![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Last modified 4 years ago
#5342 feedback defect
Crash with largely trashed stack
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.1-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x000000010caf2dc0 (most recent call first):
File "/private/var/folders/5f/26f286995vz0kshn9g93chh00000gn/T/AppTranslocation/26DE8875-9DDF-423E-B1B3-7031EB83F707/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/private/var/folders/5f/26f286995vz0kshn9g93chh00000gn/T/AppTranslocation/26DE8875-9DDF-423E-B1B3-7031EB83F707/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/private/var/folders/5f/26f286995vz0kshn9g93chh00000gn/T/AppTranslocation/26DE8875-9DDF-423E-B1B3-7031EB83F707/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/private/var/folders/5f/26f286995vz0kshn9g93chh00000gn/T/AppTranslocation/26DE8875-9DDF-423E-B1B3-7031EB83F707/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/private/var/folders/5f/26f286995vz0kshn9g93chh00000gn/T/AppTranslocation/26DE8875-9DDF-423E-B1B3-7031EB83F707/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [35377]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [35377]
User ID: 501
Date/Time: 2021-10-04 16:32:51.401 -0400
OS Version: Mac OS X 10.15.1 (19B88)
Report Version: 12
Anonymous UUID: 299A81BA-FCEC-2544-0B63-D5953C7D7032
Sleep/Wake UUID: 168DFB8A-07DB-47CA-B2C7-8E2C40AA7AC9
Time Awake Since Boot: 330000 seconds
Time Since Wake: 1100 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000010a932213
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [35377]
VM Regions Near 0x10a932213:
dylib 000000010a90f000-000000010a92f000 [ 128K] rw-/rwx SM=PRV
--> mapped file 000000010a92f000-000000010aa16000 [ 924K] r--/rwx SM=COW Object_id=11d50ead
MALLOC metadata 000000010aa16000-000000010aa17000 [ 4K] r--/rwx SM=COW
Thread 0 Crashed:: CrBrowserMain
0 dyld 0x000000010ca45260 ImageLoaderMachO::getLazyBindingInfo(unsigned int&, unsigned char const*, unsigned char const*, unsigned char*, unsigned long*, int*, char const**, bool*) + 78
1 dyld 0x000000010ca4cf87 ImageLoaderMachOCompressed::doBindFastLazySymbol(unsigned int, ImageLoader::LinkContext const&, void (*)(), void (*)()) + 135
2 dyld 0x000000010ca2dbcb dyld::fastBindLazySymbol(ImageLoader**, unsigned long) + 86
3 ??? 0x00007fff6f61330e 0 + 140735062029070
4 ??? 0x000000010a8d51b8 0 + 4472000952
5 ChimeraX 000000000000000000 0 + 0
6 ??? 0x00007fff3815e594 0 + 140734134347156
7 ??? 0x00007fff38101a20 0 + 140734133967392
8 ??? 0x00007fff38100fe3 0 + 140734133964771
9 ??? 0x00007fff36c8867d 0 + 140734112499325
10 ??? 0x00007fff36c883bd 0 + 140734112498621
11 ??? 0x00007fff36c88147 0 + 140734112497991
12 ??? 0x00007fff3530d864 0 + 140734085781604
13 ??? 0x00007fff3530c5d4 0 + 140734085776852
14 ??? 0x00007fff35306d76 0 + 140734085754230
15 ??? 0x0000000125c3562f 0 + 4928525871
16 ??? 0x0000000114f16acf 0 + 4646333135
17 ??? 0x0000000114f1b042 0 + 4646350914
18 ??? 0x0000000117390702 0 + 4684580610
19 ??? 0x000000010a6bf0c2 0 + 4469813442
20 ??? 0x000000010a6bea85 0 + 4469811845
21 ??? 0x000000010a78d665 0 + 4470658661
22 ??? 0x000000010a78a46e 0 + 4470645870
23 ??? 0x000000010a6bf3d0 0 + 4469814224
24 ??? 0x000000010a6c1a9a 0 + 4469824154
25 ??? 0x000000010a78d60c 0 + 4470658572
26 ??? 0x000000010a78a46e 0 + 4470645870
27 ??? 0x000000010a78e454 0 + 4470662228
28 ??? 0x000000010a6bf56e 0 + 4469814638
29 ??? 0x000000010a78d60c 0 + 4470658572
30 ??? 0x000000010a78a505 0 + 4470646021
31 ??? 0x000000010a78e454 0 + 4470662228
32 ??? 0x000000010a783f44 0 + 4470619972
33 ??? 0x000000010a781332 0 + 4470608690
34 ??? 0x000000010a6fb5ff 0 + 4470060543
35 ??? 0x000000010a78d60c 0 + 4470658572
36 ??? 0x000000010a78a505 0 + 4470646021
37 ??? 0x000000010a78e454 0 + 4470662228
38 ??? 0x000000010a6bf56e 0 + 4469814638
39 ??? 0x000000010a78d60c 0 + 4470658572
40 ??? 0x000000010a78a505 0 + 4470646021
41 ??? 0x000000010a78e454 0 + 4470662228
42 ??? 0x000000010a6bf56e 0 + 4469814638
43 ??? 0x000000010a6bedad 0 + 4469812653
44 ??? 0x000000010a7f0eb3 0 + 4471066291
45 ??? 0x000000010a7f0585 0 + 4471063941
46 ??? 0x000000010a7f0bdf 0 + 4471065567
47 ??? 0x000000010a7f0aeb 0 + 4471065323
48 ??? 0x000000010a695dc8 0 + 4469644744
49 ??? 0x00007fff6f6222e5 0 + 140735062090469
Thread 1:
0 ??? 0x00007fff6f76e916 0 + 140735063451926
1 ??? 0x000000010ce6627b 0 + 4511392379
2 ??? 0x00007fff6f82ed36 0 + 140735064239414
3 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 2:: ThreadPoolServiceThread
0 ??? 0x00007fff6f7732da 0 + 140735063470810
1 ??? 0x000000011b3eacc7 0 + 4752059591
2 ??? 0x000000011b37362b 0 + 4751570475
3 ??? 0x000000011b3377cb 0 + 4751325131
4 ??? 0x000000011b37ea94 0 + 4751616660
5 ??? 0x000000011b392a7d 0 + 4751698557
6 ??? 0x000000011b3dbe07 0 + 4751998471
7 ??? 0x00007fff6f82ed36 0 + 140735064239414
8 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 3:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b388778 0 + 4751656824
4 ??? 0x000000011b389150 0 + 4751659344
5 ??? 0x000000011b388c44 0 + 4751658052
6 ??? 0x000000011b3dbe07 0 + 4751998471
7 ??? 0x00007fff6f82ed36 0 + 140735064239414
8 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 4:: Chrome_IOThread
0 ??? 0x00007fff6f7732da 0 + 140735063470810
1 ??? 0x000000011b3eacc7 0 + 4752059591
2 ??? 0x000000011b37362b 0 + 4751570475
3 ??? 0x000000011b3377cb 0 + 4751325131
4 ??? 0x000000011f2b7f06 0 + 4817911558
5 ??? 0x000000011b392a7d 0 + 4751698557
6 ??? 0x000000011b3dbe07 0 + 4751998471
7 ??? 0x00007fff6f82ed36 0 + 140735064239414
8 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 5:: NetworkConfigWatcher
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 6:: CompositorTileWorker1
0 ??? 0x00007fff6f76e916 0 + 140735063451926
1 ??? 0x000000011b3d7e18 0 + 4751982104
2 ??? 0x000000011c68f5f8 0 + 4771608056
3 ??? 0x000000011b3dbe07 0 + 4751998471
4 ??? 0x00007fff6f82ed36 0 + 140735064239414
5 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 7:: Chrome_InProcGpuThread
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b30820f 0 + 4751131151
4 ??? 0x000000011b37362b 0 + 4751570475
5 ??? 0x000000011b3377cb 0 + 4751325131
6 ??? 0x000000011b392a7d 0 + 4751698557
7 ??? 0x000000011b3dbe07 0 + 4751998471
8 ??? 0x00007fff6f82ed36 0 + 140735064239414
9 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 8:: Chrome_ChildIOThread
0 ??? 0x00007fff6f7732da 0 + 140735063470810
1 ??? 0x000000011b3eacc7 0 + 4752059591
2 ??? 0x000000011b37362b 0 + 4751570475
3 ??? 0x000000011b3377cb 0 + 4751325131
4 ??? 0x000000011b392a7d 0 + 4751698557
5 ??? 0x000000011b3dbe07 0 + 4751998471
6 ??? 0x00007fff6f82ed36 0 + 140735064239414
7 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 9:: VizCompositorThread
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b38876a 0 + 4751656810
5 ??? 0x000000011b389150 0 + 4751659344
6 ??? 0x000000011b388d34 0 + 4751658292
7 ??? 0x000000011b3dbe07 0 + 4751998471
8 ??? 0x00007fff6f82ed36 0 + 140735064239414
9 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 13:: MemoryInfra
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 14:: NetworkConfigWatcher
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b3081db 0 + 4751131099
5 ??? 0x000000011b37362b 0 + 4751570475
6 ??? 0x000000011b3377cb 0 + 4751325131
7 ??? 0x000000011b392a7d 0 + 4751698557
8 ??? 0x000000011b3dbe07 0 + 4751998471
9 ??? 0x00007fff6f82ed36 0 + 140735064239414
10 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 15:: com.apple.NSEventThread
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x00007fff3810236b 0 + 140734133969771
3 ??? 0x00007fff38101907 0 + 140734133967111
4 ??? 0x00007fff38100fe3 0 + 140734133964771
5 ??? 0x00007fff35314dba 0 + 140734085811642
6 ??? 0x00007fff6f82ed36 0 + 140735064239414
7 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b38876a 0 + 4751656810
5 ??? 0x000000011b388e3d 0 + 4751658557
6 ??? 0x000000011b388c74 0 + 4751658100
7 ??? 0x000000011b3dbe07 0 + 4751998471
8 ??? 0x00007fff6f82ed36 0 + 140735064239414
9 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 17:: ThreadPoolSingleThreadSharedForeground2
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b3e02cf 0 + 4752016079
4 ??? 0x000000011b38876a 0 + 4751656810
5 ??? 0x000000011b389150 0 + 4751659344
6 ??? 0x000000011b388d04 0 + 4751658244
7 ??? 0x000000011b3dbe07 0 + 4751998471
8 ??? 0x00007fff6f82ed36 0 + 140735064239414
9 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 18:: ThreadPoolForegroundWorker
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b388778 0 + 4751656824
4 ??? 0x000000011b389150 0 + 4751659344
5 ??? 0x000000011b388cd4 0 + 4751658196
6 ??? 0x000000011b3dbe07 0 + 4751998471
7 ??? 0x00007fff6f82ed36 0 + 140735064239414
8 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 19:
0 ??? 0x00007fff6f82b56c 0 + 140735064225132
Thread 20:: ThreadPoolForegroundWorker
0 ??? 0x00007fff6f76b166 0 + 140735063437670
1 ??? 0x00007fff6f76b6cc 0 + 140735063439052
2 ??? 0x000000011b3e0492 0 + 4752016530
3 ??? 0x000000011b388778 0 + 4751656824
4 ??? 0x000000011b388e3d 0 + 4751658557
5 ??? 0x000000011b388cd4 0 + 4751658196
6 ??? 0x000000011b3dbe07 0 + 4751998471
7 ??? 0x00007fff6f82ed36 0 + 140735064239414
8 ??? 0x00007fff6f82b58f 0 + 140735064225167
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x00000000000014c8 rbx: 0x00007fff6f61304c rcx: 0x000000010ab785e7 rdx: 0x000000010a932213
rdi: 0x000000010ab785d0 rsi: 0x000000010a931358 rbp: 0x000000010ab78580 rsp: 0x000000010ab78530
r8: 0x000000010ab785d8 r9: 0x000000010ab785d4 r10: 0x000000010caf2e6c r11: 0x000000010a8d51b8
r12: 0x000000010a932820 r13: 0x000000010ca45330 r14: 0x000000010ab785d4 r15: 0x000000010a931358
rip: 0x000000010ca45260 rfl: 0x0000000000010287 cr2: 0x000000010a932213
Logical CPU: 2
Error Code: 0x00000004 (no mapping for user data write)
Trap Number: 14
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x10ca29000 - 0x10cab9b5f dyld (733.6) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 5
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 167618
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=804K resident=0K(0%) swapped_out_or_unallocated=804K(100%)
Writable regions: Total=3.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.6G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 248K 2
CG image 152K 24
CoreAnimation 120K 22
CoreGraphics 8K 1
CoreImage 8K 2
CoreUI image data 1364K 21
Foundation 24K 2
Kernel Alloc Once 268K 2
MALLOC 2.9G 931
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 3
Memory Tag 242 12K 1
OpenGL GLSL 384K 5
STACK GUARD 80K 20
Stack 145.7M 21
Stack Guard 56.0M 1
VM_ALLOCATE 112.7M 110
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 580K 1
dylib 2100K 25
dylib (reserved) 16K 3 reserved VM address space (unallocated)
mapped file 842.3M 490
shared memory 9404K 38
=========== ======= =======
TOTAL 4.5G 1742
TOTAL, minus reserved VM space 4.1G 1742
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.2.16
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir7,2
Processor Name: Dual-Core Intel Core i5
Processor Speed: 1.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 4 GB
Boot ROM Version: 190.0.0.0.0
SMC Version (system): 2.27f2
Software:
System Software Overview:
System Version: macOS 10.15.1 (19B88)
Kernel Version: Darwin 19.0.0
Time since boot: 31 minutes
Graphics/Displays:
Intel HD Graphics 6000:
Chipset Model: Intel HD Graphics 6000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1626
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash with largely trashed stack |
comment:2 by , 4 years ago
| Status: | accepted → feedback |
|---|
Note:
See TracTickets
for help on using tickets.
Hi Crystal,
--Eric