Opened 6 years ago
Closed 6 years ago
#2061 closed defect (duplicate)
Uninstall Clipper: JSONDecodeError
Reported by: | Scooter Morris | Owned by: | Conrad Huang |
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Priority: | normal | Milestone: | |
Component: | Tool Shed | Version: | |
Keywords: | Cc: | Tristan Croll | |
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.2.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-06-06) Description Since ISOLDE wasn't working, I tried to uninstall it and got this... Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.9 (2019-06-06) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > toolshed uninstall ISOLDE Traceback (most recent call last): File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 730, in __init__ self._data = json.loads(data) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 348, in loads return _default_decoder.decode(s) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/decoder.py", line 337, in decode obj, end = self.raw_decode(s, idx=_w(s, 0).end()) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/decoder.py", line 355, in raw_decode raise JSONDecodeError("Expecting value", s, err.value) from None json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/cmd_line/tool.py", line 254, in execute cmd.run(cmd_text) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/cli.py", line 2632, in run result = ci.function(session, **kw_args) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/commands/toolshed.py", line 254, in toolshed_uninstall deps = bi.dependents(logger) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/core/toolshed/info.py", line 667, in dependents for d in DistributionPath().get_distributions(): File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py", line 213, in get_distributions self._generate_cache() File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py", line 167, in _generate_cache for dist in self._yield_distributions(): File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/database.py", line 148, in _yield_distributions metadata = Metadata(fileobj=stream, scheme='legacy') File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 741, in __init__ self.validate() File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 958, in validate missing, warnings = self._legacy.check(True) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 522, in check self.set_metadata_version() File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 289, in set_metadata_version self._fields['Metadata-Version'] = _best_version(self._fields) File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 167, in _best_version raise MetadataConflictError('Unknown metadata set') distlib.metadata.MetadataConflictError: Unknown metadata set distlib.metadata.MetadataConflictError: Unknown metadata set File "/Applications/ChimeraX-0.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/distlib/metadata.py", line 167, in _best_version raise MetadataConflictError('Unknown metadata set') See log for complete Python traceback. OpenGL version: 4.1 ATI-2.4.10 OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (3)
comment:1 by , 6 years ago
Cc: | added |
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Platform: | → all |
Project: | → ChimeraX |
comment:2 by , 6 years ago
Component: | Unassigned → Tool Shed |
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Owner: | set to |
Status: | new → assigned |
Summary: | ChimeraX bug report submission → Uninstall Clipper: JSONDecodeError |
comment:3 by , 6 years ago
Resolution: | → duplicate |
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Status: | assigned → closed |
As Tristan points out, duplicate of #2043; adding Scooter to that
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This is the same as #2043, I think.