![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 18 hours ago
Closed 14 hours ago
#20395 closed defect (duplicate)
Crash in QObject::event in Qt 6.10.1
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.3-arm64-arm-64bit
ChimeraX Version: 1.12rc202605192128 (2026-05-19 21:28:39 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000204af7080 (most recent call first):
File "/private/var/folders/dt/rckv67dx1pg9t1my06vk_fpm0000gn/T/AppTranslocation/F5732700-B327-4237-9DB2-15CE16DDD4A4/d/ChimeraX-1.12-rc2026.05.20.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 424 in event_loop
File "/private/var/folders/dt/rckv67dx1pg9t1my06vk_fpm0000gn/T/AppTranslocation/F5732700-B327-4237-9DB2-15CE16DDD4A4/d/ChimeraX-1.12-rc2026.05.20.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/private/var/folders/dt/rckv67dx1pg9t1my06vk_fpm0000gn/T/AppTranslocation/F5732700-B327-4237-9DB2-15CE16DDD4A4/d/ChimeraX-1.12-rc2026.05.20.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, psutil._psutil_osx, psutil._psutil_posix, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util (total: 39)
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--->
__TEXT 10262c000-102630000 [ 16K] r-x\/r-x SM=COW \/var\/folders\/*\/ChimeraX-1.12-rc2026.05.20.app\/Contents\/MacOS\/ChimeraX",
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===== Log before crash start =====
UCSF ChimeraX version: 1.12rc202605192128 (2026-05-19)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.12rc202605192128 (2026-05-19)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/prensesnisanur/Desktop/darunavir.pdbqt
Summary of feedback from opening /Users/prensesnisanur/Desktop/darunavir.pdbqt
---
warnings | Ignored bad PDB record found on line 1
REMARK Name = darunavir.pdb
Ignored bad PDB record found on line 2
REMARK 2 active torsions:
Ignored bad PDB record found on line 3
REMARK status: ('A' for Active; 'I' for Inactive)
Ignored bad PDB record found on line 4
REMARK 1 A between atoms: C_1 and C_3
Ignored bad PDB record found on line 5
REMARK 2 A between atoms: C_1 and O_4
5 messages similar to the above omitted
Opened darunavir.pdbqt containing 1 structures (5 atoms, 4 bonds)
> open /Users/prensesnisanur/Desktop/protein.pdbqt
Summary of feedback from opening /Users/prensesnisanur/Desktop/protein.pdbqt
---
warnings | Ignored bad PDB record found on line 1
REMARK Name = protein.pdb
Ignored bad PDB record found on line 2
REMARK 350 active torsions:
Ignored bad PDB record found on line 3
REMARK status: ('A' for Active; 'I' for Inactive)
Ignored bad PDB record found on line 4
REMARK 1 A between atoms: CA_2 and C_3
Ignored bad PDB record found on line 5
REMARK 2 A between atoms: N_8 and CA_9
843 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 1009
ENDROOT
Ignored bad PDB record found on line 1010
BRANCH 4 5
Duplicate atom serial number found: 5
Duplicate atom serial number found: 6
Ignored bad PDB record found on line 1013
ENDBRANCH 4 5
Ignored bad PDB record found on line 1014
BRANCH 3 7
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 1016
BRANCH 7 8
Duplicate atom serial number found: 8
Duplicate atom serial number found: 9
Ignored bad PDB record found on line 1019
ENDBRANCH 7 8
Ignored bad PDB record found on line 1020
ENDBRANCH 3 7
Ignored bad PDB record found on line 1021
TORSDOF 3
Ignored bad PDB record found on line 1022
REMARK Name = protein.pdb
Ignored bad PDB record found on line 1023
REMARK 350 active torsions:
352 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Ignored bad PDB record found on line 1380
ENDROOT
Ignored bad PDB record found on line 1381
TORSDOF 0
Ignored bad PDB record found on line 1382
REMARK Name = protein.pdb
Ignored bad PDB record found on line 1383
REMARK 350 active torsions:
Ignored bad PDB record found on line 1384
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
6 messages similar to the above omitted
Ignored bad PDB record found on line 1749
ENDROOT
Ignored bad PDB record found on line 1750
TORSDOF 0
Ignored bad PDB record found on line 1751
REMARK Name = protein.pdb
Ignored bad PDB record found on line 1752
REMARK 350 active torsions:
Ignored bad PDB record found on line 1753
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 2108
ENDROOT
Ignored bad PDB record found on line 2109
TORSDOF 0
Ignored bad PDB record found on line 2110
REMARK Name = protein.pdb
Ignored bad PDB record found on line 2111
REMARK 350 active torsions:
Ignored bad PDB record found on line 2112
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 2467
ENDROOT
Ignored bad PDB record found on line 2468
BRANCH 1 2
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 2471
ENDBRANCH 1 2
Ignored bad PDB record found on line 2472
BRANCH 1 4
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
Ignored bad PDB record found on line 2475
ENDBRANCH 1 4
Ignored bad PDB record found on line 2476
TORSDOF 2
Ignored bad PDB record found on line 2477
REMARK Name = protein.pdb
Ignored bad PDB record found on line 2478
REMARK 350 active torsions:
Ignored bad PDB record found on line 2479
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 2836
ENDROOT
Ignored bad PDB record found on line 2837
BRANCH 3 4
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 2839
BRANCH 4 5
Duplicate atom serial number found: 5
Duplicate atom serial number found: 6
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 2843
BRANCH 7 8
Duplicate atom serial number found: 8
Ignored bad PDB record found on line 2845
BRANCH 8 9
Duplicate atom serial number found: 9
Duplicate atom serial number found: 10
Duplicate atom serial number found: 11
Ignored bad PDB record found on line 2849
BRANCH 11 12
Duplicate atom serial number found: 12
Duplicate atom serial number found: 13
Ignored bad PDB record found on line 2852
BRANCH 12 14
Duplicate atom serial number found: 14
Duplicate atom serial number found: 15
Duplicate atom serial number found: 16
Ignored bad PDB record found on line 2856
BRANCH 16 17
Duplicate atom serial number found: 17
Ignored bad PDB record found on line 2858
BRANCH 17 18
Duplicate atom serial number found: 18
Duplicate atom serial number found: 19
Duplicate atom serial number found: 20
Ignored bad PDB record found on line 2862
BRANCH 20 21
Duplicate atom serial number found: 21
Duplicate atom serial number found: 22
Ignored bad PDB record found on line 2865
BRANCH 22 23
Duplicate atom serial number found: 23
Duplicate atom serial number found: 24
Ignored bad PDB record found on line 2868
BRANCH 23 25
Duplicate atom serial number found: 25
Ignored bad PDB record found on line 2870
BRANCH 25 26
Duplicate atom serial number found: 26
Ignored bad PDB record found on line 2872
BRANCH 26 27
Duplicate atom serial number found: 27
Duplicate atom serial number found: 28
Ignored bad PDB record found on line 2875
ENDBRANCH 26 27
Ignored bad PDB record found on line 2876
ENDBRANCH 25 26
Ignored bad PDB record found on line 2877
ENDBRANCH 23 25
Ignored bad PDB record found on line 2878
ENDBRANCH 22 23
Ignored bad PDB record found on line 2879
ENDBRANCH 20 21
2 messages similar to the above omitted
Duplicate atom serial number found: 29
Ignored bad PDB record found on line 2883
BRANCH 29 30
Duplicate atom serial number found: 30
Duplicate atom serial number found: 31
Duplicate atom serial number found: 32
Ignored bad PDB record found on line 2887
ENDBRANCH 29 30
Ignored bad PDB record found on line 2888
ENDBRANCH 17 29
Ignored bad PDB record found on line 2889
ENDBRANCH 16 17
Ignored bad PDB record found on line 2890
ENDBRANCH 12 14
Ignored bad PDB record found on line 2891
ENDBRANCH 11 12
4 messages similar to the above omitted
Duplicate atom serial number found: 33
Duplicate atom serial number found: 34
Duplicate atom serial number found: 35
Ignored bad PDB record found on line 2899
ENDBRANCH 4 33
Ignored bad PDB record found on line 2900
ENDBRANCH 3 4
Ignored bad PDB record found on line 2901
BRANCH 1 36
Duplicate atom serial number found: 36
Ignored bad PDB record found on line 2903
BRANCH 36 39
Duplicate atom serial number found: 37
Duplicate atom serial number found: 38
Duplicate atom serial number found: 39
Ignored bad PDB record found on line 2907
BRANCH 37 40
Duplicate atom serial number found: 40
Ignored bad PDB record found on line 2909
BRANCH 40 43
Duplicate atom serial number found: 41
Duplicate atom serial number found: 42
Duplicate atom serial number found: 43
Ignored bad PDB record found on line 2913
BRANCH 41 44
Duplicate atom serial number found: 44
Ignored bad PDB record found on line 2915
BRANCH 44 47
Duplicate atom serial number found: 45
Duplicate atom serial number found: 46
Duplicate atom serial number found: 47
Ignored bad PDB record found on line 2919
BRANCH 45 48
Duplicate atom serial number found: 48
Duplicate atom serial number found: 49
Ignored bad PDB record found on line 2922
BRANCH 48 52
Duplicate atom serial number found: 50
Duplicate atom serial number found: 51
Duplicate atom serial number found: 52
Ignored bad PDB record found on line 2926
ENDBRANCH 48 52
Ignored bad PDB record found on line 2927
ENDBRANCH 45 48
Ignored bad PDB record found on line 2928
ENDBRANCH 44 47
Ignored bad PDB record found on line 2929
BRANCH 44 53
Duplicate atom serial number found: 53
Ignored bad PDB record found on line 2931
BRANCH 53 54
Duplicate atom serial number found: 54
Duplicate atom serial number found: 55
Duplicate atom serial number found: 56
Ignored bad PDB record found on line 2935
ENDBRANCH 53 54
Ignored bad PDB record found on line 2936
ENDBRANCH 44 53
Ignored bad PDB record found on line 2937
ENDBRANCH 41 44
Ignored bad PDB record found on line 2938
ENDBRANCH 40 43
Ignored bad PDB record found on line 2939
BRANCH 40 57
Duplicate atom serial number found: 57
Ignored bad PDB record found on line 2941
BRANCH 57 58
Duplicate atom serial number found: 58
Duplicate atom serial number found: 59
Duplicate atom serial number found: 60
Ignored bad PDB record found on line 2945
ENDBRANCH 57 58
Ignored bad PDB record found on line 2946
ENDBRANCH 40 57
Ignored bad PDB record found on line 2947
ENDBRANCH 37 40
Ignored bad PDB record found on line 2948
ENDBRANCH 36 39
Ignored bad PDB record found on line 2949
BRANCH 36 61
Duplicate atom serial number found: 61
Ignored bad PDB record found on line 2951
BRANCH 61 62
Duplicate atom serial number found: 62
Duplicate atom serial number found: 63
Duplicate atom serial number found: 64
Ignored bad PDB record found on line 2955
ENDBRANCH 61 62
Ignored bad PDB record found on line 2956
ENDBRANCH 36 61
Ignored bad PDB record found on line 2957
ENDBRANCH 1 36
Ignored bad PDB record found on line 2958
TORSDOF 30
Ignored bad PDB record found on line 2959
REMARK Name = protein.pdb
353 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Ignored bad PDB record found on line 3317
ENDROOT
Ignored bad PDB record found on line 3318
TORSDOF 0
Ignored bad PDB record found on line 3319
REMARK Name = protein.pdb
Ignored bad PDB record found on line 3320
REMARK 350 active torsions:
Ignored bad PDB record found on line 3321
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 3678
ENDROOT
Ignored bad PDB record found on line 3679
TORSDOF 0
Ignored bad PDB record found on line 3680
REMARK Name = protein.pdb
Ignored bad PDB record found on line 3681
REMARK 350 active torsions:
Ignored bad PDB record found on line 3682
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 4039
ENDROOT
Ignored bad PDB record found on line 4040
TORSDOF 0
Ignored bad PDB record found on line 4041
REMARK Name = protein.pdb
Ignored bad PDB record found on line 4042
REMARK 350 active torsions:
Ignored bad PDB record found on line 4043
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
2 messages similar to the above omitted
Ignored bad PDB record found on line 4404
ENDROOT
Ignored bad PDB record found on line 4405
BRANCH 4 8
Duplicate atom serial number found: 8
Duplicate atom serial number found: 9
Duplicate atom serial number found: 10
Ignored bad PDB record found on line 4409
BRANCH 10 11
Duplicate atom serial number found: 11
Ignored bad PDB record found on line 4411
BRANCH 11 12
Duplicate atom serial number found: 12
Duplicate atom serial number found: 13
Duplicate atom serial number found: 14
Ignored bad PDB record found on line 4415
BRANCH 14 15
Duplicate atom serial number found: 15
Ignored bad PDB record found on line 4417
BRANCH 15 16
Duplicate atom serial number found: 16
Duplicate atom serial number found: 17
Duplicate atom serial number found: 18
Ignored bad PDB record found on line 4421
BRANCH 18 19
Duplicate atom serial number found: 19
Ignored bad PDB record found on line 4423
BRANCH 19 20
Duplicate atom serial number found: 20
Duplicate atom serial number found: 21
Duplicate atom serial number found: 22
Ignored bad PDB record found on line 4427
BRANCH 22 23
Duplicate atom serial number found: 23
Ignored bad PDB record found on line 4429
BRANCH 23 24
Duplicate atom serial number found: 24
Duplicate atom serial number found: 25
Duplicate atom serial number found: 26
Duplicate atom serial number found: 27
Duplicate atom serial number found: 28
2 messages similar to the above omitted
Ignored bad PDB record found on line 4437
BRANCH 27 31
Duplicate atom serial number found: 31
Duplicate atom serial number found: 32
Duplicate atom serial number found: 33
Ignored bad PDB record found on line 4441
BRANCH 33 34
Duplicate atom serial number found: 34
Ignored bad PDB record found on line 4443
BRANCH 34 35
Duplicate atom serial number found: 35
Duplicate atom serial number found: 36
Duplicate atom serial number found: 37
Ignored bad PDB record found on line 4447
BRANCH 37 38
Duplicate atom serial number found: 38
Duplicate atom serial number found: 39
Ignored bad PDB record found on line 4450
ENDBRANCH 37 38
Ignored bad PDB record found on line 4451
ENDBRANCH 34 35
Ignored bad PDB record found on line 4452
BRANCH 34 40
Duplicate atom serial number found: 40
Ignored bad PDB record found on line 4454
BRANCH 40 41
Duplicate atom serial number found: 41
Ignored bad PDB record found on line 4456
BRANCH 41 42
Duplicate atom serial number found: 42
Ignored bad PDB record found on line 4458
BRANCH 42 43
Duplicate atom serial number found: 43
Duplicate atom serial number found: 44
Ignored bad PDB record found on line 4461
ENDBRANCH 42 43
Ignored bad PDB record found on line 4462
ENDBRANCH 41 42
Ignored bad PDB record found on line 4463
ENDBRANCH 40 41
Ignored bad PDB record found on line 4464
ENDBRANCH 34 40
Ignored bad PDB record found on line 4465
ENDBRANCH 33 34
3 messages similar to the above omitted
Duplicate atom serial number found: 45
Ignored bad PDB record found on line 4470
BRANCH 45 46
Duplicate atom serial number found: 46
Ignored bad PDB record found on line 4472
BRANCH 46 47
Duplicate atom serial number found: 47
Ignored bad PDB record found on line 4474
BRANCH 47 48
Duplicate atom serial number found: 48
Duplicate atom serial number found: 49
Ignored bad PDB record found on line 4477
ENDBRANCH 47 48
Ignored bad PDB record found on line 4478
ENDBRANCH 46 47
Ignored bad PDB record found on line 4479
ENDBRANCH 45 46
Ignored bad PDB record found on line 4480
ENDBRANCH 23 45
Ignored bad PDB record found on line 4481
ENDBRANCH 22 23
2 messages similar to the above omitted
Duplicate atom serial number found: 50
Ignored bad PDB record found on line 4485
BRANCH 50 51
Duplicate atom serial number found: 51
Duplicate atom serial number found: 52
Duplicate atom serial number found: 53
Duplicate atom serial number found: 54
Duplicate atom serial number found: 55
4 messages similar to the above omitted
Ignored bad PDB record found on line 4495
ENDBRANCH 50 51
Ignored bad PDB record found on line 4496
ENDBRANCH 19 50
Ignored bad PDB record found on line 4497
ENDBRANCH 18 19
Ignored bad PDB record found on line 4498
ENDBRANCH 15 16
Ignored bad PDB record found on line 4499
BRANCH 15 60
Duplicate atom serial number found: 60
Ignored bad PDB record found on line 4501
BRANCH 60 61
Duplicate atom serial number found: 61
Ignored bad PDB record found on line 4503
BRANCH 61 62
Duplicate atom serial number found: 62
Ignored bad PDB record found on line 4505
BRANCH 62 63
Duplicate atom serial number found: 63
Duplicate atom serial number found: 64
Duplicate atom serial number found: 65
Duplicate atom serial number found: 66
Ignored bad PDB record found on line 4510
ENDBRANCH 62 63
Ignored bad PDB record found on line 4511
ENDBRANCH 61 62
Ignored bad PDB record found on line 4512
ENDBRANCH 60 61
Ignored bad PDB record found on line 4513
ENDBRANCH 15 60
Ignored bad PDB record found on line 4514
ENDBRANCH 14 15
4 messages similar to the above omitted
Duplicate atom serial number found: 67
Ignored bad PDB record found on line 4520
BRANCH 67 70
Duplicate atom serial number found: 68
Duplicate atom serial number found: 69
Duplicate atom serial number found: 70
Ignored bad PDB record found on line 4524
BRANCH 68 71
Duplicate atom serial number found: 71
Ignored bad PDB record found on line 4526
BRANCH 71 74
Duplicate atom serial number found: 72
Duplicate atom serial number found: 73
Duplicate atom serial number found: 74
Ignored bad PDB record found on line 4530
BRANCH 72 75
Duplicate atom serial number found: 75
Ignored bad PDB record found on line 4532
BRANCH 75 78
Duplicate atom serial number found: 76
Duplicate atom serial number found: 77
Duplicate atom serial number found: 78
Ignored bad PDB record found on line 4536
BRANCH 76 79
Duplicate atom serial number found: 79
Ignored bad PDB record found on line 4538
BRANCH 79 82
Duplicate atom serial number found: 80
Duplicate atom serial number found: 81
Duplicate atom serial number found: 82
Ignored bad PDB record found on line 4542
BRANCH 80 83
Duplicate atom serial number found: 83
Ignored bad PDB record found on line 4544
BRANCH 83 86
Duplicate atom serial number found: 84
Duplicate atom serial number found: 85
Duplicate atom serial number found: 86
Ignored bad PDB record found on line 4548
BRANCH 84 87
Duplicate atom serial number found: 87
Ignored bad PDB record found on line 4550
BRANCH 87 90
Duplicate atom serial number found: 88
Duplicate atom serial number found: 89
Duplicate atom serial number found: 90
Ignored bad PDB record found on line 4554
BRANCH 88 91
Duplicate atom serial number found: 91
Ignored bad PDB record found on line 4556
BRANCH 91 92
Duplicate atom serial number found: 92
Duplicate atom serial number found: 93
Duplicate atom serial number found: 94
Ignored bad PDB record found on line 4560
ENDBRANCH 91 92
Ignored bad PDB record found on line 4561
BRANCH 91 97
Duplicate atom serial number found: 95
Duplicate atom serial number found: 96
Duplicate atom serial number found: 97
Ignored bad PDB record found on line 4565
BRANCH 95 98
Duplicate atom serial number found: 98
Ignored bad PDB record found on line 4567
BRANCH 98 101
Duplicate atom serial number found: 99
Duplicate atom serial number found: 100
Duplicate atom serial number found: 101
Ignored bad PDB record found on line 4571
ENDBRANCH 98 101
Ignored bad PDB record found on line 4572
BRANCH 98 102
Duplicate atom serial number found: 102
Duplicate atom serial number found: 103
Duplicate atom serial number found: 104
Ignored bad PDB record found on line 4576
ENDBRANCH 98 102
Ignored bad PDB record found on line 4577
ENDBRANCH 95 98
Ignored bad PDB record found on line 4578
ENDBRANCH 91 97
Ignored bad PDB record found on line 4579
ENDBRANCH 88 91
Ignored bad PDB record found on line 4580
ENDBRANCH 87 90
1 messages similar to the above omitted
Duplicate atom serial number found: 105
Duplicate atom serial number found: 106
Ignored bad PDB record found on line 4584
BRANCH 105 107
Duplicate atom serial number found: 107
Duplicate atom serial number found: 108
Ignored bad PDB record found on line 4587
ENDBRANCH 105 107
Ignored bad PDB record found on line 4588
ENDBRANCH 87 105
Ignored bad PDB record found on line 4589
ENDBRANCH 84 87
Ignored bad PDB record found on line 4590
ENDBRANCH 83 86
Ignored bad PDB record found on line 4591
BRANCH 83 109
Duplicate atom serial number found: 109
Ignored bad PDB record found on line 4593
BRANCH 109 110
Duplicate atom serial number found: 110
Ignored bad PDB record found on line 4595
BRANCH 110 111
Duplicate atom serial number found: 111
Duplicate atom serial number found: 112
Duplicate atom serial number found: 113
Ignored bad PDB record found on line 4599
ENDBRANCH 110 111
Ignored bad PDB record found on line 4600
ENDBRANCH 109 110
Ignored bad PDB record found on line 4601
ENDBRANCH 83 109
Ignored bad PDB record found on line 4602
ENDBRANCH 80 83
Ignored bad PDB record found on line 4603
ENDBRANCH 79 82
1 messages similar to the above omitted
Duplicate atom serial number found: 114
Ignored bad PDB record found on line 4606
BRANCH 114 115
Duplicate atom serial number found: 115
Ignored bad PDB record found on line 4608
BRANCH 115 116
Duplicate atom serial number found: 116
Duplicate atom serial number found: 117
Duplicate atom serial number found: 118
Ignored bad PDB record found on line 4612
ENDBRANCH 115 116
Ignored bad PDB record found on line 4613
ENDBRANCH 114 115
Ignored bad PDB record found on line 4614
ENDBRANCH 79 114
Ignored bad PDB record found on line 4615
ENDBRANCH 76 79
Ignored bad PDB record found on line 4616
ENDBRANCH 75 78
1 messages similar to the above omitted
Duplicate atom serial number found: 119
Ignored bad PDB record found on line 4619
BRANCH 119 120
Duplicate atom serial number found: 120
Ignored bad PDB record found on line 4621
BRANCH 120 121
Duplicate atom serial number found: 121
Duplicate atom serial number found: 122
Ignored bad PDB record found on line 4624
ENDBRANCH 120 121
Ignored bad PDB record found on line 4625
ENDBRANCH 119 120
Ignored bad PDB record found on line 4626
ENDBRANCH 75 119
Ignored bad PDB record found on line 4627
ENDBRANCH 72 75
Ignored bad PDB record found on line 4628
ENDBRANCH 71 74
1 messages similar to the above omitted
Duplicate atom serial number found: 123
Duplicate atom serial number found: 124
Ignored bad PDB record found on line 4632
ENDBRANCH 71 123
Ignored bad PDB record found on line 4633
ENDBRANCH 68 71
Ignored bad PDB record found on line 4634
ENDBRANCH 67 70
Ignored bad PDB record found on line 4635
BRANCH 67 125
Duplicate atom serial number found: 125
Ignored bad PDB record found on line 4637
BRANCH 125 126
Duplicate atom serial number found: 126
Duplicate atom serial number found: 127
Duplicate atom serial number found: 128
Ignored bad PDB record found on line 4641
ENDBRANCH 125 126
Ignored bad PDB record found on line 4642
ENDBRANCH 67 125
Ignored bad PDB record found on line 4643
ENDBRANCH 1 67
Ignored bad PDB record found on line 4644
TORSDOF 59
Ignored bad PDB record found on line 4645
REMARK Name = protein.pdb
353 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 5002
ENDROOT
Ignored bad PDB record found on line 5003
TORSDOF 0
Ignored bad PDB record found on line 5004
REMARK Name = protein.pdb
Ignored bad PDB record found on line 5005
REMARK 350 active torsions:
Ignored bad PDB record found on line 5006
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Ignored bad PDB record found on line 5362
ENDROOT
Ignored bad PDB record found on line 5363
TORSDOF 0
Ignored bad PDB record found on line 5364
REMARK Name = protein.pdb
Ignored bad PDB record found on line 5365
REMARK 350 active torsions:
Ignored bad PDB record found on line 5366
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 5724
ENDROOT
Ignored bad PDB record found on line 5725
BRANCH 1 5
Duplicate atom serial number found: 5
Ignored bad PDB record found on line 5727
BRANCH 5 7
Duplicate atom serial number found: 6
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 5730
ENDBRANCH 5 7
Ignored bad PDB record found on line 5731
ENDBRANCH 1 5
Ignored bad PDB record found on line 5732
TORSDOF 2
Ignored bad PDB record found on line 5733
REMARK Name = protein.pdb
Ignored bad PDB record found on line 5734
REMARK 350 active torsions:
352 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 6092
ENDROOT
Ignored bad PDB record found on line 6093
BRANCH 1 4
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 6095
BRANCH 4 7
Duplicate atom serial number found: 5
Duplicate atom serial number found: 6
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 6099
ENDBRANCH 4 7
Ignored bad PDB record found on line 6100
BRANCH 4 8
Duplicate atom serial number found: 8
Duplicate atom serial number found: 9
Ignored bad PDB record found on line 6103
BRANCH 8 10
Duplicate atom serial number found: 10
Duplicate atom serial number found: 11
Ignored bad PDB record found on line 6106
ENDBRANCH 8 10
Ignored bad PDB record found on line 6107
ENDBRANCH 4 8
Ignored bad PDB record found on line 6108
ENDBRANCH 1 4
Ignored bad PDB record found on line 6109
BRANCH 3 12
Duplicate atom serial number found: 12
Ignored bad PDB record found on line 6111
BRANCH 12 13
Duplicate atom serial number found: 13
Duplicate atom serial number found: 14
Duplicate atom serial number found: 15
Ignored bad PDB record found on line 6115
BRANCH 15 16
Duplicate atom serial number found: 16
Ignored bad PDB record found on line 6117
BRANCH 16 17
Duplicate atom serial number found: 17
Duplicate atom serial number found: 18
Duplicate atom serial number found: 19
Duplicate atom serial number found: 20
Ignored bad PDB record found on line 6122
ENDBRANCH 16 17
Ignored bad PDB record found on line 6123
ENDBRANCH 15 16
Ignored bad PDB record found on line 6124
ENDBRANCH 12 13
Ignored bad PDB record found on line 6125
ENDBRANCH 3 12
Ignored bad PDB record found on line 6126
TORSDOF 8
354 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
Ignored bad PDB record found on line 6488
ENDROOT
Ignored bad PDB record found on line 6489
BRANCH 1 7
Duplicate atom serial number found: 6
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 6492
ENDBRANCH 1 7
Ignored bad PDB record found on line 6493
TORSDOF 1
Ignored bad PDB record found on line 6494
REMARK Name = protein.pdb
Ignored bad PDB record found on line 6495
REMARK 350 active torsions:
Ignored bad PDB record found on line 6496
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
2 messages similar to the above omitted
Ignored bad PDB record found on line 6857
ENDROOT
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TORSDOF 0
Ignored bad PDB record found on line 6859
REMARK Name = protein.pdb
Ignored bad PDB record found on line 6860
REMARK 350 active torsions:
Ignored bad PDB record found on line 6861
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Ignored bad PDB record found on line 7217
ENDROOT
Ignored bad PDB record found on line 7218
BRANCH 1 3
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 7221
ENDBRANCH 1 3
Ignored bad PDB record found on line 7222
TORSDOF 1
Ignored bad PDB record found on line 7223
REMARK Name = protein.pdb
Ignored bad PDB record found on line 7224
REMARK 350 active torsions:
Ignored bad PDB record found on line 7225
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 7582
ENDROOT
Ignored bad PDB record found on line 7583
BRANCH 3 4
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 7585
BRANCH 4 5
Duplicate atom serial number found: 5
Duplicate atom serial number found: 6
Duplicate atom serial number found: 7
Ignored bad PDB record found on line 7589
BRANCH 7 8
Duplicate atom serial number found: 8
Ignored bad PDB record found on line 7591
BRANCH 8 9
Duplicate atom serial number found: 9
Duplicate atom serial number found: 10
Duplicate atom serial number found: 11
Ignored bad PDB record found on line 7595
BRANCH 11 12
Duplicate atom serial number found: 12
Ignored bad PDB record found on line 7597
BRANCH 12 13
Duplicate atom serial number found: 13
Duplicate atom serial number found: 14
Duplicate atom serial number found: 15
Ignored bad PDB record found on line 7601
ENDBRANCH 12 13
Ignored bad PDB record found on line 7602
BRANCH 12 16
Duplicate atom serial number found: 16
Duplicate atom serial number found: 17
Duplicate atom serial number found: 18
Ignored bad PDB record found on line 7606
BRANCH 18 19
Duplicate atom serial number found: 19
Ignored bad PDB record found on line 7608
BRANCH 19 20
Duplicate atom serial number found: 20
Duplicate atom serial number found: 21
Duplicate atom serial number found: 22
Duplicate atom serial number found: 23
Duplicate atom serial number found: 24
2 messages similar to the above omitted
Ignored bad PDB record found on line 7616
BRANCH 23 27
Duplicate atom serial number found: 27
Duplicate atom serial number found: 28
Duplicate atom serial number found: 29
Ignored bad PDB record found on line 7620
BRANCH 29 30
Duplicate atom serial number found: 30
Ignored bad PDB record found on line 7622
BRANCH 30 31
Duplicate atom serial number found: 31
Duplicate atom serial number found: 32
Duplicate atom serial number found: 33
Duplicate atom serial number found: 34
Duplicate atom serial number found: 35
2 messages similar to the above omitted
Ignored bad PDB record found on line 7630
BRANCH 34 38
Duplicate atom serial number found: 38
Duplicate atom serial number found: 39
Duplicate atom serial number found: 40
Ignored bad PDB record found on line 7634
BRANCH 40 41
Duplicate atom serial number found: 41
Ignored bad PDB record found on line 7636
BRANCH 41 42
Duplicate atom serial number found: 42
Duplicate atom serial number found: 43
Duplicate atom serial number found: 44
Ignored bad PDB record found on line 7640
BRANCH 44 45
Duplicate atom serial number found: 45
Ignored bad PDB record found on line 7642
BRANCH 45 46
Duplicate atom serial number found: 46
Duplicate atom serial number found: 47
Duplicate atom serial number found: 48
Ignored bad PDB record found on line 7646
BRANCH 48 49
Duplicate atom serial number found: 49
Ignored bad PDB record found on line 7648
BRANCH 49 50
Duplicate atom serial number found: 50
Duplicate atom serial number found: 51
Duplicate atom serial number found: 52
Ignored bad PDB record found on line 7652
BRANCH 52 53
Duplicate atom serial number found: 53
Ignored bad PDB record found on line 7654
BRANCH 53 54
Duplicate atom serial number found: 54
Duplicate atom serial number found: 55
Duplicate atom serial number found: 56
Ignored bad PDB record found on line 7658
BRANCH 56 57
Duplicate atom serial number found: 57
Ignored bad PDB record found on line 7660
BRANCH 57 58
Duplicate atom serial number found: 58
Duplicate atom serial number found: 59
Duplicate atom serial number found: 60
Ignored bad PDB record found on line 7664
BRANCH 60 61
Duplicate atom serial number found: 61
Ignored bad PDB record found on line 7666
BRANCH 61 62
Duplicate atom serial number found: 62
Duplicate atom serial number found: 63
Duplicate atom serial number found: 64
Ignored bad PDB record found on line 7670
BRANCH 64 65
Duplicate atom serial number found: 65
Ignored bad PDB record found on line 7672
BRANCH 65 66
Duplicate atom serial number found: 66
Duplicate atom serial number found: 67
Duplicate atom serial number found: 68
Ignored bad PDB record found on line 7676
BRANCH 68 69
Duplicate atom serial number found: 69
Ignored bad PDB record found on line 7678
BRANCH 69 70
Duplicate atom serial number found: 70
Duplicate atom serial number found: 71
Duplicate atom serial number found: 72
Ignored bad PDB record found on line 7682
BRANCH 72 73
Duplicate atom serial number found: 73
Ignored bad PDB record found on line 7684
BRANCH 73 74
Duplicate atom serial number found: 74
Duplicate atom serial number found: 75
Duplicate atom serial number found: 76
Ignored bad PDB record found on line 7688
BRANCH 76 77
Duplicate atom serial number found: 77
Ignored bad PDB record found on line 7690
BRANCH 77 78
Duplicate atom serial number found: 78
Duplicate atom serial number found: 79
Duplicate atom serial number found: 80
Ignored bad PDB record found on line 7694
ENDBRANCH 77 78
Ignored bad PDB record found on line 7695
BRANCH 77 81
Duplicate atom serial number found: 81
Duplicate atom serial number found: 82
Duplicate atom serial number found: 83
Ignored bad PDB record found on line 7699
BRANCH 83 84
Duplicate atom serial number found: 84
Ignored bad PDB record found on line 7701
BRANCH 84 85
Duplicate atom serial number found: 85
Duplicate atom serial number found: 86
Duplicate atom serial number found: 87
Ignored bad PDB record found on line 7705
BRANCH 87 88
Duplicate atom serial number found: 88
Ignored bad PDB record found on line 7707
BRANCH 88 89
Duplicate atom serial number found: 89
Duplicate atom serial number found: 90
Duplicate atom serial number found: 91
Ignored bad PDB record found on line 7711
BRANCH 91 92
Duplicate atom serial number found: 92
Ignored bad PDB record found on line 7713
BRANCH 92 93
Duplicate atom serial number found: 93
Duplicate atom serial number found: 94
Duplicate atom serial number found: 95
Ignored bad PDB record found on line 7717
BRANCH 95 96
Duplicate atom serial number found: 96
Duplicate atom serial number found: 97
Ignored bad PDB record found on line 7720
BRANCH 96 98
Duplicate atom serial number found: 98
Duplicate atom serial number found: 99
Duplicate atom serial number found: 100
Ignored bad PDB record found on line 7724
BRANCH 100 101
Duplicate atom serial number found: 101
Ignored bad PDB record found on line 7726
BRANCH 101 102
Duplicate atom serial number found: 102
Duplicate atom serial number found: 103
Duplicate atom serial number found: 104
Ignored bad PDB record found on line 7730
ENDBRANCH 101 102
Ignored bad PDB record found on line 7731
BRANCH 101 105
Duplicate atom serial number found: 105
Duplicate atom serial number found: 106
Duplicate atom serial number found: 107
Ignored bad PDB record found on line 7735
BRANCH 107 108
Duplicate atom serial number found: 108
Ignored bad PDB record found on line 7737
BRANCH 108 109
Duplicate atom serial number found: 109
Duplicate atom serial number found: 110
Duplicate atom serial number found: 111
Ignored bad PDB record found on line 7741
BRANCH 111 112
Duplicate atom serial number found: 112
Ignored bad PDB record found on line 7743
BRANCH 112 113
Duplicate atom serial number found: 113
Duplicate atom serial number found: 114
Duplicate atom serial number found: 115
Ignored bad PDB record found on line 7747
BRANCH 115 116
Duplicate atom serial number found: 116
Ignored bad PDB record found on line 7749
BRANCH 116 117
Duplicate atom serial number found: 117
Duplicate atom serial number found: 118
Duplicate atom serial number found: 119
Ignored bad PDB record found on line 7753
ENDBRANCH 116 117
Ignored bad PDB record found on line 7754
BRANCH 116 120
Duplicate atom serial number found: 120
Ignored bad PDB record found on line 7756
BRANCH 120 121
Duplicate atom serial number found: 121
Duplicate atom serial number found: 122
Duplicate atom serial number found: 123
Duplicate atom serial number found: 124
Duplicate atom serial number found: 125
1 messages similar to the above omitted
Ignored bad PDB record found on line 7763
ENDBRANCH 120 121
Ignored bad PDB record found on line 7764
ENDBRANCH 116 120
Ignored bad PDB record found on line 7765
ENDBRANCH 115 116
Ignored bad PDB record found on line 7766
ENDBRANCH 112 113
Ignored bad PDB record found on line 7767
BRANCH 112 127
Duplicate atom serial number found: 127
Ignored bad PDB record found on line 7769
BRANCH 127 128
Duplicate atom serial number found: 128
Duplicate atom serial number found: 129
Duplicate atom serial number found: 130
Ignored bad PDB record found on line 7773
ENDBRANCH 127 128
Ignored bad PDB record found on line 7774
ENDBRANCH 112 127
Ignored bad PDB record found on line 7775
ENDBRANCH 111 112
Ignored bad PDB record found on line 7776
ENDBRANCH 108 109
Ignored bad PDB record found on line 7777
BRANCH 108 132
Duplicate atom serial number found: 131
Duplicate atom serial number found: 132
Ignored bad PDB record found on line 7780
BRANCH 132 133
Duplicate atom serial number found: 133
Duplicate atom serial number found: 134
Duplicate atom serial number found: 135
Duplicate atom serial number found: 136
Ignored bad PDB record found on line 7785
BRANCH 133 137
Duplicate atom serial number found: 137
Duplicate atom serial number found: 138
Ignored bad PDB record found on line 7788
ENDBRANCH 133 137
Ignored bad PDB record found on line 7789
ENDBRANCH 132 133
Ignored bad PDB record found on line 7790
ENDBRANCH 108 132
Ignored bad PDB record found on line 7791
ENDBRANCH 107 108
Ignored bad PDB record found on line 7792
ENDBRANCH 101 105
7 messages similar to the above omitted
Duplicate atom serial number found: 139
Duplicate atom serial number found: 140
Ignored bad PDB record found on line 7802
BRANCH 139 141
Duplicate atom serial number found: 141
Duplicate atom serial number found: 142
Ignored bad PDB record found on line 7805
ENDBRANCH 139 141
Ignored bad PDB record found on line 7806
ENDBRANCH 88 139
Ignored bad PDB record found on line 7807
ENDBRANCH 87 88
Ignored bad PDB record found on line 7808
ENDBRANCH 84 85
Ignored bad PDB record found on line 7809
BRANCH 84 143
Duplicate atom serial number found: 143
Ignored bad PDB record found on line 7811
BRANCH 143 144
Duplicate atom serial number found: 144
Ignored bad PDB record found on line 7813
BRANCH 144 145
Duplicate atom serial number found: 145
Duplicate atom serial number found: 146
Duplicate atom serial number found: 147
Ignored bad PDB record found on line 7817
ENDBRANCH 144 145
Ignored bad PDB record found on line 7818
ENDBRANCH 143 144
Ignored bad PDB record found on line 7819
ENDBRANCH 84 143
Ignored bad PDB record found on line 7820
ENDBRANCH 83 84
Ignored bad PDB record found on line 7821
ENDBRANCH 77 81
3 messages similar to the above omitted
Duplicate atom serial number found: 148
Ignored bad PDB record found on line 7826
BRANCH 148 149
Duplicate atom serial number found: 149
Duplicate atom serial number found: 150
Duplicate atom serial number found: 151
Ignored bad PDB record found on line 7830
ENDBRANCH 148 149
Ignored bad PDB record found on line 7831
ENDBRANCH 73 148
Ignored bad PDB record found on line 7832
ENDBRANCH 72 73
Ignored bad PDB record found on line 7833
ENDBRANCH 69 70
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BRANCH 69 152
Duplicate atom serial number found: 152
Ignored bad PDB record found on line 7836
BRANCH 152 153
Ignored bad PDB record found on line 7840
ENDBRANCH 152 153
Ignored bad PDB record found on line 7841
ENDBRANCH 69 152
Ignored bad PDB record found on line 7842
ENDBRANCH 68 69
Ignored bad PDB record found on line 7843
ENDBRANCH 65 66
584 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
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ENDROOT
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BRANCH 3 4
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
Ignored bad PDB record found on line 8647
ENDBRANCH 3 4
Ignored bad PDB record found on line 8648
TORSDOF 1
Ignored bad PDB record found on line 8649
REMARK Name = protein.pdb
Ignored bad PDB record found on line 8650
REMARK 350 active torsions:
Ignored bad PDB record found on line 8651
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 9006
ENDROOT
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TORSDOF 0
Ignored bad PDB record found on line 9008
REMARK Name = protein.pdb
Ignored bad PDB record found on line 9009
REMARK 350 active torsions:
Ignored bad PDB record found on line 9010
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 9367
ENDROOT
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TORSDOF 0
Ignored bad PDB record found on line 9369
REMARK Name = protein.pdb
Ignored bad PDB record found on line 9370
REMARK 350 active torsions:
Ignored bad PDB record found on line 9371
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 9726
ENDROOT
Ignored bad PDB record found on line 9727
BRANCH 1 3
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 9730
ENDBRANCH 1 3
Ignored bad PDB record found on line 9731
BRANCH 1 4
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
Ignored bad PDB record found on line 9734
ENDBRANCH 1 4
Ignored bad PDB record found on line 9735
TORSDOF 2
Ignored bad PDB record found on line 9736
REMARK Name = protein.pdb
Ignored bad PDB record found on line 9737
REMARK 350 active torsions:
Ignored bad PDB record found on line 9738
REMARK status: ('A' for Active; 'I' for Inactive)
351 messages similar to the above omitted
Duplicate atom serial number found: 1
Ignored bad PDB record found on line 10093
ENDROOT
Ignored bad PDB record found on line 10094
BRANCH 1 2
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Ignored bad PDB record found on line 10097
ENDBRANCH 1 2
Ignored bad PDB record found on line 10098
BRANCH 1 4
Duplicate atom serial number found: 4
Ignored bad PDB record found on line 10100
BRANCH 4 5
Duplicate atom serial number found: 5
Duplicate atom serial number found: 6
Ignored bad PDB record found on line 10103
ENDBRANCH 4 5
Ignored bad PDB record found on line 10104
ENDBRANCH 1 4
Ignored bad PDB record found on line 10105
TORSDOF 3
Ignored bad PDB record found on line 10106
REMARK Name = protein.pdb
Ignored bad PDB record found on line 10107
REMARK 350 active torsions:
352 messages similar to the above omitted
Duplicate atom serial number found: 1
Duplicate atom serial number found: 2
Duplicate atom serial number found: 3
Duplicate atom serial number found: 4
Duplicate atom serial number found: 5
3 messages similar to the above omitted
Ignored bad PDB record found on line 10470
ENDROOT
Ignored bad PDB record found on line 10471
TORSDOF 0
Chain information for protein.pdb #2
---
Chain | Description
A | No description available
Opened protein.pdbqt containing 1 structures (821 atoms, 692 bonds)
Computing secondary structure
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M4
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.10.2, Qt 6.10.0
Qt runtime version: 6.10.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac16,12
Model Number: MW0Y3TU/A
Chip: Apple M4
Total Number of Cores: 10 (4 Performance and 6 Efficiency)
Memory: 16 GB
System Firmware Version: 13822.81.10
OS Loader Version: 13822.81.10
Software:
System Software Overview:
System Version: macOS 26.3 (25D125)
Kernel Version: Darwin 25.3.0
Time since boot: 95 gün 6 saat 7 dakika
Graphics/Displays:
Apple M4:
Chipset Model: Apple M4
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
accessible-pygments: 0.0.5
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
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anyio: 4.13.0
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beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 4.3.1
bs4: 0.0.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.7
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.2
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.67.1
ChimeraX-AtomicLibrary: 14.4
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.4
ChimeraX-Cluster: 1.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.12rc202605192128
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.2.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.8.2
ChimeraX-Label: 1.5
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ChimeraX-ListInfo: 1.3.1
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.3
ChimeraX-Map: 1.3
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ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
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ChimeraX-MatchMaker: 2.4
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.2.0
ChimeraX-MDcrds: 2.19
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ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.8
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.23
ChimeraX-ModelPanel: 1.6.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.4
ChimeraX-OpenFold: 1.0
ChimeraX-OrthoPick: 1.0.1
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ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.6
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.8.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
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ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
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ChimeraX-SDF: 2.0.3
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ChimeraX-SmoothLines: 1.0
ChimeraX-SNFG: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.4
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.50.7
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.6.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.4.0
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.14.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.2.4
debugpy: 1.8.20
decorator: 5.3.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.63.0
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.16.0
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.15
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 2.0.0
iniconfig: 2.3.0
ipykernel: 7.1.0
ipython: 9.9.0
ipython_pygments_lexers: 1.1.1
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.8.0
jupyter_core: 5.9.1
kiwisolver: 1.5.0
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.2
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.1
narwhals: 2.21.2
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.4.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.7
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.9.6
plotly: 6.7.0
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.5.2
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.13.4
pydantic-settings: 2.14.1
pydantic_core: 2.46.4
pydata-sphinx-theme: 0.17.1
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.5.1
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.10.2
PyQt6-Qt6: 6.10.1
PyQt6-WebEngine-commercial: 6.10.0
PyQt6-WebEngine-Qt6: 6.10.1
PyQt6_sip: 13.10.3
pytest: 9.0.3
pytest-cov: 7.1.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.2
python-multipart: 0.0.29
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 9.0.4
sphinx-autodoc-typehints: 3.6.1
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.4.4
stack-data: 0.6.3
starlette: 1.0.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 3.2.1
threadpoolctl: 3.6.0
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.5
tqdm: 4.67.3
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
Unidecode: 1.4.0
urllib3: 2.7.0
uvicorn: 0.47.0
wcwidth: 0.7.0
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
yarl: 1.24.2
Change History (2)
comment:1 by , 14 hours ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in QObject::event in Qt 6.10.1 |
comment:2 by , 14 hours ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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