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Opened 6 years ago
Closed 6 years ago
#2048 closed defect (duplicate)
Basic Actions: KeyError: 'selector'
| Reported by: | Owned by: | Conrad Huang | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | General Controls | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Darwin-18.6.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-06-01) Description (Describe the actions that caused this problem to occur here) Log: UCSF ChimeraX version: 0.9 (2019-06-01) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX Thank you for registering your copy of ChimeraX. By providing the information requested you will be helping us document the impact this software is having in the scientific community. The information you supplied will only be used for reporting summary usage statistics; no individual data will be released. a.kasiliauskaite@gmail.com is subscribed to the ChimeraX announcements list > open 3psi 3psi title: Crystal Structure of the Spt6 core domain from Saccharomyces cerevisiae, Form Spt6(239-1451) [more info...] Chain information for 3psi #1 --- Chain | Description A | Transcription elongation factor SPT6 > set bgColor white > hide #!1.1 models > preset cartoons/nucleotides cylinders/stubs Changed 0 atom styles Preset expands to these ChimeraX commands: surf hide; style (protein|nucleic|solvent) & @@draw_mode=0 stick; cartoon; cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20; cartoon style ~(nucleic|strand) x round; cartoon style (nucleic|strand) x rect; cartoon style protein modeh tube rad 2 sides 24 thick 0.6; cartoon style nucleic x round width 1.6 thick 1.6; nucleotides stubs > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: surf hide; style (protein|nucleic|solvent) & @@draw_mode=0 stick; cartoon; cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20; cartoon style ~(nucleic|strand) x round; cartoon style (nucleic|strand) x rect; nucleotides tube/slab shape box > preset cartoons/nucleotides licorice/ovals Changed 0 atom styles Preset expands to these ChimeraX commands: surf hide; style (protein|nucleic|solvent) & @@draw_mode=0 stick; cartoon; cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20; cartoon style ~(nucleic|strand) x round; cartoon style (nucleic|strand) x rect; cartoon style protein modeh default arrows f x round width 1 thick 1; cartoon style nucleic x round width 1.6 thick 1.6; nucleotides tube/slab shape ellipsoid > preset "initial styles" cartoon Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset "overall look" publication Preset expands to these ChimeraX commands: set bg white; set silhouettes t > preset cartoons/nucleotides ribbons/slabs Changed 0 atom styles Preset expands to these ChimeraX commands: surf hide; style (protein|nucleic|solvent) & @@draw_mode=0 stick; cartoon; cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20; cartoon style ~(nucleic|strand) x round; cartoon style (nucleic|strand) x rect; nucleotides tube/slab shape box > toolshed show "Basic Actions" > show /A target s > color /A #108040 target s > movie record > turn y 2 180 > wait 180 > movie encode /Users/aiste/Desktop/movie3.mp4 Movie saved to /Users/aiste/Desktop/movie3.mp4 > lighting simple > lighting soft > movie record > turn y 2 180 > wait 180 > movie encode /Users/aiste/Desktop/movie4.mp4 Movie saved to /Users/aiste/Desktop/movie4.mp4 > open /Users/aiste/Downloads/blockedtSH2_surface.pdb Chain information for blockedtSH2_surface.pdb #2 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #1 > select /G 1582 atoms, 1617 bonds selected > select #2/G:1253-1440 1578 atoms, 1617 bonds selected > sequence chain #2/G Alignment identifier is 2.G Missing or invalid "chains" argument: only initial part "#2" of atom specifier valid Missing or invalid "chains" argument: only initial part "#2" of atom specifier valid > sequence chain #2/A Alignment identifier is 2.A > open /Users/aiste/Downloads/blockedtSH2_surfaceX.pdb Chain information for blockedtSH2_surfaceX.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available Missing or invalid "chains" argument: only initial part "#1" of atom specifier valid Missing or invalid "chains" argument: only initial part "#1" of atom specifier valid > close #2 > hide #!1.1 models > delete sel > delete sel > preset "overall look" publication Preset expands to these ChimeraX commands: set bg white; set silhouettes t > hide /G target abp > hide /F target abp > hide /E target abp > hide /D target abp > hide /C target abp > hide /B target abp > hide /A target abp > show /A target c > show /C target c > show /D target c > show /E target c > show /F target c > show /G target c > show /A target c > show /B target c > show /C target c > show /D target c > show /E target c > show /F target c > show /G target c > show /G target s > show /F target s > show /E target s > show /D target s > show /C target s > show /A target s > show /B target s > select :30@CA 1 atom selected > select :31@CA 1 atom selected > select :30@CA 1 atom selected > select :31@CA 1 atom selected > select clear > select clear > hide /A target s > hide /B target s > hide /C target s > hide /D target s > hide /E target s > hide /F target s > hide /G target s > hide /G target c > hide /F target c > hide /E target c > hide /D target c > hide /C target c > hide /B target c > hide /A target c > ui mousemode rightMode "translate selected models" > ui mousemode rightMode "rotate selected models" > ui mousemode rightMode "translate selected models" > hide /A target s > hide /B target s > show /A target s > show /B target s > show /C target s > show /C target s > show /D target s > show /E target s > show /F target s > show /G target s > show /G target s > show /F target s > hide /G target s > hide /F target s > hide /E target s > hide /D target s > hide /C target s > hide /B target s > hide /A target s > hide /G target s > show /G target s > show /G target s > hide /G target s > ui mousemode rightMode "rotate selected models" > ui mousemode rightMode "translate selected models" > show /G target s > show /F target s > show /E target s > show /C target s > show /B target s > show /A target s Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] See log for complete Python traceback. > show /A target s > show /B target s > show /C target s > show /D target s > show /E target s > show /F target s > show /G target s > ui mousemode rightMode "rotate selected models" > ui mousemode rightMode "rotate selected models" > ui mousemode rightMode "translate selected models" > hide /G target s > hide /F target s > hide /E target s > hide /D target s > hide /C target s > hide /B target s > hide /A target s > ui mousemode rightMode "translate selected models" > ui mousemode rightMode "translate selected models" > hide /G target s > show /G target s > show /F target s > show /E target s > show /D target s > show /C target s > show /B target s > show /A target s Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] See log for complete Python traceback. > open /Users/aiste/Downloads/flexi_part.pse Unrecognized file suffix '.pse' Unrecognized file suffix '.pse' > open /Users/aiste/Downloads/coral7.pdb Summary of feedback from opening /Users/aiste/Downloads/coral7.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 75 T: 0.411E-02 Suc: 96 Eva: 796930 CPU: 0.116E+05 F: 2.4870 Pen: 1.4768 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01021 Ignored bad PDB record found on line 4 REMARK Cross: 0.00024 Center: 1.45307 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 352.707 67.593 46.057 Ignored bad PDB record found on line 7013 REMARK New center positioned at 6.140 67.499 -52.089 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral7.pdb #2 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > lighting full > lighting soft > lighting full > open /Users/aiste/Downloads/coral7.pdb Summary of feedback from opening /Users/aiste/Downloads/coral7.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 75 T: 0.411E-02 Suc: 96 Eva: 796930 CPU: 0.116E+05 F: 2.4870 Pen: 1.4768 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01021 Ignored bad PDB record found on line 4 REMARK Cross: 0.00024 Center: 1.45307 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 352.707 67.593 46.057 Ignored bad PDB record found on line 7013 REMARK New center positioned at 6.140 67.499 -52.089 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral7.pdb #3 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > select #1 8977 atoms, 9065 bonds, 91 pseudobonds, 1 model selected > hide #1 target m > show #!1 models > close #1 > open /Users/aiste/Downloads/coral13.pdb Summary of feedback from opening /Users/aiste/Downloads/coral13.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 72 T: 0.564E-02 Suc: 89 Eva: 749656 CPU: 0.108E+05 F: 2.4376 Pen: 1.4282 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00933 Ignored bad PDB record found on line 4 REMARK Cross: 0.00025 Center: 1.40287 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 340.439 59.240 51.128 Ignored bad PDB record found on line 7013 REMARK New center positioned at 7.741 65.188 -50.297 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral13.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral10.pdb Summary of feedback from opening /Users/aiste/Downloads/coral10.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 81 T: 0.218E-02 Suc: 60 Eva: 895882 CPU: 0.129E+05 F: 2.5318 Pen: 1.5215 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01028 Ignored bad PDB record found on line 4 REMARK Cross: 0.00027 Center: 1.49467 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 265.761 150.485 331.506 Ignored bad PDB record found on line 7013 REMARK New center positioned at -49.975 74.102 -18.061 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral10.pdb #4 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral15.pdb Summary of feedback from opening /Users/aiste/Downloads/coral15.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 73 T: 0.508E-02 Suc: 92 Eva: 763417 CPU: 0.111E+05 F: 2.4641 Pen: 1.4541 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00998 Ignored bad PDB record found on line 4 REMARK Cross: 0.00032 Center: 1.42201 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 321.941 80.316 72.675 Ignored bad PDB record found on line 7013 REMARK New center positioned at 8.440 67.158 -47.297 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral15.pdb #5 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral12.pdb Summary of feedback from opening /Users/aiste/Downloads/coral12.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 81 T: 0.218E-02 Suc: 83 Eva: 898625 CPU: 0.129E+05 F: 2.5294 Pen: 1.5176 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01173 Ignored bad PDB record found on line 4 REMARK Cross: 0.00028 Center: 1.48945 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 98.497 146.841 134.301 Ignored bad PDB record found on line 7013 REMARK New center positioned at -61.093 57.592 -36.245 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral12.pdb #6 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #1 > close #2 > close #3 > close #4 > close #5 > hide #!6.1 models > show /A target s > show /B target s > show /C target s > show /D target s > show /D target s > show /E target s > show /F target s > show /G target s > open /Users/aiste/Downloads/coral7.pdb Summary of feedback from opening /Users/aiste/Downloads/coral7.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 75 T: 0.411E-02 Suc: 96 Eva: 796930 CPU: 0.116E+05 F: 2.4870 Pen: 1.4768 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01021 Ignored bad PDB record found on line 4 REMARK Cross: 0.00024 Center: 1.45307 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 352.707 67.593 46.057 Ignored bad PDB record found on line 7013 REMARK New center positioned at 6.140 67.499 -52.089 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral7.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #1 > open /Users/aiste/Downloads/coral11.pdb Summary of feedback from opening /Users/aiste/Downloads/coral11.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 72 T: 0.564E-02 Suc: 100 Eva: 746773 CPU: 0.108E+05 F: 2.4760 Pen: 1.4676 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00835 Ignored bad PDB record found on line 4 REMARK Cross: 0.00037 Center: 1.43079 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 337.645 54.558 51.542 Ignored bad PDB record found on line 7013 REMARK New center positioned at 8.338 65.536 -49.901 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral11.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #1 > open /Users/aiste/Downloads/coral8.pdb Summary of feedback from opening /Users/aiste/Downloads/coral8.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 75 T: 0.411E-02 Suc: 97 Eva: 797197 CPU: 0.116E+05 F: 2.4586 Pen: 1.4571 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00155 Ignored bad PDB record found on line 4 REMARK Cross: 0.00029 Center: 1.42812 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 327.825 66.437 65.120 Ignored bad PDB record found on line 7013 REMARK New center positioned at 11.599 67.625 -46.981 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral8.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #1 > open /Users/aiste/Downloads/coral9.pdb Summary of feedback from opening /Users/aiste/Downloads/coral9.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 81 T: 0.218E-02 Suc: 92 Eva: 899054 CPU: 0.130E+05 F: 2.5515 Pen: 1.5513 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00021 Ignored bad PDB record found on line 4 REMARK Cross: 0.00032 Center: 1.51934 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 283.492 164.169 323.288 Ignored bad PDB record found on line 7013 REMARK New center positioned at -54.076 73.577 -20.486 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral9.pdb #1 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral10.pdb Summary of feedback from opening /Users/aiste/Downloads/coral10.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 81 T: 0.218E-02 Suc: 60 Eva: 895882 CPU: 0.129E+05 F: 2.5318 Pen: 1.5215 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.01028 Ignored bad PDB record found on line 4 REMARK Cross: 0.00027 Center: 1.49467 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 265.761 150.485 331.506 Ignored bad PDB record found on line 7013 REMARK New center positioned at -49.975 74.102 -18.061 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral10.pdb #2 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral15.pdb Summary of feedback from opening /Users/aiste/Downloads/coral15.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 73 T: 0.508E-02 Suc: 92 Eva: 763417 CPU: 0.111E+05 F: 2.4641 Pen: 1.4541 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00998 Ignored bad PDB record found on line 4 REMARK Cross: 0.00032 Center: 1.42201 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 321.941 80.316 72.675 Ignored bad PDB record found on line 7013 REMARK New center positioned at 8.440 67.158 -47.297 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral15.pdb #3 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #3 > open /Users/aiste/Downloads/coral14.pdb Summary of feedback from opening /Users/aiste/Downloads/coral14.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 80 T: 0.243E-02 Suc: 82 Eva: 882832 CPU: 0.127E+05 F: 2.5100 Pen: 1.5049 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00514 Ignored bad PDB record found on line 4 REMARK Cross: 0.00026 Center: 1.47854 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 185.255 141.727 54.359 Ignored bad PDB record found on line 7013 REMARK New center positioned at -23.254 85.159 -14.074 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral14.pdb #3 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > open /Users/aiste/Downloads/coral13.pdb Summary of feedback from opening /Users/aiste/Downloads/coral13.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK Project description: Ignored bad PDB record found on line 2 REMARK j: 72 T: 0.564E-02 Suc: 89 Eva: 749656 CPU: 0.108E+05 F: 2.4376 Pen: 1.4282 Ignored bad PDB record found on line 3 REMARK The best Chi^2 values: 1.00933 Ignored bad PDB record found on line 4 REMARK Cross: 0.00025 Center: 1.40287 Ignored bad PDB record found on line 5 REMARK Cont Penalt.: 0.00000 9 messages similar to the above omitted Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 95 messages similar to the above omitted Ignored bad PDB record found on line 1449 REMARK ******************************* Ignored bad PDB record found on line 1450 REMARK Evaluated from PDB file 2.pdb Ignored bad PDB record found on line 1451 REMARK Old center positioned at 9.047 28.292 -40.031 Ignored bad PDB record found on line 1452 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1453 REMARK New center positioned at 9.047 28.292 -40.031 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 194 messages similar to the above omitted Ignored bad PDB record found on line 1655 REMARK ******************************* Ignored bad PDB record found on line 1656 REMARK Evaluated from PDB file 3.pdb Ignored bad PDB record found on line 1657 REMARK Old center positioned at 24.230 40.969 -48.177 Ignored bad PDB record found on line 1658 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 1659 REMARK New center positioned at 24.230 40.969 -48.177 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 463 messages similar to the above omitted Ignored bad PDB record found on line 2130 REMARK ******************************* Ignored bad PDB record found on line 2131 REMARK Evaluated from PDB file 4.pdb Ignored bad PDB record found on line 2132 REMARK Old center positioned at -26.383 41.634 -20.071 Ignored bad PDB record found on line 2133 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 2134 REMARK New center positioned at -26.383 41.634 -20.071 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1332 messages similar to the above omitted Ignored bad PDB record found on line 5688 REMARK ******************************* Ignored bad PDB record found on line 5689 REMARK Evaluated from PDB file 5.pdb Ignored bad PDB record found on line 5690 REMARK Old center positioned at -28.198 23.077 8.429 Ignored bad PDB record found on line 5691 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 5692 REMARK New center positioned at -28.198 23.077 8.429 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1060 messages similar to the above omitted Ignored bad PDB record found on line 6760 REMARK ******************************* Ignored bad PDB record found on line 6761 REMARK Evaluated from PDB file 6.pdb Ignored bad PDB record found on line 6762 REMARK Old center positioned at -13.895 72.598 -36.399 Ignored bad PDB record found on line 6763 REMARK Rotated by Euler angles 0.000 0.000 0.000 Ignored bad PDB record found on line 6764 REMARK New center positioned at -13.895 72.598 -36.399 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 237 messages similar to the above omitted Ignored bad PDB record found on line 7009 REMARK ******************************* Ignored bad PDB record found on line 7010 REMARK Evaluated from PDB file domain_3PSJ.pdb Ignored bad PDB record found on line 7011 REMARK Old center positioned at 49.673 35.982 45.003 Ignored bad PDB record found on line 7012 REMARK Rotated by Euler angles 340.439 59.240 51.128 Ignored bad PDB record found on line 7013 REMARK New center positioned at 7.741 65.188 -50.297 Duplicate atom serial number found: 1 Duplicate atom serial number found: 2 Duplicate atom serial number found: 3 Duplicate atom serial number found: 4 Duplicate atom serial number found: 5 1589 messages similar to the above omitted Chain information for coral13.pdb #4 --- Chain | Description | No description available A | No description available B | No description available C | No description available D | No description available E | No description available F | No description available G | No description available > close #4 > close #2 > close #1 > close #3 Missing or invalid "chains" argument: only initial part "#4" of atom specifier valid Missing or invalid "chains" argument: only initial part "#4" of atom specifier valid > hide /A target abp > hide /B target abp > hide /C target abp > hide /D target abp > hide /E target abp > hide /F target abp > hide /G target abp > hide /A target s > hide /B target s > hide /C target s > hide /D target s > hide /E target s > hide /F target s > hide /G target s > select :357@CA 2 atoms selected > select :358@CA 2 atoms selected > select :359@CA 2 atoms selected > delete sel > delete sel > delete sel > delete sel > delete sel > delete sel > delete sel > delete sel > select :286@CA 1 atom selected > select :286@CA 1 atom selected > select clear > select :286@CA 1 atom selected > select :285@CA 1 atom selected > select :288@CA 1 atom selected > select :287@CA 1 atom selected > delete sel > delete sel > show /A target s > show /B target s > show /C target s > show /D target s > show /E target s > show /F target s > show /G target s > show /G target s > show /F target s > show /E target s > show /D target s > show /C target s > show /B target s > show /A target s > preset "overall look" publication Preset expands to these ChimeraX commands: set bg white; set silhouettes t > lighting soft > color /G #108040 target s > show /F target s > color /F #108040 target s > show /E target s > color /E #108040 target s > color /A #108040 target s > color /B #108040 target s > color /D #108040 target s > color /C #108040 target s Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 177, in _cb_color selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 177, in _cb_color selector = query["selector"][0] See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] See log for complete Python traceback. Traceback (most recent call last): File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/ui/gui.py", line 556, in customEvent func(*args, **kw) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 160, in handle_scheme method(query) File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] KeyError: 'selector' KeyError: 'selector' File "/Applications/ChimeraX-0.9-rc-2019.06.01.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site- packages/chimerax/basic_actions/tool.py", line 167, in _cb_show_hide selector = query["selector"][0] See log for complete Python traceback. OpenGL version: 4.1 ATI-2.9.26 OpenGL renderer: AMD Radeon HD - FirePro D700 OpenGL Engine OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → General Controls |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Basic Actions: KeyError: 'selector' |
comment:2 by , 6 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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duplicate of #2044