![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#4486 closed defect (nonchimerax)
Save session: No space left on device
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19041
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "G:\figure S5\REGN0933.cxs" format session
Log from Fri Apr 9 14:03:17 2021UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "G:\figure S5\CC12.3.cxs" format session
Log from Fri Apr 9 13:56:07 2021UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "G:/figure S5/B38.cxs"
Log from Fri Apr 9 11:06:23 2021UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "G:/figure S5/2 up.cxs"
Log from Wed Apr 7 12:02:20 2021UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
> open "C:/Users/yangz/Desktop/1113 cryoEM/2 up.cxs"
Log from Mon Apr 5 15:33:31 2021 Startup Messages
---
note | available bundle cache has not been initialized yet
Updating list of available bundles failed: [Errno 11001] getaddrinfo failed
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:/Users/yangz/Desktop/113_2up_0304_chain_LINK1_secondary6zb4_csh-
> coot-0_real_space_refined.pdb
Summary of feedback from opening
C:/Users/yangz/Desktop/113_2up_0304_chain_LINK1_secondary6zb4_csh-
coot-0_real_space_refined.pdb
---
warnings | Ignored bad PDB record found on line 20
Ignored bad PDB record found on line 21
DEVIATIONS FROM IDEAL VALUES.
Ignored bad PDB record found on line 22
BOND : 0.006 0.092 28956
Ignored bad PDB record found on line 23
ANGLE : 1.812 65.711 39564
Ignored bad PDB record found on line 24
CHIRALITY : 0.214 4.659 4678
40 messages similar to the above omitted
Chain information for 113_2up_0304_chain_LINK1_secondary6zb4_csh-
coot-0_real_space_refined.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
V | No description available
> show surfaces
> hide atoms
> hide cartoons
> lighting soft
> color light gray
> select /V
894 atoms, 916 bonds, 116 residues, 1 model selected
> color (#!1 & sel) orange
> select /D
909 atoms, 931 bonds, 118 residues, 1 model selected
> color (#!1 & sel) orange
> select sequence 333-530
Nothing selected
> select /A
8778 atoms, 9015 bonds, 8 pseudobonds, 1100 residues, 2 models selected
> select sequence 333-530
Nothing selected
> select /B
8821 atoms, 9059 bonds, 10 pseudobonds, 1104 residues, 2 models selected
> select sequence 333-530
Nothing selected
> select sequence "B: 333-530"
Nothing selected
> select clear
> nucleotides tube/slab shape muffler
> set bgColor white
> select /V
894 atoms, 916 bonds, 116 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark orange
> select /D
909 atoms, 931 bonds, 118 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark orange
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> ui tool show "Color Actions"
> color sel slate blue
> color sel medium slate blue
> color sel slate blue
> color sel medium slate blue
> select ~sel
26634 atoms, 27345 bonds, 26 pseudobonds, 3341 residues, 2 models selected
> hide sel surfaces
> show sel surfaces
> select clear
> color (#!1 & sel) magenta
> ui tool show "Color Actions"
> color sel medium slate blue
> ui tool show "Show Sequence Viewer"
> sequence chain /C
Alignment identifier is 1/C
> color (#!1 & sel) hot pink
> ui tool show "Color Actions"
> color sel orchid
> color sel hot pink
> color sel deep pink
> color sel hot pink
> color sel hot pink
> color (#!1 & sel) light gray
> ui tool show "Show Sequence Viewer"
> sequence chain /B
Alignment identifier is 1/B
> ui tool show "Color Actions"
> color sel wheat
> color sel wheat
> select clear
> rotate y, 90
Unknown command: rotate y, 90
> turn y 90
> turn y -90
> turn x 90
> save "C:/Users/yangz/Desktop/2up-top view.gif" width 1280 height 557
> supersample 3
> turn x -90
> save "C:/Users/yangz/Desktop/2up-side view.gif" width 1280 height 557
> supersample 3
> save "C:/Users/yangz/Desktop/2up-side view.tif" width 1280 height 557
> supersample 3
> turn x 90
> save "C:/Users/yangz/Desktop/2up-top view.tif" width 1280 height 557
> supersample 3
> save "C:/Users/yangz/Desktop/2 up.cxs"
opened ChimeraX session
> ui tool show "Show Sequence Viewer"
> sequence chain /C
Alignment identifier is 1/C
> ui tool show "Color Actions"
> color sel medium slate blue
> color sel medium slate blue
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> color sel hot pink
> color sel hot pink
> select clear
> turn x 90
> turn x -90
> save "C:/Users/yangz/Desktop/1113 cryoEM/2 up.cxs"
> save "C:/Users/yangz/Desktop/1113 cryoEM/2up-side view.tif" width 701 height
> 557 supersample 3
> turn x 90
> save "C:/Users/yangz/Desktop/1113 cryoEM/2up-top view.tif" width 701 height
> 557 supersample 3
> turn x -90
> save "C:/Users/yangz/Desktop/1113 cryoEM/2up-side view.tif" width 1259
> height 1000 supersample 3
> turn x 90
> save "C:/Users/yangz/Desktop/1113 cryoEM/2up-top view.tif" width 701 height
> 557 supersample 3
> save "C:/Users/yangz/Desktop/1113 cryoEM/2 up.cxs"
opened ChimeraX session
> open "G:/figure S5/7bz5-B38.pdb"
7bz5-B38.pdb title:
Structure of covid-19 virus spike receptor-binding domain complexed with A
neutralizing antibody [more info...]
Chain information for 7bz5-B38.pdb #2
---
Chain | Description
A | spike protein S1
H | heavy chain of B38
L | light chain of B38
Non-standard residues in 7bz5-B38.pdb #2
---
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose
> align #1/A:351-500@ca toAtoms #2/A:351-500@ca
RMSD between 150 atom pairs is 1.338 angstroms
> select clear
> hide #!1 models
> ui tool show "Show Sequence Viewer"
> select #2/A
1675 atoms, 1596 bonds, 2 pseudobonds, 321 residues, 2 models selected
> hide sel cartoons
> hide sel atoms
> show #!1 models
> select intersect #2/H
Nothing selected
> select #2/H
1827 atoms, 1657 bonds, 427 residues, 1 model selected
> ui tool show "Color Actions"
> color sel green
> color sel spring green
> select clear
> color lime
> undo
> select #2/H
1827 atoms, 1657 bonds, 427 residues, 1 model selected
> ui tool show "Color Actions"
> color sel green
> select #2/L
1843 atoms, 1698 bonds, 400 residues, 1 model selected
> color sel green
> select clear
> save "G:/figure S5/B38.cxs"
opened ChimeraX session
> open "G:/figure S5/7jmo-COVA2-04.pdb"
7jmo-COVA2-04.pdb title:
Crystal structure of sars-cov-2 receptor binding domain In complex with
neutralizing antibody COVA2-04 [more info...]
Chain information for 7jmo-COVA2-04.pdb #3
---
Chain | Description
A | spike protein S1
H | COVA2-04 heavy chain
L | COVA2-04 light chain
Non-standard residues in 7jmo-COVA2-04.pdb #3
---
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)
> align #3/A:351-500@ca toAtoms #1/A:351-500@ca
RMSD between 150 atom pairs is 1.370 angstroms
> hide #!2 models
> select #3/A
1581 atoms, 1591 bonds, 232 residues, 1 model selected
> hide #!1 models
> hide sel cartoons
> hide sel atoms
> select #2/H
1827 atoms, 1657 bonds, 427 residues, 1 model selected
> select intersect #2/H
1827 atoms, 1657 bonds, 427 residues, 1 model selected
> show #!2 models
> hide #!2 models
> show #!2 models
> select #3/H
1647 atoms, 1638 bonds, 2 pseudobonds, 261 residues, 2 models selected
> hide #!2 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!3 models
> show #!3 models
> hide #!2 models
> color (#!3 & sel) medium blue
> show #!1 models
> ui tool show "Color Actions"
> color sel slate blue
> color sel slate blue
> color sel slate blue
> select #3/L
1676 atoms, 1672 bonds, 254 residues, 1 model selected
> ui tool show "Color Actions"
> color sel slate blue
> select clear
> save "G:/figure S5/COVA2-04.tif" width 1920 height 1194 supersample 3
> save "G:/figure S5/COVA2-04.cxs"
> open "G:/figure S5/7k8m-C102.pdb"
7k8m-C102.pdb title:
Structure of the sars-cov-2 receptor binding domain In complex with the human
neutralizing antibody fab fragment, C102 [more info...]
Chain information for 7k8m-C102.pdb #4
---
Chain | Description
A | C102 fab heavy chain
B | C102 fab light chain
E | spike glycoprotein
Non-standard residues in 7k8m-C102.pdb #4
---
NAG — 2-acetamido-2-deoxy-β-D-glucopyranose (N-acetyl-β-D-glucosamine;
2-acetamido-2-deoxy-β-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-acetyl-D-glucosamine)
> hide #!1 models
> hide #!3 models
> show #!1 models
> align #4/E:351-500@ca toAtoms #1/A:351-500@ca
RMSD between 150 atom pairs is 1.271 angstroms
> hide #!1 models
> select #4/E
1484 atoms, 1529 bonds, 185 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> show #!1 models
> color (#!4 & sel) light gray
> select clear
> ui tool show "Color Actions"
> color alice blue
> undo
> select intersect #4/A
Nothing selected
> select intersect #4/A
Nothing selected
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> ui tool show "Color Actions"
> color sel alice blue
> select clear
> select clear
> select #4/B
1650 atoms, 1687 bonds, 215 residues, 1 model selected
> ui tool show "Color Actions"
> color sel alice blue
> select clear
> select intersect #4/A
Nothing selected
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> ui tool show "Color Actions"
> color sel alice blue
> color sel alice blue
> color sel alice blue
> color sel azure
> color sel alice blue
> color sel alice blue
> color sel alice blue
> color sel alice blue
> color sel alice blue
> select clear
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> select #4/B
1650 atoms, 1687 bonds, 215 residues, 1 model selected
> ui tool show "Color Actions"
> color sel azure
> color sel azure
> color sel azure
> color sel azure
> select clear
> select down
Nothing selected
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> ui tool show "Color Actions"
> color sel azure
> color sel azure
> color sel azure
> color sel azure
> color sel azure
> color sel azure
> color sel azure
> select clear
> select intersect #4/A
Nothing selected
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> ui tool show "Color Actions"
> color sel ghost white
> color sel ghost white
> color sel ghost white
> select clear
> ui tool show "Color Actions"
> color ghost white
> color ghost white
> color ghost white
> undo
> undo
> undo
> undo
> select #4/A
1603 atoms, 1644 bonds, 2 pseudobonds, 213 residues, 2 models selected
> ui tool show "Color Actions"
> color sel azure
> select #4/B
1650 atoms, 1687 bonds, 215 residues, 1 model selected
> ui tool show "Color Actions"
> color sel azure
> select clear
> save "G:/figure S5/C102.cxs"
> save "G:/figure S5/C102.tif" width 1920 height 1194 supersample 3
> open "G:/figure S5/C105.pdb"
Chain information for C105.pdb #5
---
Chain | Description
C | No description available
H | No description available
L | No description available
> hide #!4 models
> align #5/C:351-500@ca toAtoms #1/A:351-500@ca
RMSD between 150 atom pairs is 1.560 angstroms
> select intersect #1/V
Nothing selected
> hide #!1 models
> select #5/C
1547 atoms, 1589 bonds, 196 residues, 1 model selected
> hide sel cartoons
> select #1/A
8778 atoms, 9015 bonds, 8 pseudobonds, 1100 residues, 2 models selected
> select #5/H
890 atoms, 911 bonds, 116 residues, 1 model selected
> color sel orange red
> select #5/L
810 atoms, 827 bonds, 111 residues, 1 model selected
> color sel orange red
> show #!1 models
> select clear
> save "G:/figure S5/C105.tif" width 1920 height 1194 supersample 3
> save "G:/figure S5/C105.cxs"
> open "G:/figure S5/CB6.pdb"
Chain information for CB6.pdb #6
---
Chain | Description
A | No description available
H | No description available
L | No description available
> hide #5 models
> align #6/A:351-500@ca toAtoms #1/A:351-500@ca
RMSD between 150 atom pairs is 1.311 angstroms
> select #6/A
1557 atoms, 1602 bonds, 196 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #6/L
1654 atoms, 1690 bonds, 215 residues, 1 model selected
> color sel yellow
> ui tool show "Color Actions"
> select #6/H
1624 atoms, 1662 bonds, 218 residues, 1 model selected
> color sel yellow
> select clear
> save "G:/figure S5/CB6.cxs"
> save "G:/figure S5/CB6.tif" width 1920 height 1194 supersample 3
> open "G:/figure S5/CC12.1.pdb"
Chain information for CC12.1.pdb #7
---
Chain | Description
A | No description available
H | No description available
L | No description available
> hide #6 models
> align #7/A:351-500@ca toAtoms #1/A:351-500@ca
Unequal number of atoms to pair, 148 and 150
> align #7/A:351-500@ca toAtoms #1/A:351-500@ca
Unequal number of atoms to pair, 148 and 150
> select intersect #7/A
Nothing selected
> select #1/B
8821 atoms, 9059 bonds, 10 pseudobonds, 1104 residues, 2 models selected
> select #7/A
1551 atoms, 1595 bonds, 194 residues, 1 model selected
> align #7/A:351-500@ca toAtoms #1/A:351-500@ca
Unequal number of atoms to pair, 148 and 150
> view sel
> undo
> ui tool show "Show Sequence Viewer"
> sequence chain #7/A
Alignment identifier is 7/A
> align #7/A:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 158 and 160
> align #7/A:360-500@ca toAtoms #1/A:360-500@ca
Unequal number of atoms to pair, 139 and 141
> align #7/A:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 158 and 160
No statusbar messages will be shown due to inadequate OpenGL
> hide #!1 models
> show #!1 models
> hide #7 models
> show #7 models
> align #7/A:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 158 and 160
> align #7/A:341-520@ca toAtoms #1/A:341-520@ca
Unequal number of atoms to pair, 178 and 180
> align #7/A:341-520@ca toAtoms #1/A:341-518@ca
RMSD between 178 atom pairs is 4.179 angstroms
> select #7/A
1551 atoms, 1595 bonds, 194 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #7/H
1591 atoms, 1625 bonds, 215 residues, 1 model selected
> color sel cyan
> select #7/L
1650 atoms, 1688 bonds, 215 residues, 1 model selected
> color sel cyan
> select clear
> save "G:/figure S5/CC12.1.tif" width 1983 height 1194 supersample 3
> save "G:/figure S5/CC12.1.cxs"
> open "G:/figure S5/CC12.3.pdb"
Chain information for CC12.3.pdb #8
---
Chain | Description
X | No description available
Y | No description available
Z | No description available
> hide #7 models
> align #8/B:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 0 and 160
> align #8/Z:341-500@ca toAtoms #1/A:341-500@ca
RMSD between 160 atom pairs is 1.485 angstroms
> select #8/Z
1629 atoms, 1595 bonds, 274 residues, 1 model selected
> show sel atoms
> show sel atoms
> hide sel atoms
> hide sel cartoons
> select #8/X
1740 atoms, 1645 bonds, 348 residues, 1 model selected
> ui tool show "Color Actions"
> color sel wheat
> select #8/Y
1749 atoms, 1670 bonds, 327 residues, 1 model selected
> ui tool show "Color Actions"
> color sel wheat
> select clear
> save "G:/figure S5/CC12.3.cxs"
opened ChimeraX session
> open "G:/figure S5/REGN1093.pdb"
Chain information for REGN1093.pdb #9
---
Chain | Description
B | No description available
D | No description available
E | No description available
> hide #8 models
> align #9/B:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 0 and 160
> align #9/D:341-500@ca toAtoms #1/A:341-500@ca
Unequal number of atoms to pair, 0 and 160
> align #9/E:341-500@ca toAtoms #1/A:341-500@ca
RMSD between 160 atom pairs is 1.642 angstroms
> select #9/E
1536 atoms, 1579 bonds, 194 residues, 1 model selected
> hide sel atoms
> hide sel cartoons
> select #9/B
1603 atoms, 1643 bonds, 212 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark orange
> color sel orange
> color sel dark orange
> color sel orange
> select #9/D
1640 atoms, 1674 bonds, 214 residues, 1 model selected
> color sel orange
> select clear
> save "G:/figure S5/REGN0933.tif" width 1920 height 1194 supersample 3
> save "G:/figure S5/REGN0933.cxs"
opened ChimeraX session
> open "G:/figure S5/2019-nCoV-RBD-ACE2.pdb"
Summary of feedback from opening G:/figure S5/2019-nCoV-RBD-ACE2.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Date 2020-02-21 Time 12:20:21 CST +0800 (1582258821.87 s)
Ignored bad PDB record found on line 2
REMARK PHENIX refinement
Ignored bad PDB record found on line 4
REMARK ****************** INPUT FILES AND LABELS
******************************
Ignored bad PDB record found on line 5
REMARK Reflections:
Ignored bad PDB record found on line 6
REMARK file name :
/data/Project/LJ/shilongFanmodify/C1_1_xia2_3dii_aimless.mtz
31 messages similar to the above omitted
Chain information for 2019-nCoV-RBD-ACE2.pdb #10
---
Chain | Description
A | No description available
E | No description available
> hide #9 models
> align #10/E:341-500@ca toAtoms #1/A:341-500@ca
RMSD between 160 atom pairs is 1.299 angstroms
> open "G:/figure S5/2019-nCoV-RBD-ACE2.pdb"
Summary of feedback from opening G:/figure S5/2019-nCoV-RBD-ACE2.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK Date 2020-02-21 Time 12:20:21 CST +0800 (1582258821.87 s)
Ignored bad PDB record found on line 2
REMARK PHENIX refinement
Ignored bad PDB record found on line 4
REMARK ****************** INPUT FILES AND LABELS
******************************
Ignored bad PDB record found on line 5
REMARK Reflections:
Ignored bad PDB record found on line 6
REMARK file name :
/data/Project/LJ/shilongFanmodify/C1_1_xia2_3dii_aimless.mtz
31 messages similar to the above omitted
Chain information for 2019-nCoV-RBD-ACE2.pdb #11
---
Chain | Description
A | No description available
E | No description available
> undo
> hide #9 models
> align #11/E:341-500@ca toAtoms #1/C:341-500@ca
RMSD between 160 atom pairs is 1.242 angstroms
> select #10/E
1529 atoms, 1574 bonds, 2 pseudobonds, 193 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #11/E
1529 atoms, 1574 bonds, 2 pseudobonds, 193 residues, 2 models selected
> hide sel atoms
> hide sel cartoons
> select #10/A
4913 atoms, 5055 bonds, 601 residues, 1 model selected
> color sel magenta
> select #11/E
1529 atoms, 1574 bonds, 2 pseudobonds, 193 residues, 2 models selected
> select #11/A
4913 atoms, 5055 bonds, 601 residues, 1 model selected
> color sel magenta
> select clear
> save "G:/figure S5/ACE2-1.cxs"
> save "G:/figure S5/ACE2-1.tif" width 1920 height 1194 supersample 3
> turn y 90
> save "G:/figure S5/ACE2-1.tif" width 1920 height 1194 supersample 3
> save "G:/figure S5/ACE2-1.cxs"
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> undo
> save "G:/figure S5/ACE2-1.cxs"
> save "G:/figure S5/ACE2-1.tif" width 1920 height 1194 supersample 3
> turn y 90
> save "G:/figure S5/ACE2-2.tif" width 1920 height 1194 supersample 3
> save "G:/figure S5/ACE2-2.cxs"
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> turn y 90
> save "G:/figure S5/ACE2-1-1.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 79, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
> save "G:/figure S5/ACE2 1.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 79, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
> save "G:/figure S5/ACE2 111.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 79, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
> save "G:/figure S5/20210409ACE2.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 79, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
> save "G:/figure S5/1.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-packages\chimerax\ui\gui.py",
line 1574, in <lambda>
action.triggered.connect(lambda arg, cb = callback: cb())
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 102, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 113, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 48, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\run.py", line 31, in run
results = command.run(text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 66, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2805, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 79, in provider_save
mgr).save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 79, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 826, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\session.py", line 588, in save
fserialize(stream, data)
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\serialize.py", line 63, in msgpack_serialize
stream.write(packer.pack(obj))
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
OSError: [Errno 28] No space left on device
OSError: [Errno 28] No space left on device
File "C:\Program Files\ChimeraX 1.1\bin\lib\site-
packages\chimerax\core\safesave.py", line 129, in write
self._f.write(buf)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 456.71
OpenGL renderer: GeForce GTX 1660/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Gigabyte Technology Co., Ltd.
Model: Z390 AORUS PRO WIFI
OS: Microsoft Windows 10 专业版 (Build 19041)
Memory: 34,287,603,712
MaxProcessMemory: 137,438,953,344
CPU: 16 Intel(R) Core(TM) i9-9900KF CPU @ 3.60GHz"
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
gdcm: 2.8.8
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5+mkl
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pywin32: 228
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
WMI: 1.5.1
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Input/Output |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Save session: No space left on device |
comment:2 by , 5 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
