ISOLDE/Clipper: 'Atoms' object has no attribute 'transform'

[ne272@…]

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-01-24)
Description
Move the model with the right-click after clicking the arrow-cross

Log:
> open 6mhz

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz #1  
---  
Chain | Description  
A B | Lipopolysaccharide export system ATP-binding protein LptB  
F | Lipopolysaccharide export system permease protein LptF  
G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1  
---  
AOV — adp orthovanadate  
  
  

> open 9118 fromDatabase emdb

Opened emd_9118.map, grid size 192,192,192, pixel 1.23, shown at level 0.0392,
step 1, values float32  

> set bgColor white

> color selAtoms bychain

> select #1

7112 atoms, 7239 bonds, 4 pseudobonds, 1 model selected  

> ui mousemode rightMode rotate selected models

> ui mousemode rightMode translate selected models

> ui mousemode rightMode rotate selected models

> ui mousemode rightMode translate selected models

> fitmap #1/A,G inMap #2

Fit molecule 6mhz (#1) to map 9118 (#2) using 3620 atoms  
average map value = 0.04173, steps = 172  
shifted from previous position = 5.8  
rotated from previous position = 43 degrees  
atoms outside contour = 3074, contour level = 0.1  
  
Position of 6mhz (#1) relative to 9118 (#2) coordinates:  
Matrix rotation and translation  
0.20462644 -0.54320879 0.81428019 60.19424733  
0.76083285 0.61164921 0.21683778 -63.26857203  
-0.61584202 0.57516037 0.53845069 70.43462690  
Axis 0.18204758 0.72658070 0.66252484  
Axis point 89.65326131 0.00000000 16.25364341  
Rotation angle (degrees) 79.78379046  
Shift along axis 11.65318334  
  

> fitmap #1/A,G inMap #2

Fit molecule 6mhz (#1) to map 9118 (#2) using 3620 atoms  
average map value = 0.04173, steps = 48  
shifted from previous position = 0.00809  
rotated from previous position = 0.00905 degrees  
atoms outside contour = 3070, contour level = 0.1  
  
Position of 6mhz (#1) relative to 9118 (#2) coordinates:  
Matrix rotation and translation  
0.20460067 -0.54314809 0.81432716 60.18939320  
0.76074363 0.61174227 0.21688825 -63.27195535  
-0.61596079 0.57511872 0.53835933 70.46526617  
Axis 0.18200037 0.72666330 0.66244721  
Axis point 89.66589220 0.00000000 16.27393090  
Rotation angle (degrees) 79.78449139  
Shift along axis 11.65660320  
  

> fitmap #1/A,G inMap #2

Fit molecule 6mhz (#1) to map 9118 (#2) using 3620 atoms  
average map value = 0.04173, steps = 44  
shifted from previous position = 0.00535  
rotated from previous position = 0.00316 degrees  
atoms outside contour = 3073, contour level = 0.1  
  
Position of 6mhz (#1) relative to 9118 (#2) coordinates:  
Matrix rotation and translation  
0.20457952 -0.54311249 0.81435622 60.18011054  
0.76072753 0.61176153 0.21689041 -63.27647656  
-0.61598770 0.57513186 0.53831450 70.47369724  
Axis 0.18200517 0.72668863 0.66241811  
Axis point 89.66742484 0.00000000 16.28802760  
Rotation angle (degrees) 79.78585128  
Shift along axis 11.65384834  
  

> fitmap #1/A,G inMap #2

Fit molecule 6mhz (#1) to map 9118 (#2) using 3620 atoms  
average map value = 0.04173, steps = 40  
shifted from previous position = 0.0228  
rotated from previous position = 0.0171 degrees  
atoms outside contour = 3070, contour level = 0.1  
  
Position of 6mhz (#1) relative to 9118 (#2) coordinates:  
Matrix rotation and translation  
0.20459614 -0.54306691 0.81438243 60.15351933  
0.76089851 0.61161810 0.21669506 -63.26933848  
-0.61577096 0.57532741 0.53835351 70.42386851  
Axis 0.18220230 0.72658600 0.66247650  
Axis point 89.63187442 0.00000000 16.28414250  
Rotation angle (degrees) 79.78840691  
Shift along axis 11.64365219  
  

> fitmap #1/A,G inMap #2

Fit molecule 6mhz (#1) to map 9118 (#2) using 3620 atoms  
average map value = 0.04173, steps = 44  
shifted from previous position = 0.0143  
rotated from previous position = 0.0183 degrees  
atoms outside contour = 3074, contour level = 0.1  
  
Position of 6mhz (#1) relative to 9118 (#2) coordinates:  
Matrix rotation and translation  
0.20476879 -0.54326613 0.81420615 60.18445404  
0.76087902 0.61162622 0.21674059 -63.26776425  
-0.61573765 0.57513067 0.53860176 70.40545968  
Axis 0.18208637 0.72650806 0.66259384  
Axis point 89.64320068 0.00000000 16.24025152  
Rotation angle (degrees) 79.77591844  
Shift along axis 11.64445224  
  

> isolde start

Expected a keyword  

Expected a keyword  

Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 252, in execute  
cmd.run(cmd_text)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2612, in run  
result = ci.function(session, **kw_args)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/cmd.py", line 25, in isolde_start  
get_singleton(session)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/cmd.py", line 16, in get_singleton  
return tools.get_singleton(session, ISOLDE_ToolUI, 'ISOLDE', create=create)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/tools.py", line 214, in get_singleton  
tinst = tool_class(session, tool_name, **kw)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/tool.py", line 168, in __init__  
self.isolde = isolde.Isolde(self)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/isolde.py", line 320, in __init__  
self._start_gui(gui)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/isolde.py", line 457, in _start_gui  
self._populate_menus_and_update_params()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/isolde.py", line 556, in
_populate_menus_and_update_params  
self._update_model_list(None, None, force=True)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/isolde.py", line 1011, in _update_model_list  
self._change_selected_model(model=current_model)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/isolde/isolde.py", line 2439, in _change_selected_model  
sh = get_symmetry_handler(m, create=True, auto_add_to_session=True)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 151, in get_symmetry_handler  
sh = _get_symmetry_handler(structure, create)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 162, in _get_symmetry_handler  
return Symmetry_Manager(structure)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 497, in __init__  
apply_scene_positions(model)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 363, in apply_scene_positions  
model.atoms.transform(p)  
AttributeError: 'Atoms' object has no attribute 'transform'  
  
AttributeError: 'Atoms' object has no attribute 'transform'  
  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 363, in apply_scene_positions  
model.atoms.transform(p)  
  
See log for complete Python traceback.  
  

> clipper associate #2 toModel #1

Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 252, in execute  
cmd.run(cmd_text)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2612, in run  
result = ci.function(session, **kw_args)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/cmd.py", line 104, in associate_volumes  
mgr = get_map_mgr(to_model, create=True)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 166, in get_map_mgr  
sh = get_symmetry_handler(structure, create=create,
auto_add_to_session=auto_add_to_session)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 151, in get_symmetry_handler  
sh = _get_symmetry_handler(structure, create)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 162, in _get_symmetry_handler  
return Symmetry_Manager(structure)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 497, in __init__  
apply_scene_positions(model)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 363, in apply_scene_positions  
model.atoms.transform(p)  
AttributeError: 'Atoms' object has no attribute 'transform'  
  
AttributeError: 'Atoms' object has no attribute 'transform'  
  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 363, in apply_scene_positions  
model.atoms.transform(p)  
  
See log for complete Python traceback.  
  

> select #1

7112 atoms, 7239 bonds, 4 pseudobonds, 1 model selected  

> ~select #1

Nothing selected  

> select #1/B,F

3492 atoms, 3553 bonds, 1 pseudobond, 1 model selected  

> ~select #1

Nothing selected  

> close #1

> open 6mhz

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz #1  
---  
Chain | Description  
A B | Lipopolysaccharide export system ATP-binding protein LptB  
F | Lipopolysaccharide export system permease protein LptF  
G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1  
---  
AOV — adp orthovanadate  
  
  

> close

> open 6mhz

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz #1  
---  
Chain | Description  
A B | Lipopolysaccharide export system ATP-binding protein LptB  
F | Lipopolysaccharide export system permease protein LptF  
G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1  
---  
AOV — adp orthovanadate  
  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  

> close

'ISOLDE_ToolUI' object has no attribute 'isolde'  

> open 6mhz format mmCIF fromDatabase pdb

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz #1  
---  
Chain | Description  
A B | Lipopolysaccharide export system ATP-binding protein LptB  
F | Lipopolysaccharide export system permease protein LptF  
G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1  
---  
AOV — adp orthovanadate  
  
  

> select up

Nothing selected  

> select up

Nothing selected  

> open 9118 fromDatabase emdb

Opened emd_9118.map, grid size 192,192,192, pixel 1.23, shown at level 0.0392,
step 1, values float32  

> toolshed show ISOLDE

Expected a keyword  

Expected a keyword  

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz  
---  
Chain | Description  
1.3/A 1.3/B | Lipopolysaccharide export system ATP-binding protein LptB  
1.3/F | Lipopolysaccharide export system permease protein LptF  
1.3/G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1.3  
---  
AOV — adp orthovanadate  
  
Done loading forcefield  

> close

> open 6mhz format mmCIF fromDatabase pdb

6mhz title:  
Vanadate trapped Cryo-EM Structure of E.coli LptB2FG Transporter [more
info...]  
  
Chain information for 6mhz #1  
---  
Chain | Description  
A B | Lipopolysaccharide export system ATP-binding protein LptB  
F | Lipopolysaccharide export system permease protein LptF  
G | Lipopolysaccharide export system permease protein LptG  
  
Non-standard residues in 6mhz #1  
---  
AOV — adp orthovanadate  
  
  

> open 9118 fromDatabase emdb

Opened emd_9118.map, grid size 192,192,192, pixel 1.23, shown at level 0.0392,
step 1, values float32  

> color selAtoms bychain

Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  

> ui mousemode rightMode zoom

> ui mousemode rightMode translate

Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/triggerset.py", line 130, in invoke  
return self._func(self._name, data)  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1227, in _box_moved_cb  
self._update_box()  
File "/Users/ne272/Library/Application Support/ChimeraX/0.9/site-
packages/chimerax/clipper/symmetry.py", line 1240, in _update_box  
atoms = self.structure.atoms  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 43, in _getattr_  
return base.__getattr__(self, attr_name, look_in_class=base)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 39, in _getattr_  
return look_in_class._attr_registration.get_attr(attr_name)  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
Error processing trigger "spotlight moved": Execution of 'Structure' object's
'atoms' property raised AttributeError:  
AttributeError: Execution of 'Structure' object's 'atoms' property raised
AttributeError  
  
File
"/Users/ne272/Downloads/Setup/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/atomic/attr_registration.py", line 64, in get_attr  
raise AttributeError("Execution of '%s' object's '%s' property raised
AttributeError" % (self.class_.__name__, attr_name)) from None  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-12.10.12
OpenGL renderer: Intel(R) Iris(TM) Pro Graphics 6200
OpenGL vendor: Intel Inc.

[pett]

Reported by Norberto Urquijo

[Tristan Croll]

This is #2214 again. Norberto: the issue is that the ToolShed is currently ignoring the ChimeraX version requirement when installing Clipper as a dependency to ISOLDE, causing it to install a newer version which isn't compatible with the ChimeraX 0.9 release. You have two options:

1 (recommended): download and install the latest ChimeraX daily build, and install ISOLDE into that. This will give you the latest ISOLDE and Clipper dev versions, which have a lot of advancements since the ChimeraX 0.9/1.0b3 release.

2: Go to Tools/More Tools..., choose Clipper, click the Release History tab, scroll down to 0.9.4 and click the link for your operating system. That will install the correct Clipper version for ChimeraX 0.9.

[ne272@…]

Thanks! I have installed the latest versions of ChimeraX, Clipper, and
Isolde and now everything seems to be working fine.

On Tue, 24 Sep 2019 at 19:30, ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
wrote: