![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#4980 closed defect (can't reproduce)
Crash with trashed stack
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.2.5 (2021-05-24 04:13:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x000000010f0b5e00 (most recent call first):
File "/private/var/folders/1v/572lwld12x974z9ml55fhsb00000gn/T/AppTranslocation/2841DAC0-038E-491F-B5FC-6B181487B409/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/chimerax/ui/gui.py", line 293 in event_loop
File "/private/var/folders/1v/572lwld12x974z9ml55fhsb00000gn/T/AppTranslocation/2841DAC0-038E-491F-B5FC-6B181487B409/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 866 in init
File "/private/var/folders/1v/572lwld12x974z9ml55fhsb00000gn/T/AppTranslocation/2841DAC0-038E-491F-B5FC-6B181487B409/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/site-packages/ChimeraX_main.py", line 1015 in
File "/private/var/folders/1v/572lwld12x974z9ml55fhsb00000gn/T/AppTranslocation/2841DAC0-038E-491F-B5FC-6B181487B409/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 87 in _run_code
File "/private/var/folders/1v/572lwld12x974z9ml55fhsb00000gn/T/AppTranslocation/2841DAC0-038E-491F-B5FC-6B181487B409/d/ChimeraX-1.2.5.app/Contents/Library/Frameworks/Python.framework/Versions/3.8/lib/python3.8/runpy.py", line 194 in _run_module_as_main
Process: ChimeraX [45697]
Path: /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.2.5 (1.2.5.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [45697]
User ID: 501
Date/Time: 2021-07-29 17:12:27.042 +0200
OS Version: macOS 11.2.3 (20D91)
Report Version: 12
Bridge OS Version: 5.2 (18P4347)
Anonymous UUID: DE19E87C-4F78-6137-4FBB-06072EFFB9C7
Sleep/Wake UUID: 26AD17E1-B89A-444E-8DCD-59B6E4ACA83C
Time Awake Since Boot: 15000 seconds
Time Since Wake: 7600 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x00000001209349e0
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x1209349e0:
VM_ALLOCATE 1208f2000-1208fa000 [ 32K] r--/r-- SM=ALI
--> mapped file 1208fa000-120a69000 [ 1468K] r-x/rwx SM=COW Object_id=ba60f475
mapped file 120a69000-120a81000 [ 96K] rw-/rwx SM=COW Object_id=b6d36f75
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x00007fff20579462 0 + 140733735998562
1 ??? 0x00007fff20489ba3 0 + 140733735017379
2 ??? 0x00007fff205ebd7d 0 + 140733736467837
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x00007fff2069ec3d 0 + 140733737200701
5 ??? 0x00007fff2069e436 0 + 140733737198646
6 ??? 0x00007fff2069d6ce 0 + 140733737195214
7 ??? 0x00007fff28925630 0 + 140733874066992
8 ??? 0x00007fff2892542c 0 + 140733874066476
9 ??? 0x00007fff2892514f 0 + 140733874065743
10 ??? 0x00007fff22ebd9b1 0 + 140733779270065
11 ??? 0x00007fff22ebc177 0 + 140733779263863
12 ??? 0x00007fff22eae68a 0 + 140733779207818
13 ??? 0x000000012093362f 0 + 4841485871
14 ??? 0x000000010dd8facf 0 + 4527291087
15 ??? 0x000000010dd94042 0 + 4527308866
16 ??? 0x000000010e518702 0 + 4535191298
17 ??? 0x00000001026fa0c2 0 + 4335837378
18 ??? 0x00000001026f9a85 0 + 4335835781
19 ??? 0x00000001027c8665 0 + 4336682597
20 ??? 0x00000001027c546e 0 + 4336669806
21 ??? 0x00000001026fa3d0 0 + 4335838160
22 ??? 0x00000001026fca9a 0 + 4335848090
23 ??? 0x00000001027c860c 0 + 4336682508
24 ??? 0x00000001027c546e 0 + 4336669806
25 ??? 0x00000001027c9454 0 + 4336686164
26 ??? 0x00000001026fa56e 0 + 4335838574
27 ??? 0x00000001027c860c 0 + 4336682508
28 ??? 0x00000001027c5505 0 + 4336669957
29 ??? 0x00000001027c9454 0 + 4336686164
30 ??? 0x00000001027bef44 0 + 4336643908
31 ??? 0x00000001027bc332 0 + 4336632626
32 ??? 0x00000001027365ff 0 + 4336084479
33 ??? 0x00000001027c860c 0 + 4336682508
34 ??? 0x00000001027c5505 0 + 4336669957
35 ??? 0x00000001027c9454 0 + 4336686164
36 ??? 0x00000001026fa56e 0 + 4335838574
37 ??? 0x00000001027c860c 0 + 4336682508
38 ??? 0x00000001027c5505 0 + 4336669957
39 ??? 0x00000001027c9454 0 + 4336686164
40 ??? 0x00000001026fa56e 0 + 4335838574
41 ??? 0x00000001026f9dad 0 + 4335836589
42 ??? 0x000000010282beb3 0 + 4337090227
43 ??? 0x000000010282b585 0 + 4337087877
44 ??? 0x000000010282bbdf 0 + 4337089503
45 ??? 0x000000010282baeb 0 + 4337089259
46 ??? 0x00000001026cbdc8 0 + 4335648200
47 ??? 0x00007fff205c2621 0 + 140733736298017
Thread 1:
0 ??? 0x00007fff205758e2 0 + 140733735983330
1 ??? 0x00000001037f227b 0 + 4353630843
2 ??? 0x00007fff205a7950 0 + 140733736188240
3 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 2:
0 ??? 0x00007fff205758e2 0 + 140733735983330
1 ??? 0x00000001037f227b 0 + 4353630843
2 ??? 0x00007fff205a7950 0 + 140733736188240
3 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 3:
0 ??? 0x00007fff205758e2 0 + 140733735983330
1 ??? 0x00000001037f227b 0 + 4353630843
2 ??? 0x00007fff205a7950 0 + 140733736188240
3 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 4:: ThreadPoolServiceThread
0 ??? 0x00007fff2057bdde 0 + 140733736009182
1 ??? 0x00000001161b1cc7 0 + 4665842887
2 ??? 0x000000011613a62b 0 + 4665353771
3 ??? 0x00000001160fe7cb 0 + 4665108427
4 ??? 0x0000000116145a94 0 + 4665399956
5 ??? 0x0000000116159a7d 0 + 4665481853
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 5:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x000000011614f778 0 + 4665440120
4 ??? 0x0000000116150150 0 + 4665442640
5 ??? 0x000000011614fc44 0 + 4665441348
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 6:: Chrome_IOThread
0 ??? 0x00007fff2057bdde 0 + 140733736009182
1 ??? 0x00000001161b1cc7 0 + 4665842887
2 ??? 0x000000011613a62b 0 + 4665353771
3 ??? 0x00000001160fe7cb 0 + 4665108427
4 ??? 0x000000011a07ef06 0 + 4731694854
5 ??? 0x0000000116159a7d 0 + 4665481853
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 7:: NetworkConfigWatcher
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 8:: CompositorTileWorker1
0 ??? 0x00007fff205758e2 0 + 140733735983330
1 ??? 0x000000011619ee18 0 + 4665765400
2 ??? 0x00000001174565f8 0 + 4685391352
3 ??? 0x00000001161a2e07 0 + 4665781767
4 ??? 0x00007fff205a7950 0 + 140733736188240
5 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 9:: Chrome_InProcGpuThread
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001160cf20f 0 + 4664914447
4 ??? 0x000000011613a62b 0 + 4665353771
5 ??? 0x00000001160fe7cb 0 + 4665108427
6 ??? 0x0000000116159a7d 0 + 4665481853
7 ??? 0x00000001161a2e07 0 + 4665781767
8 ??? 0x00007fff205a7950 0 + 140733736188240
9 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 10:: Chrome_ChildIOThread
0 ??? 0x00007fff2057bdde 0 + 140733736009182
1 ??? 0x00000001161b1cc7 0 + 4665842887
2 ??? 0x000000011613a62b 0 + 4665353771
3 ??? 0x00000001160fe7cb 0 + 4665108427
4 ??? 0x0000000116159a7d 0 + 4665481853
5 ??? 0x00000001161a2e07 0 + 4665781767
6 ??? 0x00007fff205a7950 0 + 140733736188240
7 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 11:: VizCompositorThread
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x000000011614f76a 0 + 4665440106
5 ??? 0x0000000116150150 0 + 4665442640
6 ??? 0x000000011614fd34 0 + 4665441588
7 ??? 0x00000001161a2e07 0 + 4665781767
8 ??? 0x00007fff205a7950 0 + 140733736188240
9 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 14:: NetworkConfigWatcher
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 15:: MemoryInfra
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 16:: NetworkConfigWatcher
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x00000001160cf1db 0 + 4664914395
5 ??? 0x000000011613a62b 0 + 4665353771
6 ??? 0x00000001160fe7cb 0 + 4665108427
7 ??? 0x0000000116159a7d 0 + 4665481853
8 ??? 0x00000001161a2e07 0 + 4665781767
9 ??? 0x00007fff205a7950 0 + 140733736188240
10 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x000000011614f76a 0 + 4665440106
5 ??? 0x000000011614fe3d 0 + 4665441853
6 ??? 0x000000011614fc74 0 + 4665441396
7 ??? 0x00000001161a2e07 0 + 4665781767
8 ??? 0x00007fff205a7950 0 + 140733736188240
9 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 18:: com.apple.NSEventThread
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00007fff2069fbf7 0 + 140733737204727
3 ??? 0x00007fff2069e2ca 0 + 140733737198282
4 ??? 0x00007fff2069d6ce 0 + 140733737195214
5 ??? 0x00007fff230437c6 0 + 140733780867014
6 ??? 0x00007fff205a7950 0 + 140733736188240
7 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 19:: ThreadPoolForegroundWorker
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x000000011614f778 0 + 4665440120
4 ??? 0x0000000116150150 0 + 4665442640
5 ??? 0x000000011614fcd4 0 + 4665441492
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 20:: ThreadPoolForegroundWorker
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x000000011614f778 0 + 4665440120
4 ??? 0x0000000116150150 0 + 4665442640
5 ??? 0x000000011614fcd4 0 + 4665441492
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 21:: ThreadPoolForegroundWorker
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x000000011614f778 0 + 4665440120
4 ??? 0x0000000116150150 0 + 4665442640
5 ??? 0x000000011614fcd4 0 + 4665441492
6 ??? 0x00000001161a2e07 0 + 4665781767
7 ??? 0x00007fff205a7950 0 + 140733736188240
8 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 22:: ThreadPoolSingleThreadSharedForeground2
0 ??? 0x00007fff20572e7e 0 + 140733735972478
1 ??? 0x00007fff205731f0 0 + 140733735973360
2 ??? 0x00000001161a7492 0 + 4665799826
3 ??? 0x00000001161a72cf 0 + 4665799375
4 ??? 0x000000011614f76a 0 + 4665440106
5 ??? 0x0000000116150150 0 + 4665442640
6 ??? 0x000000011614fd04 0 + 4665441540
7 ??? 0x00000001161a2e07 0 + 4665781767
8 ??? 0x00007fff205a7950 0 + 140733736188240
9 ??? 0x00007fff205a347b 0 + 140733736170619
Thread 23:
0 ??? 0x00007fff205a3458 0 + 140733736170584
Thread 24:
0 ??? 0x00007fff205a3458 0 + 140733736170584
Thread 25:
0 ??? 0x00007fff205a3458 0 + 140733736170584
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010f0b5e00 rcx: 0x00007fb45b955a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000a rbp: 0x00007fb45b955a80 rsp: 0x00007fb45b955a58
r8: 0x00007fb45b955f48 r9: 0x0f686bbc50d966d1 r10: 0x000000010f0b5e00 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00006000006b0be0 r14: 0x000000000000000a r15: 0x0000000000000016
rip: 0x00007fff20579462 rfl: 0x0000000000000246 cr2: 0x0000000105f64000
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream not available.
Thread 0 last branch register state not available.
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.2.5.app/Contents/MacOS/ChimeraX
0x10efde000 - 0x10f079fff dyld (832.7.3) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 13572
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=848K resident=0K(0%) swapped_out_or_unallocated=848K(100%)
Writable regions: Total=985.2M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=985.2M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 128K 1
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 320K 21
CoreAnimation 92K 14
CoreGraphics 12K 2
CoreUI image data 3932K 29
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 307.7M 429
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 100K 25
Stack 155.7M 26
Stack Guard 56.0M 1
VM_ALLOCATE 97.5M 84
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 224K 2
__DATA_CONST 32K 1
__LINKEDIT 240K 2
__TEXT 624K 1
dylib 2088K 23
dylib (reserved) 60K 4 reserved VM address space (unallocated)
mapped file 751.3M 393
shared memory 3680K 25
=========== ======= =======
TOTAL 1.8G 1110
TOTAL, minus reserved VM space 1.4G 1110
System Profile:
Network Service: Wi-Fi, AirPort, en0
bridge_os_version: Bridge OS 5.2 (18P4347)
Boot Volume File System Type: apfs
bridge_model: iBridge2,10
Memory Module: BANK 0/ChannelA-DIMM0, 4 GB, LPDDR3, 2133 MHz, Micron, -
Memory Module: BANK 2/ChannelB-DIMM0, 4 GB, LPDDR3, 2133 MHz, Micron, -
USB Device: USB 3.1 Bus
USB Device: Apple T2 Bus
USB Device: Touch Bar Backlight
USB Device: Touch Bar Display
USB Device: Apple Internal Keyboard / Trackpad
USB Device: Headset
USB Device: Ambient Light Sensor
USB Device: FaceTime HD Camera (Built-in)
USB Device: Apple T2 Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 63.5
Model: MacBookPro15,4, BootROM 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0), 4 processors, Quad-Core Intel Core i5, 1.4 GHz, 8 GB, SMC
Graphics: kHW_IntelIrisGraphics645Item, Intel Iris Plus Graphics 645, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme, wl0: Dec 9 2020 01:09:28 version 16.20.293.6.3.6.96 FWID 01-72ab9dcc
Bluetooth: Version 8.0.3d9, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.2.5 (2021-05-24)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.1.12
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,4
Processor Name: Quad-Core Intel Core i5
Processor Speed: 1.4 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 1554.80.3.0.0 (iBridge: 18.16.14347.0.0,0)
Software:
System Software Overview:
System Version: macOS 11.2.3 (20D91)
Kernel Version: Darwin 20.3.0
Time since boot: 1:11
Graphics/Displays:
Intel Iris Plus Graphics 645:
Chipset Model: Intel Iris Plus Graphics 645
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea6
Revision ID: 0x0001
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.12.5
cftime: 1.5.0
chardet: 3.0.4
ChimeraX-AddCharge: 1.0.1
ChimeraX-AddH: 2.1.6
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.13.2
ChimeraX-AtomicLibrary: 3.1.3
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.5.2
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.1
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.2.1
ChimeraX-CommandLine: 1.1.4
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.2.5
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.1.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.1
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.3
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.1
ChimeraX-Help: 1.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.1
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.0.2
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.2.1
ChimeraX-MDcrds: 2.2
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.3
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.0.1
ChimeraX-ModelPanel: 1.0.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.1
ChimeraX-OpenCommand: 1.5
ChimeraX-PDB: 2.4.1
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.1
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.0.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.4
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.3.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.7.6
ChimeraX-uniprot: 2.1
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.21
decorator: 5.0.9
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.17
imagecodecs: 2020.5.30
imagesize: 1.2.0
ipykernel: 5.3.4
ipython: 7.18.1
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.7
jupyter-core: 4.7.1
kiwisolver: 1.3.1
line-profiler: 2.1.2
lxml: 4.6.2
lz4: 3.1.0
MarkupSafe: 2.0.1
matplotlib: 3.3.2
matplotlib-inline: 0.1.2
msgpack: 1.0.0
netCDF4: 1.5.4
networkx: 2.5
numexpr: 2.7.3
numpy: 1.19.2
numpydoc: 1.1.0
openvr: 1.14.1501
packaging: 20.9
ParmEd: 3.2.0
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.2.0
pip: 21.0.1
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.18
psutil: 5.7.2
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.7.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.1
pytz: 2021.1
pyzmq: 22.0.3
qtconsole: 4.7.7
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.5.2
setuptools: 50.3.2
sfftk-rw: 0.6.7.dev1
six: 1.15.0
snowballstemmer: 2.1.0
sortedcontainers: 2.2.2
Sphinx: 3.2.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.9.3
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.0.5
urllib3: 1.25.11
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.36.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash with trashed stack |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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