Opened 6 years ago
Closed 6 years ago
#2451 closed defect (duplicate)
Tiling not working for volumes
Reported by: | Owned by: | Conrad Huang | |
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Priority: | normal | Milestone: | |
Component: | General Controls | Version: | |
Keywords: | Cc: | Tom Goddard | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-03) Description tile doesn't work for EM map Log: UCSF ChimeraX version: 0.91 (2019-09-03) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > tile No structures found for tiling. > open "/Volumes/GoogleDrive/My Drive/SdhB/EM/Titan2_hsTrap1_Sdhd/Refine3D/all_SdhB_k1_k4/run_ct11_class001.mrc" Opened run_ct11_class001.mrc, grid size 320,320,320, pixel 0.814, shown at level 0.00523, step 2, values float32 > open "/Volumes/GoogleDrive/My Drive/SdhB/EM/Titan2_hsTrap1_Sdhd/Refine3D/all_SdhB_k2_k2/run_ct11_class001.mrc" Opened run_ct11_class001.mrc, grid size 320,320,320, pixel 0.814, shown at level 0.00536, step 2, values float32 > tile Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py", line 254, in execute cmd.run(cmd_text) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2688, in run result = ci.function(session, **kw_args) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/std_commands/tile.py", line 51, in tile view_dist, anchor_spec, m.atomspec)) AttributeError: 'Volume' object has no attribute 'atomspec' AttributeError: 'Volume' object has no attribute 'atomspec' File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/std_commands/tile.py", line 51, in tile view_dist, anchor_spec, m.atomspec)) See log for complete Python traceback. > tile Traceback (most recent call last): File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py", line 254, in execute cmd.run(cmd_text) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2688, in run result = ci.function(session, **kw_args) File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/std_commands/tile.py", line 51, in tile view_dist, anchor_spec, m.atomspec)) AttributeError: 'Volume' object has no attribute 'atomspec' AttributeError: 'Volume' object has no attribute 'atomspec' File "/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/std_commands/tile.py", line 51, in tile view_dist, anchor_spec, m.atomspec)) See log for complete Python traceback. OpenGL version: 4.1 ATI-2.11.20 OpenGL renderer: AMD Radeon Pro 560 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 6 years ago
Cc: | added |
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Component: | Unassigned → General Controls |
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Tiling not working for volumes |
comment:2 by , 6 years ago
Resolution: | → duplicate |
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Status: | assigned → closed |
This was fixed as part of #2484.
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Reported by Yanxin Liu