Opened 6 years ago
Closed 6 years ago
#2301 closed defect (fixed)
bare 'label delete' gives error
| Reported by: | Elaine Meng | Owned by: | Tom Goddard |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-08-07)
Description
command "label delete" without specifier gives traceback
User error really, but perhaps should not give traceback.
Log:
UCSF ChimeraX version: 0.91 (2019-08-07)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> cd examples
Current working directory is: /Users/meng/Desktop/examples
> open /Users/meng/Desktop/examples/temp.cxs format session
opened ChimeraX session
> open /Users/meng/Desktop/examples/kmorph-play.cxc
> set maxFrameRate 25
> windowsize 400 400
> view p1
> 2dlabels text "FGFR1 kinase domain" xpos .15 ypos .9 size 28
> 2dlabels color orange size 26 xpos .53 ypos .12 text phosphorylated
> 2dlabels color orange size 26 xpos .56 ypos .05 text (activated)
> hide #4.2-3
> movie record supersample 3
> wait 10
> roll y 20 150 rock 150
> wait 150
> wait 10
> show :acp
> perframe "trans :acp $1 targ a" ranges 100,0 frames 20
> coordset #3 1,41 computeSs true
> wait 41
> show #2:653,654 & phosphate
> show #4.2-3
> roll y 20 150 rock 150
> wait 150
> hide #4.2-3
> hide #2:653,654 & phosphate
> wait 10
> coordset #3 41,32 computeSs true
> perframe "trans :acp $1 targ a" ranges 0,100 frames 10
> wait 10
> hide :acp
> coordset #3 31,1 computeSs true
> wait 31
> wait 10
> movie stop
> movie encode /Users/meng/Desktop/kmorph.mp4,/Users/meng/Desktop/kmorph.ogv
quality high
Movie saved to /Users/meng/Desktop/kmorph.mp4
Movie saved to /Users/meng/Desktop/kmorph.ogv
> 2dlabels delete all
executed kmorph-play.cxc
> close session
> open prc.cxs
File not found: prc.cxs
> cd ..
Current working directory is: /Users/meng/Desktop
> open prc.cxs
opened ChimeraX session
> 2dlabels delete #2
> close session
> open prc.cxs
opened ChimeraX session
Traceback (most recent call last):
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/cmd_line/tool.py", line 254, in execute
cmd.run(cmd_text)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2617, in run
prev_annos = self._process_positional_arguments()
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2400, in
_process_positional_arguments
value, text = self._parse_arg(anno, text, session, False)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 2263, in _parse_arg
value, replacement, rest = annotation.parse(text, session)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py", line 828, in parse
return anno.parse(text, session)
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 280, in parse
raise AnnotationError("Expected %s" % NameArg.name)
NameError: name 'NameArg' is not defined
NameError: name 'NameArg' is not defined
File
"/Users/chimera/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/label/label2d.py", line 280, in parse
raise AnnotationError("Expected %s" % NameArg.name)
See log for complete Python traceback.
OpenGL version: 4.1 NVIDIA-10.32.0 355.11.10.10.40.102
OpenGL renderer: NVIDIA GeForce GTX 675MX OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → bare 'label delete' gives error |
comment:2 by , 6 years ago
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Fixed.
Also I made "2dlabels delete" with no arguments delete all labels.