Opened 6 years ago
Last modified 6 years ago
#2813 assigned defect
SideVIew self.view.render is None
Reported by: | Owned by: | Greg Couch | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Graphics | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-4.4.0-173-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.91 (2019-06-29) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.91 (2019-06-29) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /data/disk3/modeling/gp10/capsid-tail-20200204.cxs opened ChimeraX session > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!1 models > surface dust #7 size 50 > surface dust #31 size 50 > lighting soft > lighting soft > lighting simple > select clear > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!7 models > show #!7 models > hide #!23 models > show #!23 models > surface dust #23 size 50 > surface dust #26 size 50 > hide #!7 models > show #!7 models > hide #!11.1 models > show #!11.1 models > hide #!11.1 models > hide #!11 models > show #!11 models > show #!11.1 models > hide #!11 models > show #!11 models > surface dust #11 size 50 > hide #!7 models > show #!7 models > hide #!11.1 models > hide #!11 models > lighting soft > lighting full > lighting shadows false > lighting flat > lighting full > lighting simple > lighting shadows true > lighting full > lighting soft > lighting flat > set silhouettes false > set silhouettes true > lighting shadows true intensity 0.5 > lighting simple > lighting full > lighting soft > lighting shadows true intensity 0.5 > lighting soft > lighting shadows true intensity 0.5 > lighting full > lighting soft > lighting simple > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting simple > surface dust #23 size 50 > surface dust #23 size 10 > surface dust #31 size 50 > surface dust #31 size 30 > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > lighting soft > lighting shadows true intensity 0.5 > lighting full > lighting soft > lighting simple > lighting flat > lighting full > lighting soft > lighting simple > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > surface dust #31 size 100 > surface dust #31 size 50 > lighting flat > select clear > lighting simple > lighting soft > lighting full > lighting shadows false > lighting full > lighting soft > lighting flat > lighting simple > select clear internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window > select up Nothing selected > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!6 models > hide #!6 models > show #!11 models > show #!11.1 models > zoom 0.5 > save image /data/disk3/Paper-use/Figure1-20200205-2.tif pixelSize 0.1 supersample 10 transparentBackground true internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window > save image /data/disk3/Paper-use/Figure1-20200205-2.tif pixelSize 0.1 supersample 10 transparentBackground true internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window > save image /data/disk3/Paper-use/Figure1-20200205-3.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!23 models > show #!23 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!11 models > show #!11 models > hide #!11 models > show #!11 models > transparency #11 70 > transparency #11 40 > transparency #11 0 > hide #!23 models > show #!23 models > hide #!23 models > show #!23 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!23 models > show #!23 models > hide #!23 models > show #!23 models > transparency #23 70 > transparency #7 70 > lighting soft > toolshed show "Side View" > hide #!9 models > hide #!7 models > show #!7 models > hide #!15 models > hide #!16 models > hide #!17 models > hide #!19 models > ui mousemode rightMode "rotate selected models" > view cofr false > lighting simple > lighting soft > lighting flat > lighting full > lighting soft > lighting full > lighting soft > hide #!11 models > show #!11 models > hide #!23 models > hide #!7 models > show #!10 models > hide #!10 models > hide #!26 models > save image /data/disk3/Paper-use/Figure1-20200205-4.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!26 models > lighting soft > save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting soft > lighting simple > save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-5.tif pixelSize 0.1 supersample 10 transparentBackground true > view name portal > show #!23 models > view name gp8 > view name gp8 > save image /data/disk3/Paper-use/Figure1-20200205-4.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!7 models > select clear > save image /data/disk3/Paper-use/Figure1-20200205-6.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-6.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting flat > lighting soft > lighting soft > lighting flat > lighting simple > lighting soft > lighting simple Expected an objects specifier or a view name or a keyword > show #!13 models > hide #!13 models > show #!9 models > hide #!9 models > show #!4 models > hide #!4 models > show #!177 models > hide #!177 models > hide #!7 models > show #!7 models > save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-7.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!7 models > show #!7 models > hide #!7 models > show #!7 models > hide #!7 models > hide #!31 models > show #!31 models > hide #!23 models > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure2-20200205-2.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting full > lighting full > lighting simple > lighting soft > lighting full > lighting soft > lighting soft > lighting simple > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > lighting full > lighting shadows false > lighting shadows true > lighting shadows false > lighting soft > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > lighting shadows true > lighting shadows false > save image /data/disk3/Paper-use/Figure2-20200205-2.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!17 models > hide #!16 models > hide #!15 models > hide #!19 models > hide #!9 models > show #!23 models > show #!27 models > show #!7 models internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window > lighting soft > lighting simple > lighting soft > lighting shadows true intensity 0.5 > lighting full > lighting soft > lighting soft > lighting soft > show #!9 models > hide #!9 models > save image /data/disk3/Paper-use/Figure2-20200205-3.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!5 models > hide #!31 models > show #!31 models > select #31 3 models selected > ~select #31 Nothing selected > hide #!31 models > select #5 49008 atoms, 49740 bonds, 1 model selected > show selAtoms ribbons > select clear > ui mousemode rightMode "translate selected models" > lighting soft > lighting simple > lighting soft > lighting shadows true intensity 0.5 > lighting full > lighting soft > show #!31 models > hide #!31 models > show #!31 models > transparency #31 70 > transparency #31 50 > select clear > select clear > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > hide #!26 models > show #!26 models > show #!14 models > hide #!14 models > show #!3 models > hide #!3 models > show #!14 models > select #14 76410 atoms, 77460 bonds, 3 models selected > show selAtoms ribbons > select clear > hide #!11 models > show #!11 models > show #!13 models > hide #!13 models > show #!13 models > hide #!23 models > hide #!14 models > hide #!7 models > surface dust #13 size 50 > surface dust #13 size 100 > surface dust #13 size 150 > surface dust #13 size 100 > transparency #13 80 > transparency #13 40 > save image /data/disk3/Paper-use/Figure2-20200205-4.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!11 models > show #!11 models > surface dust #13 size 150 > surface dust #13 size 200 > surface dust #13 size 300 > surface dust #13 size 500 > surface dust #13 size 400 > surface dust #13 size 300 > hide #!5 models > save image /data/disk3/Paper-use/Figure2-20200205-4.tif pixelSize 0.1 supersample 10 transparentBackground true > hide #!11 models > show #!11 models > hide #!11 models > hide #!13 models > show #!13 models > hide #!13 models > show #!13 models > hide #!11.1 models > hide #!31 models > hide #!26 models > show #!26 models > hide #!26 models > hide #!27 models > show #!27 models > hide #!27 models > save image /data/disk3/Paper-use/Figure2-20200205-5.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!11 models > show #!11.1 models > select up Nothing selected > transparency #13 40 > lighting flat > show #!26 models > hide #!26 models > show #!31 models > lighting soft > show #!26 models > hide #!26 models > lighting flat > lighting full > lighting simple > lighting simple > lighting soft > save image /data/disk3/Paper-use/Figure2-20200205-6.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting flat > show #!29 models > hide #!13 models > hide #!29 models > lighting soft > open /data/disk3/modeling/gp8/gp8-C12-clean.mrc Opened gp8-C12-clean.mrc, grid size 400,400,400, pixel 1.05, shown at level -4.87e-06, step 2, values float32 > hide #!11 models > hide #!11.1 models > lighting flat > hide #!20 models > show #!20 models > select #20 2 models selected > ui mousemode rightMode "translate selected models" > hide #!20 models > show #!20 models > ui mousemode rightMode "translate selected models" > hide #!20 models > show #!20 models > ui mousemode rightMode "translate selected models" > ui mousemode rightMode "rotate selected models" > hide #!20 models > show #!20 models > fitmap #20 inMap #31 Fit map gp8-C12-clean.mrc in map gp8-Res2.9-clean.mrc using 28724 points correlation = 0.9108, correlation about mean = 0.7448, overlap = 15.77 steps = 104, shift = 2.16, angle = 7.73 degrees Position of gp8-C12-clean.mrc (#20) relative to gp8-Res2.9-clean.mrc (#31) coordinates: Matrix rotation and translation -0.40431498 0.91461981 -0.00002575 102.83950342 0.91461981 0.40431498 0.00006074 -66.98431350 0.00006596 0.00000101 -1.00000000 420.15908783 Axis -0.54577749 -0.83793015 -0.00001475 Axis point 73.22767612 0.00000000 210.08181233 Rotation angle (degrees) 179.99686465 Shift along axis -0.00550679 > show #!30 models > hide #!30 models > show #!26 models > show #!11 models > show #!11.1 models > hide #!31 models > select clear > lighting flat > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > hide #!11 models > show #!11 models > hide #!11 models > lighting soft > show #!1 models > surface dust #1 size 400 > surface dust #1 size 40 > hide #!20 models > show #!20 models > hide #!26 models > show #!26 models > hide #!1 models > hide #!26 models > show #!26 models > lighting flat > zoom 0.5 > lighting flat > lighting soft > hide #!20 models > show #!20 models > hide #!26 models > show #!26 models > surface dust #26 size 40 > surface dust #26 size 80 > surface dust #26 size 60 > surface dust #26 size 70 > hide #!26 models > show #!26 models > hide #!20 models > show #!20 models > surface dust #20 size 70 > show #!11 models > hide #!11 models > show #!11 models > show #!23 models > show #!7 models > hide #!11 models > select clear > lighting flat > lighting flat > lighting soft > lighting simple > lighting shadows true > lighting flat > lighting full > lighting soft > lighting simple > lighting soft > lighting simple > select clear > lighting flat > lighting soft > lighting simple > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure1-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > show #!11 models > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting soft > lighting soft > lighting soft > lighting simple > lighting soft > lighting soft > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true > lighting flat > lighting soft > lighting flat > lighting soft > lighting shadows true intensity 0.5 > lighting full > lighting soft > view name 1 > save image /data/disk3/Paper-use/Figure2-20200205-1.tif pixelSize 0.1 supersample 10 transparentBackground true Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 116, in exposeEvent self.render() File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) AttributeError: 'NoneType' object has no attribute 'use_shared_context' AttributeError: 'NoneType' object has no attribute 'use_shared_context' File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) See log for complete Python traceback. Traceback (most recent call last): File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 116, in exposeEvent self.render() File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) AttributeError: 'NoneType' object has no attribute 'use_shared_context' AttributeError: 'NoneType' object has no attribute 'use_shared_context' File "/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/sideview/tool.py", line 139, in render mvwin = self.view.render.use_shared_context(self, width, height) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K2200/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation
Change History (1)
comment:1 by , 6 years ago
Cc: | added |
---|---|
Component: | Unassigned → Graphics |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → SideVIew self.view.render is None |
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