Opened 6 years ago
Closed 6 years ago
#2522 closed defect (fixed)
H-bonds tool's model-restriction option error
Reported by: | Elaine Meng | Owned by: | pett |
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Priority: | normal | Milestone: | |
Component: | Structure Analysis | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-10-19) Description turning on "Restrict to models" option in H-bonds causes traceback upon Apply/OK. Doesn't matter which structure. Trying to run the calculation with the "Restrict to models" option turned on (and the one & only model highlighted in the chooser) gives the error. However, I suggest this option is both confusing and unneeded and could be removed from the GUI anyway. Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.91 (2019-10-19) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 2gbp format mmCIF fromDatabase pdb 2gbp title: Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein [more info...] Chain information for 2gbp #1 --- Chain | Description A | D-galactose/D-glucose binding protein Non-standard residues in 2gbp #1 --- BGC — β-D-glucose CA — calcium ion > toolshed show H-Bonds Traceback (most recent call last): File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/hbonds/tool.py", line 50, in run_hbonds run(self.session, " ".join(self.gui.get_command())) File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/hbonds/gui.py", line 227, in get_command atom_spec = concise_model_spec(models) TypeError: concise_model_spec() missing 1 required positional argument: 'models' TypeError: concise_model_spec() missing 1 required positional argument: 'models' File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/hbonds/gui.py", line 227, in get_command atom_spec = concise_model_spec(models) See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
Component: | Unassigned → Structure Analysis |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → H-bonds tool's model-restriction option error |
comment:2 by , 6 years ago
Resolution: | → fixed |
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Status: | accepted → closed |
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