![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 3 years ago
#3774 closed defect (fixed)
'ProperDihedral' object has no attribute '_c_pointer_ref'
| Reported by: | Owned by: | Tristan Croll | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | pett | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted: Platform: Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core ChimeraX Version: 1.0 (2020-06-04 23:15:07 UTC) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 1.0 (2020-06-04) © 2016-2020 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /home/hpclab/Downloads/phlp3_aligned_2.pdb Summary of feedback from opening /home/hpclab/Downloads/phlp3_aligned_2.pdb --- warning | Ignored bad PDB record found on line 1384 END phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb #1 --- Chain | Description C | No description available > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 > volume #2 level 0.2603 > volume #2 step 1 > ui tool show ISOLDE > set selectionWidth 4 phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb --- Chain | Description 1.2/C | No description available Done loading forcefield > volume #1.1.1.1 level 0.3288 > select clear > select up Nothing selected > select up Nothing selected > select up Nothing selected > select up Nothing selected > select up Nothing selected > select up Nothing selected > select up 9 atoms, 8 bonds, 1 model selected > select up 62 atoms, 62 bonds, 1 model selected > select up 1251 atoms, 1277 bonds, 1 model selected > addh Summary of feedback from adding hydrogens to phlp3_aligned_2.pdb #1.2 --- notes | No usable SEQRES records for phlp3_aligned_2.pdb (#1.2) chain C; guessing termini instead Chain-initial residues that are actual N termini: /C LEU 53 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: /C THR 206 Chain-final residues that are not actual C termini: 103 hydrogen bonds 1253 hydrogens added > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models > hide #!1.2 models > show #!1.2 models reverting to start > hide #!1.2 models > show #!1.2 models > close #1.2 Deleting atomic symmetry model... Deleting atomic symmetry model... > open /home/hpclab/Downloads/phlp3_aligned.pdb Summary of feedback from opening /home/hpclab/Downloads/phlp3_aligned.pdb --- warning | Ignored bad PDB record found on line 1087 END phlp3_aligned.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned.pdb #2 --- Chain | Description C | No description available > ui tool show ISOLDE > set selectionWidth 4 Deleting atomic symmetry model... phlp3_aligned.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned.pdb --- Chain | Description 2.2/C | No description available Done loading forcefield > select up 50 atoms, 50 bonds, 1 model selected > select up 956 atoms, 977 bonds, 1 model selected > close #1.1.1.1 Deleting atomic symmetry model... > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 Deleting atomic symmetry model... Deleting atomic symmetry model... > select clear > select clear > select up 110 atoms, 113 bonds, 1 model selected > select up 956 atoms, 977 bonds, 1 model selected > addh Summary of feedback from adding hydrogens to phlp3_aligned.pdb #2.2 --- notes | No usable SEQRES records for phlp3_aligned.pdb (#2.2) chain C; guessing termini instead Chain-initial residues that are actual N termini: /C LYS 86 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: /C THR 206 Chain-final residues that are not actual C termini: 79 hydrogen bonds 987 hydrogens added > volume #2.1.1.1 level 0.1665 > save phlp3_body_mdff.pdb #2 > save /home/hpclab/Downloads/fdh_isolde_test.pdb > close #2.1.1.1 Deleting atomic symmetry model... > close Deleting atomic symmetry model... Deleting atomic symmetry model... > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 > open /home/hpclab/Downloads/phlp3_aligned_not_modified.pdb Summary of feedback from opening /home/hpclab/Downloads/phlp3_aligned_not_modified.pdb --- warning | Ignored bad PDB record found on line 1679 END phlp3_aligned_not_modified.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_not_modified.pdb #2 --- Chain | Description C | No description available > volume #1 step 1 > volume #1 level 0.2209 > volume #1 level 0.3271 > ui tool show ISOLDE > set selectionWidth 4 phlp3_aligned_not_modified.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_not_modified.pdb --- Chain | Description 2.2/C | No description available Done loading forcefield > volume #2.1.1.1 level 0.2405 > select clear > select up 105 atoms, 105 bonds, 1 model selected > select up 1545 atoms, 1574 bonds, 1 model selected > addh Summary of feedback from adding hydrogens to phlp3_aligned_not_modified.pdb #2.2 --- notes | No usable SEQRES records for phlp3_aligned_not_modified.pdb (#2.2) chain C; guessing termini instead Chain-initial residues that are actual N termini: /C LYS 17 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: /C THR 206 Chain-final residues that are not actual C termini: 126 hydrogen bonds 1548 hydrogens added > volume #2.1.1.1 level 0.1629 > volume #2.1.1.1 level 0.04027 > volume #2.1.1.1 level 0.227 > volume #2.1.1.1 level 0.08695 > hide #!2 models > show #!2 models > volume #2.1.1.1 level 0.2162 > close #2.1.1.1 > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 > volume #1 level 0.05074 > volume #1 step 1 > volume #1 level 0.3941 > volume #1 level 0.2428 > volume #1 level 0.5289 > volume #1 level 0.3777 > close #1 > close Deleting atomic symmetry model... > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 > volume #1 step 1 > volume #1 level 0.3557 > open /home/hpclab/Downloads/phlp3_aligned_2.pdb Summary of feedback from opening /home/hpclab/Downloads/phlp3_aligned_2.pdb --- warning | Ignored bad PDB record found on line 1384 END phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb #2 --- Chain | Description C | No description available > select /C:87 8 atoms, 7 bonds, 1 model selected > select up 67 atoms, 67 bonds, 1 model selected > delete atoms sel > delete bonds sel > hide (protein|nucleic) target a > cartoon hide > show ((protein&@ca)|(nucleic&@p)) target ab > style stick Changed 1184 atom styles > nucleotides atoms > style nucleic stick Changed 0 atom styles > show cartoons > ui tool show ISOLDE > set selectionWidth 4 phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb --- Chain | Description 2.2/C | No description available Done loading forcefield > delete atoms (#!2.2 & sel) > delete bonds (#!2.2 & sel) > delete atoms Deleting atomic symmetry model... Deleting atomic symmetry model... > delete bonds > select #2 6 models selected > ~select #2 Nothing selected > open /home/hpclab/Downloads/phlp3_aligned_2.pdb Summary of feedback from opening /home/hpclab/Downloads/phlp3_aligned_2.pdb --- warning | Ignored bad PDB record found on line 1384 END phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb #1 --- Chain | Description C | No description available > select clear > select /C:67 8 atoms, 7 bonds, 1 model selected > select /C:68 9 atoms, 8 bonds, 1 model selected > select clear > select /C:89 8 atoms, 7 bonds, 1 model selected > select up 67 atoms, 67 bonds, 1 model selected > delete atoms sel Deleting atomic symmetry model... > delete bonds sel > ui tool show ISOLDE > set selectionWidth 4 Deleting atomic symmetry model... phlp3_aligned_2.pdb title: SWISS-MODEL SERVER (https://swissmodel.expasy.org) Untitled Project [more info...] Chain information for phlp3_aligned_2.pdb --- Chain | Description 1.2/C | No description available Done loading forcefield > close #2.1.1.1 Deleting atomic symmetry model... > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 Deleting atomic symmetry model... Deleting atomic symmetry model... > volume #1.1.1.1 level 0.1793 > select up 58 atoms, 58 bonds, 1 model selected > select up 1184 atoms, 1208 bonds, 1 model selected > addh Summary of feedback from adding hydrogens to phlp3_aligned_2.pdb #1.2 --- notes | No usable SEQRES records for phlp3_aligned_2.pdb (#1.2) chain C; guessing termini instead Chain-initial residues that are actual N termini: /C LEU 53 Chain-initial residues that are not actual N termini: /C VAL 94 Chain-final residues that are actual C termini: /C THR 206 Chain-final residues that are not actual C termini: /C THR 85 103 hydrogen bonds Adding 'H' to /C VAL 94 /C THR 85 is not terminus, removing H atom from 'C' 1179 hydrogens added > show sel cartoons > show sel cartoons > close #1.1.1.1 Deleting atomic symmetry model... > open /home/hpclab/Downloads/php3_only_aligned.mrc Opened php3_only_aligned.mrc, grid size 320,320,320, pixel 1.12, shown at level 0.000166, step 2, values float32 > volume #3 step 1 > volume #3 level 0.3844 > select clear > select /C:85@CA 1 atom, 1 model selected > select /C:85 14 atoms, 13 bonds, 1 model selected > select up 331 atoms, 333 bonds, 1 model selected > select down 14 atoms, 13 bonds, 1 model selected > delete atoms (#!1.2 & sel) Deleting atomic symmetry model... > delete bonds (#!1.2 & sel) > select clear > select /C:196@CA 1 atom, 1 model selected > select up 24 atoms, 25 bonds, 1 model selected > select up 161 atoms, 162 bonds, 1 model selected > select clear > select #3 4 models selected > select clear > select /C:83@CA 1 atom, 1 model selected > select up 22 atoms, 21 bonds, 1 model selected > delete atoms (#!1.2 & sel) Deleting atomic symmetry model... > delete bonds (#!1.2 & sel) > select up 2 atoms, 1 bond, 1 model selected > select up 24 atoms, 25 bonds, 1 model selected > delete atoms (#!1.2 & sel) Deleting atomic symmetry model... > delete bonds (#!1.2 & sel) > select /C:84@CA 1 atom, 1 model selected > select /C:84@CA 1 atom, 1 model selected > select up 2 atoms, 1 bond, 1 model selected > select up 10 atoms, 9 bonds, 1 model selected > delete atoms (#!1.2 & sel) Deleting atomic symmetry model... > delete bonds (#!1.2 & sel) > select clear > ui tool show ISOLDE > set selectionWidth 4 Done loading forcefield Deleting atomic symmetry model... Deleting atomic symmetry model... > select up 119 atoms, 119 bonds, 1 model selected > select up 2293 atoms, 2315 bonds, 1 model selected Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. [a _lot_ of these deleted] Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. Traceback (most recent call last): File "/opt/UCSF/ChimeraX/lib/python3.7/site- packages/chimerax/core/triggerset.py", line 130, in invoke return self._func(self._name, data) File "/home/hpclab/.local/share/ChimeraX/1.0/site- packages/chimerax/isolde/isolde.py", line 2209, in _update_selected_residue_info_live oval = degrees(omega.angle) File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' Error processing trigger "changes": AttributeError: 'ProperDihedral' object has no attribute '_c_pointer_ref' File "/opt/UCSF/ChimeraX/lib/python3.7/site-packages/chimerax/atomic/molc.py", line 93, in get_prop cget(self._c_pointer_ref, 1, v_ref) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 430.50 OpenGL renderer: GeForce RTX 2070 SUPER/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Manufacturer: To Be Filled By O.E.M. Model: To Be Filled By O.E.M. OS: CentOS Linux 7 Core Architecture: 64bit ELF CPU: 8 Intel(R) Core(TM) i7-9700K CPU @ 3.60GHz Cache Size: 12288 KB Memory: total used free shared buff/cache available Mem: 31G 13G 4.4G 296M 13G 16G Swap: 31G 3.0M 31G Graphics: 01:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:1e84] (rev a1) Subsystem: Gigabyte Technology Co., Ltd Device [1458:4008] Kernel driver in use: nvidia PyQt version: 5.12.3 Compiled Qt version: 5.12.4 Runtime Qt version: 5.12.8
Change History (2)
comment:1 by , 5 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Third Party |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → 'ProperDihedral' object has no attribute '_c_pointer_ref' |
comment:2 by , 3 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
Note:
See TracTickets
for help on using tickets.
Most likely a GUI table failing to refresh itself when the selected model was closed - fixed by the new GUI.