Opened 6 years ago

Closed 6 years ago

#2401 closed defect (duplicate)

seq view setting change: 'OptionalRGBAOption' object has no attribute 'get'

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-4.15.0-58-generic-x86_64-with-debian-stretch-sid
ChimeraX Version: 0.9 (2019-06-06)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 0.9 (2019-06-06)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/frechara/sec-data/papai/SAGA-TBP/pdb/possible_TBP-fit-coot-2.pdb

possible_TBP-fit-coot-2.pdb title:  
Crystal structure of yeast tata-binding protein and model for interaction with
DNA [more info...]  
  
Chain information for possible_TBP-fit-coot-2.pdb #1  
---  
Chain | Description  
A | tata-binding protein  
  

> set bgColor white

> lighting full

> lighting gentle

> open /home/frechara/Bureau/SAGA/Review/TFIIA_LargeSubunit-Allign.fa

Summary of feedback from opening
/home/frechara/Bureau/SAGA/Review/TFIIA_LargeSubunit-Allign.fa  
---  
note | Alignment identifier is TFIIA_LargeSubunit-Allign.fa  
  
Opened 2 sequences from TFIIA_LargeSubunit-Allign.fa  

> select

1417 atoms, 1444 bonds selected  

> sequence associate /A TFIIA_LargeSubunit-Allign.fa:1

Associated possible_TBP-fit-coot-2.pdb chain A to TOA1_YEAST P32773
Transcription initiation factor IIA large subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) OX=559292 GN=TOA1 PE=1 SV=1 with 179 mismatches
and/or gaps  

> help help:user/tools/sequenceviewer.html

> select

1417 atoms, 1444 bonds selected  

> select

1417 atoms, 1444 bonds selected  

Unknown command: regions  

> select

1417 atoms, 1444 bonds selected  

> select

1417 atoms, 1444 bonds selected  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 478, in <lambda>  
cb.clicked.connect(lambda state, s=self: s.make_callback())  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 170, in make_callback  
self._callback(self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 41, in <lambda>  
self._setting_change_cb(cat, o), attr_name=attr_name, settings=sv.settings,
**ctor_keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 87, in _setting_change_cb  
colors = [opt.get(), None]  
AttributeError: 'OptionalRGBAOption' object has no attribute 'get'  
  
AttributeError: 'OptionalRGBAOption' object has no attribute 'get'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 87, in _setting_change_cb  
colors = [opt.get(), None]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 478, in <lambda>  
cb.clicked.connect(lambda state, s=self: s.make_callback())  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 170, in make_callback  
self._callback(self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 41, in <lambda>  
self._setting_change_cb(cat, o), attr_name=attr_name, settings=sv.settings,
**ctor_keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 87, in _setting_change_cb  
colors = [opt.get(), None]  
AttributeError: 'OptionalRGBAOption' object has no attribute 'get'  
  
AttributeError: 'OptionalRGBAOption' object has no attribute 'get'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 87, in _setting_change_cb  
colors = [opt.get(), None]  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 543, in <lambda>  
cb.clicked.connect(lambda state, s=self: s.make_callback())  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 170, in make_callback  
self._callback(self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 41, in <lambda>  
self._setting_change_cb(cat, o), attr_name=attr_name, settings=sv.settings,
**ctor_keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 543, in <lambda>  
cb.clicked.connect(lambda state, s=self: s.make_callback())  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 170, in make_callback  
self._callback(self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 41, in <lambda>  
self._setting_change_cb(cat, o), attr_name=attr_name, settings=sv.settings,
**ctor_keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 543, in <lambda>  
cb.clicked.connect(lambda state, s=self: s.make_callback())  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-
packages/chimerax/ui/options/options.py", line 170, in make_callback  
self._callback(self)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 41, in <lambda>  
self._setting_change_cb(cat, o), attr_name=attr_name, settings=sv.settings,
**ctor_keywords)  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
AttributeError: 'OptionalRGBAPairOption' object has no attribute 'get'  
  
File "/usr/lib/ucsf-chimerax/lib/python3.7/site-packages/chimerax/seq-
view/settings_tool.py", line 89, in _setting_change_cb  
colors = opt.get()  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 418.56
OpenGL renderer: Quadro P4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Change History (2)

comment:1 by pett, 6 years ago

Component: Unassigned → Sequence
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → seq view setting change: 'OptionalRGBAOption' object has no attribute 'get'

comment:2 by pett, 6 years ago

Resolution: → duplicate
Status: accepted → closed
Note: See TracTickets for help on using tickets.