Opened 6 years ago
Closed 6 years ago
#2448 closed defect (fixed)
"swapaa interactive spec same" buggy
Reported by: | Elaine Meng | Owned by: | pett |
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Priority: | normal | Milestone: | |
Component: | Structure Editing | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-09-26) Description traceback using "swapaa inter" open 2gbp format mmCIF fromDatabase pdb sel :183@cb swapaa inter sel same Log: Startup Messages --- warning | 'rota' is a prefix of an existing command 'rotamers' UCSF ChimeraX version: 0.91 (2019-09-26) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 2gbp format mmCIF fromDatabase pdb 2gbp title: Sugar and signal-transducer binding sites of the escherichia coli galactose chemoreceptor protein [more info...] Chain information for 2gbp #1 --- Chain | Description A | D-galactose/D-glucose binding protein Non-standard residues in 2gbp #1 --- BGC — β-D-glucose CA — calcium ion > select :183@cb 1 atom, 1 model selected > swapaa interactive sel same Using Dunbrack library Traceback (most recent call last): File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py", line 254, in execute cmd.run(cmd_text) File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2837, in run result = ci.function(session, **kw_args) File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/rotamers/command/cmd.py", line 105, in rotamers r_type = res.name NameError: name 'res' is not defined NameError: name 'res' is not defined File "/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/atomic/rotamers/command/cmd.py", line 105, in rotamers r_type = res.name See log for complete Python traceback. OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102 OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
Component: | Unassigned → Structure Editing |
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Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → "swapaa interactive spec same" buggy |
comment:2 by , 6 years ago
Resolution: | → fixed |
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Status: | accepted → closed |
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It was a problem with the handling of "same" for swapaa interactive. Fixed now and already works if you give an explicit residue type.