![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
#5303 closed defect (fixed)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | chimera-programmers | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.3.dev202109272116 (2021-09-27 21:16:30 UTC)
Description
This script consistently crashes ChimeraX. Every statement in the script is needed for the crash, including the x2 loop.
import gc
from chimerax.core.commands import run
for i in range(2):
run(session, "open emdb:1043")
run(session, "open 7ahc")
run(session, "close session")
gc.collect()
Fatal Python error: Segmentation fault
Thread 0x0000700018702000 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/selectors.py", line 562 in select
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/base_events.py", line 1854 in _run_once
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/base_events.py", line 596 in run_forever
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tornado/platform/asyncio.py", line 199 in start
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/iostream.py", line 76 in _thread_main
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 910 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007000176ff000 (most recent call first):
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 312 in wait
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/history.py", line 829 in run
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/history.py", line 58 in needs_sqlite
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/decorator.py", line 232 in fun
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x000000011aa8adc0 (most recent call first):
File "", line 5 in
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 3441 in run_code
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 3361 in run_ast_nodes
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 3169 in run_cell_async
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/async_helpers.py", line 68 in _pseudo_sync_runner
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 2944 in _run_cell
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/IPython/core/interactiveshell.py", line 2898 in run_cell
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/zmqshell.py", line 539 in run_cell
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/ipkernel.py", line 302 in do_execute
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tornado/gen.py", line 234 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/kernelbase.py", line 536 in execute_request
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tornado/gen.py", line 234 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/inprocess/ipkernel.py", line 80 in execute_request
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/kernelbase.py", line 261 in dispatch_shell
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tornado/gen.py", line 234 in wrapper
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/inprocess/client.py", line 177 in _dispatch_to_kernel
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ipykernel/inprocess/client.py", line 109 in execute
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/frontend_widget.py", line 285 in _execute
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/console_widget.py", line 663 in do_execute
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/history_console_widget.py", line 42 in do_execute
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/console_widget.py", line 588 in _trigger_is_complete_callback
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/console_widget.py", line 583 in _handle_is_complete_reply
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/base_frontend_mixin.py", line 138 in _dispatch
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/inprocess.py", line 46 in call_handlers
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/qtconsole/inprocess.py", line 42 in
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 880 in init
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1029 in
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Users/pett/src/chimerax/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [4901]
Path: /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: tcsh [616]
Responsible: Terminal [509]
User ID: 501
Date/Time: 2021-09-28 13:11:14.540 -0700
OS Version: Mac OS X 10.15.7 (19H1419)
Report Version: 12
Anonymous UUID: 1001EC17-01AB-23EF-FBAF-2E1668FB0851
Time Awake Since Boot: 19000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x18:
-->
__TEXT 000000010e252000-000000010e256000 [ 16K] r-x/r-x SM=COW /Users/USER/*/ChimeraX.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff69abc33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff69b78e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff699d393e raise + 26
3 libsystem_platform.dylib 0x00007fff69b6d5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtCore.abi3.so 0x0000000119771a47 PyQtSlot::call(_object*, _object*) const + 39
6 QtCore.abi3.so 0x0000000119771956 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
7 QtCore.abi3.so 0x0000000119772545 PyQtSlotProxy::unislot(void**) + 85
8 QtCore.abi3.so 0x00000001197724ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
9 QtCore 0x0000000119b4bf6e void doActivate(QObject*, int, void**) + 1118
10 QtCore 0x0000000119b43041 QObject::destroyed(QObject*) + 65
11 QtWidgets 0x000000011ebc1c3d QWidget::~QWidget() + 893
12 QtWidgets.abi3.so 0x000000011e73d157 sipQPushButton::~sipQPushButton() + 55
13 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
14 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
15 QtWidgets.abi3.so 0x000000011e763257 sipQFrame::~sipQFrame() + 55
16 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
17 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
18 QtWidgets.abi3.so 0x000000011e763257 sipQFrame::~sipQFrame() + 55
19 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
20 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
21 QtWidgets.abi3.so 0x000000011e763257 sipQFrame::~sipQFrame() + 55
22 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
23 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
24 QtWidgets 0x000000011ebc253e QWidget::~QWidget() + 14
25 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
26 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
27 QtWidgets.abi3.so 0x000000011e688da7 sipQScrollArea::~sipQScrollArea() + 55
28 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
29 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
30 QtWidgets.abi3.so 0x000000011e7709d7 sipQWidget::~sipQWidget() + 55
31 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
32 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
33 QtWidgets.abi3.so 0x000000011e7709d7 sipQWidget::~sipQWidget() + 55
34 QtCore 0x0000000119b43164 QObjectPrivate::deleteChildren() + 228
35 QtWidgets 0x000000011ebc1cae QWidget::~QWidget() + 1006
36 QtWidgets.abi3.so 0x000000011e71e017 sipQDockWidget::~sipQDockWidget() + 55
37 sip.cpython-39-darwin.so 0x000000011a807dd6 forgetObject + 182
38 sip.cpython-39-darwin.so 0x000000011a8079b5 sipWrapper_dealloc + 37
39 org.python.python 0x000000010e2f73fd subtype_dealloc + 941
40 org.python.python 0x000000010e2d64b2 dict_dealloc + 162
41 org.python.python 0x000000010e3091ef subtype_clear + 239
42 org.python.python 0x000000010e3e41d9 collect + 3193
43 org.python.python 0x000000010e3e50d7 gc_collect + 231
44 org.python.python 0x000000010e2e2934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
45 org.python.python 0x000000010e37c58c call_function + 732
46 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
47 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
48 org.python.python 0x000000010e37370b PyEval_EvalCode + 139
49 org.python.python 0x000000010e370592 builtin_exec + 626
50 org.python.python 0x000000010e2e286a cfunction_vectorcall_FASTCALL + 218
51 org.python.python 0x000000010e37c58c call_function + 732
52 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
53 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
54 org.python.python 0x000000010e3762c0 _PyEval_EvalFrameDefault + 10896
55 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
56 org.python.python 0x000000010e3762c0 _PyEval_EvalFrameDefault + 10896
57 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
58 org.python.python 0x000000010e2ad65a method_vectorcall_O + 346
59 org.python.python 0x000000010e37c58c call_function + 732
60 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
61 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
62 org.python.python 0x000000010e37c58c call_function + 732
63 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
64 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
65 org.python.python 0x000000010e37c58c call_function + 732
66 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
67 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
68 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
69 org.python.python 0x000000010e2a698a method_vectorcall + 202
70 org.python.python 0x000000010e2a4572 PyVectorcall_Call + 162
71 org.python.python 0x000000010e37a1c3 _PyEval_EvalFrameDefault + 27027
72 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
73 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
74 org.python.python 0x000000010e2a698a method_vectorcall + 202
75 org.python.python 0x000000010e37c58c call_function + 732
76 org.python.python 0x000000010e379be1 _PyEval_EvalFrameDefault + 25521
77 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
78 org.python.python 0x000000010e3712b7 builtin_next + 87
79 org.python.python 0x000000010e2e286a cfunction_vectorcall_FASTCALL + 218
80 org.python.python 0x000000010e397f5e context_run + 222
81 org.python.python 0x000000010e2e2934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
82 org.python.python 0x000000010e37c58c call_function + 732
83 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
84 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
85 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
86 org.python.python 0x000000010e37c58c call_function + 732
87 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
88 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
89 org.python.python 0x000000010e3712b7 builtin_next + 87
90 org.python.python 0x000000010e2e286a cfunction_vectorcall_FASTCALL + 218
91 org.python.python 0x000000010e397f5e context_run + 222
92 org.python.python 0x000000010e2e2934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
93 org.python.python 0x000000010e37c58c call_function + 732
94 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
95 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
96 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
97 org.python.python 0x000000010e2a698a method_vectorcall + 202
98 org.python.python 0x000000010e37c58c call_function + 732
99 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
100 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
101 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
102 org.python.python 0x000000010e2a698a method_vectorcall + 202
103 org.python.python 0x000000010e37c58c call_function + 732
104 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
105 org.python.python 0x000000010e2b5f7a gen_send_ex + 234
106 org.python.python 0x000000010e3712b7 builtin_next + 87
107 org.python.python 0x000000010e2e286a cfunction_vectorcall_FASTCALL + 218
108 org.python.python 0x000000010e397f5e context_run + 222
109 org.python.python 0x000000010e2e2934 cfunction_vectorcall_FASTCALL_KEYWORDS + 132
110 org.python.python 0x000000010e37c58c call_function + 732
111 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
112 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
113 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
114 org.python.python 0x000000010e37c58c call_function + 732
115 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
116 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
117 org.python.python 0x000000010e2a698a method_vectorcall + 202
118 org.python.python 0x000000010e37c58c call_function + 732
119 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
120 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
121 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
122 org.python.python 0x000000010e2a698a method_vectorcall + 202
123 org.python.python 0x000000010e37c58c call_function + 732
124 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
125 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
126 org.python.python 0x000000010e2a698a method_vectorcall + 202
127 org.python.python 0x000000010e37c58c call_function + 732
128 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
129 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
130 org.python.python 0x000000010e2a698a method_vectorcall + 202
131 org.python.python 0x000000010e37c58c call_function + 732
132 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
133 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
134 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
135 org.python.python 0x000000010e2a6a79 method_vectorcall + 441
136 org.python.python 0x000000010e40e3aa partial_vectorcall + 234
137 org.python.python 0x000000010e37c58c call_function + 732
138 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
139 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
140 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
141 org.python.python 0x000000010e2a698a method_vectorcall + 202
142 org.python.python 0x000000010e37c58c call_function + 732
143 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
144 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
145 org.python.python 0x000000010e2a698a method_vectorcall + 202
146 org.python.python 0x000000010e37c58c call_function + 732
147 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
148 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
149 org.python.python 0x000000010e2a6a79 method_vectorcall + 441
150 QtCore.abi3.so 0x0000000119771a47 PyQtSlot::call(_object*, _object*) const + 39
151 QtCore.abi3.so 0x0000000119771956 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
152 QtCore.abi3.so 0x0000000119772545 PyQtSlotProxy::unislot(void**) + 85
153 QtCore.abi3.so 0x00000001197724ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
154 QtCore 0x0000000119b4bf6e void doActivate(QObject*, int, void**) + 1118
155 QtCore.abi3.so 0x000000011976e240 pyqtBoundSignal_emit(_object*, _object*) + 784
156 org.python.python 0x000000010e2acc09 method_vectorcall_VARARGS + 329
157 org.python.python 0x000000010e37c58c call_function + 732
158 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
159 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
160 org.python.python 0x000000010e2a6a79 method_vectorcall + 441
161 org.python.python 0x000000010e37a1c3 _PyEval_EvalFrameDefault + 27027
162 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
163 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
164 QtCore.abi3.so 0x0000000119771a47 PyQtSlot::call(_object*, _object*) const + 39
165 QtCore.abi3.so 0x0000000119771956 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
166 QtCore.abi3.so 0x0000000119772545 PyQtSlotProxy::unislot(void**) + 85
167 QtCore.abi3.so 0x00000001197724ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
168 QtCore 0x0000000119b43b9f QObject::event(QEvent*) + 943
169 QtWidgets 0x000000011eb989ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
170 QtWidgets 0x000000011eb99e11 QApplication::notify(QObject*, QEvent*) + 497
171 QtWidgets.abi3.so 0x000000011e75bdb9 sipQApplication::notify(QObject*, QEvent*) + 233
172 QtCore 0x0000000119b18a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
173 QtCore 0x0000000119b19d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
174 libqcocoa.dylib 0x000000012cba0259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
175 libqcocoa.dylib 0x000000012cba09c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
176 com.apple.CoreFoundation 0x00007fff2f7785e2 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
177 com.apple.CoreFoundation 0x00007fff2f778581 __CFRunLoopDoSource0 + 103
178 com.apple.CoreFoundation 0x00007fff2f77839b __CFRunLoopDoSources0 + 209
179 com.apple.CoreFoundation 0x00007fff2f7770ca __CFRunLoopRun + 927
180 com.apple.CoreFoundation 0x00007fff2f7766ce CFRunLoopRunSpecific + 462
181 com.apple.HIToolbox 0x00007fff2e3a2abd RunCurrentEventLoopInMode + 292
182 com.apple.HIToolbox 0x00007fff2e3a26f4 ReceiveNextEventCommon + 359
183 com.apple.HIToolbox 0x00007fff2e3a2579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
184 com.apple.AppKit 0x00007fff2c9eb669 _DPSNextEvent + 883
185 com.apple.AppKit 0x00007fff2c9e9eb0 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
186 com.apple.AppKit 0x00007fff2c9dbbbe -[NSApplication run] + 658
187 libqcocoa.dylib 0x000000012cb9f62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
188 QtCore 0x0000000119b14acf QEventLoop::exec(QFlags) + 431
189 QtCore 0x0000000119b19042 QCoreApplication::exec() + 130
190 QtWidgets.abi3.so 0x000000011e84d702 meth_QApplication_exec_(_object*, _object*) + 82
191 org.python.python 0x000000010e2e306d cfunction_call + 125
192 org.python.python 0x000000010e2a417d _PyObject_MakeTpCall + 365
193 org.python.python 0x000000010e37c61c call_function + 876
194 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
195 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
196 org.python.python 0x000000010e2a698a method_vectorcall + 202
197 org.python.python 0x000000010e37c58c call_function + 732
198 org.python.python 0x000000010e379ab3 _PyEval_EvalFrameDefault + 25219
199 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
200 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
201 org.python.python 0x000000010e37c58c call_function + 732
202 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
203 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
204 org.python.python 0x000000010e37370b PyEval_EvalCode + 139
205 org.python.python 0x000000010e370592 builtin_exec + 626
206 org.python.python 0x000000010e2e286a cfunction_vectorcall_FASTCALL + 218
207 org.python.python 0x000000010e37c58c call_function + 732
208 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
209 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
210 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
211 org.python.python 0x000000010e37c58c call_function + 732
212 org.python.python 0x000000010e379b4b _PyEval_EvalFrameDefault + 25371
213 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
214 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
215 org.python.python 0x000000010e3e2e20 pymain_run_module + 208
216 org.python.python 0x000000010e3e2537 Py_RunMain + 1431
217 org.python.python 0x000000010e3e2b3f pymain_main + 223
218 org.python.python 0x000000010e3e2a4b Py_Main + 43
219 edu.ucsf.cgl.ChimeraX 0x000000010e255d79 main + 121
220 libdyld.dylib 0x00007fff69974cc9 start + 1
Thread 1:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff69abeb96 kevent64 + 10
1 QtWebEngineCore 0x000000012267be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012267bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012260fa94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 2:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000122619778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012261a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000122619c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 3:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff69abeb96 kevent64 + 10
1 QtWebEngineCore 0x000000012267be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012267bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000126548f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 4:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001225991db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 5:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000122619778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012261a150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000122619cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 6:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff69ab8882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69b79425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x0000000122668e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001239205f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
6 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 7:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012259920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 8:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff69abeb96 kevent64 + 10
1 QtWebEngineCore 0x000000012267be6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000012267bcc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 9:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001225991db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012259920f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001225991db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012261976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012261a150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000122619d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 13:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001225991db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001225991db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012260462b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001225c87cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x0000000122623a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
10 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 15:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2f778785 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff2f777252 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff2f7766ce CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff2cb8cea4 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 16:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001226712cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012261976a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000122619e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000122619c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 17:
0 libsystem_pthread.dylib 0x00007fff69b74b68 start_wqthread + 0
Thread 18:
0 libsystem_kernel.dylib 0x00007fff69ab8882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69b79425 _pthread_cond_wait + 698
2 org.python.python 0x000000010e3d2c76 PyThread_acquire_lock_timed + 454
3 org.python.python 0x000000010e421a1f acquire_timed + 111
4 org.python.python 0x000000010e421b30 lock_PyThread_acquire_lock + 48
5 org.python.python 0x000000010e2ace54 method_vectorcall_VARARGS_KEYWORDS + 388
6 org.python.python 0x000000010e37c58c call_function + 732
7 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
8 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x000000010e37c58c call_function + 732
11 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
13 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
14 org.python.python 0x000000010e37c58c call_function + 732
15 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
17 org.python.python 0x000000010e37a1c3 _PyEval_EvalFrameDefault + 27027
18 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
19 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
20 org.python.python 0x000000010e37a1c3 _PyEval_EvalFrameDefault + 27027
21 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
22 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
23 org.python.python 0x000000010e37c58c call_function + 732
24 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
25 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
26 org.python.python 0x000000010e37c58c call_function + 732
27 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
28 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
29 org.python.python 0x000000010e2a69d2 method_vectorcall + 274
30 org.python.python 0x000000010e4213c6 t_bootstrap + 70
31 org.python.python 0x000000010e3d28c9 pythread_wrapper + 25
32 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
33 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 19:: ZMQbg/Reaper
0 libsystem_kernel.dylib 0x00007fff69aba766 kevent + 10
1 libzmq.5.dylib 0x000000014a71e492 zmq::kqueue_t::loop() + 290
2 libzmq.5.dylib 0x000000014a74e95c zmq::worker_poller_base_t::worker_routine(void*) + 28
3 libzmq.5.dylib 0x000000014a7982d2 thread_routine(void*) + 306
4 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
5 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 20:: ZMQbg/IO/0
0 libsystem_kernel.dylib 0x00007fff69aba766 kevent + 10
1 libzmq.5.dylib 0x000000014a71e492 zmq::kqueue_t::loop() + 290
2 libzmq.5.dylib 0x000000014a74e95c zmq::worker_poller_base_t::worker_routine(void*) + 28
3 libzmq.5.dylib 0x000000014a7982d2 thread_routine(void*) + 306
4 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
5 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 21:
0 libsystem_kernel.dylib 0x00007fff69aba766 kevent + 10
1 select.cpython-39-darwin.so 0x000000010eab6e4b select_kqueue_control + 1051
2 org.python.python 0x000000010e2ad06f method_vectorcall_FASTCALL + 335
3 org.python.python 0x000000010e37c58c call_function + 732
4 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
5 org.python.python 0x000000010e37d283 _PyEval_EvalCode + 2611
6 org.python.python 0x000000010e2a48d1 _PyFunction_Vectorcall + 289
7 org.python.python 0x000000010e37c58c call_function + 732
8 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
9 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
10 org.python.python 0x000000010e37c58c call_function + 732
11 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
13 org.python.python 0x000000010e37c58c call_function + 732
14 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
15 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
16 org.python.python 0x000000010e37c58c call_function + 732
17 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
18 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
19 org.python.python 0x000000010e2a69d2 method_vectorcall + 274
20 org.python.python 0x000000010e37a1c3 _PyEval_EvalFrameDefault + 27027
21 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
22 org.python.python 0x000000010e37c58c call_function + 732
23 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
24 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
25 org.python.python 0x000000010e37c58c call_function + 732
26 org.python.python 0x000000010e379a92 _PyEval_EvalFrameDefault + 25186
27 org.python.python 0x000000010e2a4948 function_code_fastcall + 104
28 org.python.python 0x000000010e2a69d2 method_vectorcall + 274
29 org.python.python 0x000000010e4213c6 t_bootstrap + 70
30 org.python.python 0x000000010e3d28c9 pythread_wrapper + 25
31 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
32 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff69b74b68 start_wqthread + 0
Thread 23:
0 libsystem_kernel.dylib 0x00007fff69ab8882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69b79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x000000010f44321f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 24:
0 libsystem_kernel.dylib 0x00007fff69ab8882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69b79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x000000010f44321f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 25:
0 libsystem_kernel.dylib 0x00007fff69ab8882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff69b79425 _pthread_cond_wait + 698
2 libopenblas.0.dylib 0x000000010f44321f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 26:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff69ab5dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff69ab6170 mach_msg + 60
2 QtWebEngineCore 0x0000000122671492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000122619778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000122619e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000122619cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012266ce07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff69b79109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff69b74b8b thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011aa8adc0 rcx: 0x00007fd89c855a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00007fd89c855a80 rsp: 0x00007fd89c855a58
r8: 0x00007fd89c855f48 r9: 0xb1395366cd49d7cf r10: 0x000000011aa8adc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff69abc33a rfl: 0x0000000000000246 cr2: 0x00007fd89cbb8030
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff63544000 - 0x7fff63552ff5 com.apple.audio.caulk (1.0 - 32.3) /System/Library/PrivateFrameworks/caulk.framework/Versions/A/caulk
0x7fff63894000 - 0x7fff63896ff3 com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff63897000 - 0x7fff638aaffd com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff638dc000 - 0x7fff638e8ffd com.apple.perfdata (1.0 - 51.100.6) /System/Library/PrivateFrameworks/perfdata.framework/Versions/A/perfdata
0x7fff6636d000 - 0x7fff66379ff9 libAudioStatistics.dylib (1104.100) /usr/lib/libAudioStatistics.dylib
0x7fff6637a000 - 0x7fff663adffa libAudioToolboxUtility.dylib (1104.100) /usr/lib/libAudioToolboxUtility.dylib
0x7fff663b4000 - 0x7fff663e8fff libCRFSuite.dylib (48) /usr/lib/libCRFSuite.dylib
0x7fff663eb000 - 0x7fff663f5fff libChineseTokenizer.dylib (34) /usr/lib/libChineseTokenizer.dylib
0x7fff663f6000 - 0x7fff6647efff libCoreStorage.dylib (551.0.1) /usr/lib/libCoreStorage.dylib
0x7fff66481000 - 0x7fff66483ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff664c9000 - 0x7fff66680ffb libFosl_dynamic.dylib (100.4) /usr/lib/libFosl_dynamic.dylib
0x7fff666a7000 - 0x7fff666adff3 libIOReport.dylib (54) /usr/lib/libIOReport.dylib
0x7fff6678f000 - 0x7fff66796fff libMatch.1.dylib (36) /usr/lib/libMatch.1.dylib
0x7fff667c5000 - 0x7fff667e5ff7 libMobileGestalt.dylib (826.140.5) /usr/lib/libMobileGestalt.dylib
0x7fff66865000 - 0x7fff66942ff7 libSMC.dylib (20) /usr/lib/libSMC.dylib
0x7fff66957000 - 0x7fff66958fff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib
0x7fff66959000 - 0x7fff669e4ff7 libTelephonyUtilDynamic.dylib (5017.1) /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff669e5000 - 0x7fff669e6fff libThaiTokenizer.dylib (3) /usr/lib/libThaiTokenizer.dylib
0x7fff669fe000 - 0x7fff66a14fff libapple_nghttp2.dylib (1.39.2) /usr/lib/libapple_nghttp2.dylib
0x7fff66a49000 - 0x7fff66abbff7 libarchive.2.dylib (72.140.2) /usr/lib/libarchive.2.dylib
0x7fff66abc000 - 0x7fff66b55fe5 libate.dylib (3.0.1) /usr/lib/libate.dylib
0x7fff66b59000 - 0x7fff66b59ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff66b5a000 - 0x7fff66c1effe libboringssl.dylib (283.120.1) /usr/lib/libboringssl.dylib
0x7fff66c1f000 - 0x7fff66c2fffb libbsm.0.dylib (60.100.1) /usr/lib/libbsm.0.dylib
0x7fff66c30000 - 0x7fff66c3cfff libbz2.1.0.dylib (44) /usr/lib/libbz2.1.0.dylib
0x7fff66c3d000 - 0x7fff66c8ffff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff66c90000 - 0x7fff66ca5ffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff66ca6000 - 0x7fff66ca6fff libcharset.1.dylib (59) /usr/lib/libcharset.1.dylib
0x7fff66ca7000 - 0x7fff66cb8fff libcmph.dylib (8) /usr/lib/libcmph.dylib
0x7fff66cb9000 - 0x7fff66cd0fd7 libcompression.dylib (87.1) /usr/lib/libcompression.dylib
0x7fff66faa000 - 0x7fff66fc0ff7 libcoretls.dylib (167) /usr/lib/libcoretls.dylib
0x7fff66fc1000 - 0x7fff66fc2fff libcoretls_cfhelpers.dylib (167) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff67465000 - 0x7fff67569fef libcrypto.44.dylib (47.140.1) /usr/lib/libcrypto.44.dylib
0x7fff6756c000 - 0x7fff67577fff libcsfde.dylib (551.0.1) /usr/lib/libcsfde.dylib
0x7fff6757f000 - 0x7fff675deff7 libcups.2.dylib (483.8) /usr/lib/libcups.2.dylib
0x7fff675e0000 - 0x7fff67645ff7 libcurl.4.dylib (118.120.6) /usr/lib/libcurl.4.dylib
0x7fff676e8000 - 0x7fff676e8fff libenergytrace.dylib (21) /usr/lib/libenergytrace.dylib
0x7fff676e9000 - 0x7fff67703ff7 libexpat.1.dylib (19.60.3) /usr/lib/libexpat.1.dylib
0x7fff67704000 - 0x7fff67710ffb libexslt.0.dylib (16.12) /usr/lib/libexslt.0.dylib
0x7fff67711000 - 0x7fff67713fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff67714000 - 0x7fff67719f57 libffi.dylib (26) /usr/lib/libffi.dylib
0x7fff67722000 - 0x7fff67727fff libgermantok.dylib (24) /usr/lib/libgermantok.dylib
0x7fff67728000 - 0x7fff67731ff7 libheimdal-asn1.dylib (564.140.7) /usr/lib/libheimdal-asn1.dylib
0x7fff67732000 - 0x7fff67822fff libiconv.2.dylib (59) /usr/lib/libiconv.2.dylib
0x7fff67823000 - 0x7fff67a7afff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff67a94000 - 0x7fff67a95fff liblangid.dylib (133) /usr/lib/liblangid.dylib
0x7fff67a96000 - 0x7fff67aaeff3 liblzma.5.dylib (16) /usr/lib/liblzma.5.dylib
0x7fff67ac6000 - 0x7fff67b6dff7 libmecab.dylib (883.11) /usr/lib/libmecab.dylib
0x7fff67b6e000 - 0x7fff67dd0ff1 libmecabra.dylib (883.11) /usr/lib/libmecabra.dylib
0x7fff6813d000 - 0x7fff6816cfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6829c000 - 0x7fff68718ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff68719000 - 0x7fff68730fff libnetworkextension.dylib (1095.140.2) /usr/lib/libnetworkextension.dylib
0x7fff687b9000 - 0x7fff687ecfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff687ed000 - 0x7fff687eeff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff687ff000 - 0x7fff68803fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff68806000 - 0x7fff6883cfff libpcap.A.dylib (89.120.2) /usr/lib/libpcap.A.dylib
0x7fff6887c000 - 0x7fff6888aff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6888b000 - 0x7fff6888eff3 libpmenergy.dylib (214.120.2) /usr/lib/libpmenergy.dylib
0x7fff6888f000 - 0x7fff68891fff libpmsample.dylib (214.120.2) /usr/lib/libpmsample.dylib
0x7fff688c0000 - 0x7fff688d8fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff688da000 - 0x7fff6891eff7 libsandbox.1.dylib (1217.141.6) /usr/lib/libsandbox.1.dylib
0x7fff6891f000 - 0x7fff68931ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff68932000 - 0x7fff68933ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff68934000 - 0x7fff68b1eff7 libsqlite3.dylib (308.6) /usr/lib/libsqlite3.dylib
0x7fff68c12000 - 0x7fff68c3fffb libssl.46.dylib (47.140.1) /usr/lib/libssl.46.dylib
0x7fff68d14000 - 0x7fff68d6eff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff68d6f000 - 0x7fff68d72ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff68d73000 - 0x7fff68d80ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff68d86000 - 0x7fff68e68fff libxml2.2.dylib (33.9) /usr/lib/libxml2.2.dylib
0x7fff68e6c000 - 0x7fff68e94fff libxslt.1.dylib (16.12) /usr/lib/libxslt.1.dylib
0x7fff68e95000 - 0x7fff68ea7ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff69756000 - 0x7fff6975bff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff6975c000 - 0x7fff69767fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff69768000 - 0x7fff6976ffff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff69770000 - 0x7fff69779ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff6977a000 - 0x7fff6980cfdb libcorecrypto.dylib (866.140.2) /usr/lib/system/libcorecrypto.dylib
0x7fff69919000 - 0x7fff69959ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff6995a000 - 0x7fff69990fff libdyld.dylib (750.7) /usr/lib/system/libdyld.dylib
0x7fff69991000 - 0x7fff69991ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff69992000 - 0x7fff6999eff3 libkxld.dylib (6153.141.40.1) /usr/lib/system/libkxld.dylib
0x7fff6999f000 - 0x7fff6999fff7 liblaunch.dylib (1738.140.3) /usr/lib/system/liblaunch.dylib
0x7fff699a0000 - 0x7fff699a5ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff699a6000 - 0x7fff699a8ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff699a9000 - 0x7fff699aaff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff699ab000 - 0x7fff699c2ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff699c3000 - 0x7fff699c3ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff699c4000 - 0x7fff69a4bfff libsystem_c.dylib (1353.100.4) /usr/lib/system/libsystem_c.dylib
0x7fff69a4c000 - 0x7fff69a4fffb libsystem_configuration.dylib (1061.141.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff69a50000 - 0x7fff69a53fff libsystem_coreservices.dylib (114.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff69a54000 - 0x7fff69a5cfff libsystem_darwin.dylib (1353.100.4) /usr/lib/system/libsystem_darwin.dylib
0x7fff69a5d000 - 0x7fff69a64fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff69a65000 - 0x7fff69a66ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff69a67000 - 0x7fff69ab4ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff69ab5000 - 0x7fff69ae1ff7 libsystem_kernel.dylib (6153.141.40.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff69ae2000 - 0x7fff69b29fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff69b2a000 - 0x7fff69b51fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff69b52000 - 0x7fff69b5fffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff69b60000 - 0x7fff69b69ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff69b6a000 - 0x7fff69b72fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff69b73000 - 0x7fff69b7dfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff69b7e000 - 0x7fff69b82ff3 libsystem_sandbox.dylib (1217.141.6) /usr/lib/system/libsystem_sandbox.dylib
0x7fff69b83000 - 0x7fff69b85fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff69b86000 - 0x7fff69b8dffb libsystem_symptoms.dylib (1238.120.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff69b8e000 - 0x7fff69ba4ff2 libsystem_trace.dylib (1147.120.1) /usr/lib/system/libsystem_trace.dylib
0x7fff69ba6000 - 0x7fff69babff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff69bac000 - 0x7fff69be1ffe libxpc.dylib (1738.140.3) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 11874
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.0G resident=0K(0%) swapped_out_or_unallocated=1.0G(100%)
Writable regions: Total=550.1M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=550.1M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 336K 2
CG image 72K 13
CoreAnimation 80K 16
CoreGraphics 8K 1
CoreImage 8K 2
CoreUI image data 992K 16
Dispatch continuations 8192K 1
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 226.5M 575
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated)
Mach message 24K 3
OpenGL GLSL 384K 4
STACK GUARD 104K 26
Stack 172.2M 27
Stack Guard 56.0M 1
VM_ALLOCATE 138.1M 69
__DATA 52.7M 567
__DATA_CONST 616K 37
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 479.8M 217
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 530.4M 540
__UNICODE 564K 1
mapped file 400.5M 53
shared memory 2840K 24
=========== ======= =======
TOTAL 2.1G 2215
TOTAL, minus reserved VM space 2.1G 2215
===== Log before crash start =====
UCSF ChimeraX version: 1.3.dev202109272116 (2021-09-27)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show Shell
> open emdb:1043
Opened emdb 1043 as #1, grid size 128,128,128, pixel 1.6, shown at level
0.0738, step 1, values float32
> open 7ahc
7ahc title:
OpuA apo inward-facing [more info...]
Chain information for 7ahc #2
---
Chain | Description | UniProt
A B | ABC transporter permease subunit | A0A0V8ETW8_LACLL
C D | ABC-type proline/glycine betaine transport system ATPase component |
A0A0R2NIU5_LACLL
> close session
> open emdb:1043
Opened emdb 1043 as #1, grid size 128,128,128, pixel 1.6, shown at level
0.0738, step 1, values float32
> open 7ahc
7ahc title:
OpuA apo inward-facing [more info...]
Chain information for 7ahc #2
---
Chain | Description | UniProt
A B | ABC transporter permease subunit | A0A0V8ETW8_LACLL
C D | ABC-type proline/glycine betaine transport system ATPase component |
A0A0R2NIU5_LACLL
> close session
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3.dev202109272116 (2021-09-27)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show Shell
OpenGL version: 4.1 INTEL-14.7.18
OpenGL renderer: Intel(R) Iris(TM) Pro Graphics 6200
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac16,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Memory: 16 GB
Boot ROM Version: 427.140.8.0.0
SMC Version (system): 2.32f21
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1419)
Kernel Version: Darwin 19.6.0
Time since boot: 5:33
Graphics/Displays:
Intel Iris Pro Graphics 6200:
Chipset Model: Intel Iris Pro Graphics 6200
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1622
Revision ID: 0x000a
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
iMac:
Display Type: LCD
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: ('en_US', 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.0
chardet: 4.0.0
charset-normalizer: 2.0.3
ChimeraX-AddCharge: 1.1.4
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.1
ChimeraX-AtomicLibrary: 4.1.4
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3.dev202109272116
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-GaudiViewX: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.1
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.1
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2
ChimeraX-ModelPanel: 1.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.3
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.4
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.10.0
Cython: 0.29.23
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.3.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.20
imagecodecs: 2021.4.28
imagesize: 1.2.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 2.11.3
jupyter-client: 6.1.12
jupyter-core: 4.7.1
kiwisolver: 1.3.1
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 1.1.1
matplotlib: 3.4.2
matplotlib-inline: 0.1.2
MolecularDynamicsViewer: 1.2
msgpack: 1.0.2
netCDF4: 1.5.6
networkx: 2.6.2
numexpr: 2.7.3
numpy: 1.21.0
numpydoc: 1.1.0
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.2.0
pip: 21.1.1
pkginfo: 1.7.0
prompt-toolkit: 3.0.19
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.9.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
PyYAML: 5.4.1
pyzmq: 22.2.0
qtconsole: 5.1.0
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.25.1
scipy: 1.6.3
Send2Trash: 1.5.0
setuptools: 57.0.0
sfftk-rw: 0.7.0.post1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.0.1
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.26.6
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.2
wheel-filename: 1.3.0
Change History (15)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Reporter: | changed from to |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:4 by , 4 years ago
Okay, I think I understand the problem, though I haven't yet figured out what to do about it. The problem is that ui.widgets.ColorButton tries to prevent the color chooser from calling back into a dead button by connecting to its own 'destroyed' signal and disconnecting the callback. The problem is that until thorough garbage happens, sip holds onto a reference to the QPushButton and therefore the C++ doesn't get destroyed and generate the signal until well after the Python object is toast, so the connected lambda function is long gone.
comment:6 by , 4 years ago
| Resolution: | → fixed |
|---|---|
| Status: | accepted → closed |
Using del seems to work fine.
follow-up: 7 comment:7 by , 4 years ago
This sounds like a serious PyQt bug that could cause no end of crashes. Could you explain what you found out? It sounds like a callback was connected to a PyQt signal (QPushButton.destroyed) and then PyQt released its reference count on the callback allowing it to be freed by Python, and then called it later. That is a disaster if PyQt can call a callback that it does not hold a reference count for. Is this problem likely the same as the dozens of other garbage collection ChimeraX crashes we have seen?
comment:8 by , 4 years ago
I'm not really sure I understand it, since I don't know how PyQt/sip manages reference counts and in what order it disposes of things during object destruction. Here's what I know. From the stack trace it's pretty clear that garbage collection is disposing of one of the two Volume Viewer instances that have been closed. Destroying the QDockWidget causes a series of calls that results in ~QPushButton being called, which is almost certainly a ColorButton. Its 'destroyed' signal gets emitted which almost directly causes the crash as it tries to use some pointer that is null.
Here's what I don't know. Has the Python side of the QPushButton already been destroyed/collected? It don't know at what point PyQt/sip decides that it's safe to destroy the Python side of an object (well, let its ref count go to zero). Seems like we would have to look at the PyQt source code to figure that out.
follow-up: 9 comment:9 by , 4 years ago
We are connecting a callback to the destroyed signal in 5 different places. So if it is causing very hard to debug crashes we want to make sure we fix all the cases. ./bundles/ui/src/gui.py
comment:10 by , 4 years ago
Speaking for the ui ones, the first one is calling back to the GUI, which will always be around so that's not a problem. The second one is gone now. The third one is setting the callback to a global function, which will also always be around, so that should be okay.
follow-up: 11 comment:11 by , 4 years ago
The first one is calling back to a lambda just like the crash you fixed. I thought the problem in the case you fixed was that the lambda lost its reference counts, was garbage collected, and then later got called.
comment:12 by , 4 years ago
You are correct. Nonetheless I believe it's okay because the gui is holding a reference to the Python side of the color dialog, so since I'm guessing that it's the color dialog that holds the reference to the lambda then everything will be okay and exist as the 'destroyed' signal tries to execute the lambda. The execution of the lambda removes the gui's reference to the color dialog.
follow-up: 13 comment:13 by , 4 years ago
This does not make sense to me. How could the color dialog hold a reference to the lambda? The only think that can make a reference to the lambda is the PyQt widget.destroyed.connect() call which would suggest that only that widget holds a reference, and apparently it releases it while maybe some C++ code can still call the lambda. I think we need to understand this PyQt bug and make the code transparently obvious that it will not hit it, and comment the code too to remind us in the future why we seem to be needlessly holding an extra reference to the callback.
comment:14 by , 4 years ago
I was inexact in my wording. The color dialog holds a reference to it's signals, and the signals hold references to all the callback registered via connect(). As long as the gui holds a reference to the color dialog, all of those things will remain "live" and will not be garbage collected.
My guess as to why the other scenario was problematic is that the ColorButton had been garbage collected before its C++ side fired its 'destroyed' signal. The containing QDockWidget hadn't been garbage collected because it was involved in a reference cycle that required a full garbage collection run to resolve. I could be wrong, but I haven't heard any other ideas.
follow-up: 15 comment:15 by , 4 years ago
Hi ChimeraX heroes, I feel bad for contacting you so often with all these issues. Yesterday I worked all day in chimeraX and it was fine. Today I opened the program and its not responding when I try to open any mrc file. Even when I reset to defaults by renaming the ChimeraX folder it. This is how it looks in the task manager (maybe that can give you an idea of what is happening). I really don't know what to do here.Should I reinstall Chimera? [image: image.png] Unfortunately, it doesnt give me the option to send log information. But I can tell you that this is 1.2.5 version. Do you also want the AppData folder for this? Best regards Panagiotis On Wed, Sep 29, 2021 at 10:13 PM ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> wrote:
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