![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 5 years ago
Closed 5 years ago
#3769 closed defect (nonchimerax)
Graphics hardware encountered an error and was reset
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-19.5.0-x86_64-i386-64bit
ChimeraX Version: 1.1 (2020-09-09 22:22:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [29065]
Path: /Applications/ChimeraX-1.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.1.0 (1.1.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [29065]
User ID: 501
Date/Time: 2020-09-29 09:39:01.666 -0700
OS Version: Mac OS X 10.15.5 (19F96)
Report Version: 12
Bridge OS Version: 4.5 (17P5290)
Anonymous UUID: AA91FA8B-0A8D-862D-FF09-8117DC28E3DD
Sleep/Wake UUID: 0829E59A-E48B-4A21-A07C-FFAEA02D5410
Time Awake Since Boot: 280000 seconds
Time Since Wake: 1100 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Application Specific Signatures:
Graphics hardware encountered an error and was reset: 0x00000813
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7114c33a __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff71208e60 pthread_kill + 430
2 libsystem_c.dylib 0x00007fff7106393e raise + 26
3 libsystem_platform.dylib 0x00007fff711fd5fd _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff710d3808 abort + 120
6 libGPUSupportMercury.dylib 0x00007fff584240a5 gpusGenerateCrashLog.cold.1 + 95
7 libGPUSupportMercury.dylib 0x00007fff5841b18f gpusGenerateCrashLog + 89
8 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2f72df18 gpusKillClientExt + 9
9 libGPUSupportMercury.dylib 0x00007fff5841c6a1 gpusSubmitDataBuffers + 490
10 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2e99a086 IntelCommandBuffer::getNew(GLDContextRec*) + 48
11 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2e999e94 intelSubmitCommands + 171
12 com.apple.driver.AppleIntelKBLGraphicsGLDriver 0x00007fff2eac4d8a gldPresentFramebufferData + 120
13 GLEngine 0x00007fff41b298d1 glSwap_Exec + 97
14 com.apple.opengl 0x00007fff41b0b473 CGLFlushDrawable + 59
15 com.apple.AppKit 0x00007fff34628f2a -[NSOpenGLContext flushBuffer] + 20
16 libqcocoa.dylib 0x000000011b9cbd3d 0x11b975000 + 355645
17 QtGui 0x00000001116ada6c QOpenGLContext::swapBuffers(QSurface*) + 412
18 QtGui.so 0x000000011406959f meth_QOpenGLContext_swapBuffers(_object*, _object*) + 95
19 org.python.python 0x0000000103e843a2 _PyMethodDef_RawFastCallKeywords + 226
20 org.python.python 0x0000000103e838d9 _PyCFunction_FastCallKeywords + 41
21 org.python.python 0x0000000103f58b70 call_function + 656
22 org.python.python 0x0000000103f55827 _PyEval_EvalFrameDefault + 26567
23 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
24 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
25 org.python.python 0x0000000103f58be4 call_function + 772
26 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
27 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
28 org.python.python 0x0000000103f58be4 call_function + 772
29 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
30 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
31 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
32 org.python.python 0x0000000103f58be4 call_function + 772
33 org.python.python 0x0000000103f4f5d4 _PyEval_EvalFrameDefault + 1396
34 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
35 org.python.python 0x0000000103f58be4 call_function + 772
36 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
37 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
38 org.python.python 0x0000000103e84893 _PyObject_Call_Prepend + 131
39 org.python.python 0x0000000103e839f8 PyObject_Call + 136
40 QtCore.so 0x0000000113decf17 PyQtSlot::call(_object*, _object*) const + 39
41 QtCore.so 0x0000000113dece26 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
42 QtCore.so 0x0000000113ded925 PyQtSlotProxy::unislot(void**) + 85
43 QtCore.so 0x0000000113ded89a PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
44 QtCore 0x0000000111dae13d QMetaObject::activate(QObject*, int, int, void**) + 1773
45 QtCore 0x0000000111db61f2 QTimer::timerEvent(QTimerEvent*) + 98
46 QtCore.so 0x0000000113ce3028 sipQTimer::timerEvent(QTimerEvent*) + 120
47 QtCore 0x0000000111da6ab6 QObject::event(QEvent*) + 102
48 QtCore.so 0x0000000113ce2e9b sipQTimer::event(QEvent*) + 187
49 QtWidgets 0x000000011109167d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
50 QtWidgets 0x0000000111092a82 QApplication::notify(QObject*, QEvent*) + 594
51 QtWidgets.so 0x0000000110c513ca sipQApplication::notify(QObject*, QEvent*) + 234
52 QtCore 0x0000000111d7d324 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
53 QtCore 0x0000000111dd693f QTimerInfoList::activateTimers() + 991
54 libqcocoa.dylib 0x000000011b9aa032 0x11b975000 + 217138
55 com.apple.CoreFoundation 0x00007fff37009de2 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
56 com.apple.CoreFoundation 0x00007fff37009d81 __CFRunLoopDoSource0 + 103
57 com.apple.CoreFoundation 0x00007fff37009b9b __CFRunLoopDoSources0 + 209
58 com.apple.CoreFoundation 0x00007fff370088ca __CFRunLoopRun + 927
59 com.apple.CoreFoundation 0x00007fff37007ece CFRunLoopRunSpecific + 462
60 com.apple.HIToolbox 0x00007fff35c36abd RunCurrentEventLoopInMode + 292
61 com.apple.HIToolbox 0x00007fff35c367d5 ReceiveNextEventCommon + 584
62 com.apple.HIToolbox 0x00007fff35c36579 _BlockUntilNextEventMatchingListInModeWithFilter + 64
63 com.apple.AppKit 0x00007fff3427e829 _DPSNextEvent + 883
64 com.apple.AppKit 0x00007fff3427d070 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1352
65 com.apple.AppKit 0x00007fff3426ed7e -[NSApplication run] + 658
66 libqcocoa.dylib 0x000000011b9aade3 0x11b975000 + 220643
67 QtCore 0x0000000111d7893f QEventLoop::exec(QFlags) + 431
68 QtCore 0x0000000111d7d932 QCoreApplication::exec() + 130
69 QtWidgets.so 0x0000000110d407d2 meth_QApplication_exec_(_object*, _object*) + 82
70 org.python.python 0x0000000103e843a2 _PyMethodDef_RawFastCallKeywords + 226
71 org.python.python 0x0000000103e838d9 _PyCFunction_FastCallKeywords + 41
72 org.python.python 0x0000000103f58b70 call_function + 656
73 org.python.python 0x0000000103f55827 _PyEval_EvalFrameDefault + 26567
74 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
75 org.python.python 0x0000000103f58be4 call_function + 772
76 org.python.python 0x0000000103f55827 _PyEval_EvalFrameDefault + 26567
77 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
78 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
79 org.python.python 0x0000000103f58be4 call_function + 772
80 org.python.python 0x0000000103f558be _PyEval_EvalFrameDefault + 26718
81 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
82 org.python.python 0x0000000103f4efc0 PyEval_EvalCode + 48
83 org.python.python 0x0000000103f4c557 builtin_exec + 583
84 org.python.python 0x0000000103e8454d _PyMethodDef_RawFastCallKeywords + 653
85 org.python.python 0x0000000103e838d9 _PyCFunction_FastCallKeywords + 41
86 org.python.python 0x0000000103f58b70 call_function + 656
87 org.python.python 0x0000000103f558be _PyEval_EvalFrameDefault + 26718
88 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
89 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
90 org.python.python 0x0000000103f58be4 call_function + 772
91 org.python.python 0x0000000103f558be _PyEval_EvalFrameDefault + 26718
92 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
93 org.python.python 0x0000000103e83397 _PyFunction_FastCallDict + 455
94 org.python.python 0x0000000103fb3b03 pymain_run_module + 147
95 org.python.python 0x0000000103fb2bec pymain_main + 5900
96 org.python.python 0x0000000103fb14d3 Py_Main + 51
97 edu.ucsf.cgl.ChimeraX 0x0000000103e57dc8 main + 120
98 libdyld.dylib 0x00007fff71004cc9 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff71145f02 swtch_pri + 10
1 libsystem_pthread.dylib 0x00007fff71206698 sched_yield + 11
2 libopenblasp-r0.3.7.dylib 0x0000000105778c05 blas_thread_server + 565
3 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 2:
0 libopenblasp-r0.3.7.dylib 0x0000000105778c07 blas_thread_server + 567
1 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
2 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff71148882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff71209425 _pthread_cond_wait + 698
2 libopenblasp-r0.3.7.dylib 0x0000000105778c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
4 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 4:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff37009f85 __CFRunLoopServiceMachPort + 247
3 com.apple.CoreFoundation 0x00007fff37008a52 __CFRunLoopRun + 1319
4 com.apple.CoreFoundation 0x00007fff37007ece CFRunLoopRunSpecific + 462
5 com.apple.AppKit 0x00007fff34420144 _NSEventThread + 132
6 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x000000011652e05d 0x1143d8000 + 34955357
5 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 6:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff7114a766 kevent + 10
1 QtWebEngineCore 0x000000011683b9a9 0x1143d8000 + 38156713
2 QtWebEngineCore 0x0000000116838cbd 0x1143d8000 + 38145213
3 QtWebEngineCore 0x00000001165efcdc 0x1143d8000 + 35749084
4 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
5 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
6 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
7 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 7:: TaskSchedulerServiceThread
0 libsystem_kernel.dylib 0x00007fff7114a766 kevent + 10
1 QtWebEngineCore 0x000000011683b9a9 0x1143d8000 + 38156713
2 QtWebEngineCore 0x0000000116838cbd 0x1143d8000 + 38145213
3 QtWebEngineCore 0x00000001165efcc4 0x1143d8000 + 35749060
4 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
5 QtWebEngineCore 0x0000000116598a74 0x1143d8000 + 35392116
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 8:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a421 0x1143d8000 + 35267617
4 QtWebEngineCore 0x0000000116591d28 0x1143d8000 + 35364136
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x00000001165922c4 0x1143d8000 + 35365572
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 9:: TaskSchedulerForegroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a421 0x1143d8000 + 35267617
4 QtWebEngineCore 0x0000000116591d28 0x1143d8000 + 35364136
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x00000001165922c4 0x1143d8000 + 35365572
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 10:: TaskSchedulerBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a421 0x1143d8000 + 35267617
4 QtWebEngineCore 0x0000000116591d28 0x1143d8000 + 35364136
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x0000000116592234 0x1143d8000 + 35365428
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 11:: TaskSchedulerBackgroundBlockingWorker
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a421 0x1143d8000 + 35267617
4 QtWebEngineCore 0x0000000116591d28 0x1143d8000 + 35364136
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x0000000116592234 0x1143d8000 + 35365428
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 12:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff7114a766 kevent + 10
1 QtWebEngineCore 0x000000011683b9a9 0x1143d8000 + 38156713
2 QtWebEngineCore 0x0000000116838cbd 0x1143d8000 + 38145213
3 QtWebEngineCore 0x00000001165efcc4 0x1143d8000 + 35749060
4 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
5 QtWebEngineCore 0x0000000115ec5fe4 0x1143d8000 + 28237796
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 13:: TaskSchedulerSingleThreadSharedBackgroundBlocking0
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x0000000116591d1a 0x1143d8000 + 35364122
5 QtWebEngineCore 0x00000001165923bf 0x1143d8000 + 35365823
6 QtWebEngineCore 0x0000000116592264 0x1143d8000 + 35365476
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 14:: CompositorTileWorker1/72711
0 libsystem_kernel.dylib 0x00007fff71148882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff71209425 _pthread_cond_wait + 698
2 QtWebEngineCore 0x00000001165e7fa8 0x1143d8000 + 35717032
3 QtWebEngineCore 0x000000011756e4c8 0x1143d8000 + 51995848
4 QtWebEngineCore 0x00000001165a8694 0x1143d8000 + 35456660
5 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
6 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
7 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x000000011652e05d 0x1143d8000 + 34955357
5 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x000000011652e05d 0x1143d8000 + 34955357
5 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 17:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011652e052 0x1143d8000 + 34955346
4 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
5 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
6 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
7 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 18:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff7114a766 kevent + 10
1 QtWebEngineCore 0x000000011683b9a9 0x1143d8000 + 38156713
2 QtWebEngineCore 0x0000000116838cbd 0x1143d8000 + 38145213
3 QtWebEngineCore 0x00000001165efcdc 0x1143d8000 + 35749084
4 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
5 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
6 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
7 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
8 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 19:: TaskSchedulerSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x0000000116591d1a 0x1143d8000 + 35364122
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x0000000116592324 0x1143d8000 + 35365668
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a22f 0x1143d8000 + 35267119
4 QtWebEngineCore 0x000000011652e05d 0x1143d8000 + 34955357
5 QtWebEngineCore 0x0000000116557085 0x1143d8000 + 35123333
6 QtWebEngineCore 0x00000001165a99bc 0x1143d8000 + 35461564
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 21:: TaskSchedulerForegroundWorker
0 libsystem_kernel.dylib 0x00007fff71145dfa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff71146170 mach_msg + 60
2 QtWebEngineCore 0x000000011657a32d 0x1143d8000 + 35267373
3 QtWebEngineCore 0x000000011657a421 0x1143d8000 + 35267617
4 QtWebEngineCore 0x0000000116591d28 0x1143d8000 + 35364136
5 QtWebEngineCore 0x000000011659265b 0x1143d8000 + 35366491
6 QtWebEngineCore 0x00000001165922c4 0x1143d8000 + 35365572
7 QtWebEngineCore 0x00000001165e9717 0x1143d8000 + 35723031
8 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
9 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff71204b68 start_wqthread + 0
Thread 23:
0 libsystem_kernel.dylib 0x00007fff71148882 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff71209425 _pthread_cond_wait + 698
2 org.python.python 0x0000000103f9d0bf PyThread_acquire_lock_timed + 351
3 org.python.python 0x0000000103fe89ef acquire_timed + 111
4 org.python.python 0x0000000103fe876c lock_PyThread_acquire_lock + 44
5 org.python.python 0x0000000103e8458a _PyMethodDef_RawFastCallKeywords + 714
6 org.python.python 0x0000000103e8a591 _PyMethodDescr_FastCallKeywords + 81
7 org.python.python 0x0000000103f58c0e call_function + 814
8 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
9 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
10 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
11 org.python.python 0x0000000103f58be4 call_function + 772
12 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
13 org.python.python 0x0000000103f59a3c _PyEval_EvalCodeWithName + 3276
14 org.python.python 0x0000000103e83899 _PyFunction_FastCallKeywords + 217
15 org.python.python 0x0000000103f58be4 call_function + 772
16 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
17 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
18 org.python.python 0x0000000103f58be4 call_function + 772
19 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
20 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
21 org.python.python 0x0000000103f58be4 call_function + 772
22 org.python.python 0x0000000103f5580a _PyEval_EvalFrameDefault + 26538
23 org.python.python 0x0000000103e83d81 function_code_fastcall + 177
24 org.python.python 0x0000000103e84893 _PyObject_Call_Prepend + 131
25 org.python.python 0x0000000103e839f8 PyObject_Call + 136
26 org.python.python 0x0000000103fe9297 t_bootstrap + 71
27 org.python.python 0x0000000103f9cd29 pythread_wrapper + 25
28 libsystem_pthread.dylib 0x00007fff71209109 _pthread_start + 148
29 libsystem_pthread.dylib 0x00007fff71204b8b thread_start + 15
Thread 24:
0 libsystem_pthread.dylib 0x00007fff71204b68 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff71204b68 start_wqthread + 0
Thread 26:
0 libsystem_pthread.dylib 0x00007fff71204b68 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010cad3dc0 rcx: 0x00007fde52e77a58 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x00007fde52e77a80 rsp: 0x00007fde52e77a58
r8: 0x00007fde52e77f48 r9: 0xa8484ff0d2e4e836 r10: 0x000000010cad3dc0 r11: 0x0000000000000246
r12: 0x0000000000000307 r13: 0x00007fde5669c518 r14: 0x0000000000000006 r15: 0x0000000000000016
rip: 0x00007fff7114c33a rfl: 0x0000000000000246 cr2: 0x000000010caa6004
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x7fff6f7ce000 - 0x7fff6f7fdfff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff6f92d000 - 0x7fff6fda9ff5 libnetwork.dylib (1880.120.4) /usr/lib/libnetwork.dylib
0x7fff6fdaa000 - 0x7fff6fdc1fff libnetworkextension.dylib (1095.120.6) /usr/lib/libnetworkextension.dylib
0x7fff6fe4a000 - 0x7fff6fe7dfde libobjc.A.dylib (787.1) /usr/lib/libobjc.A.dylib
0x7fff6fe7e000 - 0x7fff6fe7fff7 libodfde.dylib (26) /usr/lib/libodfde.dylib
0x7fff6fe90000 - 0x7fff6fe94fff libpam.2.dylib (25.100.1) /usr/lib/libpam.2.dylib
0x7fff6fe97000 - 0x7fff6fecdff7 libpcap.A.dylib (89.120.1) /usr/lib/libpcap.A.dylib
0x7fff6ff0d000 - 0x7fff6ff1bff9 libperfcheck.dylib (37.100.2) /usr/lib/libperfcheck.dylib
0x7fff6ff51000 - 0x7fff6ff69fff libresolv.9.dylib (67.40.1) /usr/lib/libresolv.9.dylib
0x7fff6ff6b000 - 0x7fff6ffafff7 libsandbox.1.dylib (1217.120.7) /usr/lib/libsandbox.1.dylib
0x7fff6ffb0000 - 0x7fff6ffc2ff7 libsasl2.2.dylib (213.120.1) /usr/lib/libsasl2.2.dylib
0x7fff6ffc3000 - 0x7fff6ffc4ff7 libspindump.dylib (281.3) /usr/lib/libspindump.dylib
0x7fff6ffc5000 - 0x7fff701afff7 libsqlite3.dylib (308.5) /usr/lib/libsqlite3.dylib
0x7fff702a3000 - 0x7fff702d0ffb libssl.46.dylib (47.120.1) /usr/lib/libssl.46.dylib
0x7fff703a5000 - 0x7fff703ffff8 libusrtcp.dylib (1880.120.4) /usr/lib/libusrtcp.dylib
0x7fff70400000 - 0x7fff70403ffb libutil.dylib (57) /usr/lib/libutil.dylib
0x7fff70404000 - 0x7fff70411ff7 libxar.1.dylib (425.2) /usr/lib/libxar.1.dylib
0x7fff70417000 - 0x7fff704f9ff7 libxml2.2.dylib (33.3) /usr/lib/libxml2.2.dylib
0x7fff704fd000 - 0x7fff70525fff libxslt.1.dylib (16.9) /usr/lib/libxslt.1.dylib
0x7fff70526000 - 0x7fff70538ff3 libz.1.dylib (76) /usr/lib/libz.1.dylib
0x7fff70de6000 - 0x7fff70debff3 libcache.dylib (83) /usr/lib/system/libcache.dylib
0x7fff70dec000 - 0x7fff70df7fff libcommonCrypto.dylib (60165.120.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff70df8000 - 0x7fff70dfffff libcompiler_rt.dylib (101.2) /usr/lib/system/libcompiler_rt.dylib
0x7fff70e00000 - 0x7fff70e09ff7 libcopyfile.dylib (166.40.1) /usr/lib/system/libcopyfile.dylib
0x7fff70e0a000 - 0x7fff70e9cfe3 libcorecrypto.dylib (866.120.3) /usr/lib/system/libcorecrypto.dylib
0x7fff70fa9000 - 0x7fff70fe9ff0 libdispatch.dylib (1173.100.2) /usr/lib/system/libdispatch.dylib
0x7fff70fea000 - 0x7fff71020fff libdyld.dylib (750.5) /usr/lib/system/libdyld.dylib
0x7fff71021000 - 0x7fff71021ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff71022000 - 0x7fff7102eff3 libkxld.dylib (6153.121.1) /usr/lib/system/libkxld.dylib
0x7fff7102f000 - 0x7fff7102fff7 liblaunch.dylib (1738.120.8) /usr/lib/system/liblaunch.dylib
0x7fff71030000 - 0x7fff71035ff7 libmacho.dylib (959.0.1) /usr/lib/system/libmacho.dylib
0x7fff71036000 - 0x7fff71038ff3 libquarantine.dylib (110.40.3) /usr/lib/system/libquarantine.dylib
0x7fff71039000 - 0x7fff7103aff7 libremovefile.dylib (48) /usr/lib/system/libremovefile.dylib
0x7fff7103b000 - 0x7fff71052ff3 libsystem_asl.dylib (377.60.2) /usr/lib/system/libsystem_asl.dylib
0x7fff71053000 - 0x7fff71053ff7 libsystem_blocks.dylib (74) /usr/lib/system/libsystem_blocks.dylib
0x7fff71054000 - 0x7fff710dbfff libsystem_c.dylib (1353.100.2) /usr/lib/system/libsystem_c.dylib
0x7fff710dc000 - 0x7fff710dfffb libsystem_configuration.dylib (1061.120.2) /usr/lib/system/libsystem_configuration.dylib
0x7fff710e0000 - 0x7fff710e3fff libsystem_coreservices.dylib (114) /usr/lib/system/libsystem_coreservices.dylib
0x7fff710e4000 - 0x7fff710ecfff libsystem_darwin.dylib (1353.100.2) /usr/lib/system/libsystem_darwin.dylib
0x7fff710ed000 - 0x7fff710f4fff libsystem_dnssd.dylib (1096.100.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff710f5000 - 0x7fff710f6ffb libsystem_featureflags.dylib (17) /usr/lib/system/libsystem_featureflags.dylib
0x7fff710f7000 - 0x7fff71144ff7 libsystem_info.dylib (538) /usr/lib/system/libsystem_info.dylib
0x7fff71145000 - 0x7fff71171ff7 libsystem_kernel.dylib (6153.121.1) /usr/lib/system/libsystem_kernel.dylib
0x7fff71172000 - 0x7fff711b9fff libsystem_m.dylib (3178) /usr/lib/system/libsystem_m.dylib
0x7fff711ba000 - 0x7fff711e1fff libsystem_malloc.dylib (283.100.6) /usr/lib/system/libsystem_malloc.dylib
0x7fff711e2000 - 0x7fff711efffb libsystem_networkextension.dylib (1095.120.6) /usr/lib/system/libsystem_networkextension.dylib
0x7fff711f0000 - 0x7fff711f9ff7 libsystem_notify.dylib (241.100.2) /usr/lib/system/libsystem_notify.dylib
0x7fff711fa000 - 0x7fff71202fef libsystem_platform.dylib (220.100.1) /usr/lib/system/libsystem_platform.dylib
0x7fff71203000 - 0x7fff7120dfff libsystem_pthread.dylib (416.100.3) /usr/lib/system/libsystem_pthread.dylib
0x7fff7120e000 - 0x7fff71212ff3 libsystem_sandbox.dylib (1217.120.7) /usr/lib/system/libsystem_sandbox.dylib
0x7fff71213000 - 0x7fff71215fff libsystem_secinit.dylib (62.100.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff71216000 - 0x7fff7121dffb libsystem_symptoms.dylib (1238.120.1) /usr/lib/system/libsystem_symptoms.dylib
0x7fff7121e000 - 0x7fff71234ff2 libsystem_trace.dylib (1147.120) /usr/lib/system/libsystem_trace.dylib
0x7fff71236000 - 0x7fff7123bff7 libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff7123c000 - 0x7fff71271ffe libxpc.dylib (1738.120.8) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 31
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 302947
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=940.3M resident=0K(0%) swapped_out_or_unallocated=940.3M(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 2332K 9
CG image 1176K 30
CoreAnimation 184K 35
CoreGraphics 8K 1
CoreImage 44K 7
CoreUI image data 2256K 31
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 295.6M 336
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Memory Tag 242 12K 1
OpenGL GLSL 512K 6
PROTECTED_MEMORY 4K 1
STACK GUARD 104K 26
Stack 153.2M 27
Stack Guard 56.0M 1
VM_ALLOCATE 165.1M 350
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 51.7M 551
__DATA_CONST 44K 4
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 413.6M 143
__OBJC_RO 32.2M 1
__OBJC_RW 1892K 2
__TEXT 526.8M 512
__UNICODE 564K 1
mapped file 96.6M 64
shared memory 672K 20
=========== ======= =======
TOTAL 2.2G 2179
TOTAL, minus reserved VM space 1.8G 2179
Log:
UCSF ChimeraX version: 1.1 (2020-09-09)
© 2016-2020 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 1FB7
1fb7 title:
Crystal structure of an In vivo hiv-1 protease mutant In complex with
saquinavir: insights INTO the mechanisms of drug resistance [more info...]
Chain information for 1fb7 #1
---
Chain | Description
A | hiv-1 protease
Non-standard residues in 1fb7 #1
---
ROC — (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-
butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1-phenyl-
butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide (Fortovase;
SAQUINAVIR,RO 31-8959)
1fb7 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> set bgColor white
> select ::name="CYS"
12 atoms, 10 bonds, 2 residues, 1 model selected
> open 6lu7
6lu7 title:
The crystal structure of COVID-19 main protease in complex with an inhibitor
N3 [more info...]
Chain information for 6lu7 #2
---
Chain | Description
A | main protease
C | N-[(5-methylisoxazol-3-yl)carbonyl]alanyl-L-
valyl-N~1~-((1R,2Z)-4-(benzyloxy)-4-oxo-1-{[(3R)-2-oxopyrrolidin-3-yl]methyl}but-2-enyl)-L-leucinamide
Non-standard residues in 6lu7 #2
---
010 — phenylmethanol
02J — 5-methyl-1,2-oxazole-3-carboxylic acid
PJE — (E,4S)-4-azanyl-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoic acid
6lu7 mmCIF Assemblies
---
1| author_and_software_defined_assembly
> close #1
> select ::name="CYS"
72 atoms, 60 bonds, 12 residues, 1 model selected
> select /A
2451 atoms, 2420 bonds, 390 residues, 1 model selected
> color sel cornflower blue
> select /C
49 atoms, 51 bonds, 6 residues, 1 model selected
> color sel hot pink
> show sel atoms
> color sel byhetero
> select /A
2451 atoms, 2420 bonds, 390 residues, 1 model selected
> select ::name="CYS"
72 atoms, 60 bonds, 12 residues, 1 model selected
> show sel atoms
> color sel byhetero
> select ::name="HIS"
70 atoms, 71 bonds, 7 residues, 1 model selected
> select clear
> select /A:41
10 atoms, 10 bonds, 1 residue, 1 model selected
> color sel byhetero
> show sel atoms
> ui tool show "Side View"
> color sel orange
> color sel byhetero
> select clear
> select /A:41@CB
1 atom, 1 residue, 1 model selected
> ui tool show Distances
> distance /A:41@CB /A:145@CB
Distance between /A HIS 41 CB and CYS 145 CB: 7.419Å
Must select one or more distances in the table
> ~distance /A:41@CB /A:145@CB
> select /A:41@CE1
1 atom, 1 residue, 1 model selected
> select /A:145@CB
1 atom, 1 residue, 1 model selected
> ui tool show Distances
Exactly two atoms must be selected!
> ui tool show Distances
> distance /A:41@CE1 /A:145@CB
Distance between /A HIS 41 CE1 and CYS 145 CB: 4.202Å
> select /A:41@NE2
1 atom, 1 residue, 1 model selected
> ui tool show Distances
> distance /A:41@NE2 /A:145@CB
Distance between /A HIS 41 NE2 and CYS 145 CB: 3.817Å
OpenGL version: 4.1 INTEL-14.6.18
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,2
Processor Name: Quad-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 1037.120.87.0.0 (iBridge: 17.16.15290.0.0,0)
Software:
System Software Overview:
System Version: macOS 10.15.5 (19F96)
Kernel Version: Darwin 19.5.0
Time since boot: 6 days 14:21
Graphics/Displays:
Intel Iris Plus Graphics 655:
Chipset Model: Intel Iris Plus Graphics 655
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3ea5
Revision ID: 0x0001
Metal: Supported, feature set macOS GPUFamily2 v1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
HP 23er:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 3CM015127T
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DVI or HDMI
Adapter Firmware Version: 7.55
PyQt version: 5.12.3
Compiled Qt version: 5.12.4
Runtime Qt version: 5.12.9
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.0
Babel: 2.8.0
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2020.6.20
chardet: 3.0.4
ChimeraX-AddH: 2.1.1
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.1
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.6.1
ChimeraX-AtomSearch: 2.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 1.0.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.0
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.1
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-CommandLine: 1.1.3
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.1
ChimeraX-CoreFormats: 1.0
ChimeraX-coulombic: 1.0.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-DataFormats: 1.0
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.0
ChimeraX-Hbonds: 2.0
ChimeraX-Help: 1.0
ChimeraX-HKCage: 1.0
ChimeraX-IHM: 1.0
ChimeraX-ImageFormats: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0
ChimeraX-Label: 1.0
ChimeraX-ListInfo: 1.0
ChimeraX-Log: 1.1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Map: 1.0.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.0
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 1.1
ChimeraX-MDcrds: 2.0
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.0
ChimeraX-mmCIF: 2.2
ChimeraX-MMTF: 2.0
ChimeraX-Modeller: 1.0
ChimeraX-ModelPanel: 1.0
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.0
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0
ChimeraX-OpenCommand: 1.2.1
ChimeraX-PDB: 2.1
ChimeraX-PDBBio: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0
ChimeraX-PubChem: 2.0
ChimeraX-Read-Pbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.2
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SeqView: 2.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.0
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.0.4
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.0
ChimeraX-ToolshedUtils: 1.0
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.2.3
ChimeraX-uniprot: 2.0
ChimeraX-ViewDockX: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.3
comtypes: 1.1.7
cxservices: 1.0
cycler: 0.10.0
Cython: 0.29.20
decorator: 4.4.2
distlib: 0.3.1
docutils: 0.16
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 2.10.0
html2text: 2020.1.16
idna: 2.10
ihm: 0.16
imagecodecs: 2020.5.30
imagecodecs-lite: 2020.1.31
imagesize: 1.2.0
ipykernel: 5.3.0
ipython: 7.15.0
ipython-genutils: 0.2.0
jedi: 0.17.2
Jinja2: 2.11.2
jupyter-client: 6.1.3
jupyter-core: 4.6.3
kiwisolver: 1.2.0
line-profiler: 2.1.2
lxml: 4.5.1
MarkupSafe: 1.1.1
matplotlib: 3.2.1
msgpack: 1.0.0
netifaces: 0.10.9
networkx: 2.4
numexpr: 2.7.1
numpy: 1.18.5
numpydoc: 1.0.0
openvr: 1.12.501
packaging: 20.4
parso: 0.7.1
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 7.1.2
pip: 20.2.2
pkginfo: 1.5.0.1
prompt-toolkit: 3.0.7
psutil: 5.7.0
ptyprocess: 0.6.0
pycollada: 0.7.1
pydicom: 2.0.0
Pygments: 2.6.1
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 2.4.7
PyQt5-commercial: 5.12.3
PyQt5-sip: 4.19.19
PyQtWebEngine-commercial: 5.12.1
python-dateutil: 2.8.1
pytz: 2020.1
pyzmq: 19.0.2
qtconsole: 4.7.4
QtPy: 1.9.0
RandomWords: 0.3.0
requests: 2.24.0
scipy: 1.4.1
setuptools: 49.4.0
sfftk-rw: 0.6.6.dev0
six: 1.15.0
snowballstemmer: 2.0.0
sortedcontainers: 2.2.2
Sphinx: 3.1.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 1.0.3
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.4
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2020.6.3
tinyarray: 1.2.2
tornado: 6.0.4
traitlets: 5.0.4
urllib3: 1.25.10
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.34.2
Change History (2)
comment:1 by , 5 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Graphics hardware encountered an error and was reset |
comment:2 by , 5 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
Mac crash report says
"Graphics hardware encountered an error and was reset: 0x00000813"
This is a common Mac Intel graphics driver error due to some graphics driver bug. I suspect it is related to large scenes that use lot of graphics memory. It is not likely that Apple will fix this OpenGL driver bug since they use only their own proprietary Metal graphics library.
Note:
See TracTickets
for help on using tickets.
Reported by Aditi Chitre