ChimeraX bug report submission

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.12rc202606060206 (2026-06-06 02:06:12 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
Startup Messages  
---  
warning | Unknown Vendor ID: 0x4d4f4351  
  
UCSF ChimeraX version: 1.12rc202606060206 (2026-06-06)  
© 2016-2026 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open emdb:6287 format ccp4 fromDatabase emdb

Opened emdb 6287 as #1, grid size 300,300,300, pixel 0.982, shown at level
0.025, step 2, values float32  

> set bgColor white

> open p28061 fromDatabase alphafold

Chain information for AlphaFold P28061 #2  
---  
Chain | Description | UniProt  
A | Proteasome subunit beta | PSB_THEAC 1-211  
  
Color AlphaFold P28061 by residue attribute pLDDT_score  

> save "C:/Users/clara/Downloads/dois em lugares aleatorios.jpg" width 699
> height 480 supersample 3

> hide #!1 models

> show atoms

> style stick

Changed 1618 atom styles  

> style sphere

Changed 1618 atom styles  

> undo

> style ball

Changed 1618 atom styles  

> select clear

[Repeated 1 time(s)]

> color #2 magenta

> select /A:95

8 atoms, 7 bonds, 1 residue, 1 model selected  

> color sel yellow

> select /A:95@CD2

1 atom, 1 residue, 1 model selected  

> select /A:95@CD2

1 atom, 1 residue, 1 model selected  

> select clear

> select /A:90@CD1

1 atom, 1 residue, 1 model selected  

> select /A:90@CD1

1 atom, 1 residue, 1 model selected  

> select /A:90@CD1

1 atom, 1 residue, 1 model selected  

> color sel magenta

> select clear

> select /A:90@CD1

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

104 atoms, 103 bonds, 14 residues, 1 model selected  

> select down

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select clear

> select /A:90@CD1

1 atom, 1 residue, 1 model selected  

> select up

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

104 atoms, 103 bonds, 14 residues, 1 model selected  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\ui\gui.py", line 449, in forward_keystroke  
run(self.session, 'select up')  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\core\commands\run.py", line 49, in run  
results = command.run(text, log=log, return_json=return_json)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\core\commands\cli.py", line 3245, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 145, in select_up  
report_selection(session)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\std_commands\select.py", line 192, in report_selection  
session.logger.status(', '.join(lines) + ' selected', log = True)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\core\logger.py", line 522, in status  
StatusLogger.status(self, msg, **kw)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\core\logger.py", line 220, in status  
if l.status(msg, color, secondary) and getattr(  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\ui\gui.py", line 1149, in status  
sbar.status(msg, color, secondary)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 177, in status  
self._draw_text(msg, color, secondary)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\ui\statusbar.py", line 187, in _draw_text  
draw_overlays(dlist, self._renderer)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1613, in draw_overlays  
_draw_multiple(drawings, r, Drawing.TRANSPARENT_DRAW_PASS)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1572, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 784, in draw  
self.draw_self(renderer, draw_pass)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 795, in draw_self  
self._draw_geometry(renderer, transparent_only = any_opaque)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 831, in _draw_geometry  
t.bind_texture()  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3194, in bind_texture  
self.fill_opengl_texture()  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3237, in fill_opengl_texture  
self.initialize_texture(size, format, iformat, tdtype, ncomp, data)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 3114, in initialize_texture  
GL.glTexImage2D(gl_target, 0, iformat, size[0], size[1], 0, format,  
File "src/latebind.pyx", line 40, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 319, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 312, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'sem mem\xf3ria',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'sem mem\xf3ria',  
baseOperation = glTexImage2D,  
pyArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArgs = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
),  
cArguments = (  
GL_TEXTURE_2D,  
0,  
GL_RGBA8,  
540,  
34,  
0,  
GL_RGBA,  
GL_UNSIGNED_BYTE,  
array([[[0, 0, 0, 0],  
[0, 0, 0, 0],  
[0, 0, 0, 0],  
...,  
[0, 0, 0, 0],  
[0, 0, 0...,  
)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1285,  
description = b'sem mem\xf3ria',  
baseOperation = glBufferData,  
pyArgs = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\core\updateloop.py", line 84, in draw_new_frame  
view.draw(check_for_changes = False)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\view.py", line 188, in draw  
self._draw_scene(camera, drawings)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\view.py", line 273, in _draw_scene  
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1629, in draw_highlight_outline  
_draw_multiple(drawings, r, Drawing.HIGHLIGHT_DRAW_PASS)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1572, in _draw_multiple  
d.draw(renderer, draw_pass)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 784, in draw  
self.draw_self(renderer, draw_pass)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 798, in draw_self  
self._draw_geometry(renderer, highlighted_only = True)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 818, in _draw_geometry  
ds.activate_bindings(renderer)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1935, in activate_bindings  
self.update_buffers()  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1923, in update_buffers  
b.update_buffer_data(data)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 2846, in update_buffer_data  
GL.glBufferData(btype, size, d, GL.GL_STATIC_DRAW)  
File "src/latebind.pyx", line 52, in OpenGL_accelerate.latebind.Curry.__call__  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\OpenGL\GL\VERSION\GL_1_5.py", line 89, in glBufferData  
return baseOperation( target, size, data, usage )  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "src/latebind.pyx", line 40, in
OpenGL_accelerate.latebind.LateBind.__call__  
File "src/wrapper.pyx", line 319, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/wrapper.pyx", line 312, in
OpenGL_accelerate.wrapper.Wrapper.__call__  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1285,  
description = b'sem mem\xf3ria',  
baseOperation = glBufferData,  
pyArgs = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
),  
cArgs = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
),  
cArguments = (  
34962,  
992,  
array([[-11.011 , -0.467 , 6.951 , 0.47 ],  
[-10.297 , -1.616 , 6.204 , 0.47 ],  
[ -9.614 , ...,  
GL_STATIC_DRAW,  
)  
)  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 684, in <lambda>  
gw.mouseReleaseEvent = lambda e, s=self: s._dispatch_mouse_event(e,
"mouse_up")  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\mouse_modes\mousemodes.py", line 594, in
_dispatch_mouse_event  
f(MouseEvent(event, modifiers=modifiers))  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 59, in mouse_up  
self._undraw_drag_rectangle()  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\mouse_modes\std_modes.py", line 146, in
_undraw_drag_rectangle  
v.draw_xor_rectangle(dx, h-dy, x, h-y, self._xor_color)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\view.py", line 336, in draw_xor_rectangle  
self._rectangle_drawing = draw_xor_rectangle(self._render, x1, y1, x2, y2,
color, d)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\drawing.py", line 1672, in draw_xor_rectangle  
r.draw_front_buffer(True)  
File "C:\Program Files\ChimeraX 1.12rc202606060206\bin\Lib\site-
packages\chimerax\graphics\opengl.py", line 1322, in draw_front_buffer  
GL.glDrawBuffer(GL.GL_FRONT if front else GL.GL_BACK)  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'opera\xe7\xe3o inv\xe1lida',  
baseOperation = glDrawBuffer,  
cArguments = (GL_FRONT,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'opera\xe7\xe3o inv\xe1lida',  
baseOperation = glDrawBuffer,  
cArguments = (GL_FRONT,)  
)  
  
File "src/errorchecker.pyx", line 59, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  




OpenGL version: 4.6 (Core Profile) Mesa 24.1.0-devel (git-b3a9d3f842)
OpenGL renderer: D3D12 (Qualcomm(R) Adreno(TM) X1-45 GPU)
OpenGL vendor: Microsoft Corporation

Python: 3.11.9
Locale: pt_BR.cp1252
Qt version: PyQt6 6.10.2, Qt 6.10.0
Qt runtime version: 6.10.2
Qt platform: windows

Manufacturer: ASUSTeK COMPUTER INC.
Model: ASUS Zenbook A14 UX3407QA_UX3407QA
OS: Microsoft Windows 11 Home (Build 26200.8457)
Memory: 33,896,992,768
MaxProcessMemory: 137,438,953,344
CPU: 8 Snapdragon(R) X - X126100 - Qualcomm(R) Oryon(TM) CPU
OSLanguage: pt-BR

Installed Packages:
    accessible-pygments: 0.0.5
    aiohappyeyeballs: 2.6.2
    aiohttp: 3.13.4
    aiosignal: 1.4.0
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.13.0
    appdirs: 1.4.4
    asttokens: 3.0.1
    attrs: 26.1.0
    babel: 2.18.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 4.4.2
    bs4: 0.0.2
    build: 1.3.0
    certifi: 2026.5.20
    cftime: 1.6.5
    charset-normalizer: 3.4.7
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.8
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.2
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.67.1
    ChimeraX-AtomicLibrary: 14.4
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4.1
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.4
    ChimeraX-Cluster: 1.0
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.1
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.12rc202606060206
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.2.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.8.2
    ChimeraX-Label: 1.5
    ChimeraX-LightingGUI: 1.0
    ChimeraX-ListInfo: 1.3.1
    ChimeraX-Log: 1.2.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.3
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchAlign: 1.2
    ChimeraX-MatchMaker: 2.4.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MCPServer: 0.2.0
    ChimeraX-MDcrds: 2.19
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.3.9
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.23
    ChimeraX-ModelPanel: 1.6.1
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.4
    ChimeraX-OpenFold: 1.0
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.13
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.4
    ChimeraX-ProfileGrids: 1.6
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.8.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.3
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.3.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.12
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.18
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SNFG: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.4
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.50.8
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.6.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    click: 8.4.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.14.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.2.4
    debugpy: 1.8.21
    decorator: 5.3.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.63.0
    frozenlist: 1.8.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h11: 0.16.0
    h5py: 3.16.0
    html2text: 2025.4.15
    httpcore: 1.0.9
    httpx: 0.28.1
    httpx-sse: 0.4.3
    idna: 3.18
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 2.0.0
    iniconfig: 2.3.0
    ipykernel: 7.1.0
    ipython: 9.9.0
    ipython_pygments_lexers: 1.1.1
    jedi: 0.19.2
    Jinja2: 3.1.6
    jsonschema: 4.26.0
    jsonschema-specifications: 2025.9.1
    jupyter_client: 8.8.0
    jupyter_core: 5.9.1
    kiwisolver: 1.5.0
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.3
    matplotlib: 3.10.7
    matplotlib-inline: 0.2.2
    mcp: 1.18.0
    msgpack: 1.1.1
    multidict: 6.7.1
    narwhals: 2.22.1
    ndindex: 1.10.1
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.14.1
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.4.0
    OpenMM-CUDA-12: 8.4.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.7
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.10.0
    plotly: 6.8.0
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    propcache: 0.5.2
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydantic: 2.13.4
    pydantic-settings: 2.14.1
    pydantic_core: 2.46.4
    pydata-sphinx-theme: 0.18.0
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.5.1
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.3.2
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.10.2
    PyQt6-Qt6: 6.10.2
    PyQt6-WebEngine-commercial: 6.10.0
    PyQt6-WebEngine-Qt6: 6.10.2
    PyQt6_sip: 13.10.3
    pytest: 9.0.3
    pytest-cov: 7.1.0
    python-dateutil: 2.9.0.post0
    python-dotenv: 1.2.2
    python-multipart: 0.0.32
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2.2
    RandomWords: 0.4.0
    referencing: 0.37.0
    requests: 2.32.5
    roman-numerals: 4.1.0
    rpds-py: 2026.5.1
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.1.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8.4
    Sphinx: 9.0.4
    sphinx-autodoc-typehints: 3.6.1
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    sse-starlette: 3.4.4
    stack-data: 0.6.3
    starlette: 1.2.1
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 3.2.1
    threadpoolctl: 3.6.0
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.6
    tqdm: 4.68.1
    traitlets: 5.14.3
    typing-inspection: 0.4.2
    typing_extensions: 4.15.0
    tzdata: 2026.2
    Unidecode: 1.4.0
    urllib3: 2.7.0
    uvicorn: 0.49.0
    wcwidth: 0.8.1
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    WMI: 1.5.1
    yarl: 1.24.2