Opened 6 years ago

Closed 6 years ago

#2316 closed enhancement (fixed)

Add fitmap include zeros option

Reported by: goddard@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc: Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Darwin-18.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-08-13)
Description
The fitmap command with envelope false excludes grid points with data values equal to zero.  It would be useful to include all grid points, for example when aligning light microscopy of medical imaging data.  Would like an option added to the fitmap command to allow this.

Log:
UCSF ChimeraX version: 0.91 (2019-08-13)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 ATI-2.11.20
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Change History (2)

comment:1 by Tom Goddard, 6 years ago

Cc: Elaine Meng added
Component: Unassigned → Volume Data
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Add fitmap include zeros option
Type: defect → enhancement

comment:2 by Tom Goddard, 6 years ago

Resolution: → fixed
Status: assigned → closed

Fixed.

Added fitmap command option "zeros true|false" default false.

zeros : bool

If envelope is false, then the zeros option determines whether grid points of
the moving map with zero values are used in the fit. Default false. If envelope
is true, this option is ignored and zeros inside the envelope are used.

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