Opened 6 years ago

Closed 6 years ago

#2524 closed defect (duplicate)

Clipper: No module named 'chimerax.core.graphics.clipping'

Reported by: chimerax-bug-report@… Owned by: Conrad Huang
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.16299
ChimeraX Version: 0.9 (2019-06-06)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.9 (2019-06-06)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open H:/lysozyme/class/Coot_Example/pheasant_molrep1_refmac1.pdb

Chain information for pheasant_molrep1_refmac1.pdb #1  
---  
Chain | Description  
A | No description available  
  

> style selAtoms ball

Changed 1000 atom styles  

> style selAtoms ball

Changed 1000 atom styles  

> style selAtoms ball

Changed 1000 atom styles  

> show selAtoms

> hide selAtoms ribbons

> style selAtoms stick

Changed 1000 atom styles  

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  

> volume selMaps style mesh

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  

> volume selMaps style mesh

> vop gaussian #2 sdev 1.77

> volume selMaps style mesh

> hide #!3 models

> hide #!2 models

> show #!2 models

> hide #!2.1 models

> show #!2.1 models

> open H:/lysozyme/class/Coot_Example/Lyso1_4_DELFWT.map

Opened Lyso1_4_DELFWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown
at level 0.251, step 1, values float32  

> volume selMaps style mesh

> help help:user

> toolshed show ISOLDE

> set selectionWidth 4

Missing or corrupted CRYST1 card found in the PDB file. This model will be
treated as a cryo-EM model until associated with an MTZ file containing
symmetry information.  

Chain information for pheasant_molrep1_refmac1.pdb  
---  
Chain | Description  
1.3/A | No description available  
  
Done loading forcefield  
Summary of feedback from opening
C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\isolde\demo_data\3io0\before.pdb  
---  
warning | Ignored bad PDB record found on line 3841  
END  
  
before.pdb title:  
Crystal structure of etub from clostridium kluyveri [more info...]  
  
Chain information for before.pdb #4  
---  
Chain | Description  
A | predicted microcompartment protein  
  

Missing or corrupted CRYST1 card found in the PDB file. This model will be
treated as a cryo-EM model until associated with an MTZ file containing
symmetry information.  

before.pdb title:  
Crystal structure of etub from clostridium kluyveri [more info...]  
  
Chain information for before.pdb  
---  
Chain | Description  
4.3/A | predicted microcompartment protein  
  

WARNING: multiple experimental reflection datasets found:  
(dataset) FOBS, SIGFOBS,  
(dataset) IOBS, SIGIOBS,  
(dataset) DANO, SIGDANO,  
(dataset) F(+), SIGF(+), F(-), SIGF(-),  
(dataset) I(+), SIGI(+), I(-), SIGI(-)  
Automatically choosing "(dataset) IOBS, SIGIOBS".  

(CLIPPER) NOTE: No symmetry information found in model. Using symmetry from
MTZ file.  
Reflection data provided as intensities. Performing French & Wilson scaling to
convert to amplitudes...  

> close

Deleting (LIVE) 2mFo-DFc  
Deleting (LIVE) mFo-DFc  
Deleting (LIVE) MDFF potential  
Deleting (LIVE) 2mFo-DFc_sharp_29  
Deleting Crystallographic maps (3io0-sf.mtz)  

> close

> open H:/lysozyme/class/Coot_Example/pheasant_molrep1_refmac1.pdb

Chain information for pheasant_molrep1_refmac1.pdb #1  
---  
Chain | Description  
A | No description available  
  

Missing or corrupted CRYST1 card found in the PDB file. This model will be
treated as a cryo-EM model until associated with an MTZ file containing
symmetry information.  

Chain information for pheasant_molrep1_refmac1.pdb  
---  
Chain | Description  
1.3/A | No description available  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  

> hide selAtoms ribbons

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  

> open H:/lysozyme/class/Coot_Example/Lyso1_4_DELFWT.map

Opened Lyso1_4_DELFWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown
at level 0.251, step 1, values float32  
Traceback (most recent call last):  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\isolde\isolde.py", line 2520, in _xtal_mask_to_selection  
self._xtal_mask_to_atoms(sel, focus)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\isolde\isolde.py", line 2529, in _xtal_mask_to_atoms  
atoms, 0, context, cutoff, focus=focus)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\symmetry.py", line 866, in
isolate_and_cover_selection  
focus_on_selection(self.session, self.session.main_view, atoms)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\symmetry.py", line 1731, in focus_on_selection  
cp.set_clip_position('near', center - radius*vd, v)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\view.py", line 983, in set_clip_position  
normal = camera.position.transform_vector(camera_normal)  
AttributeError: 'View' object has no attribute 'position'  
  
AttributeError: 'View' object has no attribute 'position'  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\view.py", line 983, in set_clip_position  
normal = camera.position.transform_vector(camera_normal)  
  
See log for complete Python traceback.  
  

> hide #!3 models

> hide #!3.1 models

> close #1.1

> hide #!1.2 models

> hide #!1.1 models

Discarding unrecognised/unsupported data array
/unknown/unknown160805:18:49:40/FOM W  
MTZ file either contains multiple crystal datasets or is a mini-MTZ file.
Checking...  

WARNING: This MTZ file contains data from multiple crystals. Only the data
from the first crystal will be used. If you wish to use the other data, please
split your MTZ file into individual datasets (you can do this using tools from
the PHENIX or CCP suites).  

(CLIPPER) NOTE: No symmetry information found in model. Using symmetry from
MTZ file.  
Traceback (most recent call last):  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\isolde\isolde.py", line 1256, in _choose_reflections_file  
self.add_xtal_data(filename)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\isolde\isolde.py", line 1283, in add_xtal_data  
xmapset = map_mgr.add_xmapset_from_mtz(filename, self.params.map_shannon_rate)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\map_mgr.py", line 274, in add_xmapset_from_mtz  
return self.add_xmapset_from_file(mtzfile, oversampling_rate)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\map_mgr.py", line 293, in add_xmapset_from_file  
return XmapSet(self, mtzdata)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\xmapset.py", line 200, in __init__  
self.expand_to_cover_coords(self.master_map_mgr.last_covered_selection, 10)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\xmapset.py", line 567, in
expand_to_cover_coords  
get_minmax_grid(coords, cell, grid)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\clipper_util.py", line 89, in get_minmax_grid  
return _util.get_minmax_grid(coords, cell, grid_sampling)  
TypeError: get_minmax_grid(): incompatible function arguments. The following
argument types are supported:  
1\. (arg0: numpy.ndarray[float64], arg1: chimerax.clipper.clipper_python.Cell,
arg2: chimerax.clipper.clipper_python.Grid_sampling) -> numpy.ndarray[int32]  
  
Invoked with: <chimerax.atomic.molarray.Atoms object at 0x0000021DE901BF28>,
<chimerax.clipper.clipper_python.Cell object at 0x0000021DE90231F0>,
<chimerax.clipper.clipper_python.Grid_sampling object at 0x0000021DE9023FB8>  
  
TypeError: get_minmax_grid(): incompatible function arguments. The following
argument types are supported:  
1\. (arg0: numpy.ndarray[float64], arg1: chimerax.clipper.clipper_python.Cell,
arg2: chimerax.clipper.clipper_python.Grid_sampling) -> numpy.ndarray[int32]  
  
Invoked with: , ,  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\clipper_util.py", line 89, in get_minmax_grid  
return _util.get_minmax_grid(coords, cell, grid_sampling)  
  
See log for complete Python traceback.  
  

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\delayed_reaction.py", line 52, in callback  
self.ff(*self.ff_args)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\map_handler_base.py", line 163, in
_use_fast_thread_result  
self._set_surface(va, na, ta, hidden_edges)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\map\volume.py",
line 2098, in _set_surface  
self.set_geometry(va, na, ta)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\graphics\drawing.py", line 635, in set_geometry  
art()  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\mask_handler.py", line 194, in __call__  
self.set_surface_mask()  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\mask_handler.py", line 204, in set_surface_mask  
indices = numpy.where(self.mgr.get_vertex_mask(v))[0]  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\mask_handler.py", line 121, in get_vertex_mask  
self._update_mask()  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\mask_handler.py", line 112, in _update_mask  
update_origin = (len(self.coords) == 1)  
TypeError: object of type 'NoneType' has no len()  
  
Error processing trigger "new frame": object of type 'NoneType' has no len():  
TypeError: object of type 'NoneType' has no len()  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\maps\mask_handler.py", line 112, in _update_mask  
update_origin = (len(self.coords) == 1)  
  
See log for complete Python traceback.  
  

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  

> close

> close

> close

> close

> open H:/lysozyme/class/Coot_Example/pheasant_molrep1_refmac1.pdb

Chain information for pheasant_molrep1_refmac1.pdb #1  
---  
Chain | Description  
A | No description available  
  

Missing or corrupted CRYST1 card found in the PDB file. This model will be
treated as a cryo-EM model until associated with an MTZ file containing
symmetry information.  

Chain information for pheasant_molrep1_refmac1.pdb  
---  
Chain | Description  
1.3/A | No description available  
  

> open H:/lysozyme/class/Coot_Example/Lyso1_4_FWT.map

Opened Lyso1_4_FWT.map, grid size 85,76,84, pixel 0.569,0.569,0.589, shown at
level 1.4, step 1, values float32  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 457, in _wheel_event  
f.wheel(MouseEvent(event))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 389, in wheel  
self.zoom(100*d*psize, stereo_scaling = not event.alt_down())  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 168, in zoom  
self.far_clip.plane_point = new_origin + distance*(1+self.far_clip_multiplier)  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
ModuleNotFoundError: No module named 'chimerax.core.graphics.clipping'  
  
File "C:\Users\jlovelace\AppData\Local\UCSF\ChimeraX\0.9\site-
packages\chimerax\clipper\mousemodes.py", line 113, in far_clip  
from chimerax.core.graphics.clipping import CameraClipPlane  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 436.48
OpenGL renderer: GeForce GTX 1070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (3)

comment:1 by pett, 6 years ago

Component: Unassigned → Third Party
Owner: set to Tristan Croll
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Clipper: No module named 'chimerax.core.graphics.clipping'

comment:2 by Tristan Croll, 6 years ago

Component: Third Party → Tool Shed
Owner: changed from Tristan Croll to Conrad Huang

This is #2214 again. Hopefully this will finally go away with the next stable ChimeraX release?

comment:3 by Tristan Croll, 6 years ago

Resolution: → duplicate
Status: assigned → closed
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