Opened 5 years ago
Closed 5 years ago
#3792 closed defect (duplicate)
VR meeting, AttributeError: 'NoneType' object has no attribute 'tobytes'
Reported by: | Owned by: | Tom Goddard | |
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Priority: | normal | Milestone: | |
Component: | VR | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Windows-10-10.0.18362 ChimeraX Version: 1.2.dev202010010012 (2020-10-01 00:12:24 UTC) Description Two person vr meeting with my two home vr systems. sars-pore-3 session. Showed gui on non-meeting-host and pressed markers toolbar delete icon. Log: UCSF ChimeraX version: 1.2.dev202010010012 (2020-10-01) © 2016-2020 Regents of the University of California. All rights reserved. > meeting 192.168.0.2 Log from Fri Oct 2 18:24:04 2020UCSF ChimeraX version: 1.2.dev202010010012 (2020-10-01) © 2016-2020 Regents of the University of California. All rights reserved. > open C:\cygwin64\home\goddard\ucsf\data\sars-cov-2-pore\sars-pores3.cxs > format session Log from Wed Sep 30 19:47:59 2020UCSF ChimeraX version: 1.2.dev202009300503 (2020-09-30) © 2016-2020 Regents of the University of California. All rights reserved. > open /Users/goddard/ucsf/data/sars-cov-2-pore/sars-pores2.cxs format session Log from Wed Sep 30 17:54:31 2020UCSF ChimeraX version: 1.2.dev202009300503 (2020-09-30) © 2016-2020 Regents of the University of California. All rights reserved. > open /Users/goddard/ucsf/data/sars-cov-2-pore/sars-pores.cxs format session Log from Fri Sep 18 10:47:56 2020UCSF ChimeraX version: 1.2.dev202009020044 (2020-09-02) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/goddard/ucsf/data/sars-cov-2-pore/emd_11514.map Opened emd_11514.map, grid size 96,96,96, pixel 7.02, shown at level 3.21, step 1, values float32 > volume #1 level 2.022 > open /Users/goddard/ucsf/data/sars-cov-2-pore/models/QHD43415_3.pdb Chain information for QHD43415_3.pdb #2 --- Chain | Description | No description available > rainbow #2 Drag select of 287 residues > ui mousemode right translate > ui mousemode right "translate selected models" > select clear > open /Users/goddard/ucsf/data/sars-cov-2-pore/F1.large.png Opened multi-channel map F1.large.png, 3 channels, grid size 1280,639,1, pixel 1, shown at step 1, values uint8 > volume #3.1 level 105,0 level 120,0.8 level 255,1 > volume #3.1 level 120,0.8 level 255,1 color red color red > volume #3.1 level 0.4713,0 level 255,1 > volume #3.2 level 107,0 level 121.8,0.8 level 255,1 > volume #3.2 level 107,0 level 255,1 color lime color lime > volume #3.2 level 0,0 level 255,1 > volume #3.3 level 86.99,0 level 103.8,0.8 level 255,1 > volume #3.3 level 86.99,0 level 255,1 color blue color blue > volume #3.3 level 0,0 level 255,1 > select #3 7 models selected > select clear > lighting full > save sars-pores.cxs opened ChimeraX session > close #3 > open /Users/goddard/ucsf/data/sars-cov-2-pore/F1.large.jpg Opened image F1.large.jpg > ui mousemode right "move picked models" > view matrix models #3,1,0,0,-66.333,0,1,0,-644.48,0,0,1,343.15 > view matrix models > #3,0.9918,-0.12365,0.032338,-66.333,-0.067921,-0.29559,0.9529,-644.48,-0.10826,-0.94728,-0.30156,343.15 > view matrix models > #3,0.9853,-0.044457,0.16497,-66.333,-0.15335,0.19566,0.96861,-644.48,-0.07534,-0.97966,0.18597,343.15 > view matrix models > #3,0.9611,-0.13297,0.2421,-66.333,-0.2303,0.098158,0.96816,-644.48,-0.1525,-0.98625,0.063716,343.15 > view matrix models > #3,-0.95885,-0.090898,0.26896,-66.333,0.28389,-0.29665,0.91181,-644.48,-0.0030938,0.95065,0.31025,343.15 > open /Users/goddard/ucsf/data/sars-cov-2-pore/F2.large.jpg Opened image F2.large.jpg > close #4 > open /Users/goddard/ucsf/data/sars-cov-2-pore/F2.large.jpg format photo Opened image F2.large.jpg > view matrix models #4,1,0,0,-904.05,0,1,0,61.98,0,0,1,150.79 > view matrix models #4,1,0,0,-979.47,0,1,0,123.66,0,0,1,56.087 > view matrix models > #4,-0.79402,0.52269,-0.31036,-979.47,-0.53392,-0.35559,0.76713,123.66,0.29061,0.77482,0.56142,56.087 > view matrix models > #4,-0.97197,-0.21499,-0.095174,-979.47,0.0020878,-0.41268,0.91087,123.66,-0.2351,0.88514,0.40156,56.087 > view matrix models > #4,-0.13764,0.28993,0.9471,-979.47,0.89258,-0.3782,0.24549,123.66,0.42937,0.87915,-0.20673,56.087 > view matrix models > #4,-0.23117,-0.20228,0.95165,-1051.1,0.84163,-0.53228,0.09131,-2.5657,0.48808,0.82205,0.29329,564.7 > view matrix models > #3,-0.95578,-0.11723,0.26969,-66.333,0.29382,-0.41838,0.85944,-644.48,0.012082,0.90068,0.43432,343.15 > save sars-pores2.cxs opened ChimeraX session > usage rename rename models [name] [id id] — rename a model or change its id number name: a text string id: a model id > open /Users/goddard/ucsf/data/sars-cov-2-pore/models/QHD43415_4.pdb Chain information for QHD43415_4.pdb #5 --- Chain | Description | No description available > hide #5 models > show #5 models > hide #4 models > hide #2 models > hide #3 models > show #2 models > show #3 models > hide #2 models > show #4 models > hide #4 models > hide #3 models > hide #!1 models > open /Users/goddard/ucsf/data/sars-cov-2-pore/models/QHD43415_6.pdb Chain information for QHD43415_6.pdb #6 --- Chain | Description | No description available > show #!1 models > show #2 models > hide #!1 models > ui mousemode right "move picked models" > view matrix models #5,1,0,0,46.693,0,1,0,215.51,0,0,1,83.347 > view matrix models #6,1,0,0,70.795,0,1,0,73.781,0,0,1,-79.717 > view matrix models #5,1,0,0,124.63,0,1,0,161.13,0,0,1,144.79 > view matrix models #6,1,0,0,143.28,0,1,0,22.959,0,0,1,-34.14 > show #!1 models > hide #!1 models > view matrix models #6,1,0,0,181.33,0,1,0,59.891,0,0,1,105.96 > show #!1 models > hide #2 models > hide #5-6 cartoons > show #5-6 atoms > style #5-6 sphere Changed 12595 atom styles > show #2 models > show #3 models > show #4 models > save /Users/goddard/ucsf/data/sars-cov-2-pore/sars-pores3.cxs opened ChimeraX session > vr true > lighting simple started SteamVR rendering > meeting start Meeting at DESKTOP-J8FC2Q4 or 192.168.0.2 port 52194 started SteamVR rendering VR mode delete markers Traceback (most recent call last): File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 740, in _vr_tracking_cb gu = self._gui_updates(c) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 816, in _gui_updates pchange['image'] = _encode_numpy_array(rgba) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 1073, in _encode_numpy_array data = b64encode(compress(array.tobytes(), level = 1)) AttributeError: 'NoneType' object has no attribute 'tobytes' Error processing trigger "vr update": AttributeError: 'NoneType' object has no attribute 'tobytes' File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 1073, in _encode_numpy_array data = b64encode(compress(array.tobytes(), level = 1)) See log for complete Python traceback. VR mode resize markers Traceback (most recent call last): File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\core\triggerset.py", line 130, in invoke return self._func(self._name, data) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 740, in _vr_tracking_cb gu = self._gui_updates(c) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 816, in _gui_updates pchange['image'] = _encode_numpy_array(rgba) File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 1073, in _encode_numpy_array data = b64encode(compress(array.tobytes(), level = 1)) AttributeError: 'NoneType' object has no attribute 'tobytes' Error processing trigger "vr update": AttributeError: 'NoneType' object has no attribute 'tobytes' File "C:\Program Files\ChimeraX-Oct-1-2020\bin\lib\site- packages\chimerax\meeting\meeting.py", line 1073, in _encode_numpy_array data = b64encode(compress(array.tobytes(), level = 1)) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 398.35 OpenGL renderer: GeForce GTX 1070 with Max-Q Design/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: Micro-Star International Co., Ltd. Model: GS65 Stealth Thin 8RF OS: Microsoft Windows 10 Pro (Build 18362) Memory: 34,195,668,992 MaxProcessMemory: 137,438,953,344 CPU: 12 Intel(R) Core(TM) i7-8750H CPU @ 2.20GHz OSLanguage: en-US Locale: ('en_US', 'cp1252') PyQt version: 5.15.1 Compiled Qt version: 5.15.1 Runtime Qt version: 5.15.1 Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.8.0 backcall: 0.2.0 blockdiag: 2.0.1 certifi: 2020.6.20 cftime: 1.2.1 chardet: 3.0.4 ChimeraX-AddH: 2.1.1 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.1 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.8.2 ChimeraX-AtomicLibrary: 1.0 ChimeraX-AtomSearch: 2.0 ChimeraX-AtomSearchLibrary: 1.0 ChimeraX-AxesPlanes: 2.0 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.2 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.0 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.1 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.1 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-CommandLine: 1.1.3 ChimeraX-ConnectStructure: 2.0 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.2.dev202010010012 ChimeraX-CoreFormats: 1.0 ChimeraX-coulombic: 1.0.1 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-DataFormats: 1.0 ChimeraX-Dicom: 1.0 ChimeraX-DistMonitor: 1.1 ChimeraX-DistUI: 1.0 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.1 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.0 ChimeraX-Hbonds: 2.1 ChimeraX-Help: 1.0 ChimeraX-HKCage: 1.0 ChimeraX-IHM: 1.0 ChimeraX-ImageFormats: 1.0 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0 ChimeraX-Label: 1.0 ChimeraX-ListInfo: 1.0 ChimeraX-Log: 1.1.1 ChimeraX-LookingGlass: 1.1 ChimeraX-Map: 1.0.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.0 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 1.1 ChimeraX-MDcrds: 2.1 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.0 ChimeraX-mmCIF: 2.2 ChimeraX-MMTF: 2.0 ChimeraX-Modeller: 1.0 ChimeraX-ModelPanel: 1.0 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.0 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0 ChimeraX-OpenCommand: 1.3 ChimeraX-PDB: 2.1.1 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.0 ChimeraX-PubChem: 2.0.1 ChimeraX-Read-Pbonds: 1.0 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.2 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SeqView: 2.2.1 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.0 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.0.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.1 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-Struts: 1.0 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.0 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.0 ChimeraX-ToolshedUtils: 1.0 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.3.1 ChimeraX-uniprot: 2.0 ChimeraX-ViewDockX: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.0 ChimeraX-Zone: 1.0 colorama: 0.4.3 comtypes: 1.1.7 cxservices: 1.0 cycler: 0.10.0 Cython: 0.29.21 decorator: 4.4.2 distlib: 0.3.1 docutils: 0.16 filelock: 3.0.12 funcparserlib: 0.3.6 grako: 3.16.5 h5py: 2.10.0 html2text: 2020.1.16 idna: 2.10 ihm: 0.17 imagecodecs: 2020.5.30 imagecodecs-lite: 2020.1.31 imagesize: 1.2.0 ipykernel: 5.3.4 ipython: 7.18.1 ipython-genutils: 0.2.0 jedi: 0.17.2 Jinja2: 2.11.2 jupyter-client: 6.1.7 jupyter-core: 4.6.3 kiwisolver: 1.2.0 line-profiler: 2.1.2 lxml: 4.5.2 MarkupSafe: 1.1.1 matplotlib: 3.3.2 msgpack: 1.0.0 netCDF4: 1.5.4 netifaces: 0.10.9 networkx: 2.5 numexpr: 2.7.1 numpy: 1.19.2 numpydoc: 1.1.0 openvr: 1.14.1501 packaging: 20.4 parso: 0.7.1 pickleshare: 0.7.5 Pillow: 7.2.0 pip: 20.2.3 pkginfo: 1.5.0.1 prompt-toolkit: 3.0.7 psutil: 5.7.2 pycollada: 0.7.1 pydicom: 2.0.0 Pygments: 2.7.1 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 2.4.7 PyQt5-commercial: 5.15.1 PyQt5-sip: 12.8.1 PyQtWebEngine-commercial: 5.15.1 python-dateutil: 2.8.1 pytz: 2020.1 pywin32: 228 pyzmq: 19.0.2 qtconsole: 4.7.7 QtPy: 1.9.0 RandomWords: 0.3.0 requests: 2.24.0 scipy: 1.5.2 setuptools: 50.3.0 sfftk-rw: 0.6.6.dev0 six: 1.15.0 snowballstemmer: 2.0.0 sortedcontainers: 2.2.2 Sphinx: 3.2.1 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 2.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 1.0.3 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.4 suds-jurko: 0.6 tables: 3.6.1 tifffile: 2020.9.3 tinyarray: 1.2.3 tornado: 6.0.4 traitlets: 5.0.4 urllib3: 1.25.10 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.34.2 WMI: 1.5.1
Change History (2)
comment:1 by , 5 years ago
Component: | Unassigned → VR |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → VR meeting, AttributeError: 'NoneType' object has no attribute 'tobytes' |
comment:2 by , 5 years ago
Resolution: | → duplicate |
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Status: | assigned → closed |
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Duplicate of #3780