x7fff3ca5dfff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cc17000 - 0x7fff3cc36fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3cdda000 - 0x7fff3cdf7fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3cdf8000 - 0x7fff3cdfbfff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d213000 - 0x7fff3d219fff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d38a000 - 0x7fff3d3a1fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d554000 - 0x7fff3d55ffff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d574000 - 0x7fff3d586fff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d587000 - 0x7fff3d58afff com.apple.gpusw.GPURawCounter (20.3 - 12.0) /System/Library/PrivateFrameworks/GPURawCounter.framework/Versions/A/GPURawCounter
0x7fff3d5a3000 - 0x7fff3d712fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3d713000 - 0x7fff3d96efff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3d96f000 - 0x7fff3da85fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3da86000 - 0x7fff3da97fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e0ba000 - 0x7fff3e11cfff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e11d000 - 0x7fff3e142fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e38e000 - 0x7fff3e4f0fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e4f1000 - 0x7fff3e7d2fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3e7fe000 - 0x7fff3e92afff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3e92b000 - 0x7fff3edcbfff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3edcc000 - 0x7fff3eeb4fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff40daf000 - 0x7fff40db8fff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff40e13000 - 0x7fff40e16fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff4123b000 - 0x7fff41259fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff437e8000 - 0x7fff43a5bfff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff442c4000 - 0x7fff442c8fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45c3f000 - 0x7fff45c42fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff4632e000 - 0x7fff46339fff libGPUSupportMercury.dylib (18.5.9) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff47964000 - 0x7fff479a4fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff481f2000 - 0x7fff4820dfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51623000 - 0x7fff516c2fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff518b2000 - 0x7fff518b5fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff53f4a000 - 0x7fff53f80fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff55577000 - 0x7fff5557afff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff5e142000 - 0x7fff5eba5fff libSC.dylib (4.6.20) /System/Library/Extensions/AMDShared.bundle/Contents/PlugIns/libSC.dylib
0x7fff61d9d000 - 0x7fff62228fff com.apple.driver.AppleIntelSKLGraphicsMTLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelSKLGraphicsMTLDriver.bundle/Contents/MacOS/AppleIntelSKLGraphicsMTLDriver
0x7fff62229000 - 0x7fff63210fff com.apple.driver.AppleIntelSKLGraphicsGLDriver (16.5.2 - 16.0.5) /System/Library/Extensions/AppleIntelSKLGraphicsGLDriver.bundle/Contents/MacOS/AppleIntelSKLGraphicsGLDriver
0x7fff69673000 - 0x7fff69677fff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6babe000 - 0x7fff6bac4fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bac5000 - 0x7fff6bac9fff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6baca000 - 0x7fff6bad9fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bada000 - 0x7fff6badcfff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6badd000 - 0x7fff6bae5fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bae6000 - 0x7fff6bb19fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bb1a000 - 0x7fff6bb56fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bb57000 - 0x7fff6bceafff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bceb000 - 0x7fff6bcf5fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bcf6000 - 0x7fff6be73fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6be74000 - 0x7fff6be9cfff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d135000 - 0x7fff6d18dfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6dcb7000 - 0x7fff6ded2fff com.apple.AMDMTLBronzeDriver (4.6.20 - 4.0.6) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver
0x7fff6e037000 - 0x7fff6e086fff ATIRadeonX4000SCLib.dylib (4.6.20) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib
0x7fff6e237000 - 0x7fff6e23efff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e23f000 - 0x7fff6e326fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f8a8000 - 0x7fff6f8bafff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73bb8000 - 0x7fff73bc3fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73dd9000 - 0x7fff73df1fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77969000 - 0x7fff77970fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=982.5M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=982.5M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 3792K 6
CG image 100K 8
CoreAnimation 116K 19
CoreGraphics 12K 2
CoreUI image data 2808K 21
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 694.9M 436
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 256K 3
STACK GUARD 124K 31
Stack 151.2M 32
Stack Guard 56.0M 1
VM_ALLOCATE 97.5M 55
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 43.4M 574
__DATA_CONST 24.0M 269
__DATA_DIRTY 1255K 171
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 591.1M 130
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 595.0M 552
__UNICODE 588K 1
mapped file 426.2M 51
shared memory 1276K 17
=========== ======= =======
TOTAL 2.7G 2401
TOTAL, minus reserved VM space 2.7G 2401
===== Log before crash start =====
UCSF ChimeraX version: 1.3.dev202109080319 (2021-09-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/Eric_lab_8_17/Cov2_spike_structure/Krios_data_NCCAT/mab034_32/PDB_models/7lrt-2RBDup_1down-
> coot-1.pdb
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3.dev202109080319 (2021-09-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.6.20
OpenGL renderer: AMD Radeon Pro 455 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro13,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.7 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 429.140.8.0.0
SMC Version (system): 2.38f12
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 7 days 2:41
Graphics/Displays:
Intel HD Graphics 530:
Chipset Model: Intel HD Graphics 530
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x191b
Revision ID: 0x0006
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 2
Radeon Pro 455:
Chipset Model: AMD Radeon Pro 455
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00c7
ROM Revision: 113-C980AF-908
VBIOS Version: 113-C9801AP-028
EFI Driver Version: 01.A0.908
Automatic Graphics Switching: Supported
gMux Version: 4.0.29 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.0
chardet: 4.0.0
charset-normalizer: 2.0.4
ChimeraX-AddCharge: 1.1.4
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.29.1
ChimeraX-AtomicLibrary: 4.1.4
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.3
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.4.1
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3.dev202109080319
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.4
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.1
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.1
ChimeraX-MDcrds: 2.5
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.1.1
ChimeraX-ModelPanel: 1.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.12
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.10.0
Cython: 0.29.23
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.4.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.20
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 2.11.3
jupyter-client: 6.1.12
jupyter-core: 4.7.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 1.1.1
matplotlib: 3.4.2
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.6
networkx: 2.6.2
numexpr: 2.7.3
numpy: 1.21.0
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.2.0
pip: 21.1.1
pkginfo: 1.7.0
prompt-toolkit: 3.0.20
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.9.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.2.1
qtconsole: 5.1.0
QtPy: 1.11.0
RandomWords: 0.3.0
requests: 2.25.1
scipy: 1.6.3
setuptools: 57.0.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.0.1
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.0
urllib3: 1.26.6
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.2
wheel-filename: 1.3.0
Change History (3)
comment:1 by , 4 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Read PDB file: Can't bond an atom to itself |
comment:2 by , 4 years ago
comment:3 by , 4 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
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Hi Anamika,
--Eric