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Opened 11 hours ago
Closed 9 hours ago
#20320 closed defect (duplicate)
Crash in swap_buffers exposing status line during Mac wakeup, macOS 26
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.3.1-arm64-arm-64bit
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Thread 0x000000030805b000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 579 in _handle_results
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000030704f000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 531 in _handle_tasks
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000306043000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py", line 415 in select
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py", line 948 in wait
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 502 in _wait_for_updates
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 522 in _handle_workers
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000305037000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000030402b000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000030301f000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000302013000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x0000000301007000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017f2b3000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017e2a7000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017d29b000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017c28f000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x000000017b283000 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py", line 114 in worker
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 982 in run
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1045 in _bootstrap_inner
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1002 in _bootstrap
Current thread 0x00000001fb28b100 (most recent call first):
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 561 in swap_buffers
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 166 in status
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 98 in _expose_event
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, PIL._imaging, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, PIL._imagingmath, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio (total: 48)
{"app_name":"ChimeraX","timestamp":"2026-05-12 17:59:52.00 -0500","app_version":"1.11.1","slice_uuid":"c20e09a8-923e-3fb3-856b-3e765bcb267b","build_version":"1.11.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 26.3.1 (25D771280a)","roots_installed":0,"name":"ChimeraX","incident_id":"3FBD1BAD-52A5-41E0-9AA3-6E4362ED46C5"}
{
"uptime" : 150000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro18,3",
"coalitionID" : 17411,
"osVersion" : {
"train" : "macOS 26.3.1",
"build" : "25D771280a",
"releaseType" : "User"
},
"captureTime" : "2026-05-12 17:59:39.1149 -0500",
"codeSigningMonitor" : 1,
"incident" : "3FBD1BAD-52A5-41E0-9AA3-6E4362ED46C5",
"pid" : 30726,
"translated" : false,
"cpuType" : "ARM-64",
"procLaunch" : "2026-05-11 18:06:35.5653 -0500",
"procStartAbsTime" : 2928995946265,
"procExitAbsTime" : 3639817536893,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.11.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.11.1","CFBundleVersion":"1.11.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"B0E2E585-E9B1-5DD2-8E12-09A34728017F","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "7F2D6966-97F1-E0CF-3F37-29BB4BA0CA35",
"appleIntelligenceStatus" : {"state":"available"},
"developerMode" : 1,
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"codeSigningAuxiliaryInfo" : 0,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRFOD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkQng\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"bootSessionUUID" : "88F8AFB2-AEBC-4DB3-ACF1-5B3B44F8E643",
"wakeTime" : 25858,
"sleepWakeUUID" : "4D950AD0-0B0E-4399-941E-CAAE87FF9B5F",
"sip" : "enabled",
"vmRegionInfo" : "0xc00001d00 is in 0x96e000000-0xc6b000000; bytes after start: 11039415552 bytes before end: 1795154687
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
MALLOC_SMALL 409400000-409800000 [ 4096K] rw-\/rwx SM=PRV
GAP OF 0x564800000 BYTES
---> commpage (reserved) 96e000000-c6b000000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL c6b000000-c6b400000 [ 4096K] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000002, 0x0000000c00001d00","rawCodes":[2,51539614976],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x0000000c00001d00"},
"termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":30726},
"vmregioninfo" : "0xc00001d00 is in 0x96e000000-0xc6b000000; bytes after start: 11039415552 bytes before end: 1795154687
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
MALLOC_SMALL 409400000-409800000 [ 4096K] rw-\/rwx SM=PRV
GAP OF 0x564800000 BYTES
---> commpage (reserved) 96e000000-c6b000000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL c6b000000-c6b400000 [ 4096K] rw-\/rwx SM=PRV ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{
"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":6155507640},{"value":99},{"value":122},{"value":0},{"value":0},{"value":11797480549325225396},{"value":11797480542431382708},{"value":14757395258967641293},{"value":4294967286},{"value":6155507570},{"value":0},{"value":52},{"value":4294967280},{"value":328},{"value":8531529664},{"value":0},{"value":10},{"value":259},{"value":8508715488 ,"symbolLocation":224,"symbol": "_main_thread"},{"value":60},{"value":1},{"value":4332291640 ,"symbolLocation":0,"symbol": "faulthandler_handlers"},{"value":1},{"value":4312532880},{"value":4328979256 ,"symbolLocation":0,"symbol": "cfunction_call"},{"value":4403848792}],"flavor":"ARM_THREAD_STATE64","lr":{"value":6693877896},"cpsr":{"value":1073745920},"fp":{"value":6155507712},"sp":{"value":6155507680},"esr":{"value":1442840704,"description":"(Syscall)"},"pc":{"value":6693639600,"matchesCrashFrame":1},"far":{"value":0}},"id":2132026,"triggered":true,"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[
{"imageOffset":38320,"symbol": "__pthread_kill" ,"symbolLocation":8,"imageIndex":129},
{"imageOffset":26760,"symbol": "pthread_kill" ,"symbolLocation":296,"imageIndex":130},
{"imageOffset":269616,"symbol": "raise" ,"symbolLocation":32,"imageIndex":131},
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{"imageOffset":14180,"symbol": "_sigtramp" ,"symbolLocation":56,"imageIndex":132},
{"imageOffset":16143540,"symbol": "-[NSSoftwareSurface frontBuffer]" ,"symbolLocation":576,"imageIndex":133},
{"imageOffset":16138044,"symbol": "-[NSCGLSurface flushRect:]" ,"symbolLocation":512,"imageIndex":133},
{"imageOffset":16137356,"symbol": "NSCGLSurfaceFlush" ,"symbolLocation":132,"imageIndex":133},
{"imageOffset":106048,"symbol": "glSwap_Exec" ,"symbolLocation":256,"imageIndex":134},
{"imageOffset":55032,"symbol": "CGLFlushDrawable" ,"symbolLocation":64,"imageIndex":135},
{"imageOffset":1393212,"symbol": "-[NSOpenGLContext flushBuffer]" ,"symbolLocation":28,"imageIndex":133},
{"imageOffset":512676,"imageIndex":72},
{"imageOffset":3679112,"symbol": "QOpenGLContext::swapBuffers(QSurface*)" ,"symbolLocation":236,"imageIndex":51},
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{"imageOffset":55148,"symbol": "QApplicationPrivate::notify_helper(QObject*, QEvent*)" ,"symbolLocation":332,"imageIndex":50},
{"imageOffset":59204,"symbol": "QApplication::notify(QObject*, QEvent*)" ,"symbolLocation":516,"imageIndex":50},
{"imageOffset":1420288,"symbol": "sipQApplication::notify(QObject*, QEvent*)" ,"symbolLocation":248,"imageIndex":49},
{"imageOffset":621068,"symbol": "QCoreApplication::sendSpontaneousEvent(QObject*, QEvent*)" ,"symbolLocation":176,"imageIndex":46},
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{"imageOffset":982560,"symbol": "bool QWindowSystemInterface::handleExposeEvent(QWindow*, QRegion const&)" ,"symbolLocation":76,"imageIndex":51},
{"imageOffset":280300,"imageIndex":72},
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{"imageOffset":110872,"symbol": "CA::Layer::display_if_needed(CA::Transaction*)" ,"symbolLocation":784,"imageIndex":136},
{"imageOffset":1825556,"symbol": "CA::Context::commit_transaction(CA::Transaction*, double, double*)" ,"symbolLocation":592,"imageIndex":136},
{"imageOffset":9308,"symbol": "CA::Transaction::commit()" ,"symbolLocation":644,"imageIndex":136},
{"imageOffset":8442884,"symbol": "__47+[NSCGSSpace addTileResizeNotificationHandler:]_block_invoke" ,"symbolLocation":284,"imageIndex":133},
{"imageOffset":353408,"symbol": "__CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__" ,"symbolLocation":128,"imageIndex":137},
{"imageOffset":765780,"symbol": "___CFXRegistrationPost_block_invoke" ,"symbolLocation":92,"imageIndex":137},
{"imageOffset":765592,"symbol": "_CFXRegistrationPost" ,"symbolLocation":436,"imageIndex":137},
{"imageOffset":216980,"symbol": "_CFXNotificationPost" ,"symbolLocation":740,"imageIndex":137},
{"imageOffset":10536656,"symbol": "-[NSNotificationCenter postNotificationName:object:userInfo:]" ,"symbolLocation":88,"imageIndex":138},
{"imageOffset":3470700,"symbol": "post_coordinated_distributed_notification(CGSNotificationType, void*, unsigned int, void*)" ,"symbolLocation":784,"imageIndex":139},
{"imageOffset":2360516,"symbol": "(anonymous namespace)::Callout::operator()(CGSNotificationType, void*, unsigned long) const" ,"symbolLocation":100,"imageIndex":139},
{"imageOffset":43368,"symbol": "CGSPostLocalNotification" ,"symbolLocation":184,"imageIndex":139},
{"imageOffset":42308,"symbol": "(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)" ,"symbolLocation":116,"imageIndex":139},
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===== Log before crash start =====
Startup Messages
---
note | available bundle cache has not been initialized yet
You can double click a model's Name or ID in the model panel to edit those
fields
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/nitrogenousbase/Desktop/cgas-
> patches/32x32x32/roi1_patch_32x32x32.mrc
Opened roi1_patch_32x32x32.mrc as #1, grid size 32,32,32, pixel 8, shown at
level 4.48, step 1, values float32
> volume #1 level 3.608
> volume #1 level 1.426
> volume #1 step 2
> volume #1 step 1
> volume #1 level 1.956
> volume #1 level 2.425
> open /Users/nitrogenousbase/Desktop/cgas-
> patches/48x48x48/roi1_patch_48x48x48.mrc
Opened roi1_patch_48x48x48.mrc as #2, grid size 48,48,48, pixel 8, shown at
level 4.56, step 1, values float32
> open /Users/nitrogenousbase/Desktop/cgas-
> patches/64x64x64/roi1_patch_64x64x64.mrc
Opened roi1_patch_64x64x64.mrc as #3, grid size 64,64,64, pixel 8, shown at
level 4.48, step 1, values float32
> hide #!1 models
> hide #!2 models
> show #!2 models
> volume #2 level 2.848
> volume #3 level 3.292
> volume #3 level 3
> volume #1 level 3.139
> volume #2 level -3.876
> volume #3 level 3.225
> volume #2 level 2.826
> hide #!3 models
> hide #!2 models
> volume #1 level 3.118
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #1 level 2.467
> open /Users/nitrogenousbase/Desktop/cgas-
> patches/48x48x48/roi2_patch_48x48x48.mrc
Opened roi2_patch_48x48x48.mrc as #4, grid size 48,48,48, pixel 8, shown at
level 4.34, step 1, values float32
> hide #!1 models
> hide #!2 models
> volume #4 level 3.982
> volume #4 level 3.139
> volume #4 level 2.078
> volume #4 level 2.681
> volume #4 level 2.271
> volume #4 level 2.391
> open /Users/nitrogenousbase/Downloads/6LRJ.cif
Summary of feedback from opening /Users/nitrogenousbase/Downloads/6LRJ.cif
---
notes | Fetching CCD EQX from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/X/EQX/EQX.cif
Fetching CCD ZN from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/ZN/ZN.cif
6LRJ.cif title:
Human cGAS catalytic domain bound with compound 23 [more info...]
Chain information for 6LRJ.cif #5
---
Chain | Description | UniProt
A B | Cyclic GMP-AMP synthase | CGAS_HUMAN 157-522
Non-standard residues in 6LRJ.cif #5
---
EQX —
4-[2-(2-methyl-[1,2,4]triazolo[1,5-c]quinazolin-5-yl)hydrazinyl]-4-oxidanylidene-
butanoic acid
ZN — zinc ion
5260 atoms have anisotropic B-factors. Depict anisotropic information with
Thermal Ellipsoids [start tool...] or the aniso command.
> hide #!4 models
> hide #!5 models
> show #!5 models
> show #!5 target m
> view #5 clip false
> show #!4 models
> show #!4 target m
> view #4 clip false
> select add #5
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 4 models selected
> hide #!4 models
> show #!4 models
> select subtract #5
Nothing selected
> view #5 clip false
> ui mousemode right "translate selected models"
> fitmap #5 inMap #3
Fit molecule 6LRJ.cif (#5) to map roi1_patch_64x64x64.mrc (#3) using 5260
atoms
average map value = 0, steps = 24
shifted from previous position = 0
rotated from previous position = 0 degrees
atoms outside contour = 5260, contour level = 3.2249
Position of 6LRJ.cif (#5) relative to roi1_patch_64x64x64.mrc (#3)
coordinates:
Matrix rotation and translation
1.00000000 0.00000000 0.00000000 0.00000000
0.00000000 1.00000000 0.00000000 0.00000000
0.00000000 0.00000000 1.00000000 0.00000000
Axis 0.00000000 0.00000000 1.00000000
Axis point 0.00000000 0.00000000 0.00000000
Rotation angle (degrees) 0.00000000
Shift along axis 0.00000000
> hide #!4 models
> show #!4 models
> view #4 clip false
> select add #5
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 4 models selected
> move #5 center #4
Missing or invalid "axis" argument: Axis argument requires 2 atoms, got 5260
atoms
> move cofr models #5 toCenter #4
Missing or invalid "models" argument: invalid models specifier
> align #5 toAtoms #4
Unequal number of atoms to pair, 5260 and 0
> show #4
> show #5
> view all
> view matrix models #5,1,0,0,1084.3,0,1,0,2037.1,0,0,1,3614.1
> view matrix models #5,1,0,0,3711.8,0,1,0,6100.3,0,0,1,1225
> view matrix models #5,1,0,0,5634.4,0,1,0,5024.7,0,0,1,1204.3
> view matrix models #5,1,0,0,5619.4,0,1,0,5034.4,0,0,1,1196.1
> ui mousemode right zoom
> ui mousemode right rotate
> ui mousemode right translate
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.80382,0.58124,-0.12663,5632.8,-0.56285,0.81202,0.15438,5040.7,0.19256,-0.052823,0.97986,1191.9
> select add #4
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 6 models selected
> ui mousemode right rotate
> select subtract #4
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 4 models selected
> select subtract #5
Nothing selected
> ui mousemode right "rotate selected models"
> view #4 clip false
> select add #5
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 4 models selected
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5634.2,0.44019,0.66709,0.60102,5006.2,0.27105,-0.73686,0.61934,1192.4
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5907,0.44019,0.66709,0.60102,5001.8,0.27105,-0.73686,0.61934,1323.7
> view matrix models
> #5,0.85602,-0.10972,-0.50517,6145.1,0.44019,0.66709,0.60102,5267.6,0.27105,-0.73686,0.61934,1361.8
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5896,0.44019,0.66709,0.60102,5554.9,0.27105,-0.73686,0.61934,1343
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5824.7,0.44019,0.66709,0.60102,5542.5,0.27105,-0.73686,0.61934,1413.3
> show #!1 models
> hide #!4 models
> show #!4 target m
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5691.5,0.44019,0.66709,0.60102,5482.6,0.27105,-0.73686,0.61934,1260.6
> hide #!4 models
> select add #1
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 6 models selected
> hide #!1 models
> show #!1 models
> show #!1 target m
> view #1 clip false
> show #!4 models
> undo
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!1 target m
> view #1 clip false
> view matrix models
> #1,1,0,0,2.2626,0,1,0,-9.4427,0,0,1,4.3031,#5,0.85602,-0.10972,-0.50517,5693.8,0.44019,0.66709,0.60102,5473.1,0.27105,-0.73686,0.61934,1264.9
> select subtract #1
5260 atoms, 5359 bonds, 22 pseudobonds, 666 residues, 4 models selected
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5693.8,0.44019,0.66709,0.60102,5473,0.27105,-0.73686,0.61934,1265
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5760.8,0.44019,0.66709,0.60102,5135,0.27105,-0.73686,0.61934,1516.3
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5701.6,0.44019,0.66709,0.60102,4835.4,0.27105,-0.73686,0.61934,1551.9
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5526,0.44019,0.66709,0.60102,4557.3,0.27105,-0.73686,0.61934,1541.9
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5235.9,0.44019,0.66709,0.60102,4389.2,0.27105,-0.73686,0.61934,1468.5
> view matrix models
> #5,0.85602,-0.10972,-0.50517,5034.4,0.44019,0.66709,0.60102,4376.8,0.27105,-0.73686,0.61934,1431.8
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4852,0.44019,0.66709,0.60102,4435,0.27105,-0.73686,0.61934,1458.8
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4740.3,0.44019,0.66709,0.60102,4630.6,0.27105,-0.73686,0.61934,1473.6
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4741.3,0.44019,0.66709,0.60102,4630.4,0.27105,-0.73686,0.61934,1475.6
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4717.2,0.44019,0.66709,0.60102,4641.5,0.27105,-0.73686,0.61934,1442
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4697.1,0.44019,0.66709,0.60102,4664.7,0.27105,-0.73686,0.61934,1382.5
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4979.7,0.44019,0.66709,0.60102,4760.1,0.27105,-0.73686,0.61934,1379.7
> view matrix models
> #5,0.85602,-0.10972,-0.50517,4970.5,0.44019,0.66709,0.60102,4766,0.27105,-0.73686,0.61934,1372.4
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.1653,-0.92974,-0.32904,4979.5,-0.65724,0.3526,-0.66612,4818.7,0.73533,0.10615,-0.66934,1404
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.1653,-0.92974,-0.32904,4967.1,-0.65724,0.3526,-0.66612,4833,0.73533,0.10615,-0.66934,1402.6
> view matrix models
> #5,-0.1653,-0.92974,-0.32904,4839.9,-0.65724,0.3526,-0.66612,4868,0.73533,0.10615,-0.66934,1449.7
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.41775,-0.76089,0.49652,4808.1,-0.6109,-0.63975,-0.4664,4851.7,0.67252,-0.10848,-0.73208,1450.4
> view matrix models
> #5,0.59389,-0.42991,0.68005,4803,-0.36932,-0.89662,-0.24429,4838.2,0.71477,-0.10608,-0.69127,1448.5
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.59389,-0.42991,0.68005,4790.6,-0.36932,-0.89662,-0.24429,4877.8,0.71477,-0.10608,-0.69127,1451.5
> view matrix models
> #5,0.59389,-0.42991,0.68005,4802.5,-0.36932,-0.89662,-0.24429,4898.4,0.71477,-0.10608,-0.69127,1452.5
> volume #1 level 4.042
> view matrix models
> #5,0.59389,-0.42991,0.68005,4882.2,-0.36932,-0.89662,-0.24429,4848.3,0.71477,-0.10608,-0.69127,1455.3
> view matrix models
> #5,0.59389,-0.42991,0.68005,4850.3,-0.36932,-0.89662,-0.24429,4867.4,0.71477,-0.10608,-0.69127,1445.7
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.57221,-0.69926,0.42849,4854.4,-0.28198,-0.65838,-0.69787,4879.5,0.7701,0.27851,-0.57391,1445.5
> view matrix models
> #5,0.62872,-0.090123,-0.77239,4890,0.10523,0.99399,-0.030323,4871.1,0.77048,-0.062213,0.63442,1411.1
> ui mousemode right "translate selected models"
> view matrix models
> #5,0.62872,-0.090123,-0.77239,4861.2,0.10523,0.99399,-0.030323,4896.1,0.77048,-0.062213,0.63442,1430.3
> volume #1 level 3.748
> view matrix models
> #5,0.62872,-0.090123,-0.77239,5035.6,0.10523,0.99399,-0.030323,4810.9,0.77048,-0.062213,0.63442,1328.2
> view matrix models
> #5,0.62872,-0.090123,-0.77239,5021.6,0.10523,0.99399,-0.030323,4800.9,0.77048,-0.062213,0.63442,1322
> view matrix models
> #5,0.62872,-0.090123,-0.77239,5029.4,0.10523,0.99399,-0.030323,4806.5,0.77048,-0.062213,0.63442,1308.5
> volume #1 level 2.866
> view matrix models
> #5,0.62872,-0.090123,-0.77239,5030.9,0.10523,0.99399,-0.030323,4808.1,0.77048,-0.062213,0.63442,1327.3
> view matrix models
> #5,0.62872,-0.090123,-0.77239,4998.5,0.10523,0.99399,-0.030323,4791.4,0.77048,-0.062213,0.63442,1397.4
> view matrix models
> #5,0.62872,-0.090123,-0.77239,4850.6,0.10523,0.99399,-0.030323,4914.6,0.77048,-0.062213,0.63442,1443.9
> ui mousemode right "rotate selected models"
> view matrix models
> #5,0.69089,-0.091611,-0.71713,4847.8,0.24182,0.96409,0.10982,4907.8,0.68131,-0.24929,0.68823,1442.5
> view matrix models
> #5,0.80169,-0.10417,-0.5886,4842,0.50003,0.65641,0.56489,4887.5,0.32752,-0.74718,0.57832,1447.8
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4840.6,0.23512,-0.95444,-0.18376,4895.7,0.678,0.025586,0.73461,1444.2
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4849.8,0.23512,-0.95444,-0.18376,4888.8,0.678,0.025586,0.73461,1440
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4842.5,0.23512,-0.95444,-0.18376,4876.7,0.678,0.025586,0.73461,1440.4
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4810.9,0.23512,-0.95444,-0.18376,4948,0.678,0.025586,0.73461,1399.4
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4866,0.23512,-0.95444,-0.18376,4914.6,0.678,0.025586,0.73461,1381.5
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4858.4,0.23512,-0.95444,-0.18376,4907.2,0.678,0.025586,0.73461,1402.1
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4836.5,0.23512,-0.95444,-0.18376,4889.9,0.678,0.025586,0.73461,1397.6
> view matrix models
> #5,-0.69644,-0.29731,0.65313,4834,0.23512,-0.95444,-0.18376,4893.7,0.678,0.025586,0.73461,1382.2
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.73872,-0.60587,-0.29531,4855.9,0.40145,-0.74745,0.5293,4874.1,-0.54141,0.27245,0.79539,1409.4
> view matrix models
> #5,-0.76139,-0.50981,-0.40048,4860.1,0.22962,-0.78976,0.56881,4876.3,-0.60627,0.34113,0.71838,1413.4
> view matrix models
> #5,-0.75861,-0.44689,-0.47413,4862.5,0.25194,-0.8723,0.41908,4878.8,-0.60087,0.19846,0.77432,1410.4
> view matrix models
> #5,-0.73986,-0.5703,-0.35687,4857.9,0.35424,-0.78121,0.51402,4875.1,-0.57194,0.25389,0.78002,1410.2
> view matrix models
> #5,-0.7136,-0.064842,-0.69754,4871.2,-0.13334,0.99008,0.044373,4915.7,0.68775,0.12467,-0.71517,1420
> volume #1 style mesh
> view matrix models
> #5,-0.684,-0.37304,-0.62689,4865.6,-0.40666,0.90843,-0.096876,4924.4,0.60562,0.18867,-0.77307,1423.9
> view matrix models
> #5,-0.72931,0.03445,-0.68332,4872.2,-0.052032,0.99305,0.1056,4912.5,0.68221,0.11257,-0.72244,1420.2
> view matrix models
> #5,0.19429,-0.72512,0.66064,4810.3,0.97481,0.21794,-0.047478,4886.4,-0.10955,0.65322,0.7492,1405.2
> view matrix models
> #5,-0.49484,-0.14142,0.8574,4826.1,-0.055129,-0.97957,-0.19339,4899.9,0.86723,-0.14297,0.47693,1383
> view matrix models
> #5,-0.47699,-0.12885,0.86941,4825.5,0.0079755,-0.98979,-0.14231,4897.2,0.87887,-0.060947,0.47315,1383.7
> view matrix models
> #5,-0.47494,-0.061501,0.87787,4825.9,0.091407,-0.99561,-0.020296,4892.2,0.87526,0.070603,0.47848,1384.9
> view matrix models
> #5,-0.67058,-0.38661,0.63313,4833,0.40645,-0.90544,-0.12241,4889,0.62059,0.17525,0.7643,1384.2
> view matrix models
> #5,-0.6673,-0.38497,0.63758,4832.9,0.40588,-0.90574,-0.12209,4889,0.62448,0.17731,0.76065,1384.2
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.6673,-0.38497,0.63758,4840,0.40588,-0.90574,-0.12209,4884.4,0.62448,0.17731,0.76065,1383.5
> volume #1 level 4.063
> volume #1 level 3.601
> view matrix models
> #5,-0.6673,-0.38497,0.63758,4835.4,0.40588,-0.90574,-0.12209,4888.2,0.62448,0.17731,0.76065,1408.4
> view matrix models
> #5,-0.6673,-0.38497,0.63758,4834.3,0.40588,-0.90574,-0.12209,4884.3,0.62448,0.17731,0.76065,1408.6
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.58509,-0.36049,0.72644,4830.5,0.39949,-0.90766,-0.12866,4884.6,0.70575,0.21493,0.67507,1409.5
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.11.1 (2026-01-23)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple
Python: 3.11.9
Locale: en_US.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro18,3
Model Number: Z15G001X8LL/A
Chip: Apple M1 Pro
Total Number of Cores: 10 (8 Performance and 2 Efficiency)
Memory: 32 GB
System Firmware Version: 13822.81.10
OS Loader Version: 13822.81.10
Software:
System Software Overview:
System Version: macOS 26.3.1 (a) (25D771280a)
Kernel Version: Darwin 25.3.0
Time since boot: 16 days, 56 minutes
Graphics/Displays:
Apple M1 Pro:
Chipset Model: Apple M1 Pro
Type: GPU
Bus: Built-In
Total Number of Cores: 16
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
LG ULTRAWIDE:
Resolution: 2560 x 1080 (UW-UXGA - Ultra Wide - Ultra Extended Graphics Array)
UI Looks like: 2560 x 1080 @ 50.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.1
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.12
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.26.0
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.3.2
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.1.0
roman-numerals-py: 4.1.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8.3
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.2.0
stack-data: 0.6.3
starlette: 0.52.1
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
urllib3: 2.6.3
uvicorn: 0.40.0
wcwidth: 0.3.2
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
Change History (2)
comment:1 by , 11 hours ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in swap_buffers exposing status line during Mac wakeup, macOS 26 |
comment:2 by , 9 hours ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Work-around for this Qt 6.10 bug added a week ago stop handling status line expose events.