Session restore: Unknown class name 'SceneAnimation'

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Replace this text with list of actions that caused this problem to occur

Log:
UCSF ChimeraX version: 1.11.1 (2026-01-23)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/Structures/mPiezo1_yoda1_flat/mPiezo1_yoda1_open_trimer_R9.pdb"

Chain information for mPiezo1_yoda1_open_trimer_R9.pdb #1  
---  
Chain | Description  
A B C | No description available  
  

> set bgColor white

> graphics silhouettes true

> lighting soft

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/mpiezo1_yoda1_open_trimer_r9_tun_cl_013_1.stl"

Opened STL file mpiezo1_yoda1_open_trimer_r9_tun_cl_013_1.stl containing 85353
triangles  

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/mpiezo1_yoda1_open_trimer_r9_tun_cl_028_1.stl"

Opened STL file mpiezo1_yoda1_open_trimer_r9_tun_cl_028_1.stl containing 69345
triangles  

> close #2

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/mpiezo1_yoda1_open_trimer_r9_tun_cl_011_1.stl"

Opened STL file mpiezo1_yoda1_open_trimer_r9_tun_cl_011_1.stl containing 96813
triangles  

> select #2-3

2 models selected  

> color sel orange

> color #1 light grey

> color #1/A deep sky blue

> color #1/B purple

> color #1 light grey

> color #1/B deep sky blue

> select clear

> lighting flat

> lighting shadows true intensity 0.5

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/Maps/Open/mPiezo1_WT_open_yoda1_Composite_J294.mrc"

Opened mPiezo1_WT_open_yoda1_Composite_J294.mrc as #4, grid size 400,400,400,
pixel 1.16, shown at level 0.0453, step 2, values float32  

> volume #4 step 1

> volume #4 level 0.0694

> hide #3 models

> show #3 models

> transparency #4 70

> color zone #4 near #1 distance 6.96

> select ~sel & ##selected

Nothing selected  

> transparency #4 70

> hide #!1 models

> transparency #4 50

> lighting soft

> transparency #4 10

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting full

> transparency #4 10

> hide #!4 models

> show #!4 models

> transparency #4 50

> show #!1 models

> show target ab

> hide atoms

> show target ab

> hide #!4 models

> hide atoms

> lighting flat

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> hide #3 models

> hide #2 models

> show #!4 models

> hide #!4 models

> hide #!1 models

> close #2-3#1,4

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/Structures/mPiezo1_yoda1_flat/mPiezo1_yoda1_open_trimer_R9.pdb"

Chain information for mPiezo1_yoda1_open_trimer_R9.pdb #1  
---  
Chain | Description  
A B C | No description available  
  

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/mpiezo1_yoda1_open_trimer_r9_tun_cl_011_1.stl"
> "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/mpiezo1_yoda1_open_trimer_r9_tun_cl_028_1.stl"

Opened STL file mpiezo1_yoda1_open_trimer_r9_tun_cl_011_1.stl containing 96813
triangles  
Opened STL file mpiezo1_yoda1_open_trimer_r9_tun_cl_028_1.stl containing 69345
triangles  

"Unable to open monitor interface to \\\\\\\\.\\\DISPLAY1:" "Unknown error
0xe0000225."  

[Repeated 5 time(s)]

> hide #!1 models

> hide #2 models

> hide #3 models

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/Maps/Intermediate/mPiezo1_Dooku1_Blade_J672_007_volume_map_sharp.cmap"

Opened mPiezo1_Dooku1_Blade_J672_007_volume_map_sharp.cmap as #4, grid size
400,400,400, pixel 1.16, shown at level 0.109, step 2, values float32  

> volume #4 step 1

> volume #4 level 0.3237

> volume #4 level 0.2549

> volume #4 level 0.4011

> volume #4 level 0.2807

> lighting soft

> close #2-3#1,4

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/bril_tetramer_flipped_resampled_C4_J134.mrc"

Opened bril_tetramer_flipped_resampled_C4_J134.mrc as #1, grid size
256,256,256, pixel 1.18, shown at level 0.242, step 1, values float32  

> volume #1 level 0.4731

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/bril_tetramer_R4.pdb"

Chain information for bril_tetramer_R4.pdb #2  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!1 models

> hide #!2 models

> open "C:/Users/Jonathan Mount/Desktop/psftp/J45_008_volume_map.mrc"

Opened J45_008_volume_map.mrc as #3, grid size 400,400,400, pixel 1.16, shown
at level 0.132, step 2, values float32  

> volume #1 level 0.4947

> close #1

> close #2

> volume #3 step 1

> volume #3 level 0.1674

> volume #3 level 0.1867

> open "C:/Users/Jonathan
> Mount/Desktop/psftp/piezo1_Dooku1/J712_005_volume_map.mrc"

Opened J712_005_volume_map.mrc as #1, grid size 400,400,400, pixel 1.16, shown
at level 0.0269, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.04008

> close #1

> open "C:/Users/Jonathan
> Mount/Desktop/psftp/piezo1_Dooku1/J660_006_volume_map.mrc"

Opened J660_006_volume_map.mrc as #1, grid size 400,400,400, pixel 1.16, shown
at level 0.0875, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.1136

> close #1

> open "C:/Users/Jonathan
> Mount/Desktop/piezo1_paper/Structures/mPiezo1_Dooku1/J647_008_volume_map.mrc"

Opened J647_008_volume_map.mrc as #1, grid size 400,400,400, pixel 1.16, shown
at level 0.114, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.173

> select #

Expected an objects specifier or a keyword  

> select #3

2 models selected  

> ui mousemode right "rotate selected models"

> view matrix models
> #3,0.87736,-0.4713,-0.090039,151.45,0.47019,0.88189,-0.034518,-72.895,0.095673,-0.012051,0.99534,-17.993

> view matrix models
> #3,0.87736,-0.4713,-0.090039,161.41,0.47019,0.88189,-0.034518,-73.182,0.095673,-0.012051,0.99534,-9.5506

> view matrix models
> #3,0.89239,-0.44258,-0.088111,151.3,0.44398,0.89603,-0.0041634,-77.415,0.080793,-0.035404,0.9961,-1.2717

> view matrix models
> #3,0.87922,-0.47628,0.011144,138.39,0.47641,0.87893,-0.022744,-76.704,0.0010377,0.025306,0.99968,2.7752

> view matrix models
> #3,0.87922,-0.47628,0.011144,137.38,0.47641,0.87893,-0.022744,-79.813,0.0010377,0.025306,0.99968,1.5799

> view matrix models
> #3,0.88679,-0.46087,-0.034741,143.05,0.46156,0.88698,0.015041,-87.039,0.023882,-0.029373,0.99928,8.3877

> view matrix models
> #3,0.88679,-0.46087,-0.034741,141.41,0.46156,0.88698,0.015041,-82.45,0.023882,-0.029373,0.99928,10.182

> ui tool show "Fit in Map"

> fitmap #3 inMap #1

Fit map J45_008_volume_map.mrc in map J647_008_volume_map.mrc using 149725
points  
correlation = 0.9902, correlation about mean = 0.8837, overlap = 9872  
steps = 68, shift = 2, angle = 3.16 degrees  
  
Position of J45_008_volume_map.mrc (#3) relative to J647_008_volume_map.mrc
(#1) coordinates:  
Matrix rotation and translation  
0.90494773 -0.42552273 0.00005263 120.75776067  
0.42552273 0.90494773 -0.00003831 -76.66522050  
-0.00003132 0.00005706 1.00000000 8.79499280  
Axis 0.00011207 0.00009864 0.99999999  
Axis point 231.98483823 231.96431712 0.00000000  
Rotation angle (degrees) 25.18375548  
Shift along axis 8.80096397  
  

> select clear

> volume #3 level 0.1803

> volume #3 level 0.1771

> close #1,3

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/J130_009_volume_map_half_A.mrc"
> "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/J130_009_volume_map_half_B.mrc"
> "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/J134_map_sharp.mrc"

Opened J130_009_volume_map_half_A.mrc as #1.1, grid size 256,256,256, pixel
1.18, shown at level 0.279, step 1, values float32  
Opened J130_009_volume_map_half_B.mrc as #1.2, grid size 256,256,256, pixel
1.18, shown at level 0.279, step 1, values float32  
Opened J134_map_sharp.mrc as #1.3, grid size 256,256,256, pixel 1.18, shown at
level 0.242, step 1, values float32  

> volume #1.2 level 0.4155

> volume #1.1 level 0.4583

> close #1.1

> close #1.2

> volume #1.3 level 0.3787

> open "C:/Users/Jonathan
> Mount/Desktop/sphcn/BRIL/FlowChart/J122/J122_005_volume_map.mrc"

Opened J122_005_volume_map.mrc as #2, grid size 256,256,256, pixel 1.18, shown
at level 0.233, step 1, values float32  

> volume #2 level 0.3448

> close #1

> close #2

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/bril_tetramer_flipped_resampled_C4_J134.mrc"
> "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/J122_005_volume_map_half_A.mrc"
> "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/J122_005_volume_map_half_B.mrc"

Opened bril_tetramer_flipped_resampled_C4_J134.mrc as #1.1, grid size
256,256,256, pixel 1.18, shown at level 0.242, step 1, values float32  
Opened J122_005_volume_map_half_A.mrc as #1.2, grid size 256,256,256, pixel
1.18, shown at level 0.237, step 1, values float32  
Opened J122_005_volume_map_half_B.mrc as #1.3, grid size 256,256,256, pixel
1.18, shown at level 0.238, step 1, values float32  

> vop flip #1.2

Opened J122_005_volume_map_half_A.mrc z flip as #2, grid size 256,256,256,
pixel 1.18, shown at step 1, values float32  

> vop flip #1.3

Opened J122_005_volume_map_half_B.mrc z flip as #3, grid size 256,256,256,
pixel 1.18, shown at step 1, values float32  

> vop resample #2 ongrid #1.1

Opened J122_005_volume_map_half_A.mrc z flip resampled as #4, grid size
256,256,256, pixel 1.18, shown at step 1, values float32  

> vop resample #3 ongrid #1.1

Opened J122_005_volume_map_half_B.mrc z flip resampled as #5, grid size
256,256,256, pixel 1.18, shown at step 1, values float32  

> close #2-3

> close #1.2-3

> save "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/flipped_resampled_J122_005_volume_map_half_A.mrc"
> models #4

> save "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/flipped_resampled_J122_005_volume_map_half_B.mrc"
> models #5

> volume #4 level 0.3877

> volume #5 level 0.4153

> volume #1.1 level 0.4791

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/bril_tetramer_R4.pdb"

Chain information for bril_tetramer_R4.pdb #2  
---  
Chain | Description  
A B C D | No description available  
  

> view #2

> turn x -90

[Repeated 3 time(s)]

> color #2 light grey

> color #2/A deep sky blue

> color #2/A dark cyan

> color zone #1.1 near #2 distance 7.1

> turn y 9

[Repeated 20 time(s)]

> view #2

> view orient

> turn x -90

> turn y 90

[Repeated 5 time(s)]

> turn y 45

> hide #!2 models

> lighting soft

> lighting flat

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting soft

> save "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/deposition/WT/sphcn_WT_BRIL.png" width
> 2400 height 2400 supersample 3 transparentBackground true

> volume #1.1 level 0.48

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/figure_5/JM_Figure5_AB_260512.cxs"

Opened doublemut_C4_J362_map_sharp.mrc as #4, grid size 256,256,256, pixel
1.18, shown at level 0.432, step 1, values float32  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\session.py", line 847, in restore  
cls = name.class_of(self)  
^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\session.py", line 228, in class_of  
cls = bundle_info.get_class(class_name, session.logger)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 487, in get_class  
return f(class_name)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\animations\\__init__.py", line 24, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'SceneAnimation'  
  

> view name session-start

opened ChimeraX session  

> open "C:/Users/Jonathan
> Mount/Desktop/JM_spHCN_figures_260519/figure_5/JM_Figure5_ABCD_260512.cxs"

Opened doublemut_C4_J362_map_sharp.mrc as #4, grid size 256,256,256, pixel
1.18, shown at level 0.432, step 1, values float32  
Unable to restore session, resetting.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\session.py", line 847, in restore  
cls = name.class_of(self)  
^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\session.py", line 228, in class_of  
cls = bundle_info.get_class(class_name, session.logger)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\core\toolshed\info.py", line 487, in get_class  
return f(class_name)  
^^^^^^^^^^^^^  
File "C:\Program Files\ChimeraX 1.11.1\bin\Lib\site-
packages\chimerax\animations\\__init__.py", line 24, in get_class  
raise ValueError("Unknown class name '%s'" % class_name)  
ValueError: Unknown class name 'SceneAnimation'  
  

> view name session-start

opened ChimeraX session  




OpenGL version: 3.3.0 - Build 27.20.100.9664
OpenGL renderer: Intel(R) UHD Graphics 620
OpenGL vendor: Intel

Python: 3.11.9
Locale: en_US.cp1252
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows

Manufacturer: Dell Inc.
Model: XPS 13 9380
OS: Microsoft Windows 11 Home (Build 26200)
Memory: 16,912,338,944
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8565U CPU @ 1.80GHz
OSLanguage: en-US

Installed Packages:
    aiohappyeyeballs: 2.6.1
    aiohttp: 3.13.1
    aiosignal: 1.4.0
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.12.1
    appdirs: 1.4.4
    asttokens: 3.0.1
    attrs: 25.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 3.12.2
    build: 1.3.0
    certifi: 2026.1.4
    cftime: 1.6.5
    charset-normalizer: 3.4.4
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.8
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.1.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.61.4
    ChimeraX-AtomicLibrary: 14.2.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-Clipper: 0.26.1
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ISOLDE: 1.11.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.3
    ChimeraX-Label: 1.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MCPServer: 0.1.0
    ChimeraX-MDcrds: 2.17.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.3.2
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.2
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.12
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.4
    ChimeraX-ProfileGrids: 1.4.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.5
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.3
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.3.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.10
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.3
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.49.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.5.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    click: 8.3.1
    colorama: 0.4.6
    comm: 0.2.3
    comtypes: 1.4.11
    contourpy: 1.3.3
    coverage: 7.13.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.4
    debugpy: 1.8.19
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.61.1
    frozenlist: 1.8.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h11: 0.16.0
    h5py: 3.15.1
    html2text: 2025.4.15
    httpcore: 1.0.9
    httpx: 0.28.1
    httpx-sse: 0.4.3
    idna: 3.11
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.3.0
    ipykernel: 6.30.1
    ipython: 9.5.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.8
    jedi: 0.19.2
    Jinja2: 3.1.6
    jsonschema: 4.26.0
    jsonschema-specifications: 2025.9.1
    jupyter_client: 8.6.3
    jupyter_core: 5.9.1
    jupyterlab_widgets: 3.0.16
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.3
    matplotlib: 3.10.7
    matplotlib-inline: 0.2.1
    mcp: 1.18.0
    msgpack: 1.1.1
    multidict: 6.7.0
    ndindex: 1.10.1
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.14.1
    numpy: 1.26.4
    nvidia-nvjitlink-cu12: 12.9.86
    OpenMM: 8.2.0
    OpenMM-CUDA-12: 8.2.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.5
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.5.1
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    propcache: 0.4.1
    psutil: 7.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydantic: 2.12.5
    pydantic-settings: 2.12.0
    pydantic_core: 2.41.5
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.6
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.3.2
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.9.1
    PyQt6-Qt6: 6.9.2
    PyQt6-WebEngine-commercial: 6.9.0
    PyQt6-WebEngine-Qt6: 6.9.2
    PyQt6_sip: 13.10.2
    pytest: 9.0.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    python-dotenv: 1.2.1
    python-multipart: 0.0.21
    pywin32: 311
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2
    RandomWords: 0.4.0
    referencing: 0.37.0
    requests: 2.32.5
    roman-numerals: 4.1.0
    roman-numerals-py: 4.1.0
    rpds-py: 0.30.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8.3
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.2.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    sse-starlette: 3.2.0
    stack-data: 0.6.3
    starlette: 0.52.1
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.4
    traitlets: 5.14.3
    typing-inspection: 0.4.2
    typing_extensions: 4.15.0
    tzdata: 2025.3
    urllib3: 2.6.3
    uvicorn: 0.40.0
    wcwidth: 0.3.2
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.15
    WMI: 1.5.1
    yarl: 1.22.0