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Opened 5 years ago
Closed 5 years ago
#3776 closed defect (can't reproduce)
Crash during Python initialization
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.6.0-x86_64-i386-64bit
ChimeraX Version: 1.0 (2020-05-08)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [34842]
Path: /Users/USER/Documents/*/ChimeraX-1.0-rc-2020.05.08.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 0
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [34842]
User ID: 501
Date/Time: 2020-09-30 17:02:32.618 +0200
OS Version: Mac OS X 10.15.6 (19G2021)
Report Version: 12
Bridge OS Version: 4.6 (17P6610)
Anonymous UUID: 7CCC0AC4-DAB1-A381-844C-9F294FA3F7B4
Sleep/Wake UUID: F195454D-F1D0-4B5B-BF8C-BC39E35C9F0D
Time Awake Since Boot: 110000 seconds
Time Since Wake: 4900 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
dyld2 mode
abort() called
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff70cdf33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff70d9be60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff70c66808 abort + 120
3 org.python.python 0x0000000109cfd693 fatal_error + 531
4 org.python.python 0x0000000109cfcbae _Py_FatalInitError + 30
5 org.python.python 0x0000000109d286f2 pymain_main + 8850
6 org.python.python 0x0000000109d26453 Py_Main + 51
7 ChimeraX 0x0000000109bccdc8 main + 120
8 libdyld.dylib 0x00007fff70b97cc9 start + 1
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010b71adc0 rcx: 0x00007ffee6033668 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007ffee6033690 rsp: 0x00007ffee6033668
r8: 0x0000000000000000 r9: 0x00000000000000e4 r10: 0x000000010b71adc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007fff97475620 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff70cdf33a rfl: 0x0000000000000246 cr2: 0x00007fcce8050020
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x109bcc000 - 0x109bccff3 +ChimeraX (0) /Users/USER/Documents/*/ChimeraX-1.0-rc-2020.05.08.app/Contents/MacOS/ChimeraX
0x109bd5000 - 0x109dd0fff +org.python.python (3.7.7, [c] 2001-2019 Python Software Foundation. - 3.7.7) /Users/USER/Documents/*/ChimeraX-1.0-rc-2020.05.08.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/Python
0x10b650000 - 0x10b6e1f47 dyld (750.6) /usr/lib/dyld
0x7fff36c40000 - 0x7fff370bffeb com.apple.CoreFoundation (6.9 - 1677.104) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff6d6a6000 - 0x7fff6d6a8ff7 libDiagnosticMessagesClient.dylib (112) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6db7c000 - 0x7fff6db7dfff libSystem.B.dylib (1281.100.1) /usr/lib/libSystem.B.dylib
0x7fff6de62000 - 0x7fff6deb4fff libc++.1.dylib (902.1) /usr/lib/libc++.1.dylib
0x7fff6deb5000 - 0x7fff6decaffb libc++abi.dylib (902) /usr/lib/libc++abi.dylib
0x7fff6e934000 - 0x7fff6e936fff libfakelink.dylib (149.1) /usr/lib/libfakelink.dylib
0x7fff6ea46000 - 0x7fff6ec9dfff libicucore.A.dylib (64260.0.1) /usr/lib/libicucore.A.dylib
0x7fff6f9dc000 - 0x7fff6fa0ffde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff700b8000 - 0x7fff700caff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff70979000 - 0x7fff7097eff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff7097f000 - 0x7fff7098afff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff7098b000 - 0x7fff70992fff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff70993000 - 0x7fff7099cff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff7099d000 - 0x7fff70a2ffdb libcorecrypto.dylib (866.140.1) /usr/lib/system/libcorecrypto.dylib
0x7fff70b3c000 - 0x7fff70b7cff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff70b7d000 - 0x7fff70bb3fff libdyld.dylib (750.6) /usr/lib/system/libdyld.dylib
0x7fff70bb4000 - 0x7fff70bb4ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff70bc2000 - 0x7fff70bc2ff7 liblaunch.dylib (1738.140.1) /usr/lib/system/liblaunch.dylib
0x7fff70bc3000 - 0x7fff70bc8ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff70bc9000 - 0x7fff70bcbff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff70bcc000 - 0x7fff70bcdff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff70bce000 - 0x7fff70be5ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff70be6000 - 0x7fff70be6ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff70be7000 - 0x7fff70c6efff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff70c6f000 - 0x7fff70c72ffb libsystem_configuration.dylib (1061.141.1) /usr/lib/system/libsystem_configuration.dylib
0x7fff70c73000 - 0x7fff70c76fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff70c77000 - 0x7fff70c7ffff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff70c80000 - 0x7fff70c87fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff70c88000 - 0x7fff70c89ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff70c8a000 - 0x7fff70cd7ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff70cd8000 - 0x7fff70d04ff7 libsystem_kernel.dylib (6153.141.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff70d05000 - 0x7fff70d4cfff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff70d4d000 - 0x7fff70d74fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff70d75000 - 0x7fff70d82ffb libsystem_networkextension.dylib (1095.140.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff70d83000 - 0x7fff70d8cff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff70d8d000 - 0x7fff70d95fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff70d96000 - 0x7fff70da0fff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff70da1000 - 0x7fff70da5ff3 libsystem_sandbox.dylib (1217.141.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff70da6000 - 0x7fff70da8fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff70da9000 - 0x7fff70db0ffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff70db1000 - 0x7fff70dc7ff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff70dc9000 - 0x7fff70dceff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff70dcf000 - 0x7fff70e04ffe libxpc.dylib (1738.140.1) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 9792237
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=403.2M resident=0K(0%) swapped_out_or_unallocated=403.2M(100%)
Writable regions: Total=676.2M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=676.2M(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Kernel Alloc Once 8K 1
MALLOC 163.2M 16
MALLOC guard page 24K 5
MALLOC_MEDIUM (reserved) 120.0M 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
STACK GUARD 56.0M 1
Stack 8192K 1
VM_ALLOCATE 768K 3
__DATA 2577K 48
__DATA_CONST 20K 1
__LINKEDIT 389.6M 4
__OBJC_RO 32.3M 1
__OBJC_RW 1908K 2
__TEXT 13.6M 46
__UNICODE 564K 1
shared memory 8K 2
=========== ======= =======
TOTAL 1.1G 134
TOTAL, minus reserved VM space 668.4M 134
Log:
UCSF ChimeraX version: 1.0rc202005080235 (2020-05-08)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-3.10.16
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 64 GB
Boot ROM Version: 1037.147.4.0.0 (iBridge: 17.16.16610.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.6 (19G2021)
Kernel Version: Darwin 19.6.0
Time since boot: 11 days 6:49
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 8 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-019
Option ROM Version: 113-D32206U1-019
EFI Driver Version: 01.01.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash during Python initialization |
comment:2 by , 5 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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