Opened 4 years ago
Closed 4 years ago
#4932 closed defect (duplicate)
MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ChainMenuButton has been deleted
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Structure Comparison | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Windows-10-10.0.19041 ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC) Description (Describe the actions that caused this problem to occur here) Log: > ui mousemode right "play coordinates" > ui mousemode right select > ui mousemode right translate > ui tool show Matchmaker Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 50, in <lambda> data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute())) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted Error processing trigger "setting changed": RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 50, in <lambda> data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute())) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted Error processing trigger "setting changed": RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 50, in <lambda> data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute())) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted Error processing trigger "setting changed": RuntimeError: wrapped C/C++ object of type NZDoubleSpinBox has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 376, in set_value self._float_widget.setSpecialValueText("") See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 50, in <lambda> data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute())) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 272, in set_value self.__button_group.button(self.values.index(value)).setChecked(True) AttributeError: 'NoneType' object has no attribute 'setChecked' Error processing trigger "setting changed": AttributeError: 'NoneType' object has no attribute 'setChecked' File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\options\options.py", line 272, in set_value self.__button_group.button(self.values.index(value)).setChecked(True) See log for complete Python traceback. > matchmaker #1/C to #2/C pairing ss cutoffDistance 1.0 showAlignment true Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 1 Matchmaker 6xm0.pdb, chain C (#2) with 6xr8.1.pdb, chain C (#1), sequence alignment score = 5049.4 Alignment identifier is 1 Showing conservation header ("seq_conservation" residue attribute) for alignment 1 Hiding conservation header for alignment 1 Chains used in RMSD evaluation for alignment 1: 6xr8.1.pdb #1/C, 6xm0.pdb #2/C Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1 RMSD between 221 pruned atom pairs is 0.623 angstroms; (across all 1011 pairs: 4.589) Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. [many of these deleted] Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. Traceback (most recent call last): File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted Error processing trigger "changes": RuntimeError: wrapped C/C++ object of type ChainMenuButton has been deleted File "C:\Program Files\ChimeraX 1.1\bin\lib\site- packages\chimerax\ui\widgets\item_chooser.py", line 305, in _items_change if not hasattr(self, '_recursion'): See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 466.77 OpenGL renderer: NVIDIA GeForce RTX 2060/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Micro-Star International Co., Ltd. Model: MS-7C95 OS: Microsoft Windows 10 Home (Build 19042) Memory: 17,126,764,544 MaxProcessMemory: 137,438,953,344 CPU: 12 AMD Ryzen 5 3600 6-Core Processor " PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.9 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 chardet: 3.0.4 ChimeraX-AddH: 2.1.3 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.6.1 ChimeraX-AtomSearch: 2.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.0.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.0 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.0 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.1 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.0 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.0 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.2.1 ChimeraX-PDB: 2.1 ChimeraX-PDBBio: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.0 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.0.4 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.2.3 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.20 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 gdcm: 2.8.8 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.16 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.0 ipython: 7.15.0 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.3 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.1 MarkupSafe: 1.1.1 matplotlib: 3.2.1 msgpack: 1.0.0 netifaces: 0.10.9 networkx: 2.4 numexpr: 2.7.1 numpy: 1.18.5+mkl numpydoc: 1.0.0 openvr: 1.12.501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.1.2 pip: 20.2.2 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.0 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.6.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.12.3 PyQt5-sip: 4.19.19 PyQtWebEngine-commercial: 5.12.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.4 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.4.1 setuptools: 49.4.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.1.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.6.3 tinyarray: 1.2.2 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1
Change History (2)
comment:1 by , 4 years ago
Component: | Unassigned → Structure Comparison |
---|---|
Description: | modified (diff) |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → MatchMaker specific chain-chain pairing: wrapped C/C++ object of type ChainMenuButton has been deleted |
comment:2 by , 4 years ago
Resolution: | → duplicate |
---|---|
Status: | accepted → closed |
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