![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#2822 closed defect (can't reproduce)
Write PDB: out-of-range on a string
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-06-06)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here>
Trying to save pdb file shoots down the app.
Process: ChimeraX [5729]
Path: /Applications/ChimeraX-0.9.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.9.0 (0.9.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [5729]
User ID: 503
Date/Time: 2020-02-07 13:20:15.788 +0100
OS Version: Mac OS X 10.13.6 (17G11023)
Report Version: 12
Anonymous UUID: C8F34856-5828-9F23-78F2-E1D893424578
Time Awake Since Boot: 97000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_CRASH (SIGABRT)
Exception Codes: 0x0000000000000000, 0x0000000000000000
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
terminating with uncaught exception of type std::out_of_range: basic_string
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff7ab50b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff7ad1b080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff7aa5e6fe raise + 26
3 libsystem_platform.dylib 0x00007fff7ad0ef5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 libsystem_c.dylib 0x00007fff7aaac1ae abort + 127
6 libc++abi.dylib 0x00007fff789a3f8f abort_message + 245
7 libc++abi.dylib 0x00007fff789a4113 default_terminate_handler() + 241
8 libobjc.A.dylib 0x00007fff79de4eab _objc_terminate() + 105
9 libc++abi.dylib 0x00007fff789bf7c9 std::__terminate(void (*)()) + 8
10 libc++abi.dylib 0x00007fff789bf26f __cxa_throw + 121
11 libc++.1.dylib 0x00007fff78985e11 std::__1::__basic_string_common::__throw_out_of_range() const + 71
12 libc++.1.dylib 0x00007fff78986913 std::__1::basic_string, std::__1::allocator >::basic_string(std::__1::basic_string, std::__1::allocator > const&, unsigned long, unsigned long, std::__1::allocator const&) + 187
13 _pdbio.cpython-37m-darwin.so 0x0000000123d12767 write_pdb(std::__1::vector >, std::__1::basic_ostream >&, bool, bool, std::__1::vector >&, bool, bool, bool, std::__1::set, std::__1::allocator >, std::__1::less, std::__1::allocator > >, std::__1::allocator, std::__1::allocator > > > const&) + 11207
14 _pdbio.cpython-37m-darwin.so 0x0000000123d0f133 write_pdb_file + 3731
15 org.python.python 0x0000000101de43ab _PyMethodDef_RawFastCallKeywords + 251
16 org.python.python 0x0000000101de393c _PyCFunction_FastCallKeywords + 44
17 org.python.python 0x0000000101ead209 call_function + 617
18 org.python.python 0x0000000101ea58da _PyEval_EvalFrameDefault + 5562
19 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
20 org.python.python 0x0000000101de38f6 _PyFunction_FastCallKeywords + 230
21 org.python.python 0x0000000101ead271 call_function + 721
22 org.python.python 0x0000000101ea5a09 _PyEval_EvalFrameDefault + 5865
23 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
24 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
25 org.python.python 0x0000000101ea5c45 _PyEval_EvalFrameDefault + 6437
26 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
27 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
28 org.python.python 0x0000000101de4886 _PyObject_Call_Prepend + 150
29 org.python.python 0x0000000101de3a58 PyObject_Call + 136
30 org.python.python 0x0000000101ea5c45 _PyEval_EvalFrameDefault + 6437
31 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
32 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
33 org.python.python 0x0000000101ea5c45 _PyEval_EvalFrameDefault + 6437
34 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
35 org.python.python 0x0000000101de38f6 _PyFunction_FastCallKeywords + 230
36 org.python.python 0x0000000101ead271 call_function + 721
37 org.python.python 0x0000000101ea58c0 _PyEval_EvalFrameDefault + 5536
38 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
39 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
40 org.python.python 0x0000000101de4886 _PyObject_Call_Prepend + 150
41 org.python.python 0x0000000101de3a58 PyObject_Call + 136
42 QtCore.so 0x000000010f991828 PyQtSlot::call(_object*, _object*) const + 40
43 QtCore.so 0x000000010f991727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
44 QtCore.so 0x000000010f992268 PyQtSlotProxy::unislot(void**) + 88
45 QtCore.so 0x000000010f9921da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
46 QtCore 0x000000010f4f93d6 QMetaObject::activate(QObject*, int, int, void**) + 2230
47 QtCore 0x000000010f4f96aa QMetaObject::activate(QObject*, int, int, void**) + 2954
48 QtWidgets 0x000000010e99c12e QWidgetLineControl::processKeyEvent(QKeyEvent*) + 334
49 QtWidgets 0x000000010e992d72 QLineEdit::keyPressEvent(QKeyEvent*) + 34
50 QtWidgets 0x000000010e87fcfb QWidget::event(QEvent*) + 587
51 QtWidgets 0x000000010e992187 QLineEdit::event(QEvent*) + 599
52 QtWidgets 0x000000010e95a1f6 QComboBox::keyPressEvent(QKeyEvent*) + 838
53 QtWidgets.so 0x000000010e4f88f9 meth_QComboBox_keyPressEvent(_object*, _object*) + 137
54 org.python.python 0x0000000101de43ab _PyMethodDef_RawFastCallKeywords + 251
55 org.python.python 0x0000000101de393c _PyCFunction_FastCallKeywords + 44
56 org.python.python 0x0000000101ead209 call_function + 617
57 org.python.python 0x0000000101ea58da _PyEval_EvalFrameDefault + 5562
58 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
59 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
60 org.python.python 0x0000000101de4886 _PyObject_Call_Prepend + 150
61 org.python.python 0x0000000101de3a58 PyObject_Call + 136
62 sip.so 0x000000010f86134a call_method + 76
63 sip.so 0x000000010f85d284 sip_api_call_procedure_method + 152
64 QtWidgets.so 0x000000010e3fd6d7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
65 QtWidgets 0x000000010e87fcfb QWidget::event(QEvent*) + 587
66 QtWidgets 0x000000010e959b25 QComboBox::event(QEvent*) + 373
67 QtWidgets.so 0x000000010e3fcbe0 sipQComboBox::event(QEvent*) + 192
68 QtWidgets 0x000000010e845b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
69 QtWidgets 0x000000010e846feb QApplication::notify(QObject*, QEvent*) + 715
70 QtWidgets.so 0x000000010e417f8a sipQApplication::notify(QObject*, QEvent*) + 234
71 QtCore 0x000000010f4c8a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
72 QtWidgets 0x000000010e89ec96 0x10e834000 + 437398
73 QtWidgets 0x000000010e845b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
74 QtWidgets 0x000000010e846e9f QApplication::notify(QObject*, QEvent*) + 383
75 QtWidgets.so 0x000000010e417f8a sipQApplication::notify(QObject*, QEvent*) + 234
76 QtCore 0x000000010f4c8a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
77 QtGui 0x000000010ee11c35 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 165
78 QtGui 0x000000010edf728b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155
79 QtGui 0x000000010edf3060 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 576
80 libqcocoa.dylib 0x0000000117b077db 0x117ae6000 + 137179
81 libqcocoa.dylib 0x0000000117b079a8 0x117ae6000 + 137640
82 com.apple.AppKit 0x00007fff5098943d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 5040
83 com.apple.AppKit 0x00007fff50987c70 -[NSWindow(NSEventRouting) sendEvent:] + 497
84 libqcocoa.dylib 0x0000000117af5377 0x117ae6000 + 62327
85 libqcocoa.dylib 0x0000000117af4c34 0x117ae6000 + 60468
86 com.apple.AppKit 0x00007fff507e9236 -[NSApplication(NSEvent) sendEvent:] + 2462
87 libqcocoa.dylib 0x0000000117b10d5a 0x117ae6000 + 175450
88 com.apple.AppKit 0x00007fff5004987d -[NSApplication run] + 812
89 libqcocoa.dylib 0x0000000117b0d53d 0x117ae6000 + 161085
90 QtCore 0x000000010f4c4742 QEventLoop::exec(QFlags) + 418
91 QtCore 0x000000010f4c9172 QCoreApplication::exec() + 402
92 QtWidgets.so 0x000000010e505dc2 meth_QApplication_exec_(_object*, _object*) + 82
93 org.python.python 0x0000000101de43ab _PyMethodDef_RawFastCallKeywords + 251
94 org.python.python 0x0000000101de393c _PyCFunction_FastCallKeywords + 44
95 org.python.python 0x0000000101ead209 call_function + 617
96 org.python.python 0x0000000101ea58da _PyEval_EvalFrameDefault + 5562
97 org.python.python 0x0000000101de3df3 function_code_fastcall + 195
98 org.python.python 0x0000000101ead271 call_function + 721
99 org.python.python 0x0000000101ea58da _PyEval_EvalFrameDefault + 5562
100 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
101 org.python.python 0x0000000101de38f6 _PyFunction_FastCallKeywords + 230
102 org.python.python 0x0000000101ead271 call_function + 721
103 org.python.python 0x0000000101ea596b _PyEval_EvalFrameDefault + 5707
104 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
105 org.python.python 0x0000000101ea4280 PyEval_EvalCode + 48
106 org.python.python 0x0000000101ea19c3 builtin_exec + 563
107 org.python.python 0x0000000101de455e _PyMethodDef_RawFastCallKeywords + 686
108 org.python.python 0x0000000101de393c _PyCFunction_FastCallKeywords + 44
109 org.python.python 0x0000000101ead209 call_function + 617
110 org.python.python 0x0000000101ea596b _PyEval_EvalFrameDefault + 5707
111 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
112 org.python.python 0x0000000101de38f6 _PyFunction_FastCallKeywords + 230
113 org.python.python 0x0000000101ead271 call_function + 721
114 org.python.python 0x0000000101ea596b _PyEval_EvalFrameDefault + 5707
115 org.python.python 0x0000000101eade81 _PyEval_EvalCodeWithName + 2721
116 org.python.python 0x0000000101de33d2 _PyFunction_FastCallDict + 450
117 org.python.python 0x0000000101f024c3 pymain_run_module + 147
118 org.python.python 0x0000000101f012d6 pymain_main + 4262
119 org.python.python 0x0000000101f00223 Py_Main + 51
120 edu.ucsf.cgl.ChimeraX 0x0000000101dbedcb main + 587
121 libdyld.dylib 0x00007fff7aa00015 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff50191fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7ab5209a poll + 10
1 QtCore 0x000000010f51bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010f51d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010f4c4742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000011064cc4a 0x11062b000 + 138314
5 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
6 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
7 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
8 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff7ab51bea kevent + 10
1 QtWebEngineCore 0x0000000111759469 0x11062b000 + 18015337
2 QtWebEngineCore 0x000000011175675d 0x11062b000 + 18003805
3 QtWebEngineCore 0x000000011124a99f 0x11062b000 + 12712351
4 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
5 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
6 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
7 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
8 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 4:: WorkerPool/50179
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad195c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x00000001112842bb 0x11062b000 + 12948155
3 QtWebEngineCore 0x00000001112a26e9 0x11062b000 + 13072105
4 QtWebEngineCore 0x00000001112a2c57 0x11062b000 + 13073495
5 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 5:: WorkerPool/81155
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad195c2 _pthread_cond_wait + 789
2 QtWebEngineCore 0x00000001112842bb 0x11062b000 + 12948155
3 QtWebEngineCore 0x00000001112a26e9 0x11062b000 + 13072105
4 QtWebEngineCore 0x00000001112a2c57 0x11062b000 + 13073495
5 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 6:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x0000000110918958 0x11062b000 + 3070296
10 QtWebEngineCore 0x0000000110918d1f 0x11062b000 + 3071263
11 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
12 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 7:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff7ab51bea kevent + 10
1 QtWebEngineCore 0x0000000111759469 0x11062b000 + 18015337
2 QtWebEngineCore 0x000000011175675d 0x11062b000 + 18003805
3 QtWebEngineCore 0x000000011124a99f 0x11062b000 + 12712351
4 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
5 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
6 QtWebEngineCore 0x00000001109189d8 0x11062b000 + 3070424
7 QtWebEngineCore 0x0000000110918d2f 0x11062b000 + 3071279
8 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
9 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
10 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 8:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x0000000110918a58 0x11062b000 + 3070552
10 QtWebEngineCore 0x0000000110918d3f 0x11062b000 + 3071295
11 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
12 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 9:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x0000000110918ad8 0x11062b000 + 3070680
10 QtWebEngineCore 0x0000000110918d4c 0x11062b000 + 3071308
11 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
12 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 10:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x0000000110918b58 0x11062b000 + 3070808
10 QtWebEngineCore 0x0000000110918d59 0x11062b000 + 3071321
11 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
12 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
13 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 11:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff7ab51bea kevent + 10
1 QtWebEngineCore 0x0000000111759469 0x11062b000 + 18015337
2 QtWebEngineCore 0x000000011175675d 0x11062b000 + 18003805
3 QtWebEngineCore 0x000000011124a986 0x11062b000 + 12712326
4 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
5 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
6 QtWebEngineCore 0x0000000110918bd8 0x11062b000 + 3070936
7 QtWebEngineCore 0x0000000110918d66 0x11062b000 + 3071334
8 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
9 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
10 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 12:: BrowserBlockingWorker1/74499
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011129ac1f 0x11062b000 + 13040671
3 QtWebEngineCore 0x000000011129a2e6 0x11062b000 + 13038310
4 QtWebEngineCore 0x000000011129e18d 0x11062b000 + 13054349
5 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 13:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
10 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 14:: CompositorTileWorker1/72707
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x0000000111e39cf8 0x11062b000 + 25226488
3 QtWebEngineCore 0x000000011129e18d 0x11062b000 + 13054349
4 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
5 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 15:: AudioThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
10 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 16:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff7ab471fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff7ab46714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff52abe5c5 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff52abd917 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff52abcf93 CFRunLoopRunSpecific + 483
5 QtWebEngineCore 0x000000011124b90f 0x11062b000 + 12716303
6 QtWebEngineCore 0x000000011124b2a4 0x11062b000 + 12714660
7 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
8 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
9 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
10 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
11 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 17:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff7ab51bea kevent + 10
1 QtWebEngineCore 0x0000000111759469 0x11062b000 + 18015337
2 QtWebEngineCore 0x000000011175675d 0x11062b000 + 18003805
3 QtWebEngineCore 0x000000011124a99f 0x11062b000 + 12712351
4 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
5 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
6 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
7 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
8 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7ab5209a poll + 10
1 QtCore 0x000000010f51bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010f51d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010f4c4742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000011064cc4a 0x11062b000 + 138314
5 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
6 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
7 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
8 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 19:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 QtCore 0x000000010f30a58b 0x10f2dd000 + 185739
3 QtCore 0x000000010f30a522 QWaitCondition::wait(QMutex*, unsigned long) + 162
4 QtWidgets 0x000000010ea6b862 0x10e834000 + 2324578
5 QtCore 0x000000010f308fbf 0x10f2dd000 + 180159
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7ab5209a poll + 10
1 QtCore 0x000000010f51bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010f51d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010f4c4742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000011064cc4a 0x11062b000 + 138314
5 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
6 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
7 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
8 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 21:
0 libsystem_pthread.dylib 0x00007fff7ad17bdc start_wqthread + 0
1 ??? 0x0000000100000038 0 + 4294967352
Thread 22:
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000102c86a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000102c86a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 24:
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000102c86a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 25:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff7ab5209a poll + 10
1 QtCore 0x000000010f51bb40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010f51d1b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010f4c4742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000011064cc4a 0x11062b000 + 138314
5 QtWebEngineCore 0x000000011124810e 0x11062b000 + 12701966
6 QtWebEngineCore 0x000000011126c531 0x11062b000 + 12850481
7 QtWebEngineCore 0x00000001112a036b 0x11062b000 + 13063019
8 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
9 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 26:: BrowserBlockingWorker2/149763
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011129ac1f 0x11062b000 + 13040671
3 QtWebEngineCore 0x000000011129a2e6 0x11062b000 + 13038310
4 QtWebEngineCore 0x000000011129e18d 0x11062b000 + 13054349
5 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 27:: BrowserBlockingWorker3/107531
0 libsystem_kernel.dylib 0x00007fff7ab50a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff7ad19589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011129ac1f 0x11062b000 + 13040671
3 QtWebEngineCore 0x000000011129a2e6 0x11062b000 + 13038310
4 QtWebEngineCore 0x000000011129e18d 0x11062b000 + 13054349
5 QtWebEngineCore 0x0000000111299667 0x11062b000 + 13035111
6 libsystem_pthread.dylib 0x00007fff7ad18661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff7ad1850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff7ad17bf9 thread_start + 13
Thread 28:
0 libsystem_pthread.dylib 0x00007fff7ad17bdc start_wqthread + 0
1 ??? 0x4058504320000000 0 + 4636544065607827456
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fffb344a380 rcx: 0x0000000102215a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x0000000000000006 rbp: 0x0000000102215a80 rsp: 0x0000000102215a48
r8: 0x0000000102215f48 r9: 0x00007ffeede3c4a0 r10: 0x00007fffb344a3c8 r11: 0x0000000000000206
r12: 0x0000000000000307 r13: 0x0000000000000030 r14: 0x0000000000000006 r15: 0x000000000000002d
rip: 0x00007fff7ab50b66 rfl: 0x0000000000000206 cr2: 0x000000010200c25c
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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0x10c9e2000 - 0x10c9e9ffb +libqicns.dylib (0) /Applications/ChimeraX-0.9.app/Contents/lib/python3.7/site-packages/PyQt5/Qt/plugins/imageformats/libqicns.dylib
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0x10ca96000 - 0x10caaffff +_umath_linalg.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/linalg/_umath_linalg.cpython-37m-darwin.so
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0x10cbe6000 - 0x10cc1eff7 +_decimal.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/lib-dynload/_decimal.cpython-37m-darwin.so
0x10cc3d000 - 0x10cc46fff +fftpack_lite.cpython-37m-darwin.so (0) /Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-packages/numpy/fft/fftpack_lite.cpython-37m-darwin.so
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0x7fff7aa36000 - 0x7fff7aa4dfff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff7aa4e000 - 0x7fff7aa4efff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff7aa4f000 - 0x7fff7aad8ff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff7aad9000 - 0x7fff7aadcffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib
0x7fff7aadd000 - 0x7fff7aae0ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff7aae1000 - 0x7fff7aae2fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff7aae3000 - 0x7fff7aae9ffb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib
0x7fff7aaea000 - 0x7fff7ab33ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff7ab34000 - 0x7fff7ab5aff7 libsystem_kernel.dylib (4570.71.69) /usr/lib/system/libsystem_kernel.dylib
0x7fff7ab5b000 - 0x7fff7aba6fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff7aba7000 - 0x7fff7abc6ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib
0x7fff7abc7000 - 0x7fff7acf7ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff7acf8000 - 0x7fff7ad02ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff7ad03000 - 0x7fff7ad0cff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff7ad0d000 - 0x7fff7ad14ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff7ad15000 - 0x7fff7ad20fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff7ad21000 - 0x7fff7ad24fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff7ad25000 - 0x7fff7ad26ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff7ad27000 - 0x7fff7ad2eff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff7ad2f000 - 0x7fff7ad43ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib
0x7fff7ad45000 - 0x7fff7ad4aff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff7ad4b000 - 0x7fff7ad78fff libxpc.dylib (1205.70.15) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 4
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 56049
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=625.7M resident=0K(0%) swapped_out_or_unallocated=625.7M(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 5
Activity Tracing 256K 2
CG backing stores 8896K 10
CG image 236K 32
CoreAnimation 616K 74
CoreGraphics 8K 2
CoreImage 188K 46
CoreServices 5120K 2
CoreUI image data 3052K 37
CoreUI image file 368K 7
Foundation 4K 2
Image IO 20K 3
Kernel Alloc Once 8K 2
MALLOC 716.9M 207
MALLOC guard page 48K 12
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 36K 3
OpenGL GLSL 512K 7
STACK GUARD 112K 29
Stack 179.7M 30
Stack Guard 56.0M 2
VM_ALLOCATE 267.2M 278
VM_ALLOCATE (reserved) 32.0M 2 reserved VM address space (unallocated)
__DATA 45.3M 468
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 212.2M 121
__TEXT 413.5M 447
__UNICODE 560K 2
mapped file 73.3M 59
shared memory 760K 15
=========== ======= =======
TOTAL 2.0G 1882
TOTAL, minus reserved VM space 1.9G 1882
Log:
UCSF ChimeraX version: 0.9 (2019-06-06)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-10.36.26
OpenGL renderer: Intel Iris Pro OpenGL Engine
OpenGL vendor: Intel Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Write PDB: out-of-range on a string |
comment:2 by , 6 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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Would need a session file (also, version is 0.9)