Opened 6 years ago

Last modified 5 years ago

#2487 accepted defect

Blocking Opal jobs need longer timeout

Reported by: Elaine Meng Owned by: Eric Pettersen
Priority: major Milestone:
Component: Core Version:
Keywords: Cc: Eric Pettersen
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

Blocking Modeller jobs fail because they take longer than 90 seconds to complete, and therefore time out. Here is the commands to reproduce (which need to be in a script, so that blocking will occur):

open 3bp5
open uniprot:pdcd1_human
sequence associate /A pdcd1_human
open uniprot:q2lc89_human
sequence associate /B q2lc89_human:1
modeller comparative pdcd1_human:1,q2lc89_human:1 multichain true numModels 3

I have to say that the suds module is quite the enigmatic beast to investigate. For instance, there is no launchJobBlocking defined in the module -- it is dynamically defined. I flailed around trying to get the timeout changed with no success -- so reassigning this to you (was originally part of ticket #2001).

Change History (2)

comment:1 by Elaine Meng, 5 years ago

Owner: changed from Conrad Huang to Eric Pettersen

comment:2 by Eric Pettersen, 5 years ago

Status: assignedaccepted
Note: See TracTickets for help on using tickets.