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#5292 closed defect (duplicate)

Session code trying to take len() of 'SurfaceUpdaters'

Reported by:	yen-li.li@…	Owned by:	Greg Couch
Priority:	normal	Milestone:
Component:	Sessions	Version:
Keywords:		Cc:
Blocked By:		Blocking:
Notify when closed:		Platform:	all
Project:	ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.19042
ChimeraX Version: 1.3.dev202109172329 (2021-09-17 23:29:10 UTC)
Description
Error showed up when I attempted to save cxs file


Log:
UCSF ChimeraX version: 1.3.dev202109172329 (2021-09-17)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open E:\Krios\20210423\csrelion\6221\coot\rlnJ121_csJ245csJ280-coot-2.pdb
> format pdb

Chain information for rlnJ121_csJ245csJ280-coot-2.pdb #1  
---  
Chain | Description  
A F | No description available  
B G | No description available  
C H | No description available  
D I | No description available  
E J | No description available  
  

> open E:\Krios\20210423\csrelion\6221\coot\rlnJ121_4M4_denmod_map.ccp4 format
> ccp4

Opened rlnJ121_4M4_denmod_map.ccp4 as #2, grid size 130,175,176, pixel 0.835,
shown at level 0.554, step 1, values float32  

> hide atoms

> show cartoons

> hide #!2 models

> select #1/A:13,15,19,29, show #1/F:13,15,19,29

156 atoms, 152 bonds, 8 residues, 1 model selected  

> show #!2 models

> transparency 50

> volume showOutlineBox true

> ui mousemode right "crop volume"

> volume #2 region 0,0,0,129,104,175

> volume #2 region 0,0,0,129,74,175

> volume #2 region 0,34,0,129,74,175

> volume #2 region 0,34,27,129,74,175

> volume #2 region 0,34,27,129,74,123

> volume #2 region 20,34,27,129,74,123

> volume showOutlineBox false

> select #1/A:13,15,19,29, show #1/F:13,15,19,29

156 atoms, 152 bonds, 8 residues, 1 model selected  

> hide #1 ribbons

> show #1/A:13-29, #1/F:13-29

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show #1/A:13-29, #1/F:13-29 ribbon

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show #1/A:13-29, show #1/F:13-29 ribbons

> style sel stick

Changed 156 atom styles  

> select #1/A:13-29, select #1/F:13-29 ribbon

Expected a keyword  

> style sel stick

Changed 156 atom styles  

> show sel atoms

> select #1/A:13-30, select #1/F:13-30 ribbon

Expected a keyword  

> select #1/A:13-30, select #1/F:13-30

654 atoms, 664 bonds, 36 residues, 1 model selected  

> style sel stick

Changed 654 atom styles  

> show sel atoms

> hide sel atoms

> show #1/A:13-30, select #1/F:13-30

> hide sel atoms

> show #1/A:13-30, select #1/F:13-30

> color sel byhetero

> ui tool show "Surface Zone"

> surface zone #2 nearAtoms sel distance 2.07

> volume #2 level 0.5458

> volume #2 level 0.4215

> volume #2 style mesh

> set bgColor white

> volume #1 subdivideSurface true

No volumes specified  

> volume #2 subdivideSurface true

> volume #2 level 0.3438

> surface zone #2 nearAtoms sel distance 1.66

> volume #2 subdivideSurface true subdivisionlevels2

Expected a keyword  

> volume #2 subdivideSurface true subdivisionLevels 2

> surface zone #2 nearAtoms sel distance 1.66

> surface zone #2 nearAtoms sel distance 2

[Repeated 1 time(s)]

> volume #2 subdivideSurface true subdivisionLevels 2

> volume #2 level 0.3

> volume #2 level 0.28

> surface zone #2 nearAtoms sel distance 3

> surface zone #2 nearAtoms sel distance 1

> surface zone #2 nearAtoms sel distance 1.8

> volume #2 level 0.3

> volume #2 level 0.26

> volume #2 level 0.3

> surface zone #2 nearAtoms sel distance 1

> surface zone #2 nearAtoms sel distance 10

> surface zone #2 nearAtoms sel distance 10.5

> surface zone #2 nearAtoms sel distance 10

> surface zone #2 nearAtoms sel distance 1

> surface zone #2 nearAtoms sel distance 1.5

> surface zone #2 nearAtoms sel distance 1

> surface zone #2 nearAtoms sel distance 1.6

[Repeated 1 time(s)]

> surface zone #2 nearAtoms sel distance 2

[Repeated 1 time(s)]

> surface zone #2 nearAtoms sel distance 3

[Repeated 1 time(s)]

> select /F:16

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select up

116 atoms, 117 bonds, 7 residues, 1 model selected  

> select down

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select down

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select clear

> select down

Nothing selected  

> select down

Nothing selected  

> color #1/F pink

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> color #1/F green

> color byhetero

No atoms selected for zoning  

[Repeated 4 time(s)]

> hide #!2 models

> show #!2 models

> volume #2 level 0.4

> volume #2 level 0.42

> volume #2 level 0.5

No atoms selected for zoning  

[Repeated 15 time(s)]

> select clear

> select #1/A:13-30, select #1/F:13-30

654 atoms, 664 bonds, 36 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.9

> select clear

No atoms selected for zoning  

[Repeated 3 time(s)]

> volume #2 level 0.3

> hide #!2 models

> hide atoms

> select #1/A:13,15,19,29, show #1/F:13,15,19,29

156 atoms, 152 bonds, 8 residues, 1 model selected  

> style sel stick

Changed 156 atom styles  

> show sel atoms

> show #!2 models

> volume #2 level 0.5

> volume #2 level 0.4

> surface zone #2 nearAtoms sel distance 2.4

> select #1/A:13-20,29, show #1/F:13-20,29

322 atoms, 324 bonds, 18 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.4

> select #1/A:13-20,26-29, show #1/F:13-20,26-29

420 atoms, 422 bonds, 24 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.4

[Repeated 2 time(s)]

> select #1/A:13-20,28-29, show #1/F:13-20,28-29

344 atoms, 346 bonds, 20 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.4

> select #1/A:13-20,28-30, show #1/F:13-20,28-30

392 atoms, 394 bonds, 22 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.4

[Repeated 1 time(s)]

> select #1/A:13-20,28-30, select #1/F:13-20,28-30

392 atoms, 394 bonds, 22 residues, 1 model selected  

> surface zone #2 nearAtoms sel distance 2.4

> show #1/A:13-20,28-30, show #1/F:13-20,28-30

> select clear

> show #1/A:12-20,28-30, show #1/F:12-20,28-30

> hide atoms

> show cartoons

> hide cartoons

> show cartoons

> hide cartoons

> select #1/A:12-20,28-30, select #1/F:12-20,28-30

426 atoms, 428 bonds, 24 residues, 1 model selected  

> show sel cartoons

> style sel stick

Changed 426 atom styles  

> show sel atoms

> surface zone #2 nearAtoms sel distance 2.3

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.3

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.3

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.3

> volume #2 level 0.45

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.3

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.7

> surface zone #2 nearAtoms sel distance 1.6

> surface zone #2 nearAtoms sel distance 1.5

> surface zone #2 nearAtoms sel distance 1.6

> surface zone #2 nearAtoms sel distance 1.7

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> volume #2 level 0.6

> volume #2 level 0.5

> volume #2 level 0.4

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.3

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> volume #2 level 0.38

> volume #1 subdivideSurface true

No volumes specified  

> volume #2 subdivideSurface true subdivisionLevels 1

> volume #2 subdivideSurface true subdivisionLevels 2

> volume #2 subdivideSurface true subdivisionLevels 1.5

Invalid "subdivisionLevels" argument: Expected an integer  

> volume #2 level 0.35

> surface zone #2 nearAtoms sel distance 2.1

> volume #2 level 0.4

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.7

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface dust #2 size 8.35

[Repeated 1 time(s)]

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2.2

> surface zone #2 nearAtoms sel distance 2.1

> surface zone #2 nearAtoms sel distance 2

> surface zone #2 nearAtoms sel distance 1.9

> surface zone #2 nearAtoms sel distance 1.8

> surface zone #2 nearAtoms sel distance 1.7

> volume #2 level 0.38

> volume #2 level 0.36

> volume #2 level 0.38

> volume #2 level 0.4

> volume #2 level 0.38

> select clear

> volume #2 subdivideSurface true subdivisionLevels 1

> volume #2 subdivideSurface true subdivisionLevels 2

No atoms selected for zoning  

[Repeated 6 time(s)]

> volume #2 level 0.4

> volume #2 level 0.38

> save "E:/Figures/A3G_dimeric interface.cxs" includeMaps true

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 887, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 616, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 242, in discovery  
if sm is None and len(value) == 0:  
TypeError: object of type 'SurfaceUpdaters' has no len()  
  
TypeError: object of type 'SurfaceUpdaters' has no len()  
  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 242, in discovery  
if sm is None and len(value) == 0:  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>  
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog  
_dlg.display(session, **kw)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display  
run(session, cmd)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\commands\run.py", line 36, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save  
Command(session, registry=registry).run(provider_cmd_text, log=log)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2856, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 89, in provider_save  
saver_info.save(session, path, **provider_kw)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save  
return cxs_save(session, path, **kw)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 887, in save  
session.save(output, version=version, include_maps=include_maps)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 616, in save  
mgr.discovery(self._state_containers)  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 242, in discovery  
if sm is None and len(value) == 0:  
TypeError: object of type 'SurfaceUpdaters' has no len()  
  
TypeError: object of type 'SurfaceUpdaters' has no len()  
  
File "C:\Program Files\ChimeraX 1.3.dev202109172329\bin\lib\site-
packages\chimerax\core\session.py", line 242, in discovery  
if sm is None and len(value) == 0:  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 471.68
OpenGL renderer: NVIDIA GeForce RTX 2060 SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: System manufacturer
Model: System Product Name
OS: Microsoft Windows 10 Home (Build 19042)
Memory: 34,261,569,536
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i9-9900K CPU @ 3.60GHz
OSLanguage: en-US
Locale: ('zh_TW', 'cp950')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.5.30
    cftime: 1.5.0
    chardet: 4.0.0
    ChimeraX-AddCharge: 1.1.4
    ChimeraX-AddH: 2.1.10
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.2
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.29.1
    ChimeraX-AtomicLibrary: 4.1.4
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.1
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3.dev202109172329
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.1
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.1
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.1
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.1
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2
    ChimeraX-ModelPanel: 1.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.1
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.10.0
    Cython: 0.29.24
    decorator: 5.1.0
    distlib: 0.3.2
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.4.0
    html2text: 2020.1.16
    idna: 2.10
    ihm: 0.20
    imagecodecs: 2021.4.28
    imagesize: 1.2.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.8.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.7.3
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.0
    ParmEd: 3.2.0
    parso: 0.8.2
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.20
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 2.4.7
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.1
    pytz: 2021.1
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.1
    RandomWords: 0.3.0
    requests: 2.25.1
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.1.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.0
    urllib3: 1.26.6
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by Eric Pettersen, 4 years ago

Component:	Unassigned → Sessions
Owner:	set to Greg Couch
Platform:	→ all
Project:	→ ChimeraX
Status:	new → assigned
Summary:	ChimeraX bug report submission → Session code trying to take len() of 'SurfaceUpdaters'

comment:2 by Eric Pettersen, 4 years ago

Resolution:	→ duplicate
Status:	assigned → closed

Hi Yen-Li,

Thanks for reporting this problem. It was fixed 4 days ago, so if you get the latest daily build you won't run into it anymore.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

in reply to: 3 ; follow-up: 3 comment:3 by Yen-Li.Li@…, 4 years ago

Sounds great. Thanks Eric.

Yen-Li

________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Monday, September 27, 2021 10:23 AM
Cc: Couch, Gregory <gregc@cgl.ucsf.edu>; Li, Yen-Li <Yen-Li.Li@ucsf.edu>
Subject: Re: [ChimeraX] #5292: Session code trying to take len() of 'SurfaceUpdaters'

#5292: Session code trying to take len() of 'SurfaceUpdaters'
----------------------------------+------------------------
          Reporter:  yen-li.li@…  |      Owner:  Greg Couch
              Type:  defect       |     Status:  closed
          Priority:  normal       |  Milestone:
         Component:  Sessions     |    Version:
        Resolution:  duplicate    |   Keywords:
        Blocked By:               |   Blocking:
Notify when closed:               |   Platform:  all
           Project:  ChimeraX     |
----------------------------------+------------------------
Changes (by Eric Pettersen):

 * status:  assigned => closed
 * resolution:   => duplicate


Comment:

 Hi Yen-Li,
         Thanks for reporting this problem.  It was fixed 4 days ago, so if
 you get the latest daily build you won't run into it anymore.

 --Eric

         Eric Pettersen
         UCSF Computer Graphics Lab

--
Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/5292#comment:2>
ChimeraX <https://www.rbvi.ucsf.edu/chimerax/>
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