Opened 6 years ago

Last modified 6 years ago

#2813 assigned defect

SideVIew self.view.render is None

Reported by: chimerax-bug-report@… Owned by: Greg Couch
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-4.4.0-173-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.91 (2019-06-29)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.91 (2019-06-29)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /data/disk3/modeling/gp10/capsid-tail-20200204.cxs

opened ChimeraX session  

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!1 models

> surface dust #7 size 50

> surface dust #31 size 50

> lighting soft

> lighting soft

> lighting simple

> select clear

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!7 models

> show #!7 models

> hide #!23 models

> show #!23 models

> surface dust #23 size 50

> surface dust #26 size 50

> hide #!7 models

> show #!7 models

> hide #!11.1 models

> show #!11.1 models

> hide #!11.1 models

> hide #!11 models

> show #!11 models

> show #!11.1 models

> hide #!11 models

> show #!11 models

> surface dust #11 size 50

> hide #!7 models

> show #!7 models

> hide #!11.1 models

> hide #!11 models

> lighting soft

> lighting full

> lighting shadows false

> lighting flat

> lighting full

> lighting simple

> lighting shadows true

> lighting full

> lighting soft

> lighting flat

> set silhouettes false

> set silhouettes true

> lighting shadows true intensity 0.5

> lighting simple

> lighting full

> lighting soft

> lighting shadows true intensity 0.5

> lighting soft

> lighting shadows true intensity 0.5

> lighting full

> lighting soft

> lighting simple

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting simple

> surface dust #23 size 50

> surface dust #23 size 10

> surface dust #31 size 50

> surface dust #31 size 30

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> lighting soft

> lighting shadows true intensity 0.5

> lighting full

> lighting soft

> lighting simple

> lighting flat

> lighting full

> lighting soft

> lighting simple

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> surface dust #31 size 100

> surface dust #31 size 50

> lighting flat

> select clear

> lighting simple

> lighting soft

> lighting full

> lighting shadows false

> lighting full

> lighting soft

> lighting flat

> lighting simple

> select clear

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  

> select up

Nothing selected  

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!6 models

> hide #!6 models

> show #!11 models

> show #!11.1 models

> zoom 0.5

> save image /data/disk3/Paper-use/Figure1-20200205-2.tif pixelSize 0.1
supersample 10 transparentBackground true

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  

> save image /data/disk3/Paper-use/Figure1-20200205-2.tif pixelSize 0.1
supersample 10 transparentBackground true

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  

> save image /data/disk3/Paper-use/Figure1-20200205-3.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!23 models

> show #!23 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> show #!11 models

> transparency #11 70

> transparency #11 40

> transparency #11 0

> hide #!23 models

> show #!23 models

> hide #!23 models

> show #!23 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> hide #!23 models

> show #!23 models

> hide #!23 models

> show #!23 models

> transparency #23 70

> transparency #7 70

> lighting soft

> toolshed show "Side View"

> hide #!9 models

> hide #!7 models

> show #!7 models

> hide #!15 models

> hide #!16 models

> hide #!17 models

> hide #!19 models

> ui mousemode rightMode "rotate selected models"

> view cofr false

> lighting simple

> lighting soft

> lighting flat

> lighting full

> lighting soft

> lighting full

> lighting soft

> hide #!11 models

> show #!11 models

> hide #!23 models

> hide #!7 models

> show #!10 models

> hide #!10 models

> hide #!26 models

> save image /data/disk3/Paper-use/Figure1-20200205-4.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!26 models

> lighting soft

> save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting soft

> lighting simple

> save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1
supersample 10 transparentBackground true

> view name portal

> show #!23 models

> view name gp8

> view name gp8

> save image /data/disk3/Paper-use/Figure1-20200205-4.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!7 models

> select clear

> save image /data/disk3/Paper-use/Figure1-20200205-6.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-6.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting flat

> lighting soft

> lighting soft

> lighting flat

> lighting simple

> lighting soft

> lighting simple

Expected an objects specifier or a view name or a keyword  

> show #!13 models

> hide #!13 models

> show #!9 models

> hide #!9 models

> show #!4 models

> hide #!4 models

> show #!177 models

> hide #!177 models

> hide #!7 models

> show #!7 models

> save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> hide #!31 models

> show #!31 models

> hide #!23 models

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure2-20200205-2.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting full

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting soft

> lighting soft

> lighting simple

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting full

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting soft

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> save image /data/disk3/Paper-use/Figure2-20200205-2.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!17 models

> hide #!16 models

> hide #!15 models

> hide #!19 models

> hide #!9 models

> show #!23 models

> show #!27 models

> show #!7 models

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  

> lighting soft

> lighting simple

> lighting soft

> lighting shadows true intensity 0.5

> lighting full

> lighting soft

> lighting soft

> lighting soft

> show #!9 models

> hide #!9 models

> save image /data/disk3/Paper-use/Figure2-20200205-3.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!5 models

> hide #!31 models

> show #!31 models

> select #31

3 models selected  

> ~select #31

Nothing selected  

> hide #!31 models

> select #5

49008 atoms, 49740 bonds, 1 model selected  

> show selAtoms ribbons

> select clear

> ui mousemode rightMode "translate selected models"

> lighting soft

> lighting simple

> lighting soft

> lighting shadows true intensity 0.5

> lighting full

> lighting soft

> show #!31 models

> hide #!31 models

> show #!31 models

> transparency #31 70

> transparency #31 50

> select clear

> select clear

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> show #!26 models

> show #!14 models

> hide #!14 models

> show #!3 models

> hide #!3 models

> show #!14 models

> select #14

76410 atoms, 77460 bonds, 3 models selected  

> show selAtoms ribbons

> select clear

> hide #!11 models

> show #!11 models

> show #!13 models

> hide #!13 models

> show #!13 models

> hide #!23 models

> hide #!14 models

> hide #!7 models

> surface dust #13 size 50

> surface dust #13 size 100

> surface dust #13 size 150

> surface dust #13 size 100

> transparency #13 80

> transparency #13 40

> save image /data/disk3/Paper-use/Figure2-20200205-4.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!11 models

> show #!11 models

> surface dust #13 size 150

> surface dust #13 size 200

> surface dust #13 size 300

> surface dust #13 size 500

> surface dust #13 size 400

> surface dust #13 size 300

> hide #!5 models

> save image /data/disk3/Paper-use/Figure2-20200205-4.tif pixelSize 0.1
supersample 10 transparentBackground true

> hide #!11 models

> show #!11 models

> hide #!11 models

> hide #!13 models

> show #!13 models

> hide #!13 models

> show #!13 models

> hide #!11.1 models

> hide #!31 models

> hide #!26 models

> show #!26 models

> hide #!26 models

> hide #!27 models

> show #!27 models

> hide #!27 models

> save image /data/disk3/Paper-use/Figure2-20200205-5.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!11 models

> show #!11.1 models

> select up

Nothing selected  

> transparency #13 40

> lighting flat

> show #!26 models

> hide #!26 models

> show #!31 models

> lighting soft

> show #!26 models

> hide #!26 models

> lighting flat

> lighting full

> lighting simple

> lighting simple

> lighting soft

> save image /data/disk3/Paper-use/Figure2-20200205-6.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting flat

> show #!29 models

> hide #!13 models

> hide #!29 models

> lighting soft

> open /data/disk3/modeling/gp8/gp8-C12-clean.mrc

Opened gp8-C12-clean.mrc, grid size 400,400,400, pixel 1.05, shown at level
-4.87e-06, step 2, values float32  

> hide #!11 models

> hide #!11.1 models

> lighting flat

> hide #!20 models

> show #!20 models

> select #20

2 models selected  

> ui mousemode rightMode "translate selected models"

> hide #!20 models

> show #!20 models

> ui mousemode rightMode "translate selected models"

> hide #!20 models

> show #!20 models

> ui mousemode rightMode "translate selected models"

> ui mousemode rightMode "rotate selected models"

> hide #!20 models

> show #!20 models

> fitmap #20 inMap #31

Fit map gp8-C12-clean.mrc in map gp8-Res2.9-clean.mrc using 28724 points  
correlation = 0.9108, correlation about mean = 0.7448, overlap = 15.77  
steps = 104, shift = 2.16, angle = 7.73 degrees  
  
Position of gp8-C12-clean.mrc (#20) relative to gp8-Res2.9-clean.mrc (#31)
coordinates:  
Matrix rotation and translation  
-0.40431498 0.91461981 -0.00002575 102.83950342  
0.91461981 0.40431498 0.00006074 -66.98431350  
0.00006596 0.00000101 -1.00000000 420.15908783  
Axis -0.54577749 -0.83793015 -0.00001475  
Axis point 73.22767612 0.00000000 210.08181233  
Rotation angle (degrees) 179.99686465  
Shift along axis -0.00550679  
  

> show #!30 models

> hide #!30 models

> show #!26 models

> show #!11 models

> show #!11.1 models

> hide #!31 models

> select clear

> lighting flat

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> lighting soft

> show #!1 models

> surface dust #1 size 400

> surface dust #1 size 40

> hide #!20 models

> show #!20 models

> hide #!26 models

> show #!26 models

> hide #!1 models

> hide #!26 models

> show #!26 models

> lighting flat

> zoom 0.5

> lighting flat

> lighting soft

> hide #!20 models

> show #!20 models

> hide #!26 models

> show #!26 models

> surface dust #26 size 40

> surface dust #26 size 80

> surface dust #26 size 60

> surface dust #26 size 70

> hide #!26 models

> show #!26 models

> hide #!20 models

> show #!20 models

> surface dust #20 size 70

> show #!11 models

> hide #!11 models

> show #!11 models

> show #!23 models

> show #!7 models

> hide #!11 models

> select clear

> lighting flat

> lighting flat

> lighting soft

> lighting simple

> lighting shadows true

> lighting flat

> lighting full

> lighting soft

> lighting simple

> lighting soft

> lighting simple

> select clear

> lighting flat

> lighting soft

> lighting simple

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> show #!11 models

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting soft

> lighting soft

> lighting soft

> lighting simple

> lighting soft

> lighting soft

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

> lighting flat

> lighting soft

> lighting flat

> lighting soft

> lighting shadows true intensity 0.5

> lighting full

> lighting soft

> view name 1

> save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1
supersample 10 transparentBackground true

Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 116, in exposeEvent  
self.render()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 139, in render  
mvwin = self.view.render.use_shared_context(self, width, height)  
AttributeError: 'NoneType' object has no attribute 'use_shared_context'  
  
AttributeError: 'NoneType' object has no attribute 'use_shared_context'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 139, in render  
mvwin = self.view.render.use_shared_context(self, width, height)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 116, in exposeEvent  
self.render()  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 139, in render  
mvwin = self.view.render.use_shared_context(self, width, height)  
AttributeError: 'NoneType' object has no attribute 'use_shared_context'  
  
AttributeError: 'NoneType' object has no attribute 'use_shared_context'  
  
File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-
packages/chimerax/sideview/tool.py", line 139, in render  
mvwin = self.view.render.use_shared_context(self, width, height)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 384.130
OpenGL renderer: Quadro K2200/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (1)

comment:1 by Eric Pettersen, 6 years ago

Cc: Tom Goddard added
Component: UnassignedGraphics
Owner: set to Greg Couch
Platform: all
Project: ChimeraX
Status: newassigned
Summary: ChimeraX bug report submissionSideVIew self.view.render is None
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