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Opened 3 hours ago
Closed 3 hours ago
#20376 closed defect (duplicate)
Crash in QObject::event
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | chimera-programmers | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.3-arm64-arm-64bit
ChimeraX Version: 1.12rc202605201705 (2026-05-20 17:05:57 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000000296043000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 327 in wait
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 629 in wait
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 765 in wait
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 768 in get
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py", line 1679 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/tasks.py", line 323 in _run_function
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000295037000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000029402b000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000029301f000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 948 in wait
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000292013000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000291007000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000028727f000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000286273000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000285267000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000028425b000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000028324f000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000282243000 (most recent call first):
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", line 1382 in do_handshake
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", line 1104 in _create
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py", line 517 in wrap_socket
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/util/ssl_.py", line 477 in _ssl_wrap_socket_impl
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/util/ssl_.py", line 433 in ssl_wrap_socket
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/connection.py", line 975 in _ssl_wrap_socket_and_match_hostname
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/connection.py", line 796 in connect
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/connectionpool.py", line 1106 in _validate_conn
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/connectionpool.py", line 464 in _make_request
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/connectionpool.py", line 788 in urlopen
File "/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/poolmanager.py", line 457 in urlopen
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Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util (total: 39)
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Activity Tracing 256K 1
CG backing stores 2176K 4
CG image 5152K 7
CG raster data 3280K 4
ColorSync 592K 26
CoreAnimation 144K 9
CoreGraphics 32K 2
CoreUI image data 2240K 13
Foundation 16K 1
Kernel Alloc Once 1424K 4
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MALLOC guard page 192K 10
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Stack 390.0M 45
Stack Guard 56.0M 1
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VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated)
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__TEXT 884.8M 753
dyld private memory 320K 4
mapped file 217.4M 44
shared memory 1200K 22
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.12rc202605201705 (2026-05-20)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.12rc202605201705 (2026-05-20)
© 2016-2026 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.11.9
Locale: UTF-8
Qt version: PyQt6 6.10.2, Qt 6.10.0
Qt runtime version: 6.10.1
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir10,1
Model Number: MGN63LL/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 8422.100.650
OS Loader Version: 8422.100.650
Software:
System Software Overview:
System Version: macOS 13.3 (22E252)
Kernel Version: Darwin 22.4.0
Time since boot: 59 days, 12 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 7
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
accessible-pygments: 0.0.5
aiohappyeyeballs: 2.6.2
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.13.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 26.1.0
babel: 2.18.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 4.3.1
bs4: 0.0.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.7
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.2
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.67.1
ChimeraX-AtomicLibrary: 14.4
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.4
ChimeraX-Cluster: 1.0
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.12rc202605201705
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.2.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.8.2
ChimeraX-Label: 1.5
ChimeraX-LightingGUI: 1.0
ChimeraX-ListInfo: 1.3.1
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.3
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchAlign: 1.1
ChimeraX-MatchMaker: 2.4
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.2.0
ChimeraX-MDcrds: 2.19
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.8
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.23
ChimeraX-ModelPanel: 1.6.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.4
ChimeraX-OpenFold: 1.0
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.13
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.6
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.8.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.12
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.18
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SNFG: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.4
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.50.7
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.6.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.4.0
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.14.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.2.4
debugpy: 1.8.20
decorator: 5.3.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.63.0
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.16.0
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.15
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 2.0.0
iniconfig: 2.3.0
ipykernel: 7.1.0
ipython: 9.9.0
ipython_pygments_lexers: 1.1.1
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.8.0
jupyter_core: 5.9.1
kiwisolver: 1.5.0
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.2
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.1
narwhals: 2.21.2
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.4.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.7
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.9.6
plotly: 6.7.0
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.5.2
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.13.4
pydantic-settings: 2.14.1
pydantic_core: 2.46.4
pydata-sphinx-theme: 0.18.0
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.5.1
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.10.2
PyQt6-Qt6: 6.10.1
PyQt6-WebEngine-commercial: 6.10.0
PyQt6-WebEngine-Qt6: 6.10.1
PyQt6_sip: 13.10.3
pytest: 9.0.3
pytest-cov: 7.1.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.2
python-multipart: 0.0.29
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 9.0.4
sphinx-autodoc-typehints: 3.6.1
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.4.4
stack-data: 0.6.3
starlette: 1.0.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 3.2.1
threadpoolctl: 3.6.0
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.5
tqdm: 4.67.3
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
Unidecode: 1.4.0
urllib3: 2.7.0
uvicorn: 0.47.0
wcwidth: 0.7.0
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
yarl: 1.24.2
Change History (2)
comment:1 by , 3 hours ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in QObject::event |
comment:2 by , 3 hours ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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We seem to still be at 6.10.1 in both the daily build and release candidate -- filing a ticket shortly...