ChimeraX bug report submission

[daniel.larsson@…]

The following bug report has been submitted:
Platform:        macOS-13.7.8-arm64-arm-64bit
ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC)
Description
Load an RNA molecule. Hide all atoms and cartoons. Then show atoms and cartoon for part of the RNA molecule. Then run the command "cartoon suppress true". This will show cartoon for the full molecule.

Log:
UCSF ChimeraX version: 1.11.1 (2026-01-23)  
© 2016-2025 Regents of the University of California. All rights reserved.  

> open /Users/dalar193/wd/deltaRibosomes/EMDB_previews.cxs format session

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0065, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 5mdz_emd_3493.map as #1.15, grid size 400,400,400, pixel 1.04, shown at
level 0.1, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.01, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.01, step 1, values float32  
Opened d9_j169_conc as #2.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.01, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.009, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.009, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.009, step 1, values float32  
Opened d10_j064_conc as #10.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.009, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.35, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J230_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.056, step 1, values float32  
Opened dE_J231_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J232_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J233_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J228_conc as #20.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.056, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.25, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.07, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.065, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Log from Mon Oct 20 14:51:37 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open /Users/dalar193/wd/deltaRibosomes/EMDB_previews.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0065, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 5mdz_emd_3493.map as #1.15, grid size 400,400,400, pixel 1.04, shown at
level 0.1, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.35, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J230_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.056, step 1, values float32  
Opened dE_J231_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J232_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J233_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.056, step 1, values float32  
Opened dE_J228_conc as #20.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.056, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.25, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.07, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.065, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Log from Sun Oct 12 20:03:57 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open EMDB_previews.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0065, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 5mdz_emd_3493.map as #1.15, grid size 400,400,400, pixel 1.04, shown at
level 0.1, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.38, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.35, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.17, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.25, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.07, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.07, step 1, values float32  
Log from Sun Sep 14 21:47:09 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open figure_H89.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0065, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 5mdz_emd_3493.map as #1.15, grid size 400,400,400, pixel 1.04, shown at
level 0.1, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.02, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.013, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.009, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.3, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.35, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.22, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.22, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.25, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.08, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Log from Mon Aug 25 21:17:17 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open figure_D2449_new.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0065, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.02, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.013, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.013, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.009, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.3, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.011, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.35, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.35, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.22, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.22, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.25, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.25, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.08, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.08, step 1, values float32  
Log from Sun Aug 17 22:37:00 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open figure_A-loop_new.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.02, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.016, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.014, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.014, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.016, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.5, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.22, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.22, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.4, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.1, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Log from Fri Jul 4 17:41:34 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open /Users/dalar193/wd/deltaRibosomes/figure_A-loop_new.cxs

Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.11, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.025, step 1, values float32  
Opened 8cam_map as #1.13, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.01, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.02, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.016, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.014, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.014, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.016, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.012, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0936, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0768, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0872, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.015, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.012, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0779, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0807, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0701, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.5, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.5, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 1.19, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.22, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.22, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.23, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.4, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.4, step 1, values float32  
Opened dE_J239_c0 as #23.10, grid size 391,421,391, pixel 0.7,0.7,0.7, shown
at level 0.1, step 1, values float32  
Opened dE_J240_c1 as #23.1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J241_c2 as #23.2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J242_c3 as #23.3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J243_c4 as #23.4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J244_c5 as #23.5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J245_c6 as #23.6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J246_c7 as #23.7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J247_c8 as #23.8, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Opened dE_J248_c9 as #23.9, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.1, step 1, values float32  
Log from Thu Jul 3 21:26:40 2025UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open /Users/dalar193/wd/deltaRibosomes/figure_with_maps.cxs

Opened 8b0x_map as #1.3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.23, step 1, values float32  
Opened 8cgk_map as #1.6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.004, step 1, values float32  
Opened 7bv8_map as #1.8, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0847, step 1, values float32  
Opened 7o1a_map as #1.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.012, step 1, values float32  
Opened 8emm_map as #1.1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.02, step 1, values float32  
Opened d9_ape as #2.1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.025, step 1, values float32  
Opened d9_ape1 as #2.2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.016, step 1, values float32  
Opened d9_ape2 as #2.3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.014, step 1, values float32  
Opened d9_ape3 as #2.4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.014, step 1, values float32  
Opened d9_pe as #2.5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.016, step 1, values float32  
Opened d9_e as #2.6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.012, step 1, values float32  
Opened d9_ape as #3.1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0963, step 1, values float32  
Opened d9_ape1 as #3.2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d9_ape2 as #3.3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d9_ape3 as #3.4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d9_pe as #3.5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.032, step 1, values float32  
Opened d9_e as #3.6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.032, step 1, values float32  
Opened d9_J83_cl0 as #4.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.4, step 1, values float32  
Opened d9_J84_cl1 as #4.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.5, step 1, values float32  
Opened d9_J85_cl2 as #4.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.47, step 1, values float32  
Opened d9_J86_cl3 as #4.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.5, step 1, values float32  
Opened d9_J87_cl4 as #4.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.4, step 1, values float32  
Opened d9_J88_cl5 as #4.5, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.48, step 1, values float32  
Opened d9_J89_cl6 as #4.6, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.5, step 1, values float32  
Opened d9_J90_cl7 as #4.7, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.5, step 1, values float32  
Opened d9_J91_cl8 as #4.8, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.55, step 1, values float32  
Opened d9_J92_cl9 as #4.9, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.52, step 1, values float32  
Opened d9_J83_cl0 as #5.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J84_cl1 as #5.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J85_cl2 as #5.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J86_cl3 as #5.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J87_cl4 as #5.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J88_cl5 as #5.5, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J89_cl6 as #5.6, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J90_cl7 as #5.7, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J91_cl8 as #5.8, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d9_J92_cl9 as #5.9, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_ape as #10.1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.015, step 1, values float32  
Opened d10_pe as #10.2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.015, step 1, values float32  
Opened d10_e as #10.3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.012, step 1, values float32  
Opened d10_ape as #11.1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d10_pe as #11.2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d10_e as #11.3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.032, step 1, values float32  
Opened d10_J53_c0 as #12.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.36, step 1, values float32  
Opened d10_J54_c1 as #12.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.4, step 1, values float32  
Opened d10_J55_c2 as #12.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.41, step 1, values float32  
Opened d10_J56_c3 as #12.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.43, step 1, values float32  
Opened d10_J57_c4 as #12.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.42, step 1, values float32  
Opened d10_J58_c5 as #12.5, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.42, step 1, values float32  
Opened d10_J59_c6 as #12.6, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.43, step 1, values float32  
Opened d10_J60_c7 as #12.7, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J61_c8 as #12.8, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.41, step 1, values float32  
Opened d10_J62_c9 as #12.9, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.42, step 1, values float32  
Opened d10_J53_c0 as #13.10, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J54_c1 as #13.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J55_c2 as #13.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J56_c3 as #13.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J57_c4 as #13.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J58_c5 as #13.5, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J59_c6 as #13.6, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J60_c7 as #13.7, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J61_c8 as #13.8, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened d10_J62_c9 as #13.9, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.44, step 1, values float32  
Opened dE_J111_ape as #20.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.22, step 1, values float32  
Opened dE_J112_ap as #20.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.22, step 1, values float32  
Opened dE_J113_pe as #20.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.23, step 1, values float32  
Opened dE_J124_e as #20.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.17, step 1, values float32  
Opened dE_J111_ape as #21.1, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.16, step 1, values float32  
Opened dE_J112_ap as #21.2, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.16, step 1, values float32  
Opened dE_J113_pe as #21.3, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.16, step 1, values float32  
Opened dE_J124_e as #21.4, grid size 391,421,391, pixel 0.705,0.705,0.705,
shown at level 0.16, step 1, values float32  
Opened delE50S_homogen_J36_0.70469Apix.mrc as #7, grid size 391,421,391, pixel
0.705,0.705,0.705, shown at level 0.309, step 1, values float32  
Log from Fri Apr 19 16:41:09 2024 Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle  
  

> mousemode middleMode "center or translate"

UCSF ChimeraX version: 1.7.1 (2024-01-23)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> set bgColor white

> default stick

Unknown command: default stick  

> style stick

Changed 0 atom styles  

> volume style mesh

No volumes specified  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD22586_7k00_x1.0067.mrc id
> 1.1 name 7k00_map

Opened 7k00_map as #1, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.046, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/7k00_x1.0067_LSQ-23S.pdb
> id 1.2 name 7k00

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/7k00_x1.0067_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AC5 2 VAL X 3 LYS X 5 0  
Start residue of secondary structure not found: SHEET 2 AC5 2 VAL X 17 VAL X
19 -1  
Start residue of secondary structure not found: SHEET 1 AC6 2 LEU X 34 LYS X
36 0  
Start residue of secondary structure not found: SHEET 2 AC6 2 ALA X 61 ARG X
63 -1  
Start residue of secondary structure not found: SHEET 1 AC7 4 ARG X 101 LEU X
105 0  
43 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 1 AD9 3 ARG B 95 LYS B 99
0  
Start residue of secondary structure not found: SHEET 2 AD9 3 VAL B 102 SER B
106 -1  
Start residue of secondary structure not found: SHEET 3 AD9 3 VAL B 113 GLN B
116 -1  
Start residue of secondary structure not found: SHEET 1 AE1 3 GLN C 18 ASN C
20 0  
Start residue of secondary structure not found: SHEET 2 AE1 3 GLN C 2 ILE C 4
-1  
Start residue of secondary structure not found: SHEET 3 AE1 3 VAL C 37 PRO C
38 -1  
24 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 1 AE8 3 VAL F 89 VAL F 90
0  
Start residue of secondary structure not found: SHEET 2 AE8 3 THR F 121 VAL F
122 1  
Start residue of secondary structure not found: SHEET 3 AE8 3 LYS F 141 ILE F
142 1  
Start residue of secondary structure not found: SHEET 1 AE9 4 LYS G 62 ILE G
65 0  
Start residue of secondary structure not found: SHEET 2 AE9 4 VAL G 101 ASP G
106 -1  
Start residue of secondary structure not found: SHEET 3 AE9 4 PHE G 31 ALA G
35 -1  
7 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 1 AF3 4 VAL I 47 SER I 52
0  
Start residue of secondary structure not found: SHEET 2 AF3 4 ILE I 35 ILE I
40 -1  
Start residue of secondary structure not found: SHEET 3 AF3 4 ARG I 25 ARG I
30 -1  
Start residue of secondary structure not found: SHEET 4 AF3 4 SER I 91 ASP I
93 1  
End residue of secondary structure not found: SHEET 1 AF4 4 LYS L 10 VAL L 14
0  
Start residue of secondary structure not found: SHEET 2 AF4 4 TYR L 2 SER L 7
-1  
Start residue of secondary structure not found: SHEET 3 AF4 4 VAL L 38 ALA L
42 -1  
Start residue of secondary structure not found: SHEET 4 AF4 4 VAL L 47 ILE L
49 -1  
Start residue of secondary structure not found: SHEET 1 AF5 4 THR L 19 LEU L
22 0  
Start residue of secondary structure not found: SHEET 2 AF5 4 TRP L 92 SER L
102 -1  
37 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 3 AG7 4 ARG Q 77 GLU Q 83
-1  
Start residue of secondary structure not found: SHEET 4 AG7 4 HIS Q 46 ALA Q
47 1  
Start residue of secondary structure not found: SHEET 1 AG8 2 VAL R 13 ARG R
18 0  
Start residue of secondary structure not found: SHEET 2 AG8 2 ALA R 24 PHE R
29 -1  
Start residue of secondary structure not found: SHEET 1 AG9 2 LEU R 33 VAL R
40 0  
Start residue of secondary structure not found: SHEET 2 AG9 2 ARG R 45 SER R
52 -1  
21 messages similar to the above omitted  
  
Chain information for 7k00 #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD15793_8b0x.mrc id 1.3
> name 8b0x_map

Opened 8b0x_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.608, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/8b0x_LSQ-23S.cif id 1.5
> name 8b0x

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/8b0x_LSQ-23S.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' near line 4126  
Unknown polymer entity '5' near line 4378  
Unknown polymer entity '6' near line 39620  
Unknown polymer entity '7' near line 41380  
Unknown polymer entity '8' near line 43020  
Unknown polymer entity '9' near line 44677  
48 messages similar to the above omitted  
Missing or incomplete sequence information. Inferred polymer connectivity.  
  
  
Chain information for 8b0x #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD16646_8cgk_x1.0067.mrc id
> 1.6 name 8cgk_map

Opened 8cgk_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0122, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/8cgk_x1.0067_LSQ-23S.pdb
> id 1.7 name 8cgk

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/8cgk_x1.0067_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AA1 4 PHE A 20 LYS A 25 0  
Start residue of secondary structure not found: SHEET 2 AA1 4 GLU A 7 SER A 13
-1  
Start residue of secondary structure not found: SHEET 3 AA1 4 GLN A 45 LYS A
53 -1  
Start residue of secondary structure not found: SHEET 4 AA1 4 GLU A 35 ASP A
40 -1  
Start residue of secondary structure not found: SHEET 1 AA2 3 LYS C 15 LYS C
16 0  
151 messages similar to the above omitted  
  
Chain information for 8cgk #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD30215_7bv8_x1.00083.mrc id
> 1.8 name 7bv8_map

Opened 7bv8_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.189, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/7bv8_x1.00083_LSQ-23S.pdb id
> 1.9 name 7bv8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/7bv8_x1.00083_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AE6 3 THR A 35 GLU A 39 0  
Start residue of secondary structure not found: SHEET 2 AE6 3 THR A 4 GLN A 9
-1  
Start residue of secondary structure not found: SHEET 3 AE6 3 VAL A 55 GLU A
58 -1  
Start residue of secondary structure not found: SHEET 1 AE7 2 LEU B 28 VAL B
30 0  
Start residue of secondary structure not found: SHEET 2 AE7 2 LYS B 37 LEU B
39 -1  
3 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 AE8 4 GLU C 35 PHE C 39
-1  
Start residue of secondary structure not found: SHEET 1 AE9 3 LYS E 15 LYS E
16 0  
Start residue of secondary structure not found: SHEET 2 AE9 3 PHE E 22 HIS E
24 -1  
Start residue of secondary structure not found: SHEET 3 AE9 3 ALA E 48 MET E
49 -1  
Start residue of secondary structure not found: SHEET 1 AF1 4 LYS F 2 VAL F 3
0  
Start residue of secondary structure not found: SHEET 2 AF1 4 GLN F 35 ARG F
36 1  
2 messages similar to the above omitted  
  
Chain information for 7bv8 #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
V | No description available  
W | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD12694_7o1a_x0.9952.mrc id
> 1.10 name 7o1a_map

Opened 7o1a_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0279, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/7o1a_x0.9952_LSQ-23S.pdb
> id 1.11 name 7o1a

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/7o1a_x0.9952_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AA1 1 0 0 0  
PDB SEQRES record for chain A is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 7o1a #2  
---  
Chain | Description  
A | No description available  
AA | No description available  
AB | No description available  
AL | No description available  
AU | No description available  
B | No description available  
B0 | No description available  
B1 | No description available  
B2 | No description available  
B3 | No description available  
B4 | No description available  
B5 | No description available  
B7 | No description available  
B8 | No description available  
BA | No description available  
BD | No description available  
BM | No description available  
BU | No description available  
BV | No description available  
BW | No description available  
BX | No description available  
BY | No description available  
BZ | No description available  
  

> rename #1 references

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job207_classAPE_0.70469Apix.mrc
> id 2.1 name d9_ape

Opened d9_ape as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0289, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job191_APe1_0.70469Apix.mrc
> id 2.2 name d9_ape1

Opened d9_ape1 as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0292, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job192_ape2_0.70469Apix.mrc
> id 2.3 name d9_ape2

Opened d9_ape2 as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0262, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job193_APe3_0.70469Apix.mrc
> id 2.4 name d9_ape3

Opened d9_ape3 as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.028, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job188_PE_0.70469Apix.mrc
> id 2.5 name d9_pe

Opened d9_pe as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0288, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_refine3d_job190_e_0.70469Apix.mrc
> id 2.6 name d9_e

Opened d9_e as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0246, step 2, values float32  

> rename #2 d9

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job216_classAPE_0.70469Apix.mrc
> id 3.1 name d9_ape

Opened d9_ape as #3, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0963, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job211_classAPE1_0.70469Apix.mrc
> id 3.2 name d9_ape1

Opened d9_ape1 as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0936, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job212_classAPE2_0.70469Apix.mrc
> id 3.3 name d9_ape2

Opened d9_ape2 as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0768, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job213_classAPE3_0.70469Apix.mrc
> id 3.4 name d9_ape3

Opened d9_ape3 as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0872, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job208_classPE_0.70469Apix.mrc
> id 3.5 name d9_pe

Opened d9_pe as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0944, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_localres_job210_classE_0.70469Apix.mrc
> id 3.6 name d9_e

Opened d9_e as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0736, step 2, values float32  

> rename #3 d9-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J83_PTCclass0_0.70469Apix.mrc
> id 4.10 name d9_J83_cl0

Opened d9_J83_cl0 as #4, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.884, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J84_PTCclass1_0.70469Apix.mrc
> id 4.1 name d9_J84_cl1

Opened d9_J84_cl1 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.894, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J85_PTCclass2_0.70469Apix.mrc
> id 4.2 name d9_J85_cl2

Opened d9_J85_cl2 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.885, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J86_PTCclass3_0.70469Apix.mrc
> id 4.3 name d9_J86_cl3

Opened d9_J86_cl3 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.89, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J87_PTCclass4_0.70469Apix.mrc
> id 4.4 name d9_J87_cl4

Opened d9_J87_cl4 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.888, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J88_PTCclass5_0.70469Apix.mrc
> id 4.5 name d9_J88_cl5

Opened d9_J88_cl5 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.878, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J89_PTCclass6_0.70469Apix.mrc
> id 4.6 name d9_J89_cl6

Opened d9_J89_cl6 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.887, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J90_PTCclass7_0.70469Apix.mrc
> id 4.7 name d9_J90_cl7

Opened d9_J90_cl7 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.888, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J91_PTCclass8_0.70469Apix.mrc
> id 4.8 name d9_J91_cl8

Opened d9_J91_cl8 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.919, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_NU_J92_PTCclass9_0.70469Apix.mrc
> id 4.9 name d9_J92_cl9

Opened d9_J92_cl9 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.883, step 2, values float32  

> rename #4 d9-PTC

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J127_PTCclass0_0.70469Apix.mrc
> id 5.10 name d9_J83_cl0

Opened d9_J83_cl0 as #5, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.33, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J128_PTCclass1_0.70469Apix.mrc
> id 5.1 name d9_J84_cl1

Opened d9_J84_cl1 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.42, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J129_PTCclass2_0.70469Apix.mrc
> id 5.2 name d9_J85_cl2

Opened d9_J85_cl2 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J130_PTCclass3_0.70469Apix.mrc
> id 5.3 name d9_J86_cl3

Opened d9_J86_cl3 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.39, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J131_PTCclass4_0.70469Apix.mrc
> id 5.4 name d9_J87_cl4

Opened d9_J87_cl4 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J132_PTCclass5_0.70469Apix.mrc
> id 5.5 name d9_J88_cl5

Opened d9_J88_cl5 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.35, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J133_PTCclass6_0.70469Apix.mrc
> id 5.6 name d9_J89_cl6

Opened d9_J89_cl6 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J134_PTCclass7_0.70469Apix.mrc
> id 5.7 name d9_J90_cl7

Opened d9_J90_cl7 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.39, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J135_PTCclass8_0.70469Apix.mrc
> id 5.8 name d9_J91_cl8

Opened d9_J91_cl8 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.41, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta9_LF_J136_PTCclass9_0.70469Apix.mrc
> id 5.9 name d9_J92_cl9

Opened d9_J92_cl9 as #6, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.37, step 2, values float32  

> rename #5 d9-PTC-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J83-coot-6.pdb
> id 6.10 name d9_J83_cl0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J83-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J83_cl0 #6  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J84-coot-6.pdb
> id 6.1 name d9_J84_cl1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J84-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J84_cl1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J85-coot-6.pdb
> id 6.2 name d9_J85_cl2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J85-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J85_cl2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J86-coot-6.pdb
> id 6.3 name d9_J86_cl3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J86-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J86_cl3 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-6.pdb
> id 6.4 name d9_J87_cl4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J87_cl4 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J88-coot-6.pdb
> id 6.5 name d9_J88_cl5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J88-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J88_cl5 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J89-coot-6.pdb
> id 6.6 name d9_J89_cl6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J89-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J89_cl6 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J90-coot-6.pdb
> id 6.7 name d9_J90_cl7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J90-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J90_cl7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J91-coot-6.pdb
> id 6.8 name d9_J91_cl8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J91-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J91_cl8 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J92-coot-6.pdb
> id 6.9 name d9_J92_cl9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J92-coot-6.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J92_cl9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #6 d9-PTC-models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_refine3d_job086_APE_0.70469Apix.mrc
> id 10.1 name d10_ape

Opened d10_ape as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0256, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_refine3d_job085_PE_0.70469Apix.mrc
> id 10.2 name d10_pe

Opened d10_pe as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0264, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_refine3d_job084_E_0.70469Apix.mrc
> id 10.3 name d10_e

Opened d10_e as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.024, step 2, values float32  

> rename #10 d10

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_localres_job095_classAPE_0.70469Apix.mrc
> id 11.1 name d10_ape

Opened d10_ape as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0779, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_localres_job094_classPE_0.70469Apix.mrc
> id 11.2 name d10_pe

Opened d10_pe as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0807, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_localres_job093_classE_0.70469Apix.mrc
> id 11.3 name d10_e

Opened d10_e as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.0701, step 2, values float32  

> rename #11 d10-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J53_PTCclass0_0.70469Apix.mrc
> id 12.10 name d10_J53_c0

Opened d10_J53_c0 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.789, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J54_PTCclass1_0.70469Apix.mrc
> id 12.1 name d10_J54_c1

Opened d10_J54_c1 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.796, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J55_PTCclass2_0.70469Apix.mrc
> id 12.2 name d10_J55_c2

Opened d10_J55_c2 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.79, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J56_PTCclass3_0.70469Apix.mrc
> id 12.3 name d10_J56_c3

Opened d10_J56_c3 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.797, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J57_PTCclass4_0.70469Apix.mrc
> id 12.4 name d10_J57_c4

Opened d10_J57_c4 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J58_PTCclass5_0.70469Apix.mrc
> id 12.5 name d10_J58_c5

Opened d10_J58_c5 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J59_PTCclass6_0.70469Apix.mrc
> id 12.6 name d10_J59_c6

Opened d10_J59_c6 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.8, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J60_PTCclass7_0.70469Apix.mrc
> id 12.7 name d10_J60_c7

Opened d10_J60_c7 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.799, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J61_PTCclass8_0.70469Apix.mrc
> id 12.8 name d10_J61_c8

Opened d10_J61_c8 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_NU_J62_PTCclass9_0.70469Apix.mrc
> id 12.9 name d10_J62_c9

Opened d10_J62_c9 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.795, step 2, values float32  

> rename #12 d10-PTC

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J96_PTCclass0_0.70469Apix.mrc
> id 13.10 name d10_J53_c0

Opened d10_J53_c0 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.19, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J97_PTCclass1_0.70469Apix.mrc
> id 13.1 name d10_J54_c1

Opened d10_J54_c1 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J98_PTCclass2_0.70469Apix.mrc
> id 13.2 name d10_J55_c2

Opened d10_J55_c2 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.2, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J99_PTCclass3_0.70469Apix.mrc
> id 13.3 name d10_J56_c3

Opened d10_J56_c3 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.23, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J100_PTCclass4_0.70469Apix.mrc
> id 13.4 name d10_J57_c4

Opened d10_J57_c4 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.2, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J101_PTCclass5_0.70469Apix.mrc
> id 13.5 name d10_J58_c5

Opened d10_J58_c5 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J102_PTCclass6_0.70469Apix.mrc
> id 13.6 name d10_J59_c6

Opened d10_J59_c6 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.23, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J103_PTCclass7_0.70469Apix.mrc
> id 13.7 name d10_J60_c7

Opened d10_J60_c7 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.24, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J104_PTCclass8_0.70469Apix.mrc
> id 13.8 name d10_J61_c8

Opened d10_J61_c8 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delta10_LF_J105_PTCclass9_0.70469Apix.mrc
> id 13.9 name d10_J62_c9

Opened d10_J62_c9 as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 1.23, step 2, values float32  

> rename #13 d10-PTC-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-3.pdb
> id 14.10 name d10_J53_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J53_c0 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-3.pdb
> id 14.1 name d10_J54_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J54_c1 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-3.pdb
> id 14.2 name d10_J55_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J55_c2 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-3.pdb
> id 14.3 name d10_J56_c3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J56_c3 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-3.pdb
> id 14.4 name d10_J57_c4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J57_c4 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-3.pdb
> id 14.5 name d10_J58_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J58_c5 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-3.pdb
> id 14.6 name d10_J59_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J59_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-3.pdb
> id 14.7 name d10_J60_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J60_c7 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-3.pdb
> id 14.8 name d10_J61_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J61_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-3.pdb
> id 14.9 name d10_J62_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J62_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #14 d10-PTC-models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_HOMO_J111_APE_0.70469Apix.mrc
> id 20.1 name dE_ape

Opened dE_ape as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.378, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_HOMO_J112_AP_0.70469Apix.mrc
> id 20.2 name dE_ap

Opened dE_ap as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.353, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_HOMO_J113_PE_0.70469Apix.mrc
> id 20.3 name dE_pe

Opened dE_pe as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.396, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_HOMO_J124_E_0.70469Apix.mrc
> id 20.4 name dE_e

Opened dE_e as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.336, step 2, values float32  

> rename #20 dE

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_SHARP_J111_APE_0.70469Apix.mrc
> id 21.1 name dE_ape

Opened dE_ape as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.565, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_SHARP_J112_AP_0.70469Apix.mrc
> id 21.2 name dE_ap

Opened dE_ap as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.452, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_SHARP_J113_PE_0.70469Apix.mrc
> id 21.3 name dE_pe

Opened dE_pe as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.593, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/deltaE_SHARP_J124_E_0.70469Apix.mrc
> id 21.4 name dE_e

Opened dE_e as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown at
level 0.436, step 2, values float32  

> rename #21 dE-sharp

> hide cartoons

> hide atoms

> style stick

Changed 825834 atom styles  

> hide #!1.1 models

> show #!1.1 models

> hide #!1.2 models

> show #!1.2 models

> hide #!*.* models

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
> coot-1.pdb id 22.1 name dE_J111_ape

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J111_ape #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-
> coot-1.pdb id 22.2 name dE_J112_ap

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J112_ap #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-
> coot-1.pdb id 22.3 name dE_J113_pe

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J113_pe #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-
> coot-1.pdb id 22.4 name dE_J124_e

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J124_e #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #22 dE-models

> hide #!*.* models

> rename #20.1 dE_J111_ape

> rename #20.2 dE_J112_ap

> rename #20.3 dE_J113_pe

> rename #20.4 dE_J124_e

> rename #21.1 dE_J111_ape

> rename #21.2 dE_J112_ap

> rename #21.3 dE_J113_pe

> rename #21.4 dE_J124_e

> show #!2.1 models

> hide #!2.1 models

> show #!2.2 models

> volume step 1

> style stick

Changed 866300 atom styles  

> volume style mesh

> hide #!2.2 models

> show #!2.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.1 atoms

> show #!1.1 models

> hide #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

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> show #!1.11 models

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> hide #!4.1 models

> hide #!4.5 models

> show #!6.2 models

> show #!6.3 models

> show #!6.4 models

> show #!6.5 models

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> show #!6.7 models

> show #!6.8 models

> show #!6.9 models

> show #!14.1 models

> show #!14.2 models

> show #!14.3 models

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> show #!14.5 models

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> show #!14.7 models

> show #!14.8 models

> show #!14.9 models

> show #!14.10 models

> show #!22.1 models

> show #!22.2 models

> show #!22.3 models

> show #!22.4 models

> show #!1.2,5,7,9,11#!6.1-9#!14.1-10#!22.1-4 atoms

> hide #!22.3 models

> hide #!22.2 models

> hide #!22.1 models

> show #!22.1 models

> hide #!22.1 models

> hide #!22.4 models

> hide #!14.10 models

> hide #!14.9 models

> hide #!14.8 models

> hide #!14.7 models

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> hide #!14.5 models

> hide #!14.4 models

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> hide #!14.2 models

> hide #!14.1 models

> hide #!6.9 models

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> hide #!6.1 models

> hide #!6 models

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> hide #!1.7 models

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> hide #!1.11 models

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> show #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

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> show #!6.2 models

> hide #6.1.2 models

> hide #6.*.2

> hide #!6.*.2 models

> hide #!14.*.2 models

> hide #!22.*.2 models

> hide #6.1.1 models

> show #6.1.1 models

> hide #6.1.1 models

> show #6.1.1 models

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> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> color #1.2 #d7d7d7ff

> color #1.2 #acacacff

> color #1.2 #9f9f9fff

> color #1.2 #8d8d8dff

> color #1.2 #949494ff

> color #1.2 grey

> ui mousemode right clip

> show #!3.2 models

> hide #!2.2 models

> hide #!1.2#!6.1-2 atoms

> show #!1.2#!6.1-2 cartoons

> nucrib

Unknown command: nucrib  

> cartoon style nucleic xsection oval width 1.6 thickness 1.6

> nucleotides stubs

[Repeated 1 time(s)]

> show #!1.2#!6.1-2 atoms

[Repeated 1 time(s)]

> nucleotides slab

> hide #!1.2 models

> hide #!6.2 models

> cartoon style protein modeHelix tube radius 2 sides 24

> hide #!6.1 cartoons

> show #!6.1 cartoons

> nucleotides fill

> preset ribbon

Using preset: Cartoons/Nucleotides / Ribbons/Slabs  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> cartoon tether

7k00 #1.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
8b0x #1.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
8cgk #1.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
7bv8 #1.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
7o1a #1.11  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J83_cl0 #6.10  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J84_cl1 #6.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J85_cl2 #6.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J86_cl3 #6.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J87_cl4 #6.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J88_cl5 #6.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J89_cl6 #6.6  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J90_cl7 #6.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J91_cl8 #6.8  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J92_cl9 #6.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J53_c0 #14.10  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J54_c1 #14.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J55_c2 #14.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J56_c3 #14.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J57_c4 #14.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J58_c5 #14.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J59_c6 #14.6  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J60_c7 #14.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J61_c8 #14.8  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J62_c9 #14.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J111_ape #22.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J112_ap #22.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J113_pe #22.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J124_e #22.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  

> cartoon tether

7k00 #1.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
8b0x #1.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
8cgk #1.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
7bv8 #1.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
7o1a #1.11  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J83_cl0 #6.10  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J84_cl1 #6.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J85_cl2 #6.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J86_cl3 #6.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J87_cl4 #6.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J88_cl5 #6.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J89_cl6 #6.6  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J90_cl7 #6.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J91_cl8 #6.8  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d9_J92_cl9 #6.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J53_c0 #14.10  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J54_c1 #14.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J55_c2 #14.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J56_c3 #14.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J57_c4 #14.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J58_c5 #14.5  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J59_c6 #14.6  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J60_c7 #14.7  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J61_c8 #14.8  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
d10_J62_c9 #14.9  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J111_ape #22.1  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J112_ap #22.2  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J113_pe #22.3  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  
dE_J124_e #22.4  
\- scales 1.0  
\- shapes cone  
\- sides 4  
\- opacity 0.5  

> preset cartoons/nucleotides ribbons/slabs

Using preset: Cartoons/Nucleotides / Ribbons/Slabs  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> volume #3.2 style surface

> volume #3.2 style mesh

> graphics silhouettes false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting flat

> lighting full

> lighting soft

> lighting simple

> graphics silhouettes false

> lighting soft

> lighting simple

[Repeated 1 time(s)]

> hide #!3.2 models

> show #!2.2 models

> show #!6.2 models

> hide #!6.1 models

> show #!6.3 models

> hide #!6.2 models

> show #!6.4 models

> hide #!6.3 models

> show #!6.5 models

> hide #!6.4 models

> show #!6.6 models

> hide #!6.5 models

> show #!6.7 models

> hide #!6.6 models

> show #!6.8 models

> hide #!6.7 models

> show #!6.9 models

> hide #!6.8 models

> show #!6.10 models

> hide #!6.9 models

> hide #!6.10 models

> show #!6.1 models

> nucleotides #!6.1 fill

> style nucleic & #!6.1 stick

Changed 9184 atom styles  

> nucleotides #!6.1 fill

> style nucleic & #!6.1 stick

Changed 9184 atom styles  

> nucleotides #!6.1 atoms

> style nucleic & #!6.1 stick

Changed 9184 atom styles  

> nucleotides #!6.1 tube/slab shape box

[Repeated 1 time(s)]

> nucleotides #!6.1 ladder

> nucleotides #!6.1 fill

> style nucleic & #!6.1 stick

Changed 9184 atom styles  

> hide #!6.1 cartoons

> view #6.10/A:2581

No objects specified.  

> zoom #6.10/A:2581

Expected a number > 0 or a keyword  

> zoom #6.10/a:2581

Expected a number > 0 or a keyword  

> zoom #6.10/a

Expected a number > 0 or a keyword  

> view #6.10/a:2581

No displayed objects specified.  

> show #!6.10 models

> view #6.10/a:2581

> nucleotides #!6.1,10 fill

> style nucleic & #!6.1,10 stick

Changed 17492 atom styles  

> hide #!6.1,10 cartoons

> show #!6.1,10 cartoons

[Repeated 1 time(s)]

> cartoon suppressBackboneDisplay false

> show #!14.8 models

> hide #!14.8 models

> show #!14.8 models

> hide #!14.8 models

> show #!6.2 models

> show #!6.3 models

> show #!6.4 models

> show #!6.5 models

> show #!6.6 models

> show #!6.7 models

> show #!6.8 models

> show #!6.9 models

> nucleotides fill

> show #!14.10 models

> hide #!14.10 models

> show #!14.10 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!14.10 models

> hide #!6.10 models

> hide #!6.9 models

> hide #!6.8 models

> hide #!6.7 models

> hide #!6.6 models

> hide #!6.5 models

> hide #!6.4 models

> hide #!6.3 models

> hide #!6.2 models

> show #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!6.1 models

> show #!6.1 models

> hide #!1.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> color #6.1/Y blue

> color #6.*/Y red

> show #!6.2 models

> hide #!6.1 models

> hide #!6.2 models

> show #!6.1 models

> show #!6.2 models

> show #!14.1 models

> hide #!6.2 models

> hide #!6.1 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> show #!14.3 models

> show #!14.4 models

> show #!14.6 models

> show #!14.5 models

> show #!14.7 models

> show #!14.8 models

> show #!14.9 models

> show #!14.10 models

> hide #!14.10 models

> hide #!14.9 models

> hide #!14.8 models

> hide #!14.7 models

> hide #!14.6 models

> hide #!14.5 models

> hide #!14.4 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!1.1 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> show #!1.2#!6.1 atoms

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
> noHOH.pdb id 1.12 name d9coot75noPTC

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
noHOH.pdb  
---  
warnings | End residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l 125 1 17  
Start residue of secondary structure not found: SHEET 1 49 2 GLY l 37 ARG l 40
0  
Start residue of secondary structure not found: SHEET 2 49 2 LEU l 95 PRO l 98
-1  
End residue of secondary structure not found: SHEET 3 50 4 SER l 30 VAL l 36
-1 N LEU l 33 O TYR l 103  
Start residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l
102 -1 N LEU l 102 O LEU l 33  
End residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36 0  
Start residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l
133 -1 N LYS l 133 O SER l 30  
Cannot find LINK/SSBOND residue A (1784 )  
Cannot find LINK/SSBOND residue K (3123 )  
Cannot find LINK/SSBOND residue K (3129 )  
Cannot find LINK/SSBOND residue MG (3197 )  
Cannot find LINK/SSBOND residue MG (3220 )  
6 messages similar to the above omitted  
  
Chain information for d9coot75noPTC #7  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> style #!1.2,12#!6.1 stick

Changed 297009 atom styles  

> hide #!1.2 models

> color #1.12 pint

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color #1.12 pink

> color #1.12 plum

> hide #!1.12#!6.1 cartoons

> show #!1.12#!6.1 cartoons

> color #1.12 gray

> show #!14.10 models

> hide #!14.10 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> color #6.*/Y light sky blue

> show #!14.10 models

> hide #!14.10 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> color #6.*/Y indigo

> color #6.*/Z blue

> show #!5.1 models

> hide #!4.1 models

> nucleotides #!1.12#!6.1 fill

> style nucleic & #!1.12#!6.1 stick

Changed 101052 atom styles  

> nucleotides plain

Missing or invalid "representation" argument: Should be one of 'atoms',
'fill', 'ladder', 'slab', 'stubs', or 'tube/slab'  

> nucleotides atoms

> nucleotides fill

> cartoon teather

Expected an atoms specifier or a keyword  

> cartoon tether cylinder

Expected an atomic structures specifier or a keyword  

> cartoon tether cone

Expected an atomic structures specifier or a keyword  

> hide #!1.12#!6.1 cartoons

> show #!1.12#!6.1 cartoons

[Repeated 1 time(s)]

> hide #!1.12#!6.1 cartoons

> show #!1.12#!6.1 cartoons

> hide #!1.12#!6.1 cartoons

> cartoon tether opacity 0

> show #!1.12#!6.1 atoms

> show #!1.12#!6.1 cartoons

> view

> view #6.1/Y:76

> view matrix

view matrix camera
0.69679,0.46022,0.55016,165.99,-0.5672,-0.11597,0.81538,226.04,0.43906,-0.8802,0.18023,147.13  
view matrix models
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.3,1,0,0,0,0,1,0,0,0,0,1,0,#1.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.5,1,0,0,0,0,1,0,0,0,0,1,0,#1.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.6,1,0,0,0,0,1,0,0,0,0,1,0,#1.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.7,1,0,0,0,0,1,0,0,0,0,1,0,#1.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.8,1,0,0,0,0,1,0,0,0,0,1,0,#1.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.9,1,0,0,0,0,1,0,0,0,0,1,0,#1.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.10,1,0,0,0,0,1,0,0,0,0,1,0,#1.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.11,1,0,0,0,0,1,0,0,0,0,1,0,#1.11.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.2,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.3,1,0,0,0,0,1,0,0,0,0,1,0,#2.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.4,1,0,0,0,0,1,0,0,0,0,1,0,#2.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.5,1,0,0,0,0,1,0,0,0,0,1,0,#2.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.6,1,0,0,0,0,1,0,0,0,0,1,0,#2.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.2,1,0,0,0,0,1,0,0,0,0,1,0,#3.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.3,1,0,0,0,0,1,0,0,0,0,1,0,#3.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.4,1,0,0,0,0,1,0,0,0,0,1,0,#3.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.5,1,0,0,0,0,1,0,0,0,0,1,0,#3.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.6,1,0,0,0,0,1,0,0,0,0,1,0,#3.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.10,1,0,0,0,0,1,0,0,0,0,1,0,#4.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.2,1,0,0,0,0,1,0,0,0,0,1,0,#4.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.3,1,0,0,0,0,1,0,0,0,0,1,0,#4.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.4,1,0,0,0,0,1,0,0,0,0,1,0,#4.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.5,1,0,0,0,0,1,0,0,0,0,1,0,#4.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.6,1,0,0,0,0,1,0,0,0,0,1,0,#4.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.7,1,0,0,0,0,1,0,0,0,0,1,0,#4.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.8,1,0,0,0,0,1,0,0,0,0,1,0,#4.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.9,1,0,0,0,0,1,0,0,0,0,1,0,#4.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,1,0,0,0,0,1,0,0,0,0,1,0,#5.10,1,0,0,0,0,1,0,0,0,0,1,0,#5.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.2,1,0,0,0,0,1,0,0,0,0,1,0,#5.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.3,1,0,0,0,0,1,0,0,0,0,1,0,#5.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.4,1,0,0,0,0,1,0,0,0,0,1,0,#5.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.5,1,0,0,0,0,1,0,0,0,0,1,0,#5.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.6,1,0,0,0,0,1,0,0,0,0,1,0,#5.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.7,1,0,0,0,0,1,0,0,0,0,1,0,#5.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.8,1,0,0,0,0,1,0,0,0,0,1,0,#5.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.9,1,0,0,0,0,1,0,0,0,0,1,0,#5.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,1,0,0,0,0,1,0,0,0,0,1,0,#6.10,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.3,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.4,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.5,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.6,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.7,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.8,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.9,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#10,1,0,0,0,0,1,0,0,0,0,1,0,#10.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.2,1,0,0,0,0,1,0,0,0,0,1,0,#10.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.3,1,0,0,0,0,1,0,0,0,0,1,0,#10.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#11,1,0,0,0,0,1,0,0,0,0,1,0,#11.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.2,1,0,0,0,0,1,0,0,0,0,1,0,#11.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.3,1,0,0,0,0,1,0,0,0,0,1,0,#11.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12,1,0,0,0,0,1,0,0,0,0,1,0,#12.10,1,0,0,0,0,1,0,0,0,0,1,0,#12.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.2,1,0,0,0,0,1,0,0,0,0,1,0,#12.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.3,1,0,0,0,0,1,0,0,0,0,1,0,#12.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.4,1,0,0,0,0,1,0,0,0,0,1,0,#12.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.5,1,0,0,0,0,1,0,0,0,0,1,0,#12.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.6,1,0,0,0,0,1,0,0,0,0,1,0,#12.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.7,1,0,0,0,0,1,0,0,0,0,1,0,#12.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.8,1,0,0,0,0,1,0,0,0,0,1,0,#12.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> volume #5.1 level 1.028

> volume #5.1 level 1

> hide #!5.1 models

> show #!4.1 models

> volume #4.1 level 0.5546

> volume #4.1 level 0.5

> hide #!1.12#!6.1 cartoons

> volume #4.1 level 0.55

> volume #4.1 level 0.6

> volume #4.1 level 0.7

> volume #4.1 level 0.6

> volume #4.1 level 0.5

> hide #!4.1 models

> show #!4.1 models

> hide #!4.1 models

> show #!5.1 models

> volume #5.1 level 0.6127

> volume #5.1 level 0.5

> volume #5.1 level 0.6

> volume #5.1 level 0.65

> volume #5.1 level 0.6

> volume #5.1 level 0.55

> volume #5.1 level 0.6

> view 76A_sandwich

Expected an objects specifier or a view name or a keyword  

> view name 76A_sandwich

> clip list

Using 2 clip planes:  
near offset 8.3312, axis 0.144,0.584,0.799, point 133.6,174.4,132.2)  
far offset 21.213, axis -0.144,-0.584,-0.799, point 135.4,181.9,142.5)  

> view 76A_sandwish

Expected an objects specifier or a view name or a keyword  

> view 76A_sandwich

> color #14.*/Y indigo

> color #14.*/Z blue

> color #22.*/Y indigo

> color #22.*/Z blue

> hide #!5.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> hide #!2.1 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.1 models

> show #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> hide #!2.1 models

> show #!2.2 models

> volume #2.2 level 0.55

> volume #2.2 level 0.02952

> volume #2.2 level 0.01523

> volume #2.2 level 0.015

> volume #2.3 level 0.015

> volume #2.4 level 0.015

> volume #2.5 level 0.01529

> volume #2.5 level 0.015

> volume #2.6 level 0.015

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> cartoon hide

> hide #!6.2 models

> show #!6.2 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!2.4 models

> hide #!2.2 models

> show #!6.2 models

> hide #!6.1 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> show #!1.12#!6.2 atoms

> show atoms

> hide #!2.1 models

> volume #2.4 level 0.01334

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #1.2:HOH

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD28254_8emm_x1.0067.mrc id
> 1.1 name 7k00_map

Opened 7k00_map as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0248, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb
> id 1.2 name 7k00

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb  
---  
warnings | PDB SEQRES record for chain B is incomplete. Ignoring input sequence records as basis for sequence.  
PDB SEQRES record for chain Y is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain Z is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 7k00 #7  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> hide #!1.2 models

> show #!1.2 models

> show #!1.1 models

> hide #!1.1 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.1 models

> show #!1.2 models

> style #!1.2,12#!6.2#!1.2.2 stick

Changed 442744 atom styles  

> volume #1.1 style surface

> volume #1.1 style mesh

> volume #1.1 style surface

> hide #!1.2 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> volume #1.1 style mesh

> hide #!2.4 models

> hide #!6.2 models

> hide #!1.1 models

> show #!1.1 models

> close #1.1

> close #1.2

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD28254_8emm_x1.0067.mrc id
> 1.1 name 7k00_map

Opened 7k00_map as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0248, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb
> id 1.2 name 7k00

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb  
---  
warnings | PDB SEQRES record for chain B is incomplete. Ignoring input sequence records as basis for sequence.  
PDB SEQRES record for chain Y is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain Z is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 7k00 #7  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> style #!1.2,12 sphere

Changed 283012 atom styles  

> style #!1.2,12 stick

Changed 283012 atom styles  

> close #1.1

> close #1.2

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/EMD28254_8emm_x1.0067.mrc id
> 1.1 name 8emm_map

Opened 8emm_map as #7, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0248, step 2, values float32  

> open /Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb
> id 1.2 name 8emm

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps/8emm_x1.0067_LSQ-23S.pdb  
---  
warnings | PDB SEQRES record for chain B is incomplete. Ignoring input sequence records as basis for sequence.  
PDB SEQRES record for chain Y is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain Z is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 8emm #7  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> style #!1.2,12 stick

Changed 283012 atom styles  

> volume #1.1 style mesh

> volume #1.1 step 1

> volume #1.1 level 0.02

> color #1.2 grey

> hide #1.2:HOH

> color #6.*/Y indigo

> color #6.*/Z blue

> color #14.*/Y indigo

> color #14.*/Z blue

> color #22.*/Y indigo

> color #22.*/Z blue

> color #1.2/Y indigo

> color #1.2/Z blue

> hide #1.2.1 models

> hide #1.1.1 models

> show #1.1.1 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.1 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> hide #!6 models

> show #!6 models

> hide #!1.12 models

> show #!1.12 models

> hide #1.12.2 models

> show #!1.1 models

> select add #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> select subtract #1.2

Nothing selected  

> show #!1.2 models

> view 76A_sandwich

> color #1.2/v khaki

> color #1.2/v peru

> color #1.2/v papaya whip

> color #1.2/v peach puff

> color #1.2/v moccasin

> color #1.2/v tan

> color #1.2/v sienna

> show #!2.1 models

> hide #!2.1 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.2 models

> hide #!4.2 models

> show #!5.1 models

> hide #!5.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.1 models

> hide #!6.1 models

> view 76A_sandwich

[Repeated 2 time(s)]

> ui mousemode right clip

> volume #1.1 level 0.05

> volume #1.1 level 0.015

> volume #1.1 level 0.01

> volume #1.1 level 0.012

> view name 76A_sandwich

> save /Users/dalar193/wd/deltaRibosomes/figure-AtRNA-sandwich.cxs includeMaps
> true

> graphics quality 6

> save /Users/dalar193/Desktop/image86.png supersample 3

> volume #1.1 color black

> save /Users/dalar193/Desktop/image87.png supersample 3

> volume #1.1 color #b2b2ff

> volume #1.1 color white

> volume #1.1 color #828282

> volume #1.1 color grey

> save /Users/dalar193/Desktop/image88.png supersample 3

> color #1.2 gray

> color #1.2/Y indigo

> color #1.2/Z blue

> color #1.2/v sienna

> color #1.1 gray

> save /Users/dalar193/Desktop/image89.png supersample 3

> volume color gray

> hide #!1.1 models

> hide #!1.2 models

> show #!4.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> hide #!4.1 models

> show #!1.1 models

> show #!1.2 models

> show #!5.1 models

> hide #!5.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> hide #!1.2 models

> hide #!1.1 models

> show #!4.1 models

> show #!6.1 models

> hide #!6.1 models

> hide #!4.1 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #8emm models

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show 8emm models

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show #!1.3 models

> hide #!1.3 models

> show #!10.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> graphics quality 6

> show #!5.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/image86.png supersample 3

> volume #1.3 level 0.6

> volume #1.3 level 0.5

> volume #1.3 level 0.4

> volume #1.3 color #1010d9

> volume #1.3 color #ff13c2

> volume #1.3 color #ff1317

> volume #1.8 level 0.2

> volume #1.8 level 0.05

> volume #1.8 level 0.1

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.6 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> volume #1.6 level 0.01

> show #!1.3 models

> hide #!1.6 models

> show #!1.6 models

> hide #!1.3 models

> hide #!1.6 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.3 models

> select add #1.3

2 models selected  

> select subtract #1.3

Nothing selected  

> select add #1.3

2 models selected  

> hide #!1.3 models

> show #!1.3 models

> select subtract #1.3

Nothing selected  

> select add #1.3

2 models selected  

> show #!1.6 models

> hide #!1.6 models

> show #!1.6 models

> hide #!1.6 models

> show #!1.6 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.6 models

> show #!1.8 models

> hide #!1.8 models

> show #!1.8 models

> volume #1.8 level 0.06

> volume #1.8 level 0.15

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> volume #1.8 level 0.18

> hide #!1.3 models

> show #!1.3 models

> volume #1.8 level 0.16

> hide #!1.3 models

> show #!1.3 models

> hide #!1.8 models

> show #!1.10 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> volume #1.10 level 0.025

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.10 models

> show #!1.1 models

> volume #1.1 level 0.01035

> volume #1.1 level 0

> volume #1.1 level 0.01

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> volume #1.1 level 0.015

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.1 models

> show #!2.1 models

> hide #!1.3 models

> volume #2.1 level 0.025

> volume #2.1 level 0.02

> volume #2.1 level 0.025

> volume #2.2 level 0.025

> volume #2.3 level 0.025

> volume #2.4 level 0.025

> show #!2.2 models

> show #!2.1 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.1 models

> show #!2.3 models

> hide #!2.2 models

> show #!2.4 models

> hide #!2.3 models

> show #!2.5 models

> hide #!2.4 models

> show #!2.6 models

> hide #!2.5 models

> volume #2.5 level 0.025

> volume #2.6 level 0.025

> hide #!2.6 models

> show #!3.1 models

> hide #!3.1 models

> show #!3.2 models

> hide #!3.2 models

> show #!3.1 models

> hide #!3.1 models

> show #!3.2 models

> volume #3.2 level 0.025

> volume #3.2 level 0.09

> volume #3.2 level 0.08

> hide #!3.2 models

> show #!3.2 models

> show #!2.2 models

> hide #!3.2 models

> show #!3.2 models

> hide #!3.2 models

> show #!3.2 models

> hide #!3.2 models

> show #!3.2 models

> hide #!2.2 models

> hide #!3.2 models

> show #!3.2 models

> hide #!3.2 models

> show #!4.1 models

> volume #4.1 level 0.7

> volume #4.1 level 0.8

> volume #4.1 level 0.6

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> volume #4.1 level 0.7

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> volume #4.1 level 0.8

> hide #!4.1 models

> show #!4.1 models

> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> volume #4.2 level 0.8

> hide #!4.2 models

> hide #!4.1 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.1 models

> show #!5.1 models

> volume #5.1 level 0.8

> hide #!4.1 models

> show #!4.1 models

> hide #!5.1 models

> show #!5.1 models

> volume #5.1 level 0.9

> hide #!5.1 models

> show #!5.1 models

> volume #5.1 level 0.95

> volume #5.1 level 1

> hide #!4.1 models

> show #!4.1 models

> hide #!5.1 models

> show #!5.1 models

> hide #!5.1 models

> show #!5.1 models

> volume #5.1 level 1.1

> hide #!4.1 models

> show #!4.1 models

> hide #!5.1 models

> show #!5.1 models

> hide #!5.1 models

> show #!5.1 models

> hide #!5.1 models

> show #!5.1 models

> hide #!4.1 models

> hide #!5.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!10.1 models

> hide #!10.1 models

> show #!10.1 models

> volume #10.1 level 0.025

> show #!11.1 models

> hide #!11.1 models

> show #!11.1 models

> hide #!11 models

> show #!11 models

> hide #!11.1 models

> hide #!10.1 models

> show #!13.1 models

> hide #!13.1 models

> show #!13.1 models

> volume #13.1 level 1.1

> hide #!13.1 models

> show #!12.1 models

> show #!20.1 models

> hide #!12.1 models

> hide #!20.1 models

> show #!20.1 models

> volume #20.1 level 0.4

> volume #20.1 level 0.5

> volume #20.1 level 0.4

> volume #20.1 level 0.25

> volume #20.1 level 0.3

> volume #20.1 level 0.35

> volume #20.1 level 0.3

> volume #20.3 level 0.3

> volume #20.2 level 0.3

> show #!21.2 models

> hide #!21.2 models

> show #!21.2 models

> volume #21.2 level 0.4

> volume #1.1 level 0.015000

> volume #1.3 level 0.400000

> volume #1.6 level 0.010000

> volume #1.8 level 0.160000

> volume #1.10 level 0.025000

> volume #2.2 level 0.025000

> volume #2.3 level 0.025000

> volume #2.4 level 0.025000

> volume #2.5 level 0.025000

> volume #2.6 level 0.025000

> volume #3.2 level 0.080000

> volume #3.3 level 0.080000

> volume #3.4 level 0.080000

> volume #3.5 level 0.080000

> volume #3.6 level 0.080000

> volume #4.10 level 0.800000

> volume #4.1 level 0.800000

> volume #4.2 level 0.800000

> volume #4.3 level 0.800000

> volume #4.4 level 0.800000

> volume #4.5 level 0.800000

> volume #4.6 level 0.800000

> volume #4.7 level 0.800000

> volume #4.8 level 0.800000

> volume #4.9 level 0.800000

> volume #5.10 level 1.100000

> volume #5.1 level 1.100000

> volume #5.2 level 1.100000

> volume #5.3 level 1.100000

> volume #5.4 level 1.100000

> volume #5.5 level 1.100000

> volume #5.6 level 1.100000

> volume #5.7 level 1.100000

> volume #5.8 level 1.100000

> volume #5.9 level 1.100000

> volume #10.1 level 0.025000

> volume #10.2 level 0.025000

> volume #10.3 level 0.025000

> volume #11.1 level 0.080000

> volume #11.2 level 0.080000

> volume #11.3 level 0.080000

> volume #12.10 level 0.800000

> volume #12.1 level 0.800000

> volume #12.2 level 0.800000

> volume #12.3 level 0.800000

> volume #12.4 level 0.800000

> volume #12.5 level 0.800000

> volume #12.6 level 0.800000

> volume #12.7 level 0.800000

> volume #12.8 level 0.800000

> volume #12.9 level 0.800000

> volume #13.10 level 1.100000

> volume #13.1 level 1.100000

> volume #13.2 level 1.100000

> volume #13.3 level 1.100000

> volume #13.4 level 1.100000

> volume #13.5 level 1.100000

> volume #13.6 level 1.100000

> volume #13.7 level 1.100000

> volume #13.8 level 1.100000

> volume #13.9 level 1.100000

> volume #20.1 level 0.300000

> volume #20.2 level 0.300000

> volume #20.3 level 0.300000

> volume #20.4 level 0.300000

> volume #21.1 level 0.400000

> volume #21.2 level 0.400000

> volume #21.3 level 0.400000

> volume #21.4 level 0.400000

> volume #1.1 level 0.015000

> volume #1.3 level 0.400000

> volume #1.6 level 0.010000

> volume #1.8 level 0.160000

> volume #1.10 level 0.025000

> volume #2.2 level 0.025000

> volume #2.3 level 0.025000

> volume #2.4 level 0.025000

> volume #2.5 level 0.025000

> volume #2.6 level 0.025000

> volume #3.2 level 0.080000

> volume #3.3 level 0.080000

> volume #3.4 level 0.080000

> volume #3.5 level 0.080000

> volume #3.6 level 0.080000

> volume #4.10 level 0.800000

> volume #4.1 level 0.800000

> volume #4.2 level 0.800000

> volume #4.3 level 0.800000

> volume #4.4 level 0.800000

> volume #4.5 level 0.800000

> volume #4.6 level 0.800000

> volume #4.7 level 0.800000

> volume #4.8 level 0.800000

> volume #4.9 level 0.800000

> volume #5.10 level 1.100000

> volume #5.1 level 1.100000

> volume #5.2 level 1.100000

> volume #5.3 level 1.100000

> volume #5.4 level 1.100000

> volume #5.5 level 1.100000

> volume #5.6 level 1.100000

> volume #5.7 level 1.100000

> volume #5.8 level 1.100000

> volume #5.9 level 1.100000

> volume #10.1 level 0.025000

> volume #10.2 level 0.025000

> volume #10.3 level 0.025000

> volume #11.1 level 0.080000

> volume #11.2 level 0.080000

> volume #11.3 level 0.080000

> volume #12.10 level 0.800000

> volume #12.1 level 0.800000

> volume #12.2 level 0.800000

> volume #12.3 level 0.800000

> volume #12.4 level 0.800000

> volume #12.5 level 0.800000

> volume #12.6 level 0.800000

> volume #12.7 level 0.800000

> volume #12.8 level 0.800000

> volume #12.9 level 0.800000

> volume #13.10 level 1.100000

> volume #13.1 level 1.100000

> volume #13.2 level 1.100000

> volume #13.3 level 1.100000

> volume #13.4 level 1.100000

> volume #13.5 level 1.100000

> volume #13.6 level 1.100000

> volume #13.7 level 1.100000

> volume #13.8 level 1.100000

> volume #13.9 level 1.100000

> volume #20.1 level 0.300000

> volume #20.2 level 0.300000

> volume #20.3 level 0.300000

> volume #20.4 level 0.300000

> volume #21.1 level 0.400000

> volume #21.2 level 0.400000

> volume #21.3 level 0.400000

> volume #21.4 level 0.400000

> graphics quality 6

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp/tmp_8emm_map_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!1.1 models

> hide #!1.2 models

> show #!1.3 models

> show #!1.5 models

> save /Users/dalar193/Desktop/tmp/tmp_8b0x_map_c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!1.3 models

> hide #!1.5 models

> show #!1.6 models

> show #!1.7 models

> save /Users/dalar193/Desktop/tmp/tmp_8cgk_map_c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!1.6 models

> hide #!1.7 models

> show #!1.8 models

> show #!1.9 models

> save /Users/dalar193/Desktop/tmp/tmp_7bv8_map_c9.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!1.8 models

> hide #!1.9 models

> show #!1.10 models

> show #!1.11 models

> save /Users/dalar193/Desktop/tmp/tmp_7o1a_map_c11.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!1.10 models

> hide #!1.11 models

> show #!2.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!2.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!2.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!2.3 models

> hide #!6.6 models

> show #!2.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!2.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!2.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!2.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!2.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!2.6 models

> hide #!6.10 models

> show #!3.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!3.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!3.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!3.3 models

> hide #!6.6 models

> show #!3.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!3.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!3.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!3.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!3.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!3.6 models

> hide #!6.10 models

> show #!4.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.10 models

> hide #!6.10 models

> show #!4.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.1 models

> hide #!6.1 models

> show #!4.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.2 models

> hide #!6.2 models

> show #!4.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.3 models

> hide #!6.3 models

> show #!4.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.4 models

> hide #!6.4 models

> show #!4.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.5 models

> hide #!6.5 models

> show #!4.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.6 models

> hide #!6.6 models

> show #!4.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.7 models

> hide #!6.7 models

> show #!4.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.8 models

> hide #!6.8 models

> show #!4.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!4.9 models

> hide #!6.9 models

> show #!5.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.10 models

> hide #!6.10 models

> show #!5.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.1 models

> hide #!6.1 models

> show #!5.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.2 models

> hide #!6.2 models

> show #!5.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.3 models

> hide #!6.3 models

> show #!5.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.4 models

> hide #!6.4 models

> show #!5.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.5 models

> hide #!6.5 models

> show #!5.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.6 models

> hide #!6.6 models

> show #!5.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.7 models

> hide #!6.7 models

> show #!5.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.8 models

> hide #!6.8 models

> show #!5.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!5.9 models

> hide #!6.9 models

> show #!10.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!10.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!10.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!10.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!11.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!11.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!11.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!11.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!12.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.10 models

> hide #!14.10 models

> show #!12.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.2 models

> hide #!14.2 models

> show #!12.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.5 models

> hide #!14.5 models

> show #!12.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.6 models

> hide #!14.6 models

> show #!12.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.7 models

> hide #!14.7 models

> show #!12.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!12.9 models

> hide #!14.9 models

> show #!13.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.10 models

> hide #!14.10 models

> show #!13.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.1 models

> hide #!14.1 models

> show #!13.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.2 models

> hide #!14.2 models

> show #!13.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.3 models

> hide #!14.3 models

> show #!13.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.4 models

> hide #!14.4 models

> show #!13.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.5 models

> hide #!14.5 models

> show #!13.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.6 models

> hide #!14.6 models

> show #!13.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.7 models

> hide #!14.7 models

> show #!13.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.8 models

> hide #!14.8 models

> show #!13.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!13.9 models

> hide #!14.9 models

> show #!20.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!20.1 models

> hide #!22.1 models

> show #!20.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!20.2 models

> hide #!22.2 models

> show #!20.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!20.3 models

> hide #!22.3 models

> show #!20.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!20.4 models

> hide #!22.4 models

> show #!21.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png supersample 3

Directory "/Users/dalar193/Desktop/tmp" does not exist  

> hide #!21.4 models

> hide #!22.4 models

> graphics quality 1

> volume #1.1 level 0.015000

> volume #1.3 level 0.400000

> volume #1.6 level 0.010000

> volume #1.8 level 0.160000

> volume #1.10 level 0.025000

> volume #2.2 level 0.025000

> volume #2.3 level 0.025000

> volume #2.4 level 0.025000

> volume #2.5 level 0.025000

> volume #2.6 level 0.025000

> volume #3.2 level 0.080000

> volume #3.3 level 0.080000

> volume #3.4 level 0.080000

> volume #3.5 level 0.080000

> volume #3.6 level 0.080000

> volume #4.10 level 0.800000

> volume #4.1 level 0.800000

> volume #4.2 level 0.800000

> volume #4.3 level 0.800000

> volume #4.4 level 0.800000

> volume #4.5 level 0.800000

> volume #4.6 level 0.800000

> volume #4.7 level 0.800000

> volume #4.8 level 0.800000

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> volume #21.3 level 0.400000

> volume #21.4 level 0.400000

> graphics quality 6

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp/tmp_8emm_map_c2.png supersample 3

> hide #!1.1 models

> hide #!1.2 models

> show #!1.3 models

> show #!1.5 models

> save /Users/dalar193/Desktop/tmp/tmp_8b0x_map_c5.png supersample 3

> hide #!1.3 models

> hide #!1.5 models

> show #!1.6 models

> show #!1.7 models

> save /Users/dalar193/Desktop/tmp/tmp_8cgk_map_c7.png supersample 3

> hide #!1.6 models

> hide #!1.7 models

> show #!1.8 models

> show #!1.9 models

> save /Users/dalar193/Desktop/tmp/tmp_7bv8_map_c9.png supersample 3

> hide #!1.8 models

> hide #!1.9 models

> show #!1.10 models

> show #!1.11 models

> save /Users/dalar193/Desktop/tmp/tmp_7o1a_map_c11.png supersample 3

> hide #!1.10 models

> hide #!1.11 models

> show #!2.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png supersample 3

> hide #!2.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!2.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png supersample 3

> hide #!2.3 models

> hide #!6.6 models

> show #!2.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png supersample 3

> hide #!2.4 models

> hide #!6.2 models

> hide #!6.1 models

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> show #!2.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png supersample 3

> hide #!2.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!2.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png supersample 3

> hide #!2.6 models

> hide #!6.10 models

> show #!3.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png supersample 3

> hide #!3.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!3.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png supersample 3

> hide #!3.3 models

> hide #!6.6 models

> show #!3.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png supersample 3

> hide #!3.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!3.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png supersample 3

> hide #!3.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!3.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png supersample 3

> hide #!3.6 models

> hide #!6.10 models

> show #!4.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png supersample 3

> hide #!4.10 models

> hide #!6.10 models

> show #!4.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png supersample 3

> hide #!4.1 models

> hide #!6.1 models

> show #!4.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png supersample 3

> hide #!4.2 models

> hide #!6.2 models

> show #!4.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png supersample 3

> hide #!4.3 models

> hide #!6.3 models

> show #!4.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png supersample 3

> hide #!4.4 models

> hide #!6.4 models

> show #!4.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png supersample 3

> hide #!4.5 models

> hide #!6.5 models

> show #!4.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png supersample 3

> hide #!4.6 models

> hide #!6.6 models

> show #!4.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png supersample 3

> hide #!4.7 models

> hide #!6.7 models

> show #!4.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png supersample 3

> hide #!4.8 models

> hide #!6.8 models

> show #!4.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png supersample 3

> hide #!4.9 models

> hide #!6.9 models

> show #!5.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png supersample 3

> hide #!5.10 models

> hide #!6.10 models

> show #!5.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png supersample 3

> hide #!5.1 models

> hide #!6.1 models

> show #!5.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png supersample 3

> hide #!5.2 models

> hide #!6.2 models

> show #!5.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png supersample 3

> hide #!5.3 models

> hide #!6.3 models

> show #!5.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png supersample 3

> hide #!5.4 models

> hide #!6.4 models

> show #!5.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png supersample 3

> hide #!5.5 models

> hide #!6.5 models

> show #!5.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png supersample 3

> hide #!5.6 models

> hide #!6.6 models

> show #!5.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png supersample 3

> hide #!5.7 models

> hide #!6.7 models

> show #!5.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png supersample 3

> hide #!5.8 models

> hide #!6.8 models

> show #!5.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png supersample 3

> hide #!5.9 models

> hide #!6.9 models

> show #!10.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png supersample 3

> hide #!10.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!10.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!10.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png supersample 3

> hide #!11.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!11.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png supersample 3

> hide #!11.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png supersample 3

> hide #!11.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!12.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png supersample 3

> hide #!12.10 models

> hide #!14.10 models

> show #!12.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png supersample 3

> hide #!12.2 models

> hide #!14.2 models

> show #!12.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png supersample 3

> hide #!12.5 models

> hide #!14.5 models

> show #!12.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png supersample 3

> hide #!12.6 models

> hide #!14.6 models

> show #!12.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png supersample 3

> hide #!12.7 models

> hide #!14.7 models

> show #!12.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!13.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png supersample 3

> hide #!13.10 models

> hide #!14.10 models

> show #!13.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png supersample 3

> hide #!13.1 models

> hide #!14.1 models

> show #!13.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png supersample 3

> hide #!13.2 models

> hide #!14.2 models

> show #!13.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png supersample 3

> hide #!13.3 models

> hide #!14.3 models

> show #!13.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png supersample 3

> hide #!13.4 models

> hide #!14.4 models

> show #!13.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png supersample 3

> hide #!13.5 models

> hide #!14.5 models

> show #!13.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png supersample 3

> hide #!13.6 models

> hide #!14.6 models

> show #!13.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png supersample 3

> hide #!13.7 models

> hide #!14.7 models

> show #!13.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png supersample 3

> hide #!13.8 models

> hide #!14.8 models

> show #!13.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png supersample 3

> hide #!13.9 models

> hide #!14.9 models

> show #!20.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png supersample 3

> hide #!20.1 models

> hide #!22.1 models

> show #!20.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png supersample 3

> hide #!20.2 models

> hide #!22.2 models

> show #!20.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png supersample 3

> hide #!20.3 models

> hide #!22.3 models

> show #!20.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png supersample 3

> hide #!20.4 models

> hide #!22.4 models

> show #!21.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png supersample 3

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png supersample 3

> hide #!21.4 models

> hide #!22.4 models

> graphics quality 1

> volume #1.1 level 0.007500

> volume #1.3 level 0.200000

> volume #1.6 level 0.005000

> volume #1.8 level 0.080000

> volume #1.10 level 0.012500

> volume #2.2 level 0.012500

> volume #2.3 level 0.012500

> volume #2.4 level 0.012500

> volume #2.5 level 0.012500

> volume #2.6 level 0.012500

> volume #3.2 level 0.040000

> volume #3.3 level 0.040000

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> volume #5.8 level 0.550000

> volume #5.9 level 0.550000

> volume #10.1 level 0.012500

> volume #10.2 level 0.012500

> volume #10.3 level 0.012500

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> volume #20.1 level 0.150000

> volume #20.2 level 0.150000

> volume #20.3 level 0.150000

> volume #20.4 level 0.150000

> volume #21.1 level 0.200000

> volume #21.2 level 0.200000

> volume #21.3 level 0.200000

> volume #21.4 level 0.200000

> graphics quality 6

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp/tmp_8emm_map_c2.png height 500 width 500
> supersample 3

> hide #!1.1 models

> hide #!1.2 models

> volume #1.1 level 0.010500

> volume #1.3 level 0.280000

> volume #1.6 level 0.007000

> volume #1.8 level 0.112000

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> volume #3.5 level 0.056000

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> volume #21.2 level 0.280000

> volume #21.3 level 0.280000

> volume #21.4 level 0.280000

> graphics quality 6

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp/tmp_8emm_map_c2.png height 600 width 600
> supersample 3

> hide #!1.1 models

> hide #!1.2 models

> show #!1.3 models

> show #!1.5 models

> save /Users/dalar193/Desktop/tmp/tmp_8b0x_map_c5.png height 600 width 600
> supersample 3

> hide #!1.3 models

> hide #!1.5 models

> show #!1.6 models

> show #!1.7 models

> save /Users/dalar193/Desktop/tmp/tmp_8cgk_map_c7.png height 600 width 600
> supersample 3

> hide #!1.6 models

> hide #!1.7 models

> show #!1.8 models

> show #!1.9 models

> save /Users/dalar193/Desktop/tmp/tmp_7bv8_map_c9.png height 600 width 600
> supersample 3

> hide #!1.8 models

> hide #!1.9 models

> show #!1.10 models

> show #!1.11 models

> save /Users/dalar193/Desktop/tmp/tmp_7o1a_map_c11.png height 600 width 600
> supersample 3

> hide #!1.10 models

> hide #!1.11 models

> show #!2.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png height 600 width 600
> supersample 3

> hide #!2.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!2.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png height 600 width 600
> supersample 3

> hide #!2.3 models

> hide #!6.6 models

> show #!2.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png height 600 width
> 600 supersample 3

> hide #!2.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!2.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png height 600 width 600
> supersample 3

> hide #!2.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!2.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png height 600 width 600
> supersample 3

> hide #!2.6 models

> hide #!6.10 models

> show #!3.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png height 600 width 600
> supersample 3

> hide #!3.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!3.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png height 600 width 600
> supersample 3

> hide #!3.3 models

> hide #!6.6 models

> show #!3.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png height 600 width
> 600 supersample 3

> hide #!3.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!3.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png height 600 width 600
> supersample 3

> hide #!3.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!3.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png height 600 width 600
> supersample 3

> hide #!3.6 models

> hide #!6.10 models

> show #!4.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png height 600 width 600
> supersample 3

> hide #!4.10 models

> hide #!6.10 models

> show #!4.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png height 600 width 600
> supersample 3

> hide #!4.1 models

> hide #!6.1 models

> show #!4.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png height 600 width 600
> supersample 3

> hide #!4.2 models

> hide #!6.2 models

> show #!4.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png height 600 width 600
> supersample 3

> hide #!4.3 models

> hide #!6.3 models

> show #!4.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png height 600 width 600
> supersample 3

> hide #!4.4 models

> hide #!6.4 models

> show #!4.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png height 600 width 600
> supersample 3

> hide #!4.5 models

> hide #!6.5 models

> show #!4.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png height 600 width 600
> supersample 3

> hide #!4.6 models

> hide #!6.6 models

> show #!4.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png height 600 width 600
> supersample 3

> hide #!4.7 models

> hide #!6.7 models

> show #!4.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png height 600 width 600
> supersample 3

> hide #!4.8 models

> hide #!6.8 models

> show #!4.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png height 600 width 600
> supersample 3

> hide #!4.9 models

> hide #!6.9 models

> show #!5.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png height 600 width 600
> supersample 3

> hide #!5.10 models

> hide #!6.10 models

> show #!5.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png height 600 width 600
> supersample 3

> hide #!5.1 models

> hide #!6.1 models

> show #!5.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png height 600 width 600
> supersample 3

> hide #!5.2 models

> hide #!6.2 models

> show #!5.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png height 600 width 600
> supersample 3

> hide #!5.3 models

> hide #!6.3 models

> show #!5.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png height 600 width 600
> supersample 3

> hide #!5.4 models

> hide #!6.4 models

> show #!5.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png height 600 width 600
> supersample 3

> hide #!5.5 models

> hide #!6.5 models

> show #!5.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png height 600 width 600
> supersample 3

> hide #!5.6 models

> hide #!6.6 models

> show #!5.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png height 600 width 600
> supersample 3

> hide #!5.7 models

> hide #!6.7 models

> show #!5.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png height 600 width 600
> supersample 3

> hide #!5.8 models

> hide #!6.8 models

> show #!5.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png height 600 width 600
> supersample 3

> hide #!5.9 models

> hide #!6.9 models

> show #!10.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png height 600 width
> 600 supersample 3

> hide #!10.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!10.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!10.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png height 600 width 600
> supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png height 600 width
> 600 supersample 3

> hide #!11.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!11.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png height 600 width
> 600 supersample 3

> hide #!11.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png height 600 width 600
> supersample 3

> hide #!11.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!12.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png height 600 width 600
> supersample 3

> hide #!12.10 models

> hide #!14.10 models

> show #!12.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png height 600 width 600
> supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png height 600 width 600
> supersample 3

> hide #!12.2 models

> hide #!14.2 models

> show #!12.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png height 600 width 600
> supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png height 600 width 600
> supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png height 600 width 600
> supersample 3

> hide #!12.5 models

> hide #!14.5 models

> show #!12.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png height 600 width 600
> supersample 3

> hide #!12.6 models

> hide #!14.6 models

> show #!12.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png height 600 width 600
> supersample 3

> hide #!12.7 models

> hide #!14.7 models

> show #!12.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png height 600 width 600
> supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png height 600 width 600
> supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!13.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png height 600 width 600
> supersample 3

> hide #!13.10 models

> hide #!14.10 models

> show #!13.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png height 600 width 600
> supersample 3

> hide #!13.1 models

> hide #!14.1 models

> show #!13.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png height 600 width 600
> supersample 3

> hide #!13.2 models

> hide #!14.2 models

> show #!13.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png height 600 width 600
> supersample 3

> hide #!13.3 models

> hide #!14.3 models

> show #!13.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png height 600 width 600
> supersample 3

> hide #!13.4 models

> hide #!14.4 models

> show #!13.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png height 600 width 600
> supersample 3

> hide #!13.5 models

> hide #!14.5 models

> show #!13.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png height 600 width 600
> supersample 3

> hide #!13.6 models

> hide #!14.6 models

> show #!13.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png height 600 width 600
> supersample 3

> hide #!13.7 models

> hide #!14.7 models

> show #!13.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png height 600 width 600
> supersample 3

> hide #!13.8 models

> hide #!14.8 models

> show #!13.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png height 600 width 600
> supersample 3

> hide #!13.9 models

> hide #!14.9 models

> show #!20.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png height 600 width 600
> supersample 3

> hide #!20.1 models

> hide #!22.1 models

> show #!20.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png height 600 width 600
> supersample 3

> hide #!20.2 models

> hide #!22.2 models

> show #!20.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png height 600 width 600
> supersample 3

> hide #!20.3 models

> hide #!22.3 models

> show #!20.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png height 600 width 600
> supersample 3

> hide #!20.4 models

> hide #!22.4 models

> show #!21.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png height 600 width 600
> supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png height 600 width 600
> supersample 3

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png height 600 width 600
> supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png height 600 width 600
> supersample 3

> hide #!21.4 models

> hide #!22.4 models

> graphics quality 1

> select subtract #1.3

Nothing selected  

> volume #1.1 level 0.009000

> volume #1.3 level 0.240000

> volume #1.6 level 0.006000

> volume #1.8 level 0.096000

> volume #1.10 level 0.015000

> volume #2.2 level 0.015000

> volume #2.3 level 0.015000

> volume #2.4 level 0.015000

> volume #2.5 level 0.015000

> volume #2.6 level 0.015000

> volume #3.2 level 0.048000

> volume #3.3 level 0.048000

> volume #3.4 level 0.048000

> volume #3.5 level 0.048000

> volume #3.6 level 0.048000

> volume #4.10 level 0.480000

> volume #4.1 level 0.480000

> volume #4.2 level 0.480000

> volume #4.3 level 0.480000

> volume #4.4 level 0.480000

> volume #4.5 level 0.480000

> volume #4.6 level 0.480000

> volume #4.7 level 0.480000

> volume #4.8 level 0.480000

> volume #4.9 level 0.480000

> volume #5.10 level 0.660000

> volume #5.1 level 0.660000

> volume #5.2 level 0.660000

> volume #5.3 level 0.660000

> volume #5.4 level 0.660000

> volume #5.5 level 0.660000

> volume #5.6 level 0.660000

> volume #5.7 level 0.660000

> volume #5.8 level 0.660000

> volume #5.9 level 0.660000

> volume #10.1 level 0.015000

> volume #10.2 level 0.015000

> volume #10.3 level 0.015000

> volume #11.1 level 0.048000

> volume #11.2 level 0.048000

> volume #11.3 level 0.048000

> volume #12.10 level 0.480000

> volume #12.1 level 0.480000

> volume #12.2 level 0.480000

> volume #12.3 level 0.480000

> volume #12.4 level 0.480000

> volume #12.5 level 0.480000

> volume #12.6 level 0.480000

> volume #12.7 level 0.480000

> volume #12.8 level 0.480000

> volume #12.9 level 0.480000

> volume #13.10 level 0.660000

> volume #13.1 level 0.660000

> volume #13.2 level 0.660000

> volume #13.3 level 0.660000

> volume #13.4 level 0.660000

> volume #13.5 level 0.660000

> volume #13.6 level 0.660000

> volume #13.7 level 0.660000

> volume #13.8 level 0.660000

> volume #13.9 level 0.660000

> volume #20.1 level 0.180000

> volume #20.2 level 0.180000

> volume #20.3 level 0.180000

> volume #20.4 level 0.180000

> volume #21.1 level 0.240000

> volume #21.2 level 0.240000

> volume #21.3 level 0.240000

> volume #21.4 level 0.240000

> graphics quality 6

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp/tmp_8emm_map_c2.png height 600 width 600
> supersample 3

> hide #!1.1 models

> hide #!1.2 models

> show #!1.3 models

> show #!1.5 models

> save /Users/dalar193/Desktop/tmp/tmp_8b0x_map_c5.png height 600 width 600
> supersample 3

> hide #!1.3 models

> hide #!1.5 models

> show #!1.6 models

> show #!1.7 models

> save /Users/dalar193/Desktop/tmp/tmp_8cgk_map_c7.png height 600 width 600
> supersample 3

> hide #!1.6 models

> hide #!1.7 models

> show #!1.8 models

> show #!1.9 models

> save /Users/dalar193/Desktop/tmp/tmp_7bv8_map_c9.png height 600 width 600
> supersample 3

> hide #!1.8 models

> hide #!1.9 models

> show #!1.10 models

> show #!1.11 models

> save /Users/dalar193/Desktop/tmp/tmp_7o1a_map_c11.png height 600 width 600
> supersample 3

> hide #!1.10 models

> hide #!1.11 models

> show #!2.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_c1c2c4.png height 600 width 600
> supersample 3

> hide #!2.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!2.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_c6.png height 600 width 600
> supersample 3

> hide #!2.3 models

> hide #!6.6 models

> show #!2.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_c2c1c9c7.png height 600 width
> 600 supersample 3

> hide #!2.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!2.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_c8c6c3.png height 600 width 600
> supersample 3

> hide #!2.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!2.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_c0.png height 600 width 600
> supersample 3

> hide #!2.6 models

> hide #!6.10 models

> show #!3.2 models

> show #!6.1 models

> show #!6.2 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape1_sharp_c1c2c4.png height 600
> width 600 supersample 3

> hide #!3.2 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.4 models

> show #!3.3 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape2_sharp_c6.png height 600 width
> 600 supersample 3

> hide #!3.3 models

> hide #!6.6 models

> show #!3.4 models

> show #!6.2 models

> show #!6.1 models

> show #!6.9 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_ape3_sharp_c2c1c9c7.png height 600
> width 600 supersample 3

> hide #!3.4 models

> hide #!6.2 models

> hide #!6.1 models

> hide #!6.9 models

> hide #!6.7 models

> show #!3.5 models

> show #!6.8 models

> show #!6.6 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_pe_sharp_c8c6c3.png height 600 width
> 600 supersample 3

> hide #!3.5 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.3 models

> show #!3.6 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_e_sharp_c0.png height 600 width 600
> supersample 3

> hide #!3.6 models

> hide #!6.10 models

> show #!4.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_c0.png height 600 width 600
> supersample 3

> hide #!4.10 models

> hide #!6.10 models

> show #!4.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_c1.png height 600 width 600
> supersample 3

> hide #!4.1 models

> hide #!6.1 models

> show #!4.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_c2.png height 600 width 600
> supersample 3

> hide #!4.2 models

> hide #!6.2 models

> show #!4.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_c3.png height 600 width 600
> supersample 3

> hide #!4.3 models

> hide #!6.3 models

> show #!4.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_c4.png height 600 width 600
> supersample 3

> hide #!4.4 models

> hide #!6.4 models

> show #!4.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_c5.png height 600 width 600
> supersample 3

> hide #!4.5 models

> hide #!6.5 models

> show #!4.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_c6.png height 600 width 600
> supersample 3

> hide #!4.6 models

> hide #!6.6 models

> show #!4.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_c7.png height 600 width 600
> supersample 3

> hide #!4.7 models

> hide #!6.7 models

> show #!4.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_c8.png height 600 width 600
> supersample 3

> hide #!4.8 models

> hide #!6.8 models

> show #!4.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_c9.png height 600 width 600
> supersample 3

> hide #!4.9 models

> hide #!6.9 models

> show #!5.10 models

> show #!6.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J83_cl0_sharp_c0.png height 600
> width 600 supersample 3

> hide #!5.10 models

> hide #!6.10 models

> show #!5.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J84_cl1_sharp_c1.png height 600
> width 600 supersample 3

> hide #!5.1 models

> hide #!6.1 models

> show #!5.2 models

> show #!6.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J85_cl2_sharp_c2.png height 600
> width 600 supersample 3

> hide #!5.2 models

> hide #!6.2 models

> show #!5.3 models

> show #!6.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J86_cl3_sharp_c3.png height 600
> width 600 supersample 3

> hide #!5.3 models

> hide #!6.3 models

> show #!5.4 models

> show #!6.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J87_cl4_sharp_c4.png height 600
> width 600 supersample 3

> hide #!5.4 models

> hide #!6.4 models

> show #!5.5 models

> show #!6.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J88_cl5_sharp_c5.png height 600
> width 600 supersample 3

> hide #!5.5 models

> hide #!6.5 models

> show #!5.6 models

> show #!6.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J89_cl6_sharp_c6.png height 600
> width 600 supersample 3

> hide #!5.6 models

> hide #!6.6 models

> show #!5.7 models

> show #!6.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J90_cl7_sharp_c7.png height 600
> width 600 supersample 3

> hide #!5.7 models

> hide #!6.7 models

> show #!5.8 models

> show #!6.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J91_cl8_sharp_c8.png height 600
> width 600 supersample 3

> hide #!5.8 models

> hide #!6.8 models

> show #!5.9 models

> show #!6.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d9_J92_cl9_sharp_c9.png height 600
> width 600 supersample 3

> hide #!5.9 models

> hide #!6.9 models

> show #!10.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_c9c3c2c5c1.png height 600 width
> 600 supersample 3

> hide #!10.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!10.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_c6c7c8c1c5.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!10.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_c0c1c5.png height 600 width 600
> supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.1 models

> show #!14.9 models

> show #!14.3 models

> show #!14.2 models

> show #!14.5 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_ape_sharp_c9c3c2c5c1.png height 600
> width 600 supersample 3

> hide #!11.1 models

> hide #!14.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.5 models

> hide #!14.1 models

> show #!11.2 models

> show #!14.6 models

> show #!14.7 models

> show #!14.8 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_pe_sharp_c6c7c8c1c5.png height 600
> width 600 supersample 3

> hide #!11.2 models

> hide #!14.6 models

> hide #!14.7 models

> hide #!14.8 models

> hide #!14.1 models

> hide #!14.5 models

> show #!11.3 models

> show #!14.10 models

> show #!14.1 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_e_sharp_c0c1c5.png height 600 width
> 600 supersample 3

> hide #!11.3 models

> hide #!14.10 models

> hide #!14.1 models

> hide #!14.5 models

> show #!12.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_c0.png height 600 width 600
> supersample 3

> hide #!12.10 models

> hide #!14.10 models

> show #!12.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_c1.png height 600 width 600
> supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_c2.png height 600 width 600
> supersample 3

> hide #!12.2 models

> hide #!14.2 models

> show #!12.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_c3.png height 600 width 600
> supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_c4.png height 600 width 600
> supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_c5.png height 600 width 600
> supersample 3

> hide #!12.5 models

> hide #!14.5 models

> show #!12.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_c6.png height 600 width 600
> supersample 3

> hide #!12.6 models

> hide #!14.6 models

> show #!12.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_c7.png height 600 width 600
> supersample 3

> hide #!12.7 models

> hide #!14.7 models

> show #!12.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_c8.png height 600 width 600
> supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_c9.png height 600 width 600
> supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!13.10 models

> show #!14.10 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J53_c0_sharp_c0.png height 600
> width 600 supersample 3

> hide #!13.10 models

> hide #!14.10 models

> show #!13.1 models

> show #!14.1 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J54_c1_sharp_c1.png height 600
> width 600 supersample 3

> hide #!13.1 models

> hide #!14.1 models

> show #!13.2 models

> show #!14.2 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J55_c2_sharp_c2.png height 600
> width 600 supersample 3

> hide #!13.2 models

> hide #!14.2 models

> show #!13.3 models

> show #!14.3 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J56_c3_sharp_c3.png height 600
> width 600 supersample 3

> hide #!13.3 models

> hide #!14.3 models

> show #!13.4 models

> show #!14.4 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J57_c4_sharp_c4.png height 600
> width 600 supersample 3

> hide #!13.4 models

> hide #!14.4 models

> show #!13.5 models

> show #!14.5 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J58_c5_sharp_c5.png height 600
> width 600 supersample 3

> hide #!13.5 models

> hide #!14.5 models

> show #!13.6 models

> show #!14.6 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J59_c6_sharp_c6.png height 600
> width 600 supersample 3

> hide #!13.6 models

> hide #!14.6 models

> show #!13.7 models

> show #!14.7 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J60_c7_sharp_c7.png height 600
> width 600 supersample 3

> hide #!13.7 models

> hide #!14.7 models

> show #!13.8 models

> show #!14.8 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J61_c8_sharp_c8.png height 600
> width 600 supersample 3

> hide #!13.8 models

> hide #!14.8 models

> show #!13.9 models

> show #!14.9 models

> save /Users/dalar193/Desktop/tmp/tmp_d10_J62_c9_sharp_c9.png height 600
> width 600 supersample 3

> hide #!13.9 models

> hide #!14.9 models

> show #!20.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1.png height 600 width 600
> supersample 3

> hide #!20.1 models

> hide #!22.1 models

> show #!20.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2.png height 600 width 600
> supersample 3

> hide #!20.2 models

> hide #!22.2 models

> show #!20.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png height 600 width 600
> supersample 3

> hide #!20.3 models

> hide #!22.3 models

> show #!20.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png height 600 width 600
> supersample 3

> hide #!20.4 models

> hide #!22.4 models

> show #!21.1 models

> show #!22.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_sharp_c1.png height 600
> width 600 supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> show #!22.2 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_sharp_c2.png height 600
> width 600 supersample 3

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_sharp_c3.png height 600
> width 600 supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_sharp_c4.png height 600 width
> 600 supersample 3

> hide #!21.4 models

> hide #!22.4 models

> graphics quality 1

> graphics quality 6

> show #!20.1 models

> show #!22.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_c1c1.png height 600 width
> 600 supersample 3

> hide #!20.1 models

> hide #!22.1 models

> hide #!6.1 models

> show #!20.2 models

> show #!22.2 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_c2c1.png height 600 width
> 600 supersample 3

> hide #!20.2 models

> hide #!22.2 models

> hide #!6.1 models

> show #!20.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_c3.png height 600 width 600
> supersample 3

> hide #!20.3 models

> hide #!22.3 models

> show #!20.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_c4.png height 600 width 600
> supersample 3

> hide #!20.4 models

> hide #!22.4 models

> show #!21.1 models

> show #!22.1 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J111_ape_sharp_c1c1.png height 600
> width 600 supersample 3

> hide #!21.1 models

> hide #!22.1 models

> hide #!6.1 models

> show #!21.2 models

> show #!22.2 models

> show #!6.1 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J112_ap_sharp_c2c1.png height 600
> width 600 supersample 3

> hide #!21.2 models

> hide #!22.2 models

> hide #!6.1 models

> show #!21.3 models

> show #!22.3 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J113_pe_sharp_c3.png height 600
> width 600 supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> show #!22.4 models

> save /Users/dalar193/Desktop/tmp/tmp_dE_J124_e_sharp_c4.png height 600 width
> 600 supersample 3

> hide #!21.4 models

> hide #!22.4 models

> hide #!2 models

> show #!2 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> volume surfaceSmoothing

Missing "surfaceSmoothing" keyword's argument  

> volume style surface

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> preset cartoons/nucleotides licorice/ovals

Using preset: Cartoons/Nucleotides / Licorice/Ovals  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    cartoon style protein modeh default arrows f x round width 1 thick 1
    cartoon style nucleic x round width 1.6 thick 1.6
    nucleotides tube/slab shape ellipsoid

  

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> show #!1.12 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> style stick

Changed 999974 atom styles  

> show #!1.10 models

> hide #!1.10 models

> hide #!1.12 models

> show #!1.11 models

> hide #!1.11 models

> show #!1.11 models

> hide #!1.11 models

> show #!1.12 models

> show #!1.11 models

> style stick

Changed 999974 atom styles  

> nucleotides fill

> nucleotides stick

Missing or invalid "representation" argument: Should be one of 'atoms',
'fill', 'ladder', 'slab', 'stubs', or 'tube/slab'  

> nucleotides atoms

> nucleotides fill

> nucleotides atoms

> cartoon ribbon

Expected an atoms specifier or a keyword  

> cartoon style ribbon

Expected an atoms specifier or a keyword  

> style ribbon

Expected a keyword  

> preset ribbon

Using preset: Cartoons/Nucleotides / Ribbons/Slabs  
Changed 0 atom styles  
Preset expands to these ChimeraX commands:

    
    
    show nucleic
    hide protein|solvent|H
    surf hide
    style (protein|nucleic|solvent) & @@draw_mode=0 stick
    cartoon
    cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20
    cartoon style ~(nucleic|strand) x round
    cartoon style (nucleic|strand) x rect
    nucleotides tube/slab shape box

  

> view 76A_sandwich

> savepos list

Unknown command: savepos list  

> hide #!1.11 models

> hide #!1.12 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.2 models

> show #!2.1 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.1 models

> show #!2.4 models

> hide #!2.2 models

> volume style mesh

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!1.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.1 models

> show #!1.2 models

> hide #!1.2 models

> hide #!2.4 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.4 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> nucleotides #!6.2 fill

> style nucleic & #!6.2 stick

Changed 9184 atom styles  

> style nuc stick

Expected a keyword  

> style nucleic stick

Changed 719706 atom styles  

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> style nucleic stick

Changed 719706 atom styles  

> style nucleic fill

Expected a keyword  

> style nucleic stick

Changed 719706 atom styles  

> nucleotides #!1.2#!6.2 atoms

> style nucleic & #!1.2#!6.2 stick

Changed 107043 atom styles  

> nucleotides atoms

> nucleotides fill

> hide #!1.2 models

> hide #!2.4 models

> show #!2.4 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.6 models

> show #!6.5 models

> view #6.1/a:2439

> show #!1.2 models

> show #!1.1 models

> hide #!1.1 models

> hide #!1.2 models

> show #!1.1 models

> show #!1.2 models

> hide #!1.1 models

> hide #!1.2 models

> hide #!6.6 models

> hide #!6.5 models

> hide #!6.2 models

> show #!6.2 models

> hide #!2.4 models

> show #!2.4 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.1 models

> hide #!4.1 models

> hide #!2.4 models

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> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

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> hide #!6.3 models

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> show #!6.4 models

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> hide #!6.7 models

> hide #!6.8 models

> hide #!6.9 models

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> show #!1.5 models

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> hide #!14.1 models

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> hide #!14.1 models

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> hide #!14.2 models

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> hide #!14.6 models

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> hide #!14.8 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.10 models

> view #6.1/a:2059

> hide #!6.10 models

> hide #!6.4 models

> hide #!1.5 models

> hide #!1.2 models

> hide #!14.10 models

> show #!1.2 models

> color #1.2/a:2059-2062 light pink

> color #1.2/a:2447-2453 coral

> color #1.2/a:2499-2507 chartreuse

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> color #1.2/a:2058-2062 deep pink

> color #1.2/a:2058-2062 pale violet red

> color #1.2/a:2580-2587 pale turquoise

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> color #1.2/a:2580-2587 aquamarine

> color #1.2/a:2499-2507 green yellow

> color #1.2/a:2607-2610 steel blue

> color #1.2/e:55-73 dark green

> save /Users/dalar193/Desktop/image86.png supersample 3

> view name del9_overview

> view name del9_PTC_overview

> show #!6.1 models

> hide #!6.1 models

> color #6.* grey

> color #6.*/Y indigo

> color #6.*/Z blue

> color #6.*/v sienna

> color #6.*/a:2058-2062 pale violet red

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> color #6.*/a:2499-2507 green yellow

> color #6.*/a:2580-2587 aquamarine

> color #6.*/a:2607-2610 steel blue

> color #6.*/e:55-73 dark green

> hide #!1.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> show #!1.12 models

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> hide #!6.1 models

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> hide #!6.2 models

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> hide #!6.5 models

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> hide #!6.6 models

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> show #!6.9 models

> hide #!6.8 models

> show #!6.10 models

> hide #!6.9 models

> show #!1.2 models

> hide #!6.10 models

> view del9_PTC_overview

> view name del9_PTC_overview

> cartoon suppressBackboneDisplay true

> cartoon suppressBackboneDisplay false

> cartoon suppressBackboneDisplay true

> save /Users/dalar193/Desktop/image87.png supersample 3

> hide #!1.2 models

> show #!1.2 models

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> show #!1.1 models

> hide #!1.1 models

> show #!1.2 models

> hide #!1.12 models

> show #!1.12 models

> hide #!1.12 models

> save /Users/dalar193/Desktop/image88.png supersample 3

> hide #!1.2 models

> show #!1.12 models

> show #!6.1 models

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> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

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> hide #!6.1 models

> show #!6.3 models

> hide #!6.2 models

> show #!6.4 models

> hide #!6.3 models

> view del9_PTC_overview

> show #!6.5 models

> hide #!6.4 models

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> hide #!6.5 models

> show #!6.7 models

> hide #!6.6 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> hide #!1.12 models

> show #!1.2 models

> viewport 600, 600

Unknown command: viewport 600, 600  

> viewport 600 600

Unknown command: viewport 600 600  

> windowsize 600 600

> view name del9_PTC_overview

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> graphics quality 6

> show #!1.2 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8emm.png height
> 600 width 600 supersample 3

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> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8b0x.png height
> 600 width 600 supersample 3

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> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8cgk.png height
> 600 width 600 supersample 3

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> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7bv8.png height
> 600 width 600 supersample 3

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> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

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> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

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> show #!6.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

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> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

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> show #!6.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

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> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

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> show #!6.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

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> show #!6.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

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> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

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> show #!6.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

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> show #!6.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!1.12 models

> show #!14.10 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!1.12 models

> show #!14.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

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> show #!14.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!1.12 models

> show #!14.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

> hide #!1.12 models

> show #!14.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!1.12 models

> show #!14.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

> hide #!1.12 models

> show #!14.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

> hide #!1.12 models

> show #!14.7 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J60_c7.png
> height 600 width 600 supersample 3

> hide #!14.7 models

> hide #!1.12 models

> show #!14.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J61_c8.png
> height 600 width 600 supersample 3

> hide #!14.8 models

> hide #!1.12 models

> show #!14.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J62_c9.png
> height 600 width 600 supersample 3

> hide #!14.9 models

> hide #!1.12 models

> show #!22.1 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> show #!22.2 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J112_ap.png
> height 600 width 600 supersample 3

> hide #!22.2 models

> show #!22.3 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J113_pe.png
> height 600 width 600 supersample 3

> hide #!22.3 models

> show #!22.4 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J124_e.png
> height 600 width 600 supersample 3

> hide #!22.4 models

> graphics quality 1

> color #6.* grey

> color #6.*/Y indigo

> color #6.*/Z blue

> color #6.*/v sienna

> color #6.*/a:2058-2062 pale violet red

> color #6.*/a:2447-2453 coral

> color #6.*/a:2499-2507 green yellow

> color #6.*/a:2580-2587 aquamarine

> color #6.*/a:2607-2610 steel blue

> color #6.*/e:55-73 dark green

> color #14.* grey

> color #14.*/Y indigo

> color #14.*/Z blue

> color #14.*/v sienna

> color #14.*/a:2058-2062 pale violet red

> color #14.*/a:2447-2453 coral

> color #14.*/a:2499-2507 green yellow

> color #14.*/a:2580-2587 aquamarine

> color #14.*/a:2607-2610 steel blue

> color #14.*/e:55-73 dark green

> color #22.* grey

> color #22.*/Y indigo

> color #22.*/Z blue

> color #22.*/v sienna

> color #22.*/a:2058-2062 pale violet red

> color #22.*/a:2447-2453 coral

> color #22.*/a:2499-2507 green yellow

> color #22.*/a:2580-2587 aquamarine

> color #22.*/a:2607-2610 steel blue

> color #22.*/e:55-73 dark green

> graphics quality 6

> show #!1.2 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> show #!1.5 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8b0x.png height
> 600 width 600 supersample 3

> hide #!1.5 models

> show #!1.7 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> show #!1.9 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> show #!1.11 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> show #!6.10 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

> hide #!1.12 models

> show #!6.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

> hide #!1.12 models

> show #!6.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

> hide #!1.12 models

> show #!6.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

> hide #!1.12 models

> show #!6.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

> hide #!1.12 models

> show #!6.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

> hide #!1.12 models

> show #!6.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

> hide #!1.12 models

> show #!6.7 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

> hide #!1.12 models

> show #!6.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

> hide #!1.12 models

> show #!6.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!1.12 models

> show #!14.10 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!1.12 models

> show #!14.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

> hide #!1.12 models

> show #!14.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!1.12 models

> show #!14.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

> hide #!1.12 models

> show #!14.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!1.12 models

> show #!14.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

> hide #!1.12 models

> show #!14.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

> hide #!1.12 models

> show #!14.7 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J60_c7.png
> height 600 width 600 supersample 3

> hide #!14.7 models

> hide #!1.12 models

> show #!14.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J61_c8.png
> height 600 width 600 supersample 3

> hide #!14.8 models

> hide #!1.12 models

> show #!14.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J62_c9.png
> height 600 width 600 supersample 3

> hide #!14.9 models

> hide #!1.12 models

> show #!22.1 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> show #!22.2 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J112_ap.png
> height 600 width 600 supersample 3

> hide #!22.2 models

> show #!22.3 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J113_pe.png
> height 600 width 600 supersample 3

> hide #!22.3 models

> show #!22.4 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J124_e.png
> height 600 width 600 supersample 3

> hide #!22.4 models

> graphics quality 1

> windowsize 600 600

> graphics quality 6

> show #!1.2 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> show #!1.5 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8b0x.png height
> 600 width 600 supersample 3

> hide #!1.5 models

> show #!1.7 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> show #!1.9 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> show #!1.11 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> show #!6.10 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

> hide #!1.12 models

> show #!6.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

> hide #!1.12 models

> show #!6.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

> hide #!1.12 models

> show #!6.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

> hide #!1.12 models

> show #!6.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

> hide #!1.12 models

> show #!6.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

> hide #!1.12 models

> show #!6.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

> hide #!1.12 models

> show #!6.7 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

> hide #!1.12 models

> show #!6.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

> hide #!1.12 models

> show #!6.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!1.12 models

> show #!14.10 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!1.12 models

> show #!14.1 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

> hide #!1.12 models

> show #!14.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!1.12 models

> show #!14.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

> hide #!1.12 models

> show #!14.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!1.12 models

> show #!14.5 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

> hide #!1.12 models

> show #!14.6 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

> hide #!1.12 models

> show #!14.7 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J60_c7.png
> height 600 width 600 supersample 3

> hide #!14.7 models

> hide #!1.12 models

> show #!14.8 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J61_c8.png
> height 600 width 600 supersample 3

> hide #!14.8 models

> hide #!1.12 models

> show #!14.9 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d10_J62_c9.png
> height 600 width 600 supersample 3

> hide #!14.9 models

> hide #!1.12 models

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> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> hide #!1.12 models

> show #!22.2 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J112_ap.png
> height 600 width 600 supersample 3

> hide #!22.2 models

> hide #!1.12 models

> show #!22.3 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J113_pe.png
> height 600 width 600 supersample 3

> hide #!22.3 models

> hide #!1.12 models

> show #!22.4 models

> show #!1.12 models

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_dE_J124_e.png
> height 600 width 600 supersample 3

> hide #!22.4 models

> hide #!1.12 models

> graphics quality 1

> show #!1.1 models

> volume style surface

> windowsize 600 400

> windowsize 1200 1200

> save /Users/dalar193/Desktop/image89.png supersample 3

> windowsize 600 600

> save /Users/dalar193/Desktop/image90.png supersample 3

> view orient

> windowsize 600 600

> save /Users/dalar193/Desktop/image91.png supersample 3

> windowsize 600 400

> view name ssu_rotation

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> hide #!1.1 models

> show #!2.1 models

> hide #!2.1 models

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> hide #!2.2 models

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> hide #!2.3 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!1.1 models

> color #1.1 #800002ff models

> show #!2.1 models

> hide #!2.1 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.6 models

> hide #!2.6 models

> volume #1.1 level 0.006000

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> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> show #!2.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!2.2 models

> hide #!2.1 models

> show #!2.3 models

> hide #!2.2 models

> show #!2.4 models

> hide #!2.3 models

> show #!2.1 models

> hide #!2.4 models

> show #!2.4 models

> hide #!2.1 models

> show #!2.5 models

> hide #!2.4 models

> show #!2.6 models

> hide #!2.5 models

> show #!1.1 models

> hide #!1.1 models

> hide #!2.6 models

> show #!3.1 models

> hide #!3.1 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.2 models

> hide #!4.2 models

> color #1.1 gray

> color #1.3 sea green

> color #1.6 sea green

> color #1.8 sea green

> color #1.10 sea green

> color #2.2 sea green

> color #2.3 sea green

> color #2.4 sea green

> color #2.5 sea green

> color #2.6 sea green

> color #4.10 sea green

> color #4.1 sea green

> color #4.2 sea green

> color #4.3 sea green

> color #4.4 sea green

> color #4.5 sea green

> color #4.6 sea green

> color #4.7 sea green

> color #4.8 sea green

> color #4.9 sea green

> color #10.1 sea green

> color #10.2 sea green

> color #10.3 sea green

> color #12.1 sea green

[Repeated 1 time(s)]

> color #12.2 sea green

> color #12.3 sea green

> color #12.4 sea green

> color #12.5 sea green

> color #12.6 sea green

> color #12.7 sea green

> color #12.8 sea green

> color #12.9 sea green

> color #20.1 sea green

> color #20.2 sea green

> color #20.3 sea green

> color #20.4 sea green

> show #!1.1 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

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> hide #!2.6 models

> hide #!1.1 models

> show #!1.3 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

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> hide #!1.3 models

> hide #!1.6 models

> show #!1.6 models

> hide #!1.6 models

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> hide #!1.8 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.10 models

> color #1.10 gray

> show #!2.1 models

> hide #!2.1 models

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> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.6 models

> show #!2.2 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> hide #!2.2 models

> show #!11.1 models

> hide #!11.1 models

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> hide #!10.1 models

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> hide #!10.2 models

> show #!10.2 models

> hide #!10.2 models

> show #!10.2 models

> hide #!10.2 models

> show #!10.3 models

> hide #!10.3 models

> show #!10.3 models

> hide #!10.3 models

> show #!10.3 models

> hide #!10.3 models

> show #!10.1 models

> hide #!10.1 models

> show #!10.1 models

> hide #!10.1 models

> show #!10.1 models

> hide #!10.1 models

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> hide #!1.2 models

> show #!1.1 models

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> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

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> hide #!2.3 models

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> hide #!2.4 models

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> hide #!2.5 models

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> hide #!2.5 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!4.1 models

> hide #!4.1 models

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> hide #!4.2 models

> show #!4.3 models

> hide #!4.3 models

> show #!10.1 models

> hide #!10.1 models

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> hide #!10.2 models

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> hide #!10.3 models

> show #!10.3 models

> hide #!10.3 models

> show #!10.3 models

> show #!20.1 models

> hide #!10.3 models

> hide #!20.1 models

> show #!20.1 models

> hide #!20.1 models

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> hide #!20.2 models

> show #!20.2 models

> hide #!20.2 models

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> hide #!20.3 models

> show #!20.3 models

> hide #!20.3 models

> show #!20.4 models

> hide #!20.4 models

> volume #20.1 level 0.150000

> volume #20.2 level 0.150000

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> hide #!20.1 models

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> volume #1.1 level 0.008

> hide #!1.1 models

> show #!1.1 models

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> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.6 models

> hide #!1.6 models

> show #!1.8 models

> hide #!1.8 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> volume #1.3 level 0.180000

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> hide #!1.3 models

> show #!1.3 models

> volume #1.3 level 0.190000

> color #1.6 #8b8b8bff models

> hide #!1.3 models

> show #!1.8 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.8 models

> color #1.8 #8b8b8bff models

> show #!1.10 models

> hide #!1.1 models

> volume #1.10 level 0.008

> volume #1.10 level 0.012

> volume #1.10 level 0.011

> show #!1.1 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> show #!1.10 models

> hide #!1.10 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> volume #2.2 level 0.012

> volume #2.3 level 0.012

> volume #2.4 level 0.012

> volume #2.5 level 0.012

> volume #2.6 level 0.012

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> hide #!2.6 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.5 models

> hide #!2.5 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!2.6 models

> hide #!2.6 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.1 models

> volume #4.1 level 0.400

> volume #4.10 level 0.400

> volume #4.1 level 0.400

> volume #4.2 level 0.400

> volume #4.3 level 0.400

> volume #4.4 level 0.400

> volume #4.5 level 0.400

> volume #4.6 level 0.400

> volume #4.7 level 0.400

> volume #4.8 level 0.400

> volume #4.9 level 0.400

> show #!4.2 models

> hide #!4.1 models

> show #!4.3 models

> hide #!4.2 models

> show #!4.4 models

> hide #!4.3 models

> show #!4.5 models

> hide #!4.4 models

> show #!4.6 models

> hide #!4.5 models

> show #!4.7 models

> hide #!4.6 models

> show #!4.8 models

> hide #!4.7 models

> show #!4.9 models

> hide #!4.8 models

> show #!4.10 models

> hide #!4.9 models

> hide #!4.10 models

> show #!10.1 models

> hide #!10.1 models

> show #!10.1 models

> volume #10.1 level 0.012

> volume #10.1 level 0.011

> hide #!10.1 models

> show #!12.1 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.1 models

> hide #!12.1 models

> show #!12.1 models

> hide #!4.1 models

> volume #12.1 level 0.380

> volume #12.1 level 0.360

> hide #!12.1 models

> show #!20.1 models

> volume #20.1 level 0.20

> volume #1.1 level 0.008

> volume #1.3 level 0.190

> volume #1.10 level 0.010

> volume #2.2 level 0.012

> volume #2.3 level 0.012

> volume #2.4 level 0.012

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> volume #4.2 level 0.400

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> volume #4.5 level 0.400

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> volume #4.8 level 0.400

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> volume #12.5 level 0.360

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> volume #20.2 level 0.200

> volume #20.3 level 0.200

> volume #20.4 level 0.200

> color #1.1 gray

> color #1.3 sea green

> color #1.6 sea green

> color #1.8 sea green

> color #1.10 sea green

> color #2.2 sea green

> color #2.3 sea green

> color #2.4 sea green

> color #2.5 sea green

> color #2.6 sea green

> color #4.10 sea green

> color #4.1 sea green

> color #4.2 sea green

> color #4.3 sea green

> color #4.4 sea green

> color #4.5 sea green

> color #4.6 sea green

> color #4.7 sea green

> color #4.8 sea green

> color #4.9 sea green

> color #10.1 sea green

> color #10.2 sea green

> color #10.3 sea green

> color #12.1 sea green

[Repeated 1 time(s)]

> color #12.2 sea green

> color #12.3 sea green

> color #12.4 sea green

> color #12.5 sea green

> color #12.6 sea green

> color #12.7 sea green

> color #12.8 sea green

> color #12.9 sea green

> color #20.1 sea green

> color #20.2 sea green

> color #20.3 sea green

> color #20.4 sea green

> show #!1.10 models

> hide #!1.10 models

> view list

Named views: 76A_sandwich, del9_PTC_overview, del9_overview, ssu_rotation  

> view ssu_rotation

> windowsize 600 300

> view ssu_rotation

> windowsize 600 400

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 600
> width 400 supersample 3

> hide #!1.1 models

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 600
> width 400 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 600
> width 400 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 600
> width 400 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 600 width
> 400 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 600
> width 400 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 600
> width 400 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 600 width
> 400 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 600
> width 400 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 600
> width 400 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 600
> width 400 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 600
> width 400 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 600
> width 400 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 600
> width 400 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 600
> width 400 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 600
> width 400 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 600
> width 400 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 600
> width 400 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 600 width 400 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 600 width 400 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 600
> width 400 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 600 width 400 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 600 width 400 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 600 width 400 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 600
> width 400 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 600
> width 400 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 600
> width 400 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 600
> width 400 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 600
> width 400 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 600
> width 400 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 600
> width 400 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 600
> width 400 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 600
> width 400 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 600
> width 400 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 600
> width 400 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 600
> width 400 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 600
> width 400 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 600
> width 400 supersample 3

> hide #!20.4 models

> graphics quality 1

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 600
> width 400 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 600
> width 400 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 600
> width 400 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 600
> width 400 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 600 width
> 400 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 600
> width 400 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 600
> width 400 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 600 width
> 400 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 600
> width 400 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 600
> width 400 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 600
> width 400 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 600
> width 400 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 600
> width 400 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 600
> width 400 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 600
> width 400 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 600
> width 400 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 600
> width 400 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 600
> width 400 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 600 width 400 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 600 width 400 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 600
> width 400 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 600 width 400 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 600 width 400 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 600 width 400 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 600
> width 400 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 600
> width 400 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 600
> width 400 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 600
> width 400 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 600
> width 400 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 600
> width 400 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 600
> width 400 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 600
> width 400 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 600
> width 400 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 600
> width 400 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 600
> width 400 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 600
> width 400 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 600
> width 400 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 600
> width 400 supersample 3

> hide #!20.4 models

> graphics quality 1

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> graphics quality 1

> graphics silhouettes true

> lighting soft

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> graphics quality 1

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/dalar193/Desktop/movie3.mp4

Movie saved to /Users/dalar193/Desktop/movie3.mp4  
  

> movie record

> turn y 2 180

> wait 180

> movie encode /Users/dalar193/Desktop/movie4.mp4

Movie saved to /Users/dalar193/Desktop/movie4.mp4  
  

> graphics quality 6

> graphics silhouettes false

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> graphics quality 1

> select #1.3

2 models selected  

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> ~select

Nothing selected  

> select #1.3

2 models selected  

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> ~select

Nothing selected  

> graphics selection color black width 1

> select #1.3

2 models selected  

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> ~select

Nothing selected  

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> graphics quality 6

> graphics selection color white width 1

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> select #1.3

2 models selected  

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> ~select

Nothing selected  

> graphics quality 6

> graphics selection color yellow width 1

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> select #1.3

2 models selected  

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> ~select

Nothing selected  

> color #1.1 gray

> color #1.3 magenta

> color #1.10 magenta

> color #2.2 magenta

> color #2.3 magenta

> color #2.4 magenta

> color #2.5 magenta

> color #2.6 magenta

> color #4.10 magenta

> color #4.1 magenta

> color #4.2 magenta

> color #4.3 magenta

> color #4.4 magenta

> color #4.5 magenta

> color #4.6 magenta

> color #4.7 magenta

> color #4.8 magenta

> color #4.9 magenta

> color #10.1 magenta

> color #10.2 magenta

> color #10.3 magenta

> color #12.1 magenta

[Repeated 1 time(s)]

> color #12.2 magenta

> color #12.3 magenta

> color #12.4 magenta

> color #12.5 magenta

> color #12.6 magenta

> color #12.7 magenta

> color #12.8 magenta

> color #12.9 magenta

> color #20.1 magenta

> color #20.2 magenta

> color #20.3 magenta

> color #20.4 magenta

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> graphics quality 1

> hide #!1.1 models

> show #!1.1 models

> show #!1.3 models

> volume #1.3 level 0.18

> volume #1.3 level 0.2

> volume #1.3 level 0.21

> volume #1.3 level 0.23

> volume #1.3 level 0.22

> volume #1.3 level 0.24

> volume #1.3 level 0.23

> volume #1.10 level 0.015

> volume #1.10 level 0.013

> volume #1.10 level 0.012

> volume #1.10 level 0.013

> volume #1.10 level 0.012

> volume #2.2 level 0.013

> volume #2.2 level 0.014

> volume #2.2 level 0.015

> volume #2.2 level 0.014

> volume #2.2 level 0.015

> volume #2.2 level 0.014

> volume #2.3 level 0.014

> volume #2.3 level 0.015

> volume #2.3 level 0.014

> volume #2.4 level 0.014

> volume #2.5 level 0.014

> volume #2.6 level 0.014

> volume #2.6 level 0.013

> volume #2.6 level 0.012

> volume #2.6 level 0.013

> volume #4.10 level 0.41

> volume #4.10 level 0.4

> volume #4.1 level 0.42

> volume #4.1 level 0.45

> volume #4.1 level 0.46

> volume #4.1 level 0.48

> volume #4.1 level 0.5

> volume #4.10 level 0.41

> volume #4.10 level 0.5

> volume #4.10 level 0.35

> volume #4.10 level 0.38

> volume #4.10 level 0.4

> volume #4.2 level 0.45

> volume #4.2 level 0.48

> volume #4.2 level 0.47

> volume #4.3 level 0.5

> volume #4.4 level 0.5

> volume #4.5 level 0.5

> volume #4.5 level 0.48

> volume #4.5 level 0.46

> volume #4.5 level 0.47

> volume #4.5 level 0.48

> volume #4.6 level 0.5

> volume #4.7 level 0.5

> volume #4.8 level 0.5

> volume #4.8 level 0.52

> volume #4.8 level 0.55

> volume #4.9 level 0.55

> volume #4.9 level 0.52

> volume #10.1 level 0.015

> volume #10.1 level 0.014

> volume #10.2 level 0.015

> volume #10.2 level 0.014

> volume #10.2 level 0.015

> volume #10.1 level 0.015

> volume #10.3 level 0.015

> volume #10.3 level 0.014

> volume #10.3 level 0.013

> volume #10.3 level 0.012

> volume #10.3 level 0.011

> volume #12.1 level 0.38

> volume #12.1 level 0.4

> volume #12.2 level 0.4

> volume #12.2 level 0.41

> volume #12.1 level 0.41

> volume #12.1 level 0.4

> volume #12.3 level 0.4

> volume #12.3 level 0.42

> volume #12.3 level 0.43

> volume #12.4 level 0.4

> volume #12.4 level 0.42

> volume #12.5 level 0.4

> volume #12.5 level 0.43

> volume #12.5 level 0.42

> volume #12.5 level 0.41

> volume #12.5 level 0.42

> 42

Unknown command: 42  

> volume #12.6 level 0.42

> volume #12.6 level 0.45

> volume #12.6 level 0.44

> volume #12.6 level 0.43

> volume #12.7 level 0.42

> volume #12.7 level 0.44

> volume #12.8 level 0.4

> volume #12.8 level 0.42

> volume #12.8 level 0.41

> volume #12.9 level 0.4

> volume #12.9 level 0.42

> volume #12.9 level 0.43

> volume #12.9 level 0.42

> volume #12.9 level 0.41

> volume #12.9 level 0.42

> volume #20.1 level 0.22

> volume #20.1 level 0.23

> volume #20.1 level 0.22

> volume #20.2 level 0.22

> volume #20.2 level 0.23

> volume #20.2 level 0.22

> volume #20.3 level 0.22

> volume #20.3 level 0.23

> volume #20.4 level 0.18

> volume #20.4 level 0.16

> volume #20.4 level 0.18

> volume #20.4 level 0.17

> volume #1.1 level 0.008

> volume #1.3 level 0.230

> volume #1.10 level 0.012

> volume #2.2 level 0.014

> volume #2.3 level 0.014

> volume #2.4 level 0.014

> volume #2.5 level 0.014

> volume #2.6 level 0.013

> volume #4.10 level 0.400

> volume #4.1 level 0.500

> volume #4.2 level 0.470

> volume #4.3 level 0.500

> volume #4.4 level 0.500

> volume #4.5 level 0.480

> volume #4.6 level 0.500

> volume #4.7 level 0.500

> volume #4.8 level 0.550

> volume #4.9 level 0.520

> volume #10.1 level 0.015

> volume #10.2 level 0.015

> volume #10.3 level 0.012

> volume #12.10 level 0.360

> volume #12.1 level 0.400

> volume #12.2 level 0.410

> volume #12.3 level 0.430

> volume #12.4 level 0.420

> volume #12.5 level 0.420

> volume #12.6 level 0.430

> volume #12.7 level 0.440

> volume #12.8 level 0.410

> volume #12.9 level 0.420

> volume #20.1 level 0.220

> volume #20.2 level 0.220

> volume #20.3 level 0.230

> volume #20.4 level 0.170

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> graphics quality 6

> show #!1.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8emm_map_c2.png height 400
> width 600 supersample 3

> show #!1.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_8b0x_map_c5.png height 400
> width 600 supersample 3

> hide #!1.3 models

> show #!1.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_7o1a_map_c11.png height 400
> width 600 supersample 3

> hide #!1.10 models

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> show #!2.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape2_c6.png height 400 width
> 600 supersample 3

> hide #!2.3 models

> show #!2.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape3_c2c1c9c7.png height 400
> width 600 supersample 3

> hide #!2.4 models

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> show #!4.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J83_cl0_c0.png height 400
> width 600 supersample 3

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J84_cl1_c1.png height 400
> width 600 supersample 3

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J85_cl2_c2.png height 400
> width 600 supersample 3

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J86_cl3_c3.png height 400
> width 600 supersample 3

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J87_cl4_c4.png height 400
> width 600 supersample 3

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J88_cl5_c5.png height 400
> width 600 supersample 3

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J89_cl6_c6.png height 400
> width 600 supersample 3

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J90_cl7_c7.png height 400
> width 600 supersample 3

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J91_cl8_c8.png height 400
> width 600 supersample 3

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_J92_cl9_c9.png height 400
> width 600 supersample 3

> hide #!4.9 modelsshow #!10.1 models

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!11.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_sharp_c9c3c2c5c1.png
> height 400 width 600 supersample 3

> hide #!11.1 models

> show #!11.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_sharp_c6c7c8c1c5.png
> height 400 width 600 supersample 3

> hide #!11.2 models

> show #!11.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_sharp_c0c1c5.png height
> 400 width 600 supersample 3

> hide #!11.3 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c1_c1.png height 400
> width 600 supersample 3

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J55_c2_c2.png height 400
> width 600 supersample 3

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J56_c3_c3.png height 400
> width 600 supersample 3

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J57_c4_c4.png height 400
> width 600 supersample 3

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J58_c5_c5.png height 400
> width 600 supersample 3

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J59_c6_c6.png height 400
> width 600 supersample 3

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J60_c7_c7.png height 400
> width 600 supersample 3

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J61_c8_c8.png height 400
> width 600 supersample 3

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J62_c9_c9.png height 400
> width 600 supersample 3

> hide #!12.9 models

> show #!20.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J111_ape_c1c1.png height 400
> width 600 supersample 3

> hide #!20.1 models

> show #!20.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J112_ap_c2c1.png height 400
> width 600 supersample 3

> hide #!20.2 models

> show #!20.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J113_pe_c3.png height 400
> width 600 supersample 3

> hide #!20.3 models

> show #!20.4 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_dE_J124_e_c4.png height 400
> width 600 supersample 3

> hide #!20.4 models

> graphics quality 1

> hide #!4.9 models

> volume #2.6 level 0.012

> graphics quality 6

> show #!2.6 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_e_c0.png height 400 width
> 600 supersample 3

> hide #!2.6 models

> volume #2.2 level 0.015

> show #!2.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> hide #!2.2 models

> volume #2.2 level 0.016

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_ape1_c1c2c4.png height 400
> width 600 supersample 3

> view ssu_rotation

> windowsize 600 400

> hide #!11 models

> hide #!10.2 models

> show #!10.1 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_ape_c9c3c2c5c1.png height
> 400 width 600 supersample 3

> hide #!10.1 models

> show #!10.2 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_pe_c6c7c8c1c5.png height
> 400 width 600 supersample 3

> hide #!10.2 models

> show #!10.3 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_e_c0c1c5.png height 400
> width 600 supersample 3

> hide #!10.3 models

> show #!20.4 models

> hide #!20.4 models

> show #!20.4 models

> hide #!20.4 models

> show #!20.4 models

> hide #!20.4 models

> show #!20.4 models

> hide #!20.4 models

> show #!20.4 models

> hide #!20.4 models

> show #!20.4 models

> volume #20.4 level 0.15

> volume #20.4 level 0.17

> volume #20.4 level 0.18

> volume #20.4 level 0.12

> volume #20.4 level 0.13

> volume #20.4 level 0.14

> volume #20.4 level 0.15

> volume #20.4 level 0.16

> volume #20.4 level 0.17

> volume #2.5 level 0.015

> volume #2.5 level 0.014

> volume #2.5 level 0.015

> volume #2.5 level 0.016

> show #!2.5 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d9_pe_c8c6c3.png height 400
> width 600 supersample 3

> hide #!2.5 models

> show #!12.10 models

> hide #!12.10 models

> color #12.10 magenta

> show #!12.10 models

> hide #!12.10 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J54_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> show #!12.10 models

> save /Users/dalar193/Desktop/SSU-rot/SSU-rot_d10_J53_c0_c0.png height 400
> width 600 supersample 3

> hide #!12.10 models

> lighting soft

> lighting simple

> view SSU_rotation

Expected an objects specifier or a view name or a keyword  

> view ssu_rotation

> save /Users/dalar193/wd/deltaRibosomes/figure_ssu_rotation.cxs

> save /Users/dalar193/wd/deltaRibosomes/figure_with_maps.cxs includeMaps true

> lighting simple

[Repeated 1 time(s)]

> view ssu_rotation

> clip list

Using 2 clip planes:  
far offset 25.407, axis -0.247,-0.913,0.325, point 142.6,172.2,127.1)  
near offset -423.17, axis 0.247,0.913,-0.325, point 31.92,-237.4,272.7)  

> view matrix

view matrix camera
0.79432,-0.55514,-0.24672,-27.891,0.0013104,0.40769,-0.91312,-458.73,0.60749,0.72499,0.32456,351.4  
view matrix models
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> hide #!1 models

> show #!1.1 models

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> windowsize 700 500

> volume style mesh

> hide #!1.1 models

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> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.2 models

> show #!1.2 models

> show #!14.1 models

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> show #!14.1 models

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> show #!14.2 models

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> show #!14.10 models

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> show #!14.10 models

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> show #!14.1 models

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> show #!14.2 models

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> show #!14.3 models

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> show #!14.3 models

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> show #!14.3 models

> hide #!14.3 models

> graphics silhouettes true

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> style nucleic atoms

Expected a keyword  

> style nucleic stick

Changed 719706 atom styles  

> style nucleic atoms

Expected a keyword  

> style nucleic sticks

Expected a keyword  

> nucleotides #!1.2 atoms

> style nucleic & #!1.2 stick

Changed 97859 atom styles  

> nucleic atoms

Unknown command: nucleic atoms  

> nucleotides atoms

> graphics silhouettes false

> select #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> graphics selection color black width 1

> graphics silhouettes true

> ~select

Nothing selected  

> select #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> ~select

Nothing selected  

> graphics silhouettes false

> select #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> ~select

Nothing selected  

> graphics silhouettes true

> graphics silhouettes false

> select #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> show #!1.1 models

> volume #1.1 level 0.016

> volume #1.1 level 0.02

> lighting soft

> lighting full

[Repeated 1 time(s)]

> lighting soft

> lighting simple

> lighting soft

> lighting full

> ~select #1.2

Nothing selected  

> hide #!1.1 models

> select ~sel & ##selected

Nothing selected  

> select #1.2

145735 atoms, 154228 bonds, 6 pseudobonds, 13996 residues, 2 models selected  

> ~select #1.2

Nothing selected  

> graphics silhouettes true

> lighting soft

> color #1.2/Y orchid

> color #1.2 white

[Repeated 1 time(s)]

> color #1.2/Y orchid

> cartoon suppressBackboneDisplay false

> cartoon tether opacity 0

> graphics silhouettes false

> show #!1.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> hide #!1.1 models

> color #1.2/Z blue

> color #1.2/v sienna

> color #1.2/a:2058-2062 pale violet red

> color #1.2/a:2447-2453 coral

> color #1.2/a:2499-2507 green yellow

> color #1.2/a:2580-2587 aquamarine

> color #1.2/a:2607-2610 steel blue

> color #1.2/e:55-73 dark green

> view name A_loop

> graphics silhouettes true

> lighting shadows true intensity 0.5

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting shadows true

> lighting shadows false

> lighting flat

[Repeated 1 time(s)]

> lighting simple

[Repeated 1 time(s)]

> lighting soft

> lighting simple

> lighting soft

[Repeated 1 time(s)]

> lighting simple

> graphics quality 6

> save /Users/dalar193/Desktop/image92.png supersample 3

> hide #1.2

> show #1.2/a:2552-2555

> show #1.2/a:2552-2556

> show #1.2/Y:74-76

> show #1.2/Y:73-76

> show #1.2/a:2552-2557

> show #1.2/a:2551-2557

> show #!1.1 models

> hide #!1.1 models

> graphics silhouettes false

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> graphics silhouettes true

> view name A_loop

> ~cartoon #1.2/a:1940-1950

> ~cartoon #1.2/a:1940-1960

> cartoon tether opacity 0

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> view name A_loop

> hbonds #1.2/a:2553-2554 #1.2/Y:74-76

Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
[Repeated 1 time(s)]Skipping possible acceptor with bad geometry: 8emm #1.2/K
IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
[Repeated 1 time(s)]Skipping possible acceptor with bad geometry: 8emm #1.2/K
IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  

Skipped 11 atom(s) with bad connectivities; see log for details  

447 hydrogen bonds found  

> hide #!1.2 models

> show #!1.2 models

> ~hbonds #1.2

[Repeated 1 time(s)]

> ~hbonds

> hbonds #1.2/a:2553-2554

Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
[Repeated 1 time(s)]Skipping possible acceptor with bad geometry: 8emm #1.2/K
IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
[Repeated 1 time(s)]Skipping possible acceptor with bad geometry: 8emm #1.2/K
IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 OXT  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 OXT  
  
Skipping possible acceptor with bad geometry: 8emm #1.2/K IAS 119 O  
Wrong number of grandchild atoms for phi/psi acceptor 8emm #1.2/K IAS 119 O  
  

Skipped 11 atom(s) with bad connectivities; see log for details  

200 hydrogen bonds found  

> ~hbonds

> hbonds #1.2/a:2553-2554 restrict

Missing "restrict" keyword's argument  

> hbonds #1.2/a:2553-2554 restrict #1.2/Y:74-76

5 hydrogen bonds found  

> hbonds #1.2/a:2553-2554 restrict #1.2/Y:74-76,a:2553-2554

5 hydrogen bonds found  

> hbonds #1.2/a:2553-2554 restrict #1.2/a:2553-2554

0 hydrogen bonds found  

> hbonds #1.2/a:2553-2554 restrict #1.2/Y:74-76

5 hydrogen bonds found  

> hbonds #1.2/a:2552-2554 restrict #1.2/Y:74-76

5 hydrogen bonds found  

> hbonds #1.2/a:2552-2554 restrict #1.2/a:2552-2554

0 hydrogen bonds found  

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557

3 hydrogen bonds found  

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557,Y:74-76

3 hydrogen bonds found  

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557/Y:74-76

8 hydrogen bonds found  

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557/Y:74-76 color yellow

8 hydrogen bonds found  

> cartoon tether opacity 0 target All

Expected a keyword  

> cartoon tether opacity 0 target all

Expected a keyword  

> cartoon tether opacity 0 All

Expected a keyword  

> cartoon tether opacity 0 All

Expected a keyword  

> transparency #1.2/a:2551-2557/Y:74-76 color yellow 0 target p

Missing or invalid "percent" argument: Expected a number  

> transparency #1.2/a:2551-2557/Y:74-76 0 target p

> graphics silhouettes false

> graphics silhouettes true

> lighting simple

> graphics silhouettes false

> lighting simple

> lighting soft

> color #1.2 white

> color #1.2/Y indigo

> color #1.2/Z blue

> color #1.2/a:2552 coral

> color #1.2/a:2553 green yellow

> color #1.2/a:2554 aquamarine

> color #1.2/a:2555 steel blue

> color #1.2/a:2552 khaki

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a:2553 moccasin

> color #1.2/a:2553 burly wood

> color #1.2/Y orchid

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557/Y:74-76 color yellow

8 hydrogen bonds found  

> color #1.2/a@P yellow

> color #1.2/a@P white

> color #1.2/a@P,OP1,OP2 white

> color #1.2/a@P,OP1,OP2,O3',O5' white

> color #1.2/a@P,OP1,OP2,O3',O5',C5' white

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5' white

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> show #!1.1 models

> show #1.2/a:2551-2557,2584

> show #1.2/Y:73-76

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557,2584/Y:74-76 color yellow

8 hydrogen bonds found  

> hide #1.2/a:2584

> view A_loop

> ~cartoon #1.2/a:1940-1960

> show #1.2/a:2551-2557,2585

> show #1.2/Y:73-76

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557,2585/Y:74-76 color yellow

8 hydrogen bonds found  

> view A_loop

> ~cartoon #1.2/a:1940-1960

> show #1.2/a:2551-2557,2583

> show #1.2/Y:73-76

> hbonds #1.2/a:2551-2557 restrict #1.2/a:2551-2557,2583/Y:74-76 color yellow

8 hydrogen bonds found  

> hide #1.2/a:2585

> hbonds #1.2/a:2551-2557,2583 restrict #1.2/a:2551-2557,2583/Y:74-76 color
> yellow

10 hydrogen bonds found  

> hbonds #1.2/a:2551-2557,2582-2583 restrict
> #1.2/a:2551-2557,2582-2583/Y:74-76 color yellow

13 hydrogen bonds found  

> cartoon #1.2/a:1940-1960

> show #1.2/a:1956,2551-2557,2582-2583/Y:73-76

> hbonds #1.2/a:1956,2551-2557,2582-2583 restrict
> #1.2/a:1956,2551-2557,2582-2583/Y:74-76 color yellow

13 hydrogen bonds found  

> hide #1.2/a:1956

> show #1.2/a:1955,2551-2557,2582-2583/Y:73-76

> hbonds #1.2/a:1955,2551-2557,2582-2583 restrict
> #1.2/a:1955,2551-2557,2582-2583/Y:74-76 color yellow

14 hydrogen bonds found  

> hide #1.2

> name to_hbond #1.2/a:1955,2551-2557,2582-2583

> show to_show

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> show to_hbond

> name to_show to_hbond|#1.2Y:73-76

"to_hbond|#1.2Y:73-76": only initial part "to_hbond|#1.2" of atom specifier
valid  

> name to_show to_hbond|#1.2/Y:73-76

> show to_show

> hide #!1.1 models

> show #!1.1 models

> ~cartoon #1.2/a:1942-1948

> view A_loop

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2:a/2550-2558/Y:73-76

> name to_hbond #1.2/a:1955,2551-2557,2582-2583

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

14 hydrogen bonds found  

> graphics silhouettes true

> graphics silhouettes false

> hide #!1.2 models

> show #!1.2 models

> hide #!1.1 models

> lighting soft

> lighting simple

> cartoon to_cartoon

> cartoon #1.2:a/2550-2558/Y:73-76

> cartoon #1.2:a/2550-2558

> name to_cartoon #1.2/a:2550-2558/Y:73-76

> cartoon to_cartoon

> name to_show to_hbond|to_cartoon

> color to_show red

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2/a:2550-2558/Y:73-76

> name to_hbond #1.2/a:1955,2551-2557,2582-2583

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

15 hydrogen bonds found  

> view A_loop

> color #1.2 white

> color #1.2/Y orchid

> color #1.2/a:2551

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a@P

> hbonds to_hbond restrict to_show color yellow

15 hydrogen bonds found  

> color #1.2/a@P

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> hide #1.2/a:1955@P,OP1,OP2,C5',O5'

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',O3'

> view A_loop

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',O3',*'

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',O3',C3',C2',O2'

> show #1.2/a:1955

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',O3',C3',C2',O2'

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> color #1.2/Y orchid

> color #1.2/a:2551

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> view A_loop

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> select to_show

340 atoms, 375 bonds, 15 pseudobonds, 16 residues, 2 models selected  

> lighting soft

> lighting simple

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> lighting soft

> lighting full

> lighting soft

> lighting full

> lighting soft

> lighting simple

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> name to_cartoon #1.2/a:2550-2558,2581-2584/Y:73-76

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> ~cartoon

> name to_cartoon #1.2/a:2550-2558/Y:73-76

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2 white

> color #1.2/Y orchid

> color #1.2/a:2551

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> view A_loop

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2/a:2550-2558

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

9 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> name to_show to_hbond|to_cartoon|#1.2/Y:73-76

> show to_show

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> view A_loop

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2/a:2550-2558

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon|#1.2/Y:73-76

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> view A_loop

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2/a:2549-2559

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon|#1.2/Y:73-76

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> graphics silhouettes false

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> view A_loop

> hide #1.2

> ~cartoon #1.2

> name to_cartoon #1.2/a:2549-2559

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show to_hbond|to_cartoon|#1.2/Y:73-76

> cartoon to_cartoon

> show to_show

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> select to_show

426 atoms, 471 bonds, 16 pseudobonds, 20 residues, 2 models selected  

> ~select

Nothing selected  

> graphics silhouettes true

> graphics silhouettes false

> select to_show

426 atoms, 471 bonds, 16 pseudobonds, 20 residues, 2 models selected  

> ~select

Nothing selected  

> graphics silhouettes true

> combine to_cartoon close false modelId 999 name to_cartoon

> ~cartoon #1.2

> cartoon to_cartoon

> ~cartoon #1.2

> hide #!999 models

> show #!999 models

> hide #!999 models

> show #!999 models

> hide #!999 models

> show #!999 models

> cartoon suppressBackboneDisplay true

> cartoon tether opacity 0 target All

Expected a keyword  

> cartoon tether opacity 0

> cartoon tether opacity 1

> hide #!999 models

> ~cartoon #1.2

> show #!999 models

> hide #!999 models

> show #!999 models

> hide #!999 models

> show #!999 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> ~show #999

> ~cartoon #999

> hide #!1.2 models

> cartoon #999

> delete #999

> combine #1.2/Y

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> close #7

> combine #6.1

> close #7

> combine #6.1 close false modelId 999 name to_cartoon

> delete #999:a,v,Y,Z

> hide #!999 models

> show #!999 models

> hide #999

> ~cartoon #999

> show #999

> delete atoms #999:a,v,Y,Z

> delete atoms #999/a,v,Y,Z

> delete atoms #999/a,e,v,Y,Z,3

> delete atoms #999/a,e,l,v,Y,Z,3

> delete atoms #999/a,b,e,l,v,Y,Z,3

> delete atoms #999/a,b,c,e,l,v,Y,Z,3

> delete #999

> combine #1.2

> hide #999

> hide #1.2

> close #7

> windowsize 700 500

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> view A_loop

> show to_show

> show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> show #1.2/a:1955

> show #!1.2 models

> windowsize 500 700

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> combine #1.2 modelId 999 name cartoon

Traceback (most recent call last):  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/cmd_line/tool.py", line 319, in execute  
cmd.run(cmd_text)  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/commands/cli.py", line 2908, in run  
result = ci.function(session, **kw_args)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/atomic/cmd.py", line 91, in combine_cmd  
session.models.add([combination])  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 733, in add  
p = self._parent_for_added_model(model, parent, root_model = root_model)  
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 802, in _parent_for_added_model  
raise ValueError('Tried to add model %s with the same id as another model %s'  
ValueError: Tried to add model cartoon #999 with the same id as another model
cartoon #999  
  
ValueError: Tried to add model cartoon #999 with the same id as another model
cartoon #999  
  
File
"/Applications/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-
packages/chimerax/core/models.py", line 802, in _parent_for_added_model  
raise ValueError('Tried to add model %s with the same id as another model %s'  
  
See log for complete Python traceback.  
  

> windowsize 600 600

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2551-2557,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> view A_loop

> view name A_loop

[Repeated 1 time(s)]

> view matrix

view matrix camera
-0.63711,0.60925,-0.47213,121.73,0.7408,0.31484,-0.59337,145.44,-0.21286,-0.7278,-0.65192,119.58  
view matrix models
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.3,1,0,0,0,0,1,0,0,0,0,1,0,#1.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.5,1,0,0,0,0,1,0,0,0,0,1,0,#1.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.6,1,0,0,0,0,1,0,0,0,0,1,0,#1.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.7,1,0,0,0,0,1,0,0,0,0,1,0,#1.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.8,1,0,0,0,0,1,0,0,0,0,1,0,#1.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.9,1,0,0,0,0,1,0,0,0,0,1,0,#1.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.10,1,0,0,0,0,1,0,0,0,0,1,0,#1.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.11,1,0,0,0,0,1,0,0,0,0,1,0,#1.11.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.3,1,0,0,0,0,1,0,0,0,0,1,0,#2.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.4,1,0,0,0,0,1,0,0,0,0,1,0,#2.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.5,1,0,0,0,0,1,0,0,0,0,1,0,#2.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.6,1,0,0,0,0,1,0,0,0,0,1,0,#2.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.2,1,0,0,0,0,1,0,0,0,0,1,0,#3.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.3,1,0,0,0,0,1,0,0,0,0,1,0,#3.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.4,1,0,0,0,0,1,0,0,0,0,1,0,#3.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.5,1,0,0,0,0,1,0,0,0,0,1,0,#3.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.6,1,0,0,0,0,1,0,0,0,0,1,0,#3.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.10,1,0,0,0,0,1,0,0,0,0,1,0,#4.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.2,1,0,0,0,0,1,0,0,0,0,1,0,#4.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.3,1,0,0,0,0,1,0,0,0,0,1,0,#4.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.4,1,0,0,0,0,1,0,0,0,0,1,0,#4.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.5,1,0,0,0,0,1,0,0,0,0,1,0,#4.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.6,1,0,0,0,0,1,0,0,0,0,1,0,#4.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.7,1,0,0,0,0,1,0,0,0,0,1,0,#4.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.8,1,0,0,0,0,1,0,0,0,0,1,0,#4.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.9,1,0,0,0,0,1,0,0,0,0,1,0,#4.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,1,0,0,0,0,1,0,0,0,0,1,0,#5.10,1,0,0,0,0,1,0,0,0,0,1,0,#5.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.2,1,0,0,0,0,1,0,0,0,0,1,0,#5.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.3,1,0,0,0,0,1,0,0,0,0,1,0,#5.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.4,1,0,0,0,0,1,0,0,0,0,1,0,#5.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.5,1,0,0,0,0,1,0,0,0,0,1,0,#5.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.6,1,0,0,0,0,1,0,0,0,0,1,0,#5.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.7,1,0,0,0,0,1,0,0,0,0,1,0,#5.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.8,1,0,0,0,0,1,0,0,0,0,1,0,#5.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.9,1,0,0,0,0,1,0,0,0,0,1,0,#5.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,1,0,0,0,0,1,0,0,0,0,1,0,#6.10,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.3,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.4,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.5,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.6,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.7,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.8,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.9,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#10,1,0,0,0,0,1,0,0,0,0,1,0,#10.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.2,1,0,0,0,0,1,0,0,0,0,1,0,#10.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.3,1,0,0,0,0,1,0,0,0,0,1,0,#10.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#11,1,0,0,0,0,1,0,0,0,0,1,0,#11.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.2,1,0,0,0,0,1,0,0,0,0,1,0,#11.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.3,1,0,0,0,0,1,0,0,0,0,1,0,#11.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12,1,0,0,0,0,1,0,0,0,0,1,0,#12.10,1,0,0,0,0,1,0,0,0,0,1,0,#12.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.2,1,0,0,0,0,1,0,0,0,0,1,0,#12.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.3,1,0,0,0,0,1,0,0,0,0,1,0,#12.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.4,1,0,0,0,0,1,0,0,0,0,1,0,#12.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.5,1,0,0,0,0,1,0,0,0,0,1,0,#12.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.6,1,0,0,0,0,1,0,0,0,0,1,0,#12.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.7,1,0,0,0,0,1,0,0,0,0,1,0,#12.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.8,1,0,0,0,0,1,0,0,0,0,1,0,#12.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,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 
  

> clip list

Using 2 clip planes:  
near offset -13.905, axis 0.472,0.593,0.652, point 137.5,165.2,141.3)  
far offset 8.0784, axis -0.472,-0.593,-0.652, point 147.8,178.3,155.6)  

> view name A_loop

> view matrix

view matrix camera
-0.73046,0.61978,-0.28688,130.08,0.57465,0.33079,-0.74857,138.95,-0.36905,-0.71166,-0.59779,122.29  
view matrix models
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 
  

> clip list

Using 2 clip planes:  
near offset -12.955, axis 0.287,0.749,0.598, point 139.6,163.9,142.2)  
far offset 9.0278, axis -0.287,-0.749,-0.598, point 145.9,180.4,155.4)  

> view name A_loop

> view matrix

view matrix camera
-0.67442,0.62693,-0.39002,125.42,0.68998,0.34709,-0.63518,143.71,-0.26284,-0.69749,-0.66665,119.04  
view matrix models
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.3,1,0,0,0,0,1,0,0,0,0,1,0,#1.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.5,1,0,0,0,0,1,0,0,0,0,1,0,#1.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.6,1,0,0,0,0,1,0,0,0,0,1,0,#1.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.7,1,0,0,0,0,1,0,0,0,0,1,0,#1.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.8,1,0,0,0,0,1,0,0,0,0,1,0,#1.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.9,1,0,0,0,0,1,0,0,0,0,1,0,#1.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.10,1,0,0,0,0,1,0,0,0,0,1,0,#1.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.11,1,0,0,0,0,1,0,0,0,0,1,0,#1.11.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.12.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2,1,0,0,0,0,1,0,0,0,0,1,0,#2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.2,1,0,0,0,0,1,0,0,0,0,1,0,#2.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.3,1,0,0,0,0,1,0,0,0,0,1,0,#2.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.4,1,0,0,0,0,1,0,0,0,0,1,0,#2.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.5,1,0,0,0,0,1,0,0,0,0,1,0,#2.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#2.6,1,0,0,0,0,1,0,0,0,0,1,0,#2.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#3,1,0,0,0,0,1,0,0,0,0,1,0,#3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.2,1,0,0,0,0,1,0,0,0,0,1,0,#3.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.3,1,0,0,0,0,1,0,0,0,0,1,0,#3.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.4,1,0,0,0,0,1,0,0,0,0,1,0,#3.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.5,1,0,0,0,0,1,0,0,0,0,1,0,#3.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#3.6,1,0,0,0,0,1,0,0,0,0,1,0,#3.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4,1,0,0,0,0,1,0,0,0,0,1,0,#4.10,1,0,0,0,0,1,0,0,0,0,1,0,#4.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.2,1,0,0,0,0,1,0,0,0,0,1,0,#4.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.3,1,0,0,0,0,1,0,0,0,0,1,0,#4.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.4,1,0,0,0,0,1,0,0,0,0,1,0,#4.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.5,1,0,0,0,0,1,0,0,0,0,1,0,#4.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.6,1,0,0,0,0,1,0,0,0,0,1,0,#4.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.7,1,0,0,0,0,1,0,0,0,0,1,0,#4.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.8,1,0,0,0,0,1,0,0,0,0,1,0,#4.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#4.9,1,0,0,0,0,1,0,0,0,0,1,0,#4.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#5,1,0,0,0,0,1,0,0,0,0,1,0,#5.10,1,0,0,0,0,1,0,0,0,0,1,0,#5.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.2,1,0,0,0,0,1,0,0,0,0,1,0,#5.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.3,1,0,0,0,0,1,0,0,0,0,1,0,#5.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.4,1,0,0,0,0,1,0,0,0,0,1,0,#5.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.5,1,0,0,0,0,1,0,0,0,0,1,0,#5.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.6,1,0,0,0,0,1,0,0,0,0,1,0,#5.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.7,1,0,0,0,0,1,0,0,0,0,1,0,#5.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.8,1,0,0,0,0,1,0,0,0,0,1,0,#5.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#5.9,1,0,0,0,0,1,0,0,0,0,1,0,#5.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6,1,0,0,0,0,1,0,0,0,0,1,0,#6.10,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.3,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.4,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.5,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.6,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.7,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.8,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#6.9,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#6.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#10,1,0,0,0,0,1,0,0,0,0,1,0,#10.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.2,1,0,0,0,0,1,0,0,0,0,1,0,#10.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#10.3,1,0,0,0,0,1,0,0,0,0,1,0,#10.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#11,1,0,0,0,0,1,0,0,0,0,1,0,#11.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.2,1,0,0,0,0,1,0,0,0,0,1,0,#11.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#11.3,1,0,0,0,0,1,0,0,0,0,1,0,#11.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12,1,0,0,0,0,1,0,0,0,0,1,0,#12.10,1,0,0,0,0,1,0,0,0,0,1,0,#12.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.2,1,0,0,0,0,1,0,0,0,0,1,0,#12.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.3,1,0,0,0,0,1,0,0,0,0,1,0,#12.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.4,1,0,0,0,0,1,0,0,0,0,1,0,#12.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.5,1,0,0,0,0,1,0,0,0,0,1,0,#12.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.6,1,0,0,0,0,1,0,0,0,0,1,0,#12.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.7,1,0,0,0,0,1,0,0,0,0,1,0,#12.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.8,1,0,0,0,0,1,0,0,0,0,1,0,#12.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,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 
  

> clip list

Using 2 clip planes:  
near offset -13.658, axis 0.390,0.635,0.667, point 138.4,164.9,141.3)  
far offset 8.3252, axis -0.390,-0.635,-0.667, point 147,178.8,155.9)  

> show #!1.1 models

> hide #!1.1 models

> lighting simple

> graphics silhouettes false

> graphics silhouettes true

> color to_show&:O? red

> color to_show&@O? red

> color to_show&@N? blue

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> graphics quality 7

> graphics quality 6

> save /Users/dalar193/Desktop/image93.png supersample 3

> save /Users/dalar193/Desktop/image94.png supersample 3

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> save /Users/dalar193/Desktop/image95.png supersample 3

> show #!1.1 models

> hide #!1.1 models

> color to_show&@P? orange

> color to_show&@P orange

> color to_show&@P white

> color to_show&@O?,O?' red

> color to_show&@N?,N?' blue

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> lighting soft

> lighting simple

> lighting full

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting full

> lighting simple

> hide #!1.2 models

> hide #!999 models

> show #!6.10 models

> hide 6.10

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> ~cartoon 6.10

> cartoon hide 6.10

Expected an atoms specifier or a keyword  

> color 6.10 white

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> delete #999

> combine 6.10 modelId 999 name cartoon

Expected a keyword  

> color 6.10/a:2552 pale violet red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2553 khaki

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2554 green yellow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2555 aquamarine

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2556 steel blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/Y orchid

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2582 medium purple

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2583 royal blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond 6.10/a:1955,2550-2558,2581-2584

"6.10/a:1955,2550-2558,2581-2584": invalid atom specifier  

> name to_show 6.10/a:1955,2549-2559,2581-2584/Y:73-76

"6.10/a:1955,2549-2559,2581-2584/Y:73-76": invalid atom specifier  

> cartoon to_cartoon

> show to_show

> hide 6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/d9-PTC-overview/d9-PTC-overview_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

> show #!6.10 models

> hide 6.10

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> ~cartoon 6.10

> cartoon hide 6.10

Expected an atoms specifier or a keyword  

> color 6.10 white

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> delete #999

> combine 6.10 modelId 999 name cartoon

Expected a keyword  

> color 6.10/a:2552 pale violet red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2553 khaki

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2554 green yellow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2555 aquamarine

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2556 steel blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/Y orchid

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2582 medium purple

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2583 royal blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond 6.10/a:1955,2550-2558,2581-2584

"6.10/a:1955,2550-2558,2581-2584": invalid atom specifier  

> name to_show 6.10/a:1955,2549-2559,2581-2584/Y:73-76

"6.10/a:1955,2549-2559,2581-2584/Y:73-76": invalid atom specifier  

> cartoon to_cartoon

> show to_show

> hide 6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> cartoon suppressBackboneDisplay false

> cartoon tether scale 0

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #1.2/a:2549-2559

> name to_hbond #1.2/a:1955,2550-2558,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

19 hydrogen bonds found  

> show #!1.2 models

> delete #999

> windowsize 600 600

> lighting simple

> graphics silhouettes true

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2550-2558,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

19 hydrogen bonds found  

> windowsize 600 600

> lighting simple

> graphics silhouettes true

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2550-2558,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

19 hydrogen bonds found  

> hide #!1.2 models

> hide #!999 models

> show #!6.10 models

> hide 6.10

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> ~cartoon 6.10

> cartoon hide 6.10

Expected an atoms specifier or a keyword  

> color 6.10 white

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> delete #999

> combine 6.10 modelId 999 name cartoon

Expected a keyword  

> color 6.10/a:2552 pale violet red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2553 khaki

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2554 green yellow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2555 aquamarine

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2556 steel blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/Y orchid

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2582 medium purple

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color 6.10/a:2583 royal blue

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond 6.10/a:1955,2550-2558,2581-2584

"6.10/a:1955,2550-2558,2581-2584": invalid atom specifier  

> name to_show 6.10/a:1955,2549-2559,2581-2584/Y:73-76

"6.10/a:1955,2549-2559,2581-2584/Y:73-76": invalid atom specifier  

> cartoon to_cartoon

> show to_show

> hide 6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword  

> hbonds to_hbond restrict to_show color yellow

19 hydrogen bonds found  

> hide #!6.10 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:2582 medium purple

> color #6.10/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2550-2558,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

12 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> hide #!999 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:2582 medium purple

> color #6.10/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> delete #999

> combine #6.1 modelId 999 name cartoon

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:2582 medium purple

> color #6.1/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.1/a:1955,2549-2559,2581-2584

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> volume style mesh

> nucleotides atoms

> windowsize 600 600

> lighting simple

> graphics silhouettes true

> view A_loop

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:2582 medium purple

> color #6.10/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> delete #999

> combine #6.1 modelId 999 name cartoon

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:2582 medium purple

> color #6.1/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.1/a:1955,2549-2559,2581-2584

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> view A_loop

> show #!1.2 models

> hide #!1.2 models

> hide #!999 models

> volume style mesh

> nucleotides atoms

> windowsize 600 600

> lighting simple

> graphics silhouettes true

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> show #!1.5 models

> hide #1.5

> ~cartoon #1.5

> color #1.5 white

> delete #999

> combine #1.5 modelId 999 name cartoon

> color #1.5/a:2552 pale violet red

> color #1.5/a:2553 khaki

> color #1.5/a:2554 green yellow

> color #1.5/a:2555 aquamarine

> color #1.5/a:2556 steel blue

> color #1.5/Y orchid

> color #1.5/a:2582 medium purple

> color #1.5/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.5/a:1955,2549-2559,2581-2584

> name to_show #1.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

1 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8b0x.png height 600 width 600
> supersample 3

> hide #!1.5 models

> delete #999

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> delete #999

> combine #1.7 modelId 999 name cartoon

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:2582 medium purple

> color #1.7/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.7/a:1955,2549-2559,2581-2584

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 600 width 600
> supersample 3

> hide #!1.7 models

> delete #999

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> delete #999

> combine #1.9 modelId 999 name cartoon

> color #1.9/a:2552 pale violet red

> color #1.9/a:2553 khaki

> color #1.9/a:2554 green yellow

> color #1.9/a:2555 aquamarine

> color #1.9/a:2556 steel blue

> color #1.9/Y orchid

> color #1.9/a:2582 medium purple

> color #1.9/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.9/a:1955,2549-2559,2581-2584

> name to_show #1.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

Atom specifier selects no atoms  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 600 width 600
> supersample 3

> hide #!1.9 models

> delete #999

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> delete #999

> combine #1.11 modelId 999 name cartoon

> color #1.11/a:2552 pale violet red

> color #1.11/a:2553 khaki

> color #1.11/a:2554 green yellow

> color #1.11/a:2555 aquamarine

> color #1.11/a:2556 steel blue

> color #1.11/Y orchid

> color #1.11/a:2582 medium purple

> color #1.11/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.11/a:1955,2549-2559,2581-2584

> name to_show #1.11/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

Atom specifier selects no atoms  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> delete #999

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:2582 medium purple

> color #6.10/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> delete #999

> combine #6.1 modelId 999 name cartoon

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:2582 medium purple

> color #6.1/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.1/a:1955,2549-2559,2581-2584

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> delete #999

> combine #6.2 modelId 999 name cartoon

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:2582 medium purple

> color #6.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.2/a:1955,2549-2559,2581-2584

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 600 width
> 600 supersample 3

> hide #!6.2 models

> delete #999

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> delete #999

> combine #6.3 modelId 999 name cartoon

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:2582 medium purple

> color #6.3/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.3/a:1955,2549-2559,2581-2584

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 600 width
> 600 supersample 3

> hide #!6.3 models

> delete #999

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> delete #999

> combine #6.4 modelId 999 name cartoon

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:2582 medium purple

> color #6.4/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.4/a:1955,2549-2559,2581-2584

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 600 width
> 600 supersample 3

> hide #!6.4 models

> delete #999

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> delete #999

> combine #6.5 modelId 999 name cartoon

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:2582 medium purple

> color #6.5/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.5/a:1955,2549-2559,2581-2584

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 600 width
> 600 supersample 3

> hide #!6.5 models

> delete #999

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> delete #999

> combine #6.6 modelId 999 name cartoon

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:2582 medium purple

> color #6.6/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.6/a:1955,2549-2559,2581-2584

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 600 width
> 600 supersample 3

> hide #!6.6 models

> delete #999

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> delete #999

> combine #6.7 modelId 999 name cartoon

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:2582 medium purple

> color #6.7/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.7/a:1955,2549-2559,2581-2584

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 600 width
> 600 supersample 3

> hide #!6.7 models

> delete #999

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> delete #999

> combine #6.8 modelId 999 name cartoon

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:2582 medium purple

> color #6.8/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.8/a:1955,2549-2559,2581-2584

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 600 width
> 600 supersample 3

> hide #!6.8 models

> delete #999

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> delete #999

> combine #6.9 modelId 999 name cartoon

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:2582 medium purple

> color #6.9/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.9/a:1955,2549-2559,2581-2584

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 600 width
> 600 supersample 3

> hide #!6.9 models

> delete #999

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> delete #999

> combine #14.10 modelId 999 name cartoon

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:2582 medium purple

> color #14.10/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.10/a:1955,2549-2559,2581-2584

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 600 width
> 600 supersample 3

> hide #!14.10 models

> delete #999

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> delete #999

> combine #14.1 modelId 999 name cartoon

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:2582 medium purple

> color #14.1/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.1/a:1955,2549-2559,2581-2584

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 600 width
> 600 supersample 3

> hide #!14.1 models

> delete #999

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> delete #999

> combine #14.2 modelId 999 name cartoon

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:2582 medium purple

> color #14.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.2/a:1955,2549-2559,2581-2584

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 600 width
> 600 supersample 3

> hide #!14.2 models

> delete #999

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> delete #999

> combine #14.3 modelId 999 name cartoon

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:2582 medium purple

> color #14.3/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.3/a:1955,2549-2559,2581-2584

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 600 width
> 600 supersample 3

> hide #!14.3 models

> delete #999

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> delete #999

> combine #14.4 modelId 999 name cartoon

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:2582 medium purple

> color #14.4/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.4/a:1955,2549-2559,2581-2584

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 600 width
> 600 supersample 3

> hide #!14.4 models

> delete #999

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> delete #999

> combine #14.5 modelId 999 name cartoon

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:2582 medium purple

> color #14.5/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.5/a:1955,2549-2559,2581-2584

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 600 width
> 600 supersample 3

> hide #!14.5 models

> delete #999

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> delete #999

> combine #14.6 modelId 999 name cartoon

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:2582 medium purple

> color #14.6/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.6/a:1955,2549-2559,2581-2584

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 600 width
> 600 supersample 3

> hide #!14.6 models

> delete #999

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> delete #999

> combine #14.7 modelId 999 name cartoon

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:2582 medium purple

> color #14.7/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.7/a:1955,2549-2559,2581-2584

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 600 width
> 600 supersample 3

> hide #!14.7 models

> delete #999

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> delete #999

> combine #14.8 modelId 999 name cartoon

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:2582 medium purple

> color #14.8/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.8/a:1955,2549-2559,2581-2584

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 600 width
> 600 supersample 3

> hide #!14.8 models

> delete #999

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> delete #999

> combine #14.9 modelId 999 name cartoon

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:2582 medium purple

> color #14.9/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.9/a:1955,2549-2559,2581-2584

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 600 width
> 600 supersample 3

> hide #!14.9 models

> delete #999

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> delete #999

> combine #22.1 modelId 999 name cartoon

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:2582 medium purple

> color #22.1/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.1/a:1955,2549-2559,2581-2584

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 600 width
> 600 supersample 3

> hide #!22.1 models

> delete #999

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> delete #999

> combine #22.2 modelId 999 name cartoon

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:2582 medium purple

> color #22.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.2/a:1955,2549-2559,2581-2584

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 600 width
> 600 supersample 3

> hide #!22.2 models

> delete #999

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> delete #999

> combine #22.3 modelId 999 name cartoon

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:2582 medium purple

> color #22.3/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.3/a:1955,2549-2559,2581-2584

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 600 width
> 600 supersample 3

> hide #!22.3 models

> delete #999

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> delete #999

> combine #22.4 modelId 999 name cartoon

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:2582 medium purple

> color #22.4/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.4/a:1955,2549-2559,2581-2584

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 600 width
> 600 supersample 3

> hide #!22.4 models

> delete #999

> graphics quality 1

> dalar193@UU-GWCLF004GH:~/tmp ./render_models.py

Unknown command: dalar193@UU-GWCLF004GH:~/tmp ./render_models.py  

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> show #!1.5 models

> hide #1.5

> ~cartoon #1.5

> color #1.5 white

> delete #999

> combine #1.5 modelId 999 name cartoon

> color #1.5/a:2552 pale violet red

> color #1.5/a:2553 khaki

> color #1.5/a:2554 green yellow

> color #1.5/a:2555 aquamarine

> color #1.5/a:2556 steel blue

> color #1.5/Y orchid

> color #1.5/a:2582 medium purple

> color #1.5/a:2583 royal blue

> color #1.5/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.5/a:1955,2549-2559,2581-2584

> name to_show #1.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

1 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8b0x.png height 600 width 600
> supersample 3

> hide #!1.5 models

> delete #999

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> delete #999

> combine #1.7 modelId 999 name cartoon

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:2582 medium purple

> color #1.7/a:2583 royal blue

> color #1.7/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.7/a:1955,2549-2559,2581-2584

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 600 width 600
> supersample 3

> hide #!1.7 models

> delete #999

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> delete #999

> combine #1.9 modelId 999 name cartoon

> color #1.9/a:2552 pale violet red

> color #1.9/a:2553 khaki

> color #1.9/a:2554 green yellow

> color #1.9/a:2555 aquamarine

> color #1.9/a:2556 steel blue

> color #1.9/Y orchid

> color #1.9/a:2582 medium purple

> color #1.9/a:2583 royal blue

> color #1.9/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.9/a:1955,2549-2559,2581-2584

> name to_show #1.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

Atom specifier selects no atoms  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 600 width 600
> supersample 3

> hide #!1.9 models

> delete #999

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> delete #999

> combine #1.11 modelId 999 name cartoon

> color #1.11/a:2552 pale violet red

> color #1.11/a:2553 khaki

> color #1.11/a:2554 green yellow

> color #1.11/a:2555 aquamarine

> color #1.11/a:2556 steel blue

> color #1.11/Y orchid

> color #1.11/a:2582 medium purple

> color #1.11/a:2583 royal blue

> color #1.11/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.11/a:1955,2549-2559,2581-2584

> name to_show #1.11/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

Atom specifier selects no atoms  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> delete #999

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:2582 medium purple

> color #6.10/a:2583 royal blue

> color #6.10/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> delete #999

> combine #6.1 modelId 999 name cartoon

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:2582 medium purple

> color #6.1/a:2583 royal blue

> color #6.1/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.1/a:1955,2549-2559,2581-2584

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> delete #999

> combine #6.2 modelId 999 name cartoon

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:2582 medium purple

> color #6.2/a:2583 royal blue

> color #6.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.2/a:1955,2549-2559,2581-2584

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 600 width
> 600 supersample 3

> hide #!6.2 models

> delete #999

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> delete #999

> combine #6.3 modelId 999 name cartoon

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:2582 medium purple

> color #6.3/a:2583 royal blue

> color #6.3/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.3/a:1955,2549-2559,2581-2584

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 600 width
> 600 supersample 3

> hide #!6.3 models

> delete #999

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> delete #999

> combine #6.4 modelId 999 name cartoon

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:2582 medium purple

> color #6.4/a:2583 royal blue

> color #6.4/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.4/a:1955,2549-2559,2581-2584

> name

Missing or invalid "name" argument: Expected a text string  

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> show #!1.2 models

> save /Users/dalar193/Desktop/image86.png supersample 3

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color to_show&@O* red

> color to_show&@N* blue

> color to_show&@P orange

> save /Users/dalar193/Desktop/image87.png supersample 3

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/image87.png supersample 3

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/image88.png supersample 3

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/image89.png supersample 3

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color to_show&@P orange

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',C5',O2P,O1P white

> color to_show&@P orange

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> color to_show&@P orange

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/image90.png supersample 3

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/image91.png supersample 3

> hide #!1.2 models

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2582 medium purple

> color #1.2/a:2583 royal blue

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_hbond restrict to_show color yellow

23 hydrogen bonds found  

> color #1.2/a:2581 olive

> color #1.2/a:2583 medium purple

> color #1.2/a:2581 olive

> color #1.2/a:2583 medium purple

> color #1.2/a:2582 royal blue

> color #1.2/a:2581 teal

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> color #1.2/a:1955 pale green

> color #1.2/a:1955 pale goldenrod

> color #1.2/a:1955 cornsilk

> color #1.2/a:1955 light green

> color #1.2/a:1955 pale green

> color #1.2/a:1955 beige

> color #1.2/a:1955 pale goldenrod

> color #1.2/a:1955 wheat

> color #1.2/a:1955 pale turquoise

> color #1.2/a:1955 pale green

> hide #!1.2 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> delete #999

> combine #14.8 modelId 999 name cartoon

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.8/a:1955,2549-2559,2581-2584

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> hide #!14.8 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> delete #999

> combine #1.7 modelId 999 name cartoon

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.7/a:1955,2549-2559,2581-2584

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 600 width 600
> supersample 3

> hide #!1.7 models

> delete #999

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> delete #999

> combine #6.1 modelId 999 name cartoon

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.1/a:1955,2549-2559,2581-2584

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> delete #999

> combine #6.2 modelId 999 name cartoon

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.2/a:1955,2549-2559,2581-2584

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 600 width
> 600 supersample 3

> hide #!6.2 models

> delete #999

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> delete #999

> combine #6.3 modelId 999 name cartoon

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.3/a:1955,2549-2559,2581-2584

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 600 width
> 600 supersample 3

> hide #!6.3 models

> delete #999

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> delete #999

> combine #6.4 modelId 999 name cartoon

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.4/a:1955,2549-2559,2581-2584

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 600 width
> 600 supersample 3

> hide #!6.4 models

> delete #999

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> delete #999

> combine #6.5 modelId 999 name cartoon

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.5/a:1955,2549-2559,2581-2584

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 600 width
> 600 supersample 3

> hide #!6.5 models

> delete #999

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> delete #999

> combine #6.6 modelId 999 name cartoon

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.6/a:1955,2549-2559,2581-2584

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 600 width
> 600 supersample 3

> hide #!6.6 models

> delete #999

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> delete #999

> combine #6.7 modelId 999 name cartoon

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.7/a:1955,2549-2559,2581-2584

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 600 width
> 600 supersample 3

> hide #!6.7 models

> delete #999

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> delete #999

> combine #6.8 modelId 999 name cartoon

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.8/a:1955,2549-2559,2581-2584

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 600 width
> 600 supersample 3

> hide #!6.8 models

> delete #999

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> delete #999

> combine #6.9 modelId 999 name cartoon

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.9/a:1955,2549-2559,2581-2584

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 600 width
> 600 supersample 3

> hide #!6.9 models

> delete #999

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> delete #999

> combine #14.10 modelId 999 name cartoon

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.10/a:1955,2549-2559,2581-2584

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 600 width
> 600 supersample 3

> hide #!14.10 models

> delete #999

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> delete #999

> combine #14.1 modelId 999 name cartoon

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.1/a:1955,2549-2559,2581-2584

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 600 width
> 600 supersample 3

> hide #!14.1 models

> delete #999

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> delete #999

> combine #14.2 modelId 999 name cartoon

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.2/a:1955,2549-2559,2581-2584

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 600 width
> 600 supersample 3

> hide #!14.2 models

> delete #999

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> delete #999

> combine #14.3 modelId 999 name cartoon

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.3/a:1955,2549-2559,2581-2584

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 600 width
> 600 supersample 3

> hide #!14.3 models

> delete #999

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> delete #999

> combine #14.4 modelId 999 name cartoon

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.4/a:1955,2549-2559,2581-2584

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 600 width
> 600 supersample 3

> hide #!14.4 models

> delete #999

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> delete #999

> combine #14.5 modelId 999 name cartoon

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.5/a:1955,2549-2559,2581-2584

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 600 width
> 600 supersample 3

> hide #!14.5 models

> delete #999

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> delete #999

> combine #14.6 modelId 999 name cartoon

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.6/a:1955,2549-2559,2581-2584

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 600 width
> 600 supersample 3

> hide #!14.6 models

> delete #999

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> delete #999

> combine #14.7 modelId 999 name cartoon

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.7/a:1955,2549-2559,2581-2584

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 600 width
> 600 supersample 3

> hide #!14.7 models

> delete #999

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> delete #999

> combine #14.8 modelId 999 name cartoon

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.8/a:1955,2549-2559,2581-2584

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 600 width
> 600 supersample 3

> hide #!14.8 models

> delete #999

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> delete #999

> combine #14.9 modelId 999 name cartoon

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #14.9/a:1955,2549-2559,2581-2584

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 600 width
> 600 supersample 3

> hide #!14.9 models

> delete #999

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> delete #999

> combine #22.1 modelId 999 name cartoon

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.1/a:1955,2549-2559,2581-2584

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 600 width
> 600 supersample 3

> hide #!22.1 models

> delete #999

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> delete #999

> combine #22.2 modelId 999 name cartoon

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.2/a:1955,2549-2559,2581-2584

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 600 width
> 600 supersample 3

> hide #!22.2 models

> delete #999

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> delete #999

> combine #22.3 modelId 999 name cartoon

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.3/a:1955,2549-2559,2581-2584

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 600 width
> 600 supersample 3

> hide #!22.3 models

> delete #999

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> delete #999

> combine #22.4 modelId 999 name cartoon

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #22.4/a:1955,2549-2559,2581-2584

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 600 width
> 600 supersample 3

> hide #!22.4 models

> delete #999

> graphics quality 1

> show #!1.2 models

> graphics selection color green width 1

> select clear

[Repeated 1 time(s)]

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> select add #1.2.2

24 pseudobonds, 1 model selected  

> select subtract #1.2.2

Nothing selected  

> hide #!1.2 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> view A_loop

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> delete #999

> combine #1.2 modelId 999 name cartoon

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2/a,Y@P,OP1,OP2,O3',O5',O2P,O1P white

> name to_cartoon #999/a:2549-2559

> name to_hbond #1.2/a:1955,2549-2559,2581-2584

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> delete #999

> combine #6.10 modelId 999 name cartoon

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> name to_cartoon #999/a:2549-2559

> name to_hbond #6.10/a:1955,2549-2559,2581-2584

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!1.2 models

> cartoon #1.2/a:2549-2559

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2 white target c

> color #1.2 white

> color #1.2/a:2552 pale violet red target b

> color #1.2/a:2553 khaki target b

> color #1.2/a:2554 green yellow target b

> color #1.2/a:2555 aquamarine target b

> color #1.2/a:2556 steel blue target b

> color #1.2/Y orchid target b

> color #1.2/a:1955 pale green target b

> color #1.2/a:2581 teal target b

> color #1.2/a:2582 royal blue target b

> color #1.2/a:2583 medium purple target b

> color #1.2/a:2552 pale violet red target a

> color #1.2/a:2553 khaki target a

> color #1.2/a:2554 green yellow target a

> color #1.2/a:2555 aquamarine target a

> color #1.2/a:2556 steel blue target a

> color #1.2/a:2552 pale violet red target a

> color #1.2/a:2553 khaki target a

> color #1.2/a:2554 green yellow target a

> color #1.2/a:2555 aquamarine target a

> color #1.2/a:2556 steel blue target a

> color #1.2/Y orchid target a

> color #1.2/a:1955 pale green target a

> color #1.2/a:2581 teal target a

> color #1.2/a:2582 royal blue target a

> color #1.2/a:2583 medium purple target a

> color #1.2 yellow target p

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!4.10 models

> hide #!4.10 models

> show #!4.10 models

> hide #!4.10 models

> show #!6.10 models

[Repeated 1 time(s)]

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> delete #999

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 600 width 600
> supersample 3

> hide #!1.7 models

> delete #999

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> delete #999

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> delete #999

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 600 width
> 600 supersample 3

> hide #!6.2 models

> delete #999

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 600 width
> 600 supersample 3

> hide #!6.3 models

> delete #999

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 600 width
> 600 supersample 3

> hide #!6.4 models

> delete #999

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 600 width
> 600 supersample 3

> hide #!6.5 models

> delete #999

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 600 width
> 600 supersample 3

> hide #!6.6 models

> delete #999

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 600 width
> 600 supersample 3

> hide #!6.7 models

> delete #999

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 600 width
> 600 supersample 3

> hide #!6.8 models

> delete #999

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 600 width
> 600 supersample 3

> hide #!6.9 models

> delete #999

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 600 width
> 600 supersample 3

> hide #!14.10 models

> delete #999

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 600 width
> 600 supersample 3

> hide #!14.1 models

> delete #999

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 600 width
> 600 supersample 3

> hide #!14.2 models

> delete #999

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 600 width
> 600 supersample 3

> hide #!14.3 models

> delete #999

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 600 width
> 600 supersample 3

> hide #!14.4 models

> delete #999

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 600 width
> 600 supersample 3

> hide #!14.5 models

> delete #999

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 600 width
> 600 supersample 3

> hide #!14.6 models

> delete #999

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 600 width
> 600 supersample 3

> hide #!14.7 models

> delete #999

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 600 width
> 600 supersample 3

> hide #!14.8 models

> delete #999

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 600 width
> 600 supersample 3

> hide #!14.9 models

> delete #999

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 600 width
> 600 supersample 3

> hide #!22.1 models

> delete #999

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 600 width
> 600 supersample 3

> hide #!22.2 models

> delete #999

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 600 width
> 600 supersample 3

> hide #!22.3 models

> delete #999

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 600 width
> 600 supersample 3

> hide #!22.4 models

> delete #999

> graphics quality 1

> show #!1.2 models

> show #!1.11 models

> hide #!1.11 models

> hide #!1.2 models

> show #!1.11 models

> show #!1.11 atoms

> windowsize 600 600

> lighting simple

> graphics silhouettes true

> hide #!1.11 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> show #!1.2 models

> show #!1.11 models

> view A_loop

> hide #!1.2 models

> hide #!1.11 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> show #!1.9 models

> show #!1.9 atoms

> view A_loop

> hide #!1.9 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 600 width 600
> supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 600 width 600
> supersample 3

> hide #!1.7 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 600 width 600
> supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 600 width 600
> supersample 3

> hide #!1.11 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 600 width
> 600 supersample 3

> hide #!6.10 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 600 width
> 600 supersample 3

> hide #!6.1 models

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 600 width
> 600 supersample 3

> hide #!6.2 models

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 600 width
> 600 supersample 3

> hide #!6.3 models

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 600 width
> 600 supersample 3

> hide #!6.4 models

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 600 width
> 600 supersample 3

> hide #!6.5 models

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 600 width
> 600 supersample 3

> hide #!6.6 models

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 600 width
> 600 supersample 3

> hide #!6.7 models

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 600 width
> 600 supersample 3

> hide #!6.8 models

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 600 width
> 600 supersample 3

> hide #!6.9 models

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 600 width
> 600 supersample 3

> hide #!14.10 models

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 600 width
> 600 supersample 3

> hide #!14.1 models

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 600 width
> 600 supersample 3

> hide #!14.2 models

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 600 width
> 600 supersample 3

> hide #!14.3 models

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 600 width
> 600 supersample 3

> hide #!14.4 models

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 600 width
> 600 supersample 3

> hide #!14.5 models

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 600 width
> 600 supersample 3

> hide #!14.6 models

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 600 width
> 600 supersample 3

> hide #!14.7 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 600 width
> 600 supersample 3

> hide #!14.8 models

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 600 width
> 600 supersample 3

> hide #!14.9 models

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 600 width
> 600 supersample 3

> hide #!22.1 models

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 600 width
> 600 supersample 3

> hide #!22.2 models

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 600 width
> 600 supersample 3

> hide #!22.3 models

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 600 width
> 600 supersample 3

> hide #!22.4 models

> graphics quality 1

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> graphics quality 3

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 200 width 200
> supersample 3

> hide #!1.7 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 200 width 200
> supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 200 width 200
> supersample 3

> hide #!1.11 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 200 width
> 200 supersample 3

> hide #!6.10 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 200 width
> 200 supersample 3

> hide #!6.1 models

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 200 width
> 200 supersample 3

> hide #!6.2 models

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 200 width
> 200 supersample 3

> hide #!6.3 models

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 200 width
> 200 supersample 3

> hide #!6.4 models

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 200 width
> 200 supersample 3

> hide #!6.5 models

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 200 width
> 200 supersample 3

> hide #!6.6 models

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 200 width
> 200 supersample 3

> hide #!6.7 models

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 200 width
> 200 supersample 3

> hide #!6.8 models

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 200 width
> 200 supersample 3

> hide #!6.9 models

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 200 width
> 200 supersample 3

> hide #!14.10 models

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 200 width
> 200 supersample 3

> hide #!14.1 models

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 200 width
> 200 supersample 3

> hide #!14.2 models

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 200 width
> 200 supersample 3

> hide #!14.3 models

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 200 width
> 200 supersample 3

> hide #!14.4 models

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 200 width
> 200 supersample 3

> hide #!14.5 models

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 200 width
> 200 supersample 3

> hide #!14.6 models

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 200 width
> 200 supersample 3

> hide #!14.7 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 200 width
> 200 supersample 3

> hide #!14.8 models

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 200 width
> 200 supersample 3

> hide #!14.9 models

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 200 width
> 200 supersample 3

> hide #!22.1 models

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 200 width
> 200 supersample 3

> hide #!22.2 models

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 200 width
> 200 supersample 3

> hide #!22.3 models

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 200 width
> 200 supersample 3

> hide #!22.4 models

> graphics quality 1

> graphics silhouettes false

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 200 width 200
> supersample 3

> hide #!1.7 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 200 width 200
> supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 200 width 200
> supersample 3

> hide #!1.11 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 200 width
> 200 supersample 3

> hide #!6.10 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 200 width
> 200 supersample 3

> hide #!6.1 models

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 200 width
> 200 supersample 3

> hide #!6.2 models

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 200 width
> 200 supersample 3

> hide #!6.3 models

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 200 width
> 200 supersample 3

> hide #!6.4 models

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 200 width
> 200 supersample 3

> hide #!6.5 models

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 200 width
> 200 supersample 3

> hide #!6.6 models

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 200 width
> 200 supersample 3

> hide #!6.7 models

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 200 width
> 200 supersample 3

> hide #!6.8 models

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 200 width
> 200 supersample 3

> hide #!6.9 models

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 200 width
> 200 supersample 3

> hide #!14.10 models

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 200 width
> 200 supersample 3

> hide #!14.1 models

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 200 width
> 200 supersample 3

> hide #!14.2 models

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 200 width
> 200 supersample 3

> hide #!14.3 models

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 200 width
> 200 supersample 3

> hide #!14.4 models

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 200 width
> 200 supersample 3

> hide #!14.5 models

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 200 width
> 200 supersample 3

> hide #!14.6 models

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 200 width
> 200 supersample 3

> hide #!14.7 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 200 width
> 200 supersample 3

> hide #!14.8 models

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 200 width
> 200 supersample 3

> hide #!14.9 models

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 200 width
> 200 supersample 3

> hide #!22.1 models

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 200 width
> 200 supersample 3

> hide #!22.2 models

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 200 width
> 200 supersample 3

> hide #!22.3 models

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 200 width
> 200 supersample 3

> hide #!22.4 models

> graphics silhouettes true

> graphics silhouettes true width 0.5

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 200 width 200
> supersample 3

> hide #!1.7 models

> graphics silhouettes true width 1 color gray

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 200 width 200
> supersample 3

> hide #!1.7 models

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8cgk.png height 200 width 200
> supersample 3

> hide #!1.7 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7bv8.png height 200 width 200
> supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_7o1a.png height 200 width 200
> supersample 3

> hide #!1.11 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J83_cl0.png height 200 width
> 200 supersample 3

> hide #!6.10 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J84_cl1.png height 200 width
> 200 supersample 3

> hide #!6.1 models

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J85_cl2.png height 200 width
> 200 supersample 3

> hide #!6.2 models

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J86_cl3.png height 200 width
> 200 supersample 3

> hide #!6.3 models

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J87_cl4.png height 200 width
> 200 supersample 3

> hide #!6.4 models

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J88_cl5.png height 200 width
> 200 supersample 3

> hide #!6.5 models

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J89_cl6.png height 200 width
> 200 supersample 3

> hide #!6.6 models

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J90_cl7.png height 200 width
> 200 supersample 3

> hide #!6.7 models

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J91_cl8.png height 200 width
> 200 supersample 3

> hide #!6.8 models

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d9_J92_cl9.png height 200 width
> 200 supersample 3

> hide #!6.9 models

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J53_c0.png height 200 width
> 200 supersample 3

> hide #!14.10 models

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J54_c1.png height 200 width
> 200 supersample 3

> hide #!14.1 models

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J55_c2.png height 200 width
> 200 supersample 3

> hide #!14.2 models

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J56_c3.png height 200 width
> 200 supersample 3

> hide #!14.3 models

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J57_c4.png height 200 width
> 200 supersample 3

> hide #!14.4 models

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J58_c5.png height 200 width
> 200 supersample 3

> hide #!14.5 models

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

20 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J59_c6.png height 200 width
> 200 supersample 3

> hide #!14.6 models

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J60_c7.png height 200 width
> 200 supersample 3

> hide #!14.7 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J61_c8.png height 200 width
> 200 supersample 3

> hide #!14.8 models

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_d10_J62_c9.png height 200 width
> 200 supersample 3

> hide #!14.9 models

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J111_ape.png height 200 width
> 200 supersample 3

> hide #!22.1 models

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J112_ap.png height 200 width
> 200 supersample 3

> hide #!22.2 models

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J113_pe.png height 200 width
> 200 supersample 3

> hide #!22.3 models

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_dE_J124_e.png height 200 width
> 200 supersample 3

> hide #!22.4 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.4 models

> show #!4.4 models

> volume #12.4 level 0.41

> volume #12.4 level 0.42

> volume #4.4 level 0.45

> volume #4.4 level 0.4

> show #!6.2 models

> hide #!6.4 models

> hide #!4.4 models

> show #!4.4 models

> hide #!4.4 models

> view A_loop

> view A_loopview A_loop

Expected an objects specifier or a view name or a keyword  

> view A_loop

> windowsize 600 600

> view A_loop

> windowsize 600 600

> view A_loop

> windowsize 600 600

> view A_loop

> hide #!6.2 models

> show #!1.2 models

> view A_loop

> view name tmp

> windowsize 600 600

> view A_loop

> windowsize 600 800

> windowsize 600 600

> windowsize 1000 600

> view A_loop

> view tmp

> view name A_loop_A2602

> view matrix

view matrix camera
-0.72535,0.6179,-0.30342,114.54,0.60204,0.35569,-0.71487,124.22,-0.33379,-0.7012,-0.63,99.88  
view matrix models
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 
  

> clip list

Using 2 clip planes:  
near offset -13.211, axis 0.303,0.715,0.630, point 133.5,168.9,139.3)  
far offset 8.7722, axis -0.303,-0.715,-0.630, point 140.2,184.6,153.1)  

> show #1.2/a

> view A_loop_A2602

> hide #!1.2 models

> show #!2.4 models

> hide #!2.4 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.1 models

> show #6.1/a

> show #6.1/a,v

> view A_loop_A2602

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

"#6.1/a:1955,2549-2559,2581-2584/Y:73-76 ": contains extra trailing text  

> name to_show #6.1/a:1955,2549-2559,2581-2584/Y:73-76

> hide #6.1

> show to_show

> show #6.1/a:2601

> show #6.1/a:2602

> hide #6.1/a:2601

> show #6.1/v:2-5

> view A_loop_2602

Expected an objects specifier or a view name or a keyword  

> view A_loop_2601

Expected an objects specifier or a view name or a keyword  

> view A_loop_A2602

> hide #6.1/a:2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> color #6.1/a:2602 olive

> color #6.1/a:2602 green

> color #6.1/a:2602 blue

> color #6.1/a:2602 cyan

[Repeated 1 time(s)]

> color #6.1/v:3 magenta

> view A_loop_A2602

> hide #6.1/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> view name tmp

> hide #!6.1 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> color #1.2/a:2602 cyan

> color #1.2/v:3 magenta

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> color #1.2/a:2602 cyan

> color #1.2/v:3 magenta

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

> hide #!1.2 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> windowsize 600 600

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> view A_loop

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> graphics silhouettes false

> graphics silhouettes true

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> graphics silhouettes true color black

> graphics quality 6

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584/Y:73-76

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 600 width 600
> supersample 3

> hide #!1.2 models

> show #!6.1 models

> windowsize 1000 600

> view matrix camera
> -0.72535,0.6179,-0.30342,114.54,0.60204,0.35569,-0.71487,124.22,-0.33379,-0.7012,-0.63,99.88

> clip near -13.211 far 8.7722

[Repeated 5 time(s)]

> clip front -13.211 back 8.7722

[Repeated 1 time(s)]

> clip near -13.211 far 8.7722

> clip front -13.211 back 8.7722

[Repeated 1 time(s)]

> clip list

Using 4 clip planes:  
near offset -131.38, axis 0.303,0.715,0.630, point 96.59,81.93,62.61)  
far offset 44.492, axis -0.303,-0.715,-0.630, point 149.9,207.7,173.4)  
front offset -52.844, axis 0.303,0.715,0.630, point 125.8,134.8,113.2)  
back offset 35.089, axis -0.303,-0.715,-0.630, point 152.5,197.6,168.6)  

> clip near off

> clip far off

> clip list

Using 2 clip planes:  
front offset -52.844, axis 0.303,0.715,0.630, point 125.8,134.8,113.2)  
back offset 35.089, axis -0.303,-0.715,-0.630, point 152.5,197.6,168.6)  

> clip off

> ui tool show "Side View"

> clip front -13.211 back 8.7722

[Repeated 2 time(s)]

> clip list

Using 4 clip planes:  
front offset -39.633, axis 0.303,0.715,0.630, point 129.8,144.2,121.5)  
back offset 26.317, axis -0.303,-0.715,-0.630, point 149.9,191.4,163.1)  
near offset -6.3081, axis 0.303,0.715,0.630, point 134.5,171.4,141.4)  
far offset 7.3562, axis -0.303,-0.715,-0.630, point 138.7,181.1,150)  

> clip off

> view A_loop_A2602

> view list

Named views: 76A_sandwich, A_loop, A_loop_A2602, del9_PTC_overview,
del9_overview, ssu_rotation, tmp  

> clip list

Using 2 clip planes:  
near offset -9.7198, axis 0.303,0.715,0.630, point 133.5,168.9,139.3)  
far offset 12.264, axis -0.303,-0.715,-0.630, point 140.2,184.6,153.1)  

> clip near offset -9.7198, axis 0.303,0.715,0.630, point 133.5,168.9,139.3

Invalid "near" argument: Expected 'off' or a number  

> clip near -9.7198 axis 0.303,0.715,0.630 point 133.5,168.9,139.3

Expected a keyword  

> clip near -9.7198 axis 0.303,0.715,0.630 position 133.5,168.9,139.3

[Repeated 3 time(s)]

> clip far 12.264 axis -0.303,-0.715,-0.630 position 140.2,184.6,153.1

> view A_loop_A2602

> clip list

Using 2 clip planes:  
near offset -9.7198, axis 0.303,0.715,0.630, point 133.5,168.9,139.3)  
far offset 12.264, axis -0.303,-0.715,-0.630, point 140.2,184.6,153.1)  

> clip near -9.7198 axis 0.303,0.715,0.630 position 133.5,168.9,139.3

> clip far 12.264 axis -0.303,-0.715,-0.630 position 140.2,184.6,153.1

> clip far 12.264 axis -0.303,-0.715,-0.630 position 140.2,184.6,153.1

> clip near -9.7198 axis 0.303,0.715,0.630 position 133.5,168.9,139.3

> clip list

Using 2 clip planes:  
near offset -19.413, axis 0.303,0.715,0.630, point 130.6,162,133.2)  
far offset 24.521, axis -0.303,-0.715,-0.630, point 143.9,193.4,160.8)  

> select down

Nothing selected  

> select down

Nothing selected  

> select down

Nothing selected  

> clip near -9.7198 axis 0.303,0.715,0.630 position 133.5,168.9,139.3

> clip near -9.7198 axis 0.303,0.715,0.630 position 133.5,168.9,139.3

> clip list

Using 2 clip planes:  
near offset -19.413, axis 0.303,0.715,0.630, point 130.6,162,133.2)  
far offset 24.521, axis -0.303,-0.715,-0.630, point 143.9,193.4,160.8)  

> view A_loop_A2602

> view matrix

view matrix camera
-0.72535,0.6179,-0.30342,114.54,0.60204,0.35569,-0.71487,124.22,-0.33379,-0.7012,-0.63,99.88  
view matrix models
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 
  

> clip list

Using 2 clip planes:  
near offset -9.7198, axis 0.303,0.715,0.630, point 133.5,168.9,139.3)  
far offset 12.264, axis -0.303,-0.715,-0.630, point 140.2,184.6,153.1)  

> volume style mesh

> nucleotides atoms

> windowsize 1000 600

> lighting simple

> graphics silhouettes true color black

> view A_loop_A2602

> hide #!6.1 models

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> color #1.2/a:2602 cyan

> color #1.2/v:3 magenta

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_8emm.png height 1000
> width 600 supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

Directory "/Users/dalar193/Desktop/A_loop" does not exist  

> hide #!1.2 models

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> color #1.2/a:2602 cyan

> color #1.2/v:3 magenta

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_8emm.png height 600
> width 1000 supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop/A_loop_8emm.png height 200 width 200
> supersample 3

Directory "/Users/dalar193/Desktop/A_loop" does not exist  

> hide #!1.2 models

> volume style mesh

> nucleotides atoms

> windowsize 1000 600

> lighting simple

> graphics silhouettes true color black

> view A_loop_A2602

> show #!1.2 models

> hide #1.2

> ~cartoon #1.2

> color #1.2 white

> color #1.2/a:2552 pale violet red

> color #1.2/a:2553 khaki

> color #1.2/a:2554 green yellow

> color #1.2/a:2555 aquamarine

> color #1.2/a:2556 steel blue

> color #1.2/Y orchid

> color #1.2/a:1955 pale green

> color #1.2/a:2581 teal

> color #1.2/a:2582 royal blue

> color #1.2/a:2583 medium purple

> color #1.2 white target c

> color #1.2/a:2602 cyan

> color #1.2/v:3 magenta

> name to_cartoon #1.2/a:2549-2559

> name to_show #1.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_8emm.png height 600
> width 1000 supersample 3

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_8emm.png height 600
> width 1000 supersample 3

> hide #!1.2 models

> show #!1.7 models

> hide #1.7

> ~cartoon #1.7

> color #1.7 white

> color #1.7/a:2552 pale violet red

> color #1.7/a:2553 khaki

> color #1.7/a:2554 green yellow

> color #1.7/a:2555 aquamarine

> color #1.7/a:2556 steel blue

> color #1.7/Y orchid

> color #1.7/a:1955 pale green

> color #1.7/a:2581 teal

> color #1.7/a:2582 royal blue

> color #1.7/a:2583 medium purple

> color #1.7 white target c

> color #1.7/a:2602 cyan

> color #1.7/v:3 magenta

> name to_cartoon #1.7/a:2549-2559

> name to_show #1.7/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.7/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_8cgk.png height 600
> width 1000 supersample 3

> hide #!1.7 models

> show #!1.9 models

> hide #1.9

> ~cartoon #1.9

> color #1.9 white

> color #1.9/A:2552 pale violet red

> color #1.9/A:2553 khaki

> color #1.9/A:2554 green yellow

> color #1.9/A:2555 aquamarine

> color #1.9/A:2556 steel blue

> color #1.9/Y orchid

> color #1.9/A:1955 pale green

> color #1.9/A:2581 teal

> color #1.9/A:2582 royal blue

> color #1.9/A:2583 medium purple

> color #1.9 white target c

> color #1.9/A:2602 cyan

> color #1.9/v:3 magenta

> name to_cartoon #1.9/A:2549-2559

> name to_show #1.9/A:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.9/A:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_7bv8.png height 600
> width 1000 supersample 3

> hide #!1.9 models

> show #!1.11 models

> hide #1.11

> ~cartoon #1.11

> color #1.11 white

> color #1.11/BA:2552 pale violet red

> color #1.11/BA:2553 khaki

> color #1.11/BA:2554 green yellow

> color #1.11/BA:2555 aquamarine

> color #1.11/BA:2556 steel blue

> color #1.11/Y orchid

> color #1.11/BA:1955 pale green

> color #1.11/BA:2581 teal

> color #1.11/BA:2582 royal blue

> color #1.11/BA:2583 medium purple

> color #1.11 white target c

> color #1.11/BA:2602 cyan

> color #1.11/v:3 magenta

> name to_cartoon #1.11/BA:2549-2559

> name to_show #1.11/BA:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #1.11/BA:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_7o1a.png height 600
> width 1000 supersample 3

> hide #!1.11 models

> show #!6.10 models

> hide #6.10

> ~cartoon #6.10

> color #6.10 white

> color #6.10/a:2552 pale violet red

> color #6.10/a:2553 khaki

> color #6.10/a:2554 green yellow

> color #6.10/a:2555 aquamarine

> color #6.10/a:2556 steel blue

> color #6.10/Y orchid

> color #6.10/a:1955 pale green

> color #6.10/a:2581 teal

> color #6.10/a:2582 royal blue

> color #6.10/a:2583 medium purple

> color #6.10 white target c

> color #6.10/a:2602 cyan

> color #6.10/v:3 magenta

> name to_cartoon #6.10/a:2549-2559

> name to_show #6.10/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.10/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J83_cl0.png height
> 600 width 1000 supersample 3

> hide #!6.10 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> color #6.1 white

> color #6.1/a:2552 pale violet red

> color #6.1/a:2553 khaki

> color #6.1/a:2554 green yellow

> color #6.1/a:2555 aquamarine

> color #6.1/a:2556 steel blue

> color #6.1/Y orchid

> color #6.1/a:1955 pale green

> color #6.1/a:2581 teal

> color #6.1/a:2582 royal blue

> color #6.1/a:2583 medium purple

> color #6.1 white target c

> color #6.1/a:2602 cyan

> color #6.1/v:3 magenta

> name to_cartoon #6.1/a:2549-2559

> name to_show #6.1/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.1/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J84_cl1.png height
> 600 width 1000 supersample 3

> hide #!6.1 models

> show #!6.2 models

> hide #6.2

> ~cartoon #6.2

> color #6.2 white

> color #6.2/a:2552 pale violet red

> color #6.2/a:2553 khaki

> color #6.2/a:2554 green yellow

> color #6.2/a:2555 aquamarine

> color #6.2/a:2556 steel blue

> color #6.2/Y orchid

> color #6.2/a:1955 pale green

> color #6.2/a:2581 teal

> color #6.2/a:2582 royal blue

> color #6.2/a:2583 medium purple

> color #6.2 white target c

> color #6.2/a:2602 cyan

> color #6.2/v:3 magenta

> name to_cartoon #6.2/a:2549-2559

> name to_show #6.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J85_cl2.png height
> 600 width 1000 supersample 3

> hide #!6.2 models

> show #!6.3 models

> hide #6.3

> ~cartoon #6.3

> color #6.3 white

> color #6.3/a:2552 pale violet red

> color #6.3/a:2553 khaki

> color #6.3/a:2554 green yellow

> color #6.3/a:2555 aquamarine

> color #6.3/a:2556 steel blue

> color #6.3/Y orchid

> color #6.3/a:1955 pale green

> color #6.3/a:2581 teal

> color #6.3/a:2582 royal blue

> color #6.3/a:2583 medium purple

> color #6.3 white target c

> color #6.3/a:2602 cyan

> color #6.3/v:3 magenta

> name to_cartoon #6.3/a:2549-2559

> name to_show #6.3/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.3/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J86_cl3.png height
> 600 width 1000 supersample 3

> hide #!6.3 models

> show #!6.4 models

> hide #6.4

> ~cartoon #6.4

> color #6.4 white

> color #6.4/a:2552 pale violet red

> color #6.4/a:2553 khaki

> color #6.4/a:2554 green yellow

> color #6.4/a:2555 aquamarine

> color #6.4/a:2556 steel blue

> color #6.4/Y orchid

> color #6.4/a:1955 pale green

> color #6.4/a:2581 teal

> color #6.4/a:2582 royal blue

> color #6.4/a:2583 medium purple

> color #6.4 white target c

> color #6.4/a:2602 cyan

> color #6.4/v:3 magenta

> name to_cartoon #6.4/a:2549-2559

> name to_show #6.4/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.4/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J87_cl4.png height
> 600 width 1000 supersample 3

> hide #!6.4 models

> show #!6.5 models

> hide #6.5

> ~cartoon #6.5

> color #6.5 white

> color #6.5/a:2552 pale violet red

> color #6.5/a:2553 khaki

> color #6.5/a:2554 green yellow

> color #6.5/a:2555 aquamarine

> color #6.5/a:2556 steel blue

> color #6.5/Y orchid

> color #6.5/a:1955 pale green

> color #6.5/a:2581 teal

> color #6.5/a:2582 royal blue

> color #6.5/a:2583 medium purple

> color #6.5 white target c

> color #6.5/a:2602 cyan

> color #6.5/v:3 magenta

> name to_cartoon #6.5/a:2549-2559

> name to_show #6.5/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.5/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J88_cl5.png height
> 600 width 1000 supersample 3

> hide #!6.5 models

> show #!6.6 models

> hide #6.6

> ~cartoon #6.6

> color #6.6 white

> color #6.6/a:2552 pale violet red

> color #6.6/a:2553 khaki

> color #6.6/a:2554 green yellow

> color #6.6/a:2555 aquamarine

> color #6.6/a:2556 steel blue

> color #6.6/Y orchid

> color #6.6/a:1955 pale green

> color #6.6/a:2581 teal

> color #6.6/a:2582 royal blue

> color #6.6/a:2583 medium purple

> color #6.6 white target c

> color #6.6/a:2602 cyan

> color #6.6/v:3 magenta

> name to_cartoon #6.6/a:2549-2559

> name to_show #6.6/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.6/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J89_cl6.png height
> 600 width 1000 supersample 3

> hide #!6.6 models

> show #!6.7 models

> hide #6.7

> ~cartoon #6.7

> color #6.7 white

> color #6.7/a:2552 pale violet red

> color #6.7/a:2553 khaki

> color #6.7/a:2554 green yellow

> color #6.7/a:2555 aquamarine

> color #6.7/a:2556 steel blue

> color #6.7/Y orchid

> color #6.7/a:1955 pale green

> color #6.7/a:2581 teal

> color #6.7/a:2582 royal blue

> color #6.7/a:2583 medium purple

> color #6.7 white target c

> color #6.7/a:2602 cyan

> color #6.7/v:3 magenta

> name to_cartoon #6.7/a:2549-2559

> name to_show #6.7/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.7/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

23 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J90_cl7.png height
> 600 width 1000 supersample 3

> hide #!6.7 models

> show #!6.8 models

> hide #6.8

> ~cartoon #6.8

> color #6.8 white

> color #6.8/a:2552 pale violet red

> color #6.8/a:2553 khaki

> color #6.8/a:2554 green yellow

> color #6.8/a:2555 aquamarine

> color #6.8/a:2556 steel blue

> color #6.8/Y orchid

> color #6.8/a:1955 pale green

> color #6.8/a:2581 teal

> color #6.8/a:2582 royal blue

> color #6.8/a:2583 medium purple

> color #6.8 white target c

> color #6.8/a:2602 cyan

> color #6.8/v:3 magenta

> name to_cartoon #6.8/a:2549-2559

> name to_show #6.8/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.8/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

15 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J91_cl8.png height
> 600 width 1000 supersample 3

> hide #!6.8 models

> show #!6.9 models

> hide #6.9

> ~cartoon #6.9

> color #6.9 white

> color #6.9/a:2552 pale violet red

> color #6.9/a:2553 khaki

> color #6.9/a:2554 green yellow

> color #6.9/a:2555 aquamarine

> color #6.9/a:2556 steel blue

> color #6.9/Y orchid

> color #6.9/a:1955 pale green

> color #6.9/a:2581 teal

> color #6.9/a:2582 royal blue

> color #6.9/a:2583 medium purple

> color #6.9 white target c

> color #6.9/a:2602 cyan

> color #6.9/v:3 magenta

> name to_cartoon #6.9/a:2549-2559

> name to_show #6.9/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #6.9/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

19 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d9_J92_cl9.png height
> 600 width 1000 supersample 3

> hide #!6.9 models

> show #!14.10 models

> hide #14.10

> ~cartoon #14.10

> color #14.10 white

> color #14.10/a:2552 pale violet red

> color #14.10/a:2553 khaki

> color #14.10/a:2554 green yellow

> color #14.10/a:2555 aquamarine

> color #14.10/a:2556 steel blue

> color #14.10/Y orchid

> color #14.10/a:1955 pale green

> color #14.10/a:2581 teal

> color #14.10/a:2582 royal blue

> color #14.10/a:2583 medium purple

> color #14.10 white target c

> color #14.10/a:2602 cyan

> color #14.10/v:3 magenta

> name to_cartoon #14.10/a:2549-2559

> name to_show #14.10/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.10/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J53_c0.png height
> 600 width 1000 supersample 3

> hide #!14.10 models

> show #!14.1 models

> hide #14.1

> ~cartoon #14.1

> color #14.1 white

> color #14.1/a:2552 pale violet red

> color #14.1/a:2553 khaki

> color #14.1/a:2554 green yellow

> color #14.1/a:2555 aquamarine

> color #14.1/a:2556 steel blue

> color #14.1/Y orchid

> color #14.1/a:1955 pale green

> color #14.1/a:2581 teal

> color #14.1/a:2582 royal blue

> color #14.1/a:2583 medium purple

> color #14.1 white target c

> color #14.1/a:2602 cyan

> color #14.1/v:3 magenta

> name to_cartoon #14.1/a:2549-2559

> name to_show #14.1/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.1/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J54_c1.png height
> 600 width 1000 supersample 3

> hide #!14.1 models

> show #!14.2 models

> hide #14.2

> ~cartoon #14.2

> color #14.2 white

> color #14.2/a:2552 pale violet red

> color #14.2/a:2553 khaki

> color #14.2/a:2554 green yellow

> color #14.2/a:2555 aquamarine

> color #14.2/a:2556 steel blue

> color #14.2/Y orchid

> color #14.2/a:1955 pale green

> color #14.2/a:2581 teal

> color #14.2/a:2582 royal blue

> color #14.2/a:2583 medium purple

> color #14.2 white target c

> color #14.2/a:2602 cyan

> color #14.2/v:3 magenta

> name to_cartoon #14.2/a:2549-2559

> name to_show #14.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J55_c2.png height
> 600 width 1000 supersample 3

> hide #!14.2 models

> show #!14.3 models

> hide #14.3

> ~cartoon #14.3

> color #14.3 white

> color #14.3/a:2552 pale violet red

> color #14.3/a:2553 khaki

> color #14.3/a:2554 green yellow

> color #14.3/a:2555 aquamarine

> color #14.3/a:2556 steel blue

> color #14.3/Y orchid

> color #14.3/a:1955 pale green

> color #14.3/a:2581 teal

> color #14.3/a:2582 royal blue

> color #14.3/a:2583 medium purple

> color #14.3 white target c

> color #14.3/a:2602 cyan

> color #14.3/v:3 magenta

> name to_cartoon #14.3/a:2549-2559

> name to_show #14.3/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.3/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

27 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J56_c3.png height
> 600 width 1000 supersample 3

> hide #!14.3 models

> show #!14.4 models

> hide #14.4

> ~cartoon #14.4

> color #14.4 white

> color #14.4/a:2552 pale violet red

> color #14.4/a:2553 khaki

> color #14.4/a:2554 green yellow

> color #14.4/a:2555 aquamarine

> color #14.4/a:2556 steel blue

> color #14.4/Y orchid

> color #14.4/a:1955 pale green

> color #14.4/a:2581 teal

> color #14.4/a:2582 royal blue

> color #14.4/a:2583 medium purple

> color #14.4 white target c

> color #14.4/a:2602 cyan

> color #14.4/v:3 magenta

> name to_cartoon #14.4/a:2549-2559

> name to_show #14.4/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.4/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J57_c4.png height
> 600 width 1000 supersample 3

> hide #!14.4 models

> show #!14.5 models

> hide #14.5

> ~cartoon #14.5

> color #14.5 white

> color #14.5/a:2552 pale violet red

> color #14.5/a:2553 khaki

> color #14.5/a:2554 green yellow

> color #14.5/a:2555 aquamarine

> color #14.5/a:2556 steel blue

> color #14.5/Y orchid

> color #14.5/a:1955 pale green

> color #14.5/a:2581 teal

> color #14.5/a:2582 royal blue

> color #14.5/a:2583 medium purple

> color #14.5 white target c

> color #14.5/a:2602 cyan

> color #14.5/v:3 magenta

> name to_cartoon #14.5/a:2549-2559

> name to_show #14.5/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.5/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

17 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J58_c5.png height
> 600 width 1000 supersample 3

> hide #!14.5 models

> show #!14.6 models

> hide #14.6

> ~cartoon #14.6

> color #14.6 white

> color #14.6/a:2552 pale violet red

> color #14.6/a:2553 khaki

> color #14.6/a:2554 green yellow

> color #14.6/a:2555 aquamarine

> color #14.6/a:2556 steel blue

> color #14.6/Y orchid

> color #14.6/a:1955 pale green

> color #14.6/a:2581 teal

> color #14.6/a:2582 royal blue

> color #14.6/a:2583 medium purple

> color #14.6 white target c

> color #14.6/a:2602 cyan

> color #14.6/v:3 magenta

> name to_cartoon #14.6/a:2549-2559

> name to_show #14.6/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.6/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J59_c6.png height
> 600 width 1000 supersample 3

> hide #!14.6 models

> show #!14.7 models

> hide #14.7

> ~cartoon #14.7

> color #14.7 white

> color #14.7/a:2552 pale violet red

> color #14.7/a:2553 khaki

> color #14.7/a:2554 green yellow

> color #14.7/a:2555 aquamarine

> color #14.7/a:2556 steel blue

> color #14.7/Y orchid

> color #14.7/a:1955 pale green

> color #14.7/a:2581 teal

> color #14.7/a:2582 royal blue

> color #14.7/a:2583 medium purple

> color #14.7 white target c

> color #14.7/a:2602 cyan

> color #14.7/v:3 magenta

> name to_cartoon #14.7/a:2549-2559

> name to_show #14.7/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.7/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

22 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J60_c7.png height
> 600 width 1000 supersample 3

> hide #!14.7 models

> show #!14.8 models

> hide #14.8

> ~cartoon #14.8

> color #14.8 white

> color #14.8/a:2552 pale violet red

> color #14.8/a:2553 khaki

> color #14.8/a:2554 green yellow

> color #14.8/a:2555 aquamarine

> color #14.8/a:2556 steel blue

> color #14.8/Y orchid

> color #14.8/a:1955 pale green

> color #14.8/a:2581 teal

> color #14.8/a:2582 royal blue

> color #14.8/a:2583 medium purple

> color #14.8 white target c

> color #14.8/a:2602 cyan

> color #14.8/v:3 magenta

> name to_cartoon #14.8/a:2549-2559

> name to_show #14.8/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.8/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

21 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J61_c8.png height
> 600 width 1000 supersample 3

> hide #!14.8 models

> show #!14.9 models

> hide #14.9

> ~cartoon #14.9

> color #14.9 white

> color #14.9/a:2552 pale violet red

> color #14.9/a:2553 khaki

> color #14.9/a:2554 green yellow

> color #14.9/a:2555 aquamarine

> color #14.9/a:2556 steel blue

> color #14.9/Y orchid

> color #14.9/a:1955 pale green

> color #14.9/a:2581 teal

> color #14.9/a:2582 royal blue

> color #14.9/a:2583 medium purple

> color #14.9 white target c

> color #14.9/a:2602 cyan

> color #14.9/v:3 magenta

> name to_cartoon #14.9/a:2549-2559

> name to_show #14.9/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #14.9/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

30 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_d10_J62_c9.png height
> 600 width 1000 supersample 3

> hide #!14.9 models

> show #!22.1 models

> hide #22.1

> ~cartoon #22.1

> color #22.1 white

> color #22.1/a:2552 pale violet red

> color #22.1/a:2553 khaki

> color #22.1/a:2554 green yellow

> color #22.1/a:2555 aquamarine

> color #22.1/a:2556 steel blue

> color #22.1/Y orchid

> color #22.1/a:1955 pale green

> color #22.1/a:2581 teal

> color #22.1/a:2582 royal blue

> color #22.1/a:2583 medium purple

> color #22.1 white target c

> color #22.1/a:2602 cyan

> color #22.1/v:3 magenta

> name to_cartoon #22.1/a:2549-2559

> name to_show #22.1/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #22.1/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

24 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_dE_J111_ape.png
> height 600 width 1000 supersample 3

> hide #!22.1 models

> show #!22.2 models

> hide #22.2

> ~cartoon #22.2

> color #22.2 white

> color #22.2/a:2552 pale violet red

> color #22.2/a:2553 khaki

> color #22.2/a:2554 green yellow

> color #22.2/a:2555 aquamarine

> color #22.2/a:2556 steel blue

> color #22.2/Y orchid

> color #22.2/a:1955 pale green

> color #22.2/a:2581 teal

> color #22.2/a:2582 royal blue

> color #22.2/a:2583 medium purple

> color #22.2 white target c

> color #22.2/a:2602 cyan

> color #22.2/v:3 magenta

> name to_cartoon #22.2/a:2549-2559

> name to_show #22.2/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #22.2/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

25 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_dE_J112_ap.png height
> 600 width 1000 supersample 3

> hide #!22.2 models

> show #!22.3 models

> hide #22.3

> ~cartoon #22.3

> color #22.3 white

> color #22.3/a:2552 pale violet red

> color #22.3/a:2553 khaki

> color #22.3/a:2554 green yellow

> color #22.3/a:2555 aquamarine

> color #22.3/a:2556 steel blue

> color #22.3/Y orchid

> color #22.3/a:1955 pale green

> color #22.3/a:2581 teal

> color #22.3/a:2582 royal blue

> color #22.3/a:2583 medium purple

> color #22.3 white target c

> color #22.3/a:2602 cyan

> color #22.3/v:3 magenta

> name to_cartoon #22.3/a:2549-2559

> name to_show #22.3/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #22.3/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

16 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_dE_J113_pe.png height
> 600 width 1000 supersample 3

> hide #!22.3 models

> show #!22.4 models

> hide #22.4

> ~cartoon #22.4

> color #22.4 white

> color #22.4/a:2552 pale violet red

> color #22.4/a:2553 khaki

> color #22.4/a:2554 green yellow

> color #22.4/a:2555 aquamarine

> color #22.4/a:2556 steel blue

> color #22.4/Y orchid

> color #22.4/a:1955 pale green

> color #22.4/a:2581 teal

> color #22.4/a:2582 royal blue

> color #22.4/a:2583 medium purple

> color #22.4 white target c

> color #22.4/a:2602 cyan

> color #22.4/v:3 magenta

> name to_cartoon #22.4/a:2549-2559

> name to_show #22.4/a:1955,2549-2559,2581-2584,2602/Y:73-76/v:2-5

> cartoon to_cartoon

> show to_show

> hide #22.4/a:1955,2602@P,OP1,OP2,C5',O5',C4',O4',O3',C3',C2',O2'

> hbonds to_show restrict to_show color yellow

18 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_A2602/A_loop_A2602_dE_J124_e.png height
> 600 width 1000 supersample 3

> hide #!22.4 models

> graphics quality 1

> show #!14.9 models

> show #!14.8 models

> hide #!14.9 models

> show #!14.7 models

> hide #!14.8 models

> hide #!14.7 models

> show #!14.6 models

> hide #!14.6 models

> show #!14.5 models

> show #!14.4 models

> hide #!14.5 models

> show #!14.3 models

> hide #!14.4 models

> show #!14.2 models

> hide #!14.3 models

> show #!14.1 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.1 models

> hide #!14.2 models

> show #!14.10 models

> show #!14.9 models

> hide #!14.10 models

> hide #!14.9 models

> show #!14.10 models

> show #!12.10 models

> hide #!12.10 models

> show #!13.10 models

> hide #!13.10 models

> show #!13.10 models

> hide #!13.10 models

> show #!13.9 models

> hide #!14.10 models

> show #!14.9 models

> graphics silhouettes false

> show #14.9/a

> hide #!13.9 models

> show #!12.9 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!14.9 models

> hide #!12.9 models

> show #!1.1 models

> show #1.2/a

> hide #!1.1 models

> show #!14.9 models

> hide #!1.2 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delE50S_homogen_J36_0.70469Apix.mrc

Opened delE50S_homogen_J36_0.70469Apix.mrc as #7, grid size 391,421,391, pixel
0.705,0.705,0.705, shown at level 0.601, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps/delE50S_homogen_J36_0.70469Apix.mrc

Opened delE50S_homogen_J36_0.70469Apix.mrc as #8, grid size 391,421,391, pixel
0.705,0.705,0.705, shown at level 0.601, step 2, values float32  

> close #8

> hide #!7.1 models

> show #7.1 models

> hide #!7.1 models

> show #7.1 models

> hide #!7.1 models

> show #7.1 models

> volume #7 style mesh

> volume #7 step 1

> hide #!22 models

> hide #!21 models

> show #!21 models

> show #!20.1 models

> hide #!20.1 models

> show #!20.1 models

> hide #!20.1 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.1 models

> hide #!14.9 models

> show #!1.2 models

> hide #!1.2 models

> show #!14.1 models

> hide #!22.1 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.1 models

> hide #!22.1 models

> hide #!14.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.8 models

> hide #7.1 models

> show #7.1 models

> hide #!7 models

> show #!22.1 models

> hide #!22.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.2 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> hide #!14.2 models

> show #!1.9 models

> volume #1.8 level 0.08465

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!1.9 models

> show #!14.2 models

> hide #!14.3 models

> hide #!14.2 models

> show #!14.2 models

> show #!14.3 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!22 models

> show #!22 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.3 models

> hide #!1.9 models

> hide #!1.8 models

> show #!22.2 models

> hide #!22.2 models

> show #!22.2 models

> hide #!22.2 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.1 models

> hide #!22.1 models

> show #!22.4 models

> hide #!22.4 models

> show #!7 models

> volume #7 level 0.4061

> volume #7 level 0.3088

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> hide #!22.3 models

> show #!22.1 models

> show #!22.2 models

> hide #!22.2 models

> hide #!22.1 models

> show #!22.1 models

> show #!6.1 models

> hide #!22.1 models

> hide #!7 models

> show #!20.1 models

> show #!20.2 models

> hide #!20.1 models

> volume #20.2 level 0.15

> volume #20.2 level 0.22

> volume style mesh

> nucleotides atoms

> windowsize 600 600

> hide #!20.2 models

> hide #!6.1 models

> show #!1.2 models

> save /Users/dalar193/wd/deltaRibosomes/figure_with_maps.cxs includeMaps true

——— End of log from Fri Apr 19 16:41:09 2024 ———

opened ChimeraX session  

> hide #!1.2 models

> show #!4.6 models

> show #!7 models

> hide #!7 models

> close #7

> show #!6.6 models

> show #6.*

> color #6.*/Z purple

> hide #!6.6 models

> show #!6.4 models

> show #!4.4 models

> hide #!4.6 models

> show #!6.5 models

> hide #!6.4 models

> show #!4.5 models

> hide #!4.4 models

> show #!4.4 models

> hide #!4.5 models

> show #!4.5 models

> hide #!4.4 models

> show #!4.4 models

> hide #!4.5 models

> show #!6.4 models

> hide #!6.5 models

> show #!4.5 models

> hide #!4.4 models

> show #!4.4 models

> hide #!4.5 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.5 models

> hide #!4.4 models

> show #!4.5 models

> hide #!6.4 models

> hide #!4.5 models

> show #!4.10 models

> show #!6.10 models

> hide #!6.5 models

> hide #!6.10 models

> show #!6.6 models

> hide #!4.10 models

> show #!4.6 models

> volume #4.6 level 0.4

> volume #4.6 level 0.3

> hide #!4.6 models

> show #!4.4 models

> show #!6.4 models

> hide #!6.6 models

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-9.pdb

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9J87-coot-9.pdb #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> style #!7#!6.4 stick

Changed 20514 atom styles  

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J87_PTCclass4_0.7Apix.mrc

Opened delta9_NU_J87_PTCclass4_0.7Apix.mrc as #8, grid size 391,421,391, pixel
0.7,0.7,0.7, shown at level 0.888, step 2, values float32  

> hide #!4.4 models

> hide #!7 models

> show #!7 models

> volume #8 style mesh

> volume #8 step 1

> volume #8 level 0.5

> volume #8 level 0.4

> close session

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD28254_8emm.mrc
> id 1.1 name 8emm_map

Opened 8emm_map as #1, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0248, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8emm_LSQ-23S.pdb id
> 1.2 name 8emm

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8emm_LSQ-23S.pdb  
---  
warnings | PDB SEQRES record for chain B is incomplete. Ignoring input sequence records as basis for sequence.  
PDB SEQRES record for chain Y is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain Z is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 8emm #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD15793_8b0x_x0.9933446.mrc
> id 1.3 name 8b0x_map

Opened 8b0x_map as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.608, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8b0x_x0.9933445912387006_LSQ-23S.cif
> id 1.5 name 8b0x

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8b0x_x0.9933445912387006_LSQ-23S.cif  
---  
warnings | Skipping chem_comp category: Missing column 'type' on line 4126  
Unknown polymer entity '5' on line 4377  
Unknown polymer entity '6' on line 39619  
Unknown polymer entity '7' on line 41379  
Unknown polymer entity '8' on line 43019  
Unknown polymer entity '9' on line 44676  
48 messages similar to the above omitted  
Atom N1 is not in the residue template for MS6 /l:82  
Missing or incomplete sequence information. Inferred polymer connectivity.  
  
notes | Fetching CCD G7M from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/M/G7M/G7M.cif  
Fetching CCD 2MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/2MG/2MG.cif  
Fetching CCD 5MC from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/5MC/5MC.cif  
Fetching CCD 4OC from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/4OC/4OC.cif  
Fetching CCD UR3 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/3/UR3/UR3.cif  
Fetching CCD MA6 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/6/MA6/MA6.cif  
Fetching CCD MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/MG/MG.cif  
Fetching CCD K from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/K/K/K.cif  
Fetching CCD IAS from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/S/IAS/IAS.cif  
Fetching CCD D2T from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/D2T/D2T.cif  
Fetching CCD ZN from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/N/ZN/ZN.cif  
Fetching CCD 1MG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/1MG/1MG.cif  
Fetching CCD 5MU from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/5MU/5MU.cif  
Fetching CCD 6MZ from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/Z/6MZ/6MZ.cif  
Fetching CCD 3TD from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/D/3TD/3TD.cif  
Fetching CCD OMG from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/G/OMG/OMG.cif  
Fetching CCD H2U from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/H2U/H2U.cif  
Fetching CCD OMC from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/C/OMC/OMC.cif  
Fetching CCD 2MA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/2MA/2MA.cif  
Fetching CCD OMU from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/U/OMU/OMU.cif  
Fetching CCD MEQ from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/Q/MEQ/MEQ.cif  
Fetching CCD 4D4 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/4/4D4/4D4.cif  
Fetching CCD MS6 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/6/MS6/MS6.cif  
  
Chain information for 8b0x #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD16646_8cgk.mrc
> id 1.6 name 8cgk_map

Opened 8cgk_map as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0122, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8cgk_LSQ-23S.pdb id
> 1.7 name 8cgk

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8cgk_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AA1 4 PHE A 20 LYS A 25 0  
Start residue of secondary structure not found: SHEET 2 AA1 4 GLU A 7 SER A 13
-1  
Start residue of secondary structure not found: SHEET 3 AA1 4 GLN A 45 LYS A
53 -1  
Start residue of secondary structure not found: SHEET 4 AA1 4 GLU A 35 ASP A
40 -1  
Start residue of secondary structure not found: SHEET 1 AA2 3 LYS C 15 LYS C
16 0  
151 messages similar to the above omitted  
  
Chain information for 8cgk #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD30215_7bv8_x1.00083.mrc
> id 1.8 name 7bv8_map

Opened 7bv8_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.189, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/7bv8_x1.00083_LSQ-23S.pdb
> id 1.9 name 7bv8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/7bv8_x1.00083_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AE6 3 THR A 35 GLU A 39 0  
Start residue of secondary structure not found: SHEET 2 AE6 3 THR A 4 GLN A 9
-1  
Start residue of secondary structure not found: SHEET 3 AE6 3 VAL A 55 GLU A
58 -1  
Start residue of secondary structure not found: SHEET 1 AE7 2 LEU B 28 VAL B
30 0  
Start residue of secondary structure not found: SHEET 2 AE7 2 LYS B 37 LEU B
39 -1  
3 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 AE8 4 GLU C 35 PHE C 39
-1  
Start residue of secondary structure not found: SHEET 1 AE9 3 LYS E 15 LYS E
16 0  
Start residue of secondary structure not found: SHEET 2 AE9 3 PHE E 22 HIS E
24 -1  
Start residue of secondary structure not found: SHEET 3 AE9 3 ALA E 48 MET E
49 -1  
Start residue of secondary structure not found: SHEET 1 AF1 4 LYS F 2 VAL F 3
0  
Start residue of secondary structure not found: SHEET 2 AF1 4 GLN F 35 ARG F
36 1  
2 messages similar to the above omitted  
  
Chain information for 7bv8 #2  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
V | No description available  
W | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
  
78 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD12694_7o1a_x0.9952.mrc
> id 1.10 name 7o1a_map

Opened 7o1a_map as #2, grid size 391,421,391, pixel 0.705,0.705,0.705, shown
at level 0.0279, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/7o1a_x0.9952_LSQ-23S.pdb
> id 1.11 name 7o1a

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/7o1a_x0.9952_LSQ-23S.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 1 AA1 1 0 0 0  
PDB SEQRES record for chain A is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 7o1a #2  
---  
Chain | Description  
A | No description available  
AA | No description available  
AB | No description available  
AL | No description available  
AU | No description available  
B | No description available  
B0 | No description available  
B1 | No description available  
B2 | No description available  
B3 | No description available  
B4 | No description available  
B5 | No description available  
B7 | No description available  
B8 | No description available  
BA | No description available  
BD | No description available  
BM | No description available  
BU | No description available  
BV | No description available  
BW | No description available  
BX | No description available  
BY | No description available  
BZ | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
> noHOH-x0.9933445912387006A.pdb id 1.12 name d9c75noPTC

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
noHOH-x0.9933445912387006A.pdb  
---  
warnings | End residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l 125 1 17  
Start residue of secondary structure not found: SHEET 1 49 2 GLY l 37 ARG l 40
0  
Start residue of secondary structure not found: SHEET 2 49 2 LEU l 95 PRO l 98
-1  
End residue of secondary structure not found: SHEET 3 50 4 SER l 30 VAL l 36
-1 N LEU l 33 O TYR l 103  
Start residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l
102 -1 N LEU l 102 O LEU l 33  
End residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36 0  
Start residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l
133 -1 N LYS l 133 O SER l 30  
Cannot find LINK/SSBOND residue A (1784 )  
Cannot find LINK/SSBOND residue K (3123 )  
Cannot find LINK/SSBOND residue K (3129 )  
Cannot find LINK/SSBOND residue MG (3197 )  
Cannot find LINK/SSBOND residue MG (3220 )  
6 messages similar to the above omitted  
  
Chain information for d9c75noPTC #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> rename #1 references

> hide #!1.12 models

> show #!1.12 models

> hide #!1.11 models

> hide #!1.12 models

> hide #!1.10 models

> hide #!1.9 models

> hide #!1.8 models

> hide #!1.7 models

> hide #!1.6 models

> hide #!1.1-3,5 target m

> show #!1.5 models

> show #!1.3 models

> hide #!1.5 models

> show #!1.5 models

> hide #!1.5 models

> show #!1.5 models

> hide #!1.5 models

> hide #!1.3 models

> show #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> hide #!1.1 models

> show #!1.6 models

> show #!1.7 models

> hide #!1.7 models

> hide #!1.6 models

> show #!1.8 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.9 models

> hide #!1.9 models

> show #!1.10 models

> hide #!1.8 models

> show #!1.11 models

> hide #!1.11 models

> show #!1.11 models

> hide #!1.11 models

> show #!1.11 models

> hide #!1.10 models

> hide #!1.11 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD16530_8cam.mrc
> id 1.12 name 8cam_map

Opened 8cam_map as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0354, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8cam_fit_d9_j167_0.7Apix.cif
> id 1.13 name 8cam

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8cam_fit_d9_j167_0.7Apix.cif  
---  
notes | Fetching CCD 6O1 from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/1/6O1/6O1.cif  
Fetching CCD ACT from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/ACT/ACT.cif  
  
Chain information for 8cam #2  
---  
Chain | Description  
0 | Large ribosomal subunit protein bL33  
1 | Large ribosomal subunit protein bL34  
2 | Large ribosomal subunit protein bL35  
3 | Large ribosomal subunit protein bL36A  
a | 23S rRNA  
b | 5S rRNA  
c | Large ribosomal subunit protein uL2  
d | Large ribosomal subunit protein uL3  
e | Large ribosomal subunit protein uL4  
g | Large ribosomal subunit protein uL6  
h | Large ribosomal subunit protein bL9  
i | Large ribosomal subunit protein uL13  
j | Large ribosomal subunit protein uL14  
k | 50S ribosomal protein L15  
l | Large ribosomal subunit protein uL16  
m | Large ribosomal subunit protein bL17  
o | Large ribosomal subunit protein bL19  
p | Large ribosomal subunit protein bL20  
q | Large ribosomal subunit protein bL21  
r | Large ribosomal subunit protein uL22  
s | Large ribosomal subunit protein uL23  
t | Large ribosomal subunit protein uL24  
u | 50S ribosomal protein L25  
v | Large ribosomal subunit protein bL27  
w | Large ribosomal subunit protein bL28  
x | Large ribosomal subunit protein uL29  
y | Large ribosomal subunit protein uL30  
z | Large ribosomal subunit protein bL32  
  

> close #1.13

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD16530_8cam.mrc
> id 1.12 name 8cam_map

Opened 8cam_map as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0354, step 2, values float32  

> close #1.12

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
> noHOH-x0.9933445912387006A.pdb id 1.12 name d9c75noPTC

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9j216-coot-75-noPTC-
noHOH-x0.9933445912387006A.pdb  
---  
warnings | End residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l 125 1 17  
Start residue of secondary structure not found: SHEET 1 49 2 GLY l 37 ARG l 40
0  
Start residue of secondary structure not found: SHEET 2 49 2 LEU l 95 PRO l 98
-1  
End residue of secondary structure not found: SHEET 3 50 4 SER l 30 VAL l 36
-1 N LEU l 33 O TYR l 103  
Start residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l
102 -1 N LEU l 102 O LEU l 33  
End residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36 0  
Start residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l
133 -1 N LYS l 133 O SER l 30  
Cannot find LINK/SSBOND residue A (1784 )  
Cannot find LINK/SSBOND residue K (3123 )  
Cannot find LINK/SSBOND residue K (3129 )  
Cannot find LINK/SSBOND residue MG (3197 )  
Cannot find LINK/SSBOND residue MG (3220 )  
6 messages similar to the above omitted  
  
Chain information for d9c75noPTC #2  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
5 | No description available  
A | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/EMD16530_8cam.mrc
> id 1.13 name 8cam_map

Opened 8cam_map as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0354, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8cam_fit_d9_j167_0.7Apix.cif
> id 1.14 name 8cam

Chain information for 8cam #2  
---  
Chain | Description  
0 | Large ribosomal subunit protein bL33  
1 | Large ribosomal subunit protein bL34  
2 | Large ribosomal subunit protein bL35  
3 | Large ribosomal subunit protein bL36A  
a | 23S rRNA  
b | 5S rRNA  
c | Large ribosomal subunit protein uL2  
d | Large ribosomal subunit protein uL3  
e | Large ribosomal subunit protein uL4  
g | Large ribosomal subunit protein uL6  
h | Large ribosomal subunit protein bL9  
i | Large ribosomal subunit protein uL13  
j | Large ribosomal subunit protein uL14  
k | 50S ribosomal protein L15  
l | Large ribosomal subunit protein uL16  
m | Large ribosomal subunit protein bL17  
o | Large ribosomal subunit protein bL19  
p | Large ribosomal subunit protein bL20  
q | Large ribosomal subunit protein bL21  
r | Large ribosomal subunit protein uL22  
s | Large ribosomal subunit protein uL23  
t | Large ribosomal subunit protein uL24  
u | 50S ribosomal protein L25  
v | Large ribosomal subunit protein bL27  
w | Large ribosomal subunit protein bL28  
x | Large ribosomal subunit protein uL29  
y | Large ribosomal subunit protein uL30  
z | Large ribosomal subunit protein bL32  
  

> hide #!1.12 models

> hide #!1.13 models

> hide #!1.14 models

> show #!1.14 models

> hide #!1.14 models

> show #!1.14 models

> hide #!1.14 models

> show #!1.13 models

> hide #!1.13 models

> show #!1.13 models

> show #!1.6 models

> hide #!1.6 models

> hide #!1.13 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job207_classAPE_0.7Apix.mrc
> id 2.1 name d9_ape

Opened d9_ape as #2, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0289, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job191_APe1_0.7Apix.mrc
> id 2.2 name d9_ape1

Opened d9_ape1 as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0292, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job192_ape2_0.7Apix.mrc
> id 2.3 name d9_ape2

Opened d9_ape2 as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0262, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job193_APe3_0.7Apix.mrc
> id 2.4 name d9_ape3

Opened d9_ape3 as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.028, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job188_PE_0.7Apix.mrc
> id 2.5 name d9_pe

Opened d9_pe as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0288, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job190_e_0.7Apix.mrc
> id 2.6 name d9_e

Opened d9_e as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0246, step 2, values float32  

> rename #2 d9

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job216_classAPE_0.7Apix.mrc
> id 3.1 name d9_ape

Opened d9_ape as #3, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0963, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job211_classAPE1_0.7Apix.mrc
> id 3.2 name d9_ape1

Opened d9_ape1 as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0936, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job212_classAPE2_0.7Apix.mrc
> id 3.3 name d9_ape2

Opened d9_ape2 as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0768, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job213_classAPE3_0.7Apix.mrc
> id 3.4 name d9_ape3

Opened d9_ape3 as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0872, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job208_classPE_0.7Apix.mrc
> id 3.5 name d9_pe

Opened d9_pe as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0944, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_localres_job210_classE_0.7Apix.mrc
> id 3.6 name d9_e

Opened d9_e as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0736, step 2, values float32  

> rename #3 d9-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J83_PTCclass0_0.7Apix.mrc
> id 4.10 name d9_J83_cl0

Opened d9_J83_cl0 as #4, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.884, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J84_PTCclass1_0.7Apix.mrc
> id 4.1 name d9_J84_cl1

Opened d9_J84_cl1 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.894, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J85_PTCclass2_0.7Apix.mrc
> id 4.2 name d9_J85_cl2

Opened d9_J85_cl2 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.885, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J86_PTCclass3_0.7Apix.mrc
> id 4.3 name d9_J86_cl3

Opened d9_J86_cl3 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.89, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J87_PTCclass4_0.7Apix.mrc
> id 4.4 name d9_J87_cl4

Opened d9_J87_cl4 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.888, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J88_PTCclass5_0.7Apix.mrc
> id 4.5 name d9_J88_cl5

Opened d9_J88_cl5 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.878, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J89_PTCclass6_0.7Apix.mrc
> id 4.6 name d9_J89_cl6

Opened d9_J89_cl6 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.887, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J90_PTCclass7_0.7Apix.mrc
> id 4.7 name d9_J90_cl7

Opened d9_J90_cl7 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.888, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J91_PTCclass8_0.7Apix.mrc
> id 4.8 name d9_J91_cl8

Opened d9_J91_cl8 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.919, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_NU_J92_PTCclass9_0.7Apix.mrc
> id 4.9 name d9_J92_cl9

Opened d9_J92_cl9 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.883, step 2, values float32  

> rename #4 d9-PTC

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J127_PTCclass0_0.7Apix.mrc
> id 5.10 name d9_J83_cl0

Opened d9_J83_cl0 as #5, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.33, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J128_PTCclass1_0.7Apix.mrc
> id 5.1 name d9_J84_cl1

Opened d9_J84_cl1 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.42, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J129_PTCclass2_0.7Apix.mrc
> id 5.2 name d9_J85_cl2

Opened d9_J85_cl2 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J130_PTCclass3_0.7Apix.mrc
> id 5.3 name d9_J86_cl3

Opened d9_J86_cl3 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J131_PTCclass4_0.7Apix.mrc
> id 5.4 name d9_J87_cl4

Opened d9_J87_cl4 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J132_PTCclass5_0.7Apix.mrc
> id 5.5 name d9_J88_cl5

Opened d9_J88_cl5 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.35, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J133_PTCclass6_0.7Apix.mrc
> id 5.6 name d9_J89_cl6

Opened d9_J89_cl6 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.38, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J134_PTCclass7_0.7Apix.mrc
> id 5.7 name d9_J90_cl7

Opened d9_J90_cl7 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.39, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J135_PTCclass8_0.7Apix.mrc
> id 5.8 name d9_J91_cl8

Opened d9_J91_cl8 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.41, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_LF_J136_PTCclass9_0.7Apix.mrc
> id 5.9 name d9_J92_cl9

Opened d9_J92_cl9 as #6, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.37, step 2, values float32  

> rename #5 d9-PTC-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J83-coot-9.pdb
> id 6.10 name d9_J83_cl0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J83-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J83_cl0 #6  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J84-coot-9.pdb
> id 6.1 name d9_J84_cl1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J84-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J84_cl1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J85-coot-9.pdb
> id 6.2 name d9_J85_cl2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J85-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J85_cl2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J86-coot-9.pdb
> id 6.3 name d9_J86_cl3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J86-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J86_cl3 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-9.pdb
> id 6.4 name d9_J87_cl4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J87-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J87_cl4 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J88-coot-9.pdb
> id 6.5 name d9_J88_cl5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J88-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J88_cl5 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J89-coot-9.pdb
> id 6.6 name d9_J89_cl6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J89-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J89_cl6 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J90-coot-9.pdb
> id 6.7 name d9_J90_cl7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J90-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J90_cl7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J91-coot-9.pdb
> id 6.8 name d9_J91_cl8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J91-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J91_cl8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J92-coot-9.pdb
> id 6.9 name d9_J92_cl9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta9/CS-J83-92/d9J92-coot-9.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d9_J92_cl9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #6 d9-PTC-models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_refine3d_job086_APE_0.7Apix.mrc
> id 10.1 name d10_ape

Opened d10_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0256, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_refine3d_job085_PE_0.7Apix.mrc
> id 10.2 name d10_pe

Opened d10_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0264, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_refine3d_job084_E_0.7Apix.mrc
> id 10.3 name d10_e

Opened d10_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.024, step 2, values float32  

> rename #10 d10

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_localres_job095_classAPE_0.7Apix.mrc
> id 11.1 name d10_ape

Opened d10_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0779, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_localres_job094_classPE_0.7Apix.mrc
> id 11.2 name d10_pe

Opened d10_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0807, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_localres_job093_classE_0.7Apix.mrc
> id 11.3 name d10_e

Opened d10_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at level
0.0701, step 2, values float32  

> rename #11 d10-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J53_PTCclass0_0.7Apix.mrc
> id 12.10 name d10_J53_c0

Opened d10_J53_c0 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.789, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J54_PTCclass1_0.7Apix.mrc
> id 12.1 name d10_J54_c1

Opened d10_J54_c1 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.796, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J55_PTCclass2_0.7Apix.mrc
> id 12.2 name d10_J55_c2

Opened d10_J55_c2 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.79, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J56_PTCclass3_0.7Apix.mrc
> id 12.3 name d10_J56_c3

Opened d10_J56_c3 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.797, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J57_PTCclass4_0.7Apix.mrc
> id 12.4 name d10_J57_c4

Opened d10_J57_c4 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J58_PTCclass5_0.7Apix.mrc
> id 12.5 name d10_J58_c5

Opened d10_J58_c5 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J59_PTCclass6_0.7Apix.mrc
> id 12.6 name d10_J59_c6

Opened d10_J59_c6 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.8, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J60_PTCclass7_0.7Apix.mrc
> id 12.7 name d10_J60_c7

Opened d10_J60_c7 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.799, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J61_PTCclass8_0.7Apix.mrc
> id 12.8 name d10_J61_c8

Opened d10_J61_c8 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.791, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_NU_J62_PTCclass9_0.7Apix.mrc
> id 12.9 name d10_J62_c9

Opened d10_J62_c9 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.795, step 2, values float32  

> rename #12 d10-PTC

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J96_PTCclass0_0.7Apix.mrc
> id 13.10 name d10_J53_c0

Opened d10_J53_c0 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.19, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J97_PTCclass1_0.7Apix.mrc
> id 13.1 name d10_J54_c1

Opened d10_J54_c1 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J98_PTCclass2_0.7Apix.mrc
> id 13.2 name d10_J55_c2

Opened d10_J55_c2 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J99_PTCclass3_0.7Apix.mrc
> id 13.3 name d10_J56_c3

Opened d10_J56_c3 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J100_PTCclass4_0.7Apix.mrc
> id 13.4 name d10_J57_c4

Opened d10_J57_c4 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.2, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J101_PTCclass5_0.7Apix.mrc
> id 13.5 name d10_J58_c5

Opened d10_J58_c5 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J102_PTCclass6_0.7Apix.mrc
> id 13.6 name d10_J59_c6

Opened d10_J59_c6 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J103_PTCclass7_0.7Apix.mrc
> id 13.7 name d10_J60_c7

Opened d10_J60_c7 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.24, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J104_PTCclass8_0.7Apix.mrc
> id 13.8 name d10_J61_c8

Opened d10_J61_c8 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.21, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_LF_J105_PTCclass9_0.7Apix.mrc
> id 13.9 name d10_J62_c9

Opened d10_J62_c9 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 1.23, step 2, values float32  

> rename #13 d10-PTC-sharp

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-5.pdb
> id 14.10 name d10_J53_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J53_c0 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-5.pdb
> id 14.1 name d10_J54_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J54_c1 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-5.pdb
> id 14.2 name d10_J55_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J55_c2 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-5.pdb
> id 14.3 name d10_J56_c3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J56_c3 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-5.pdb
> id 14.4 name d10_J57_c4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J57_c4 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-5.pdb
> id 14.5 name d10_J58_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J58_c5 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-5.pdb
> id 14.6 name d10_J59_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J59_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-5.pdb
> id 14.7 name d10_J60_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J60_c7 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-5.pdb
> id 14.8 name d10_J61_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J61_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb
> id 14.9 name d10_J62_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J62_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #14 d10-PTC-models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J111_APE_0.7Apix.mrc
> id 20.1 name dE_J111_ape

Opened dE_J111_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.378, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J112_AP_0.7Apix.mrc
> id 20.2 name dE_J112_ap

Opened dE_J112_ap as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.353, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J113_PE_0.7Apix.mrc
> id 20.3 name dE_J113_pe

Opened dE_J113_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.396, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J124_E_0.7Apix.mrc
> id 20.4 name dE_J124_e

Opened dE_J124_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.336, step 2, values float32  

> rename #20 dE

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_SHARP_J111_APE_0.7Apix.mrc
> id 21.1 name dE_J111_ape

Opened dE_J111_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.565, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_SHARP_J112_AP_0.7Apix.mrc
> id 21.2 name dE_J112_ap

Opened dE_J112_ap as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.452, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_SHARP_J113_PE_0.7Apix.mrc
> id 21.3 name dE_J113_pe

Opened dE_J113_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.593, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_SHARP_J124_E_0.7Apix.mrc
> id 21.4 name dE_J124_e

Opened dE_J124_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.436, step 2, values float32  

> rename #21 dE-sharp

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
> coot-2.pdb id 22.1 name dE_J111_ape

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J111_ape #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-
> coot-2.pdb id 22.2 name dE_J112_ap

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J112_ap #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-
> coot-1.pdb id 22.3 name dE_J113_pe

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J113_pe #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-
> coot-1.pdb id 22.4 name dE_J124_e

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J124_e #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #22 dE-models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J239_PTCclass0_0.7Apix.mrc
> id 23.10 name dE_J239_c0

Opened dE_J239_c0 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.131, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J240_PTCclass1_0.7Apix.mrc
> id 23.1 name dE_J240_c1

Opened dE_J240_c1 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.139, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J241_PTCclass2_0.7Apix.mrc
> id 23.2 name dE_J241_c2

Opened dE_J241_c2 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.14, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J242_PTCclass3_0.7Apix.mrc
> id 23.3 name dE_J242_c3

Opened dE_J242_c3 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.101, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J243_PTCclass4_0.7Apix.mrc
> id 23.4 name dE_J243_c4

Opened dE_J243_c4 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.139, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J244_PTCclass5_0.7Apix.mrc
> id 23.5 name dE_J244_c5

Opened dE_J244_c5 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.139, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J245_PTCclass6_0.7Apix.mrc
> id 23.6 name dE_J245_c6

Opened dE_J245_c6 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.141, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J246_PTCclass7_0.7Apix.mrc
> id 23.7 name dE_J246_c7

Opened dE_J246_c7 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.139, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J247_PTCclass8_0.7Apix.mrc
> id 23.8 name dE_J247_c8

Opened dE_J247_c8 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.139, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_NU_J248_PTCclass9_0.7Apix.mrc
> id 23.9 name dE_J248_c9

Opened dE_J248_c9 as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.141, step 2, values float32  

> rename #23 dE-PTC

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ239-coot-1.pdb id 25.10 name dE_J239_c0

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ239-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ240-coot-1.pdb id 25.1 name dE_J240_c1

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ240-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ241-coot-1.pdb id 25.2 name dE_J241_c2

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ241-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ242-coot-1.pdb id 25.3 name dE_J242_c3

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ242-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ243-coot-1.pdb id 25.4 name dE_J243_c4

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ243-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ244-coot-1.pdb id 25.5 name dE_J244_c5

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ244-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ245-coot-1.pdb id 25.6 name dE_J245_c6

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ245-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ246-coot-1.pdb id 25.7 name dE_J246_c7

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ246-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ247-coot-1.pdb id 25.8 name dE_J247_c8

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ247-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEJ248-coot-1.pdb id 25.9 name dE_J248_c9

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEJ248-coot-1.pdb  

> rename #25 dE-PTC-models

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc0-J239-coot-1.pdb id 25.10 name dE_J239_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc0-J239-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J239_c0 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc1-J240-coot-1.pdb id 25.1 name dE_J240_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc1-J240-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J240_c1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc2-J241-coot-1.pdb id 25.2 name dE_J241_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc2-J241-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J241_c2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc3-J242-coot-1.pdb id 25.3 name dE_J242_c3

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc3-J242-coot-1.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc5-J244-coot-1.pdb id 25.5 name dE_J244_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc5-J244-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J244_c5 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc6-J245-coot-1.pdb id 25.6 name dE_J245_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc6-J245-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J245_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc7-J246-coot-1.pdb id 25.7 name dE_J246_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc7-J246-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J246_c7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc8-J247-coot-1.pdb id 25.8 name dE_J247_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc8-J247-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J247_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc9-J248-coot-1.pdb id 25.9 name dE_J248_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc9-J248-coot-1.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J248_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #25 dE-PTC-models

> set bgColor white

> style stick

Changed 1170284 atom styles  

> graphics quality 1

> volume step 1

> volume color gray

> volume style mesh

> volume hide #2.*

Expected a keyword  

> volume #2.* hide

> volume #2.*#3.*#4.*#5.*#10.*#11.*#12.*#13.*#20.*#21.*#23.* hide

> hide #!14.1 models

> hide #!6.*#!14.*#!22.*#!25.* models

> hide #1.2:HOH

> color #1.2 grey

> color #1.12 gray

> hide #!6.*.2 models

> hide #!14.*.2 models

> hide #!22.*.2 models

> hide #!25.*.2 models

> show #!20.1 models

> show #!22.1 models

> view #22.1/a:2552

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
> coot-4-7k00scale.pdb id 22.1 name dE_J111_ape

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
coot-4-7k00scale.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J111_ape #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> style #!22.1#!22.1.3 stick

Changed 20827 atom styles  

> close #22.1-4

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
> coot-4-7k00scale.pdb id 22.1 name dE_J111_ape

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj111-APE-PTC-
coot-4-7k00scale.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J111_ape #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-
> coot-4-7k00scale.pdb id 22.2 name dE_J112_ap

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj112-AP-PTC-
coot-4-7k00scale.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J112_ap #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-
> coot-4-7k00scale.pdb id 22.3 name dE_J113_pe

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj113-PE-PTC-
coot-4-7k00scale.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J113_pe #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-
> coot-4-7k00scale.pdb id 22.4 name dE_J124_e

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/dEj124-E-PTC-
coot-4-7k00scale.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
135 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 141 141 THR l 42 LYS l 58
1 17  
Start residue of secondary structure not found: HELIX 142 142 PRO l 109 PRO l
125 1 17  
Start residue of secondary structure not found: HELIX 143 143 ASN m 13 GLU m
32 1 20  
Start residue of secondary structure not found: HELIX 144 144 LEU m 38 ASP m
58 1 21  
Start residue of secondary structure not found: HELIX 145 145 SER m 59 ARG m
71 1 13  
Start residue of secondary structure not found: HELIX 146 146 ASP m 72 ALA m
88 1 17  
Start residue of secondary structure not found: HELIX 147 147 ASP n 2 GLY n 22
1 21  
178 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J124_e #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> style #!22.1-4 stick

Changed 40471 atom styles  

> hide #!22.4 models

> hide #!22.3 models

> hide #!22.2 models

> volume #20.1 level 0.3

> show #!22.2 models

> hide #!22.2 models

> show #!20.2 models

> hide #!20.1 models

> volume #20.2 level 0.3

> volume #20.3 level 0.3

> volume #20.4 level 0.3

> show #!20.3 models

> hide #!20.2 models

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> volume #20.* level 0.25

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> view #6.1/a:2457

> show #!4.1 models

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> color #6.*/a:2491 orange

> show #!22.1 models

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> volume #2.* level 0.02

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> volume #10.* level 0.02

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> volume #12.* level 0.6

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> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> volume #4.* level 0.6

> hide #!4.2 models

> show #!4.1 models

> show #!4.2 models

> hide #!4.1 models

> show #!4.3 models

> hide #!4.2 models

> hide #!4.3 models

> show #!4.1 models

> hide #!4.1 models

> show #!4.2 models

> show #!4.4 models

> hide #!4.2 models

> show #!4.5 models

> hide #!4.4 models

> show #!4.7 models

> hide #!4.5 models

> volume style surface

> windowsize 600 400

> volume meshLighting

Missing "meshLighting" keyword's argument  

> volume style mesh

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!4.7 models

> show #!4.7 models

> hide #!4.7 models

> show #!2.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!23.1 models

> hide #!23.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> volume #23.* level 0.1

> hide #!23.1 models

> show #!23.1 models

> hide #!23.1 models

> show #!23.1 models

> hide #!23.1 models

> show #!23.2 models

> hide #!23.2 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.4 models

> hide #!23.4 models

> show #!23.5 models

> hide #!23.5 models

> show #!23.6 models

> hide #!23.6 models

> show #!23.7 models

> hide #!23.7 models

> show #!23.8 models

> hide #!23.8 models

> show #!23.9 models

> hide #!23.9 models

> show #!23.10 models

> hide #!23.10 models

> volume style mesh

> nucleotides atoms

> windowsize 600 600

> lighting simple

> graphics silhouettes false

> cartoon suppressBackboneDisplay false

Computing secondary structure  
[Repeated 3 time(s)]

> cartoon tether opacity 0

> cartoon tether scale 0

> view list

No named views.  

> view matrix camera
> 0.87887,-0.35882,0.31438,170.09,-0.47223,-0.56076,0.68011,235.28,-0.067746,-0.74618,-0.66228,87.342

[Repeated 1 time(s)]

> near offset -27.749, axis -0.314,-0.680,0.662, point 156.1,204.9,116.9)

Unknown command: near offset -27.749, axis -0.314,-0.680,0.662, point
156.1,204.9,116.9)  

> far offset 9.6172, axis 0.314,0.680,-0.662, point 144.3,179.5,141.6)

Unknown command: far offset 9.6172, axis 0.314,0.680,-0.662, point
144.3,179.5,141.6)  

> view matrix camera
> 0.87887,-0.35882,0.31438,170.09,-0.47223,-0.56076,0.68011,235.28,-0.067746,-0.74618,-0.66228,87.342

> ~clip

> clip near -27.749 far 9.6172

> hide #!6.6 models

> hide #!6.2 models

> show #!6.2 models

> hide #!2.1 models

> view matrix camera
> 0.87887,-0.35882,0.31438,170.09,-0.47223,-0.56076,0.68011,235.28,-0.067746,-0.74618,-0.66228,87.342

> ~clip

> clip near -27.749 far 9.6172

> hide #!6.2 models

> show #!1.2 models

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2446-2447 light pink

> color #1.2/a:2450-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2450-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

19 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.2/Y:76@N3':101@C

Created 1 bond  

> bond #1.2/Z:76@N3':101@C

Created 1 bond  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> ~clip

> clip near -27.749 far 9.6172

> view matrix camera
> 0.87887,-0.35882,0.31438,170.09,-0.47223,-0.56076,0.68011,235.28,-0.067746,-0.74618,-0.66228,87.342

[Repeated 1 time(s)]

> ~clip

> clip near -27.749 far 9.6172

> windowsize 1000,1000

Expected an integer >= 1 or a keyword  

> windowsize 1000 1000

> show #1.2/a:2447-2450

> show #1.2/a:2447-2450 target c

> show #1.2/a:2447-2451 target c

> color #1.2/a:2447-2451 gold

> color #1.2/a:2451 green

> color #1.2/a:2447-2451 gold

> color #1.2/a:2451 green traget a

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #1.2/a:2451 green traget atoms

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color #1.2/a:2451 green target a

> cartoon suppressBackboneDisplay true

> ~cartoon

> cartoon #1.2/a:2058-2064,2499-2506,2477-2451/Y:73-76/Z:73-76

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> view matrix

view matrix camera
0.87809,-0.35753,0.31801,169.33,-0.47391,-0.55799,0.68122,233.84,-0.066106,-0.74887,-0.6594,86.842  
view matrix models
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0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> clip list

Using 2 clip planes:  
near offset -23.257, axis -0.318,-0.681,0.659, point 151.7,200.5,116.7)  
far offset 10.277, axis 0.318,0.681,-0.659, point 141.1,177.6,138.7)  

> volume style mesh

> nucleotides atoms

> windowsize 600 600

> lighting simple

> graphics silhouettes false

> cartoon suppressBackboneDisplay true

> cartoon tether opacity 0

> cartoon tether scale 0

> view matrix camera
> 0.87809,-0.35753,0.31801,169.33,-0.47391,-0.55799,0.68122,233.84,-0.066106,-0.74887,-0.6594,86.842

> ~clip

> clip near -23.257 far 10.277

> view matrix camera
> 0.87809,-0.35753,0.31801,169.33,-0.47391,-0.55799,0.68122,233.84,-0.066106,-0.74887,-0.6594,86.842

> ~clip

> clip near -23.257 far 10.277

> cartoon suppressBackboneDisplay false

> ~cartoon

> view matrix camera
> 0.87809,-0.35753,0.31801,169.33,-0.47391,-0.55799,0.68122,233.84,-0.066106,-0.74887,-0.6594,86.842

> ~clip

> view matrix camera
> 0.87809,-0.35753,0.31801,169.33,-0.47391,-0.55799,0.68122,233.84,-0.066106,-0.74887,-0.6594,86.842

> clip near -23.257 far 10.277

> view A2503_view4_map

Expected an objects specifier or a view name or a keyword  

> show #!1.2 models

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> color #1.2/a:2451 green target a

> ~show #1.2

> ~hbonds #1.2

> name to_show #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

20 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> cartoon suppressBackboneDisplay true

> show #!1.2 models

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> color #1.2/a:2451 green target a

> ~show #1.2

> ~hbonds #1.2

> name to_show #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

20 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> color #1.7/a:2451 green target a

> ~show #1.7

> ~hbonds #1.7

> name to_show #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

14 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> color #1.9/A:2451 green target a

> ~show #1.9

> ~hbonds #1.9

> name to_show #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

7 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> color #1.11/BA:2451 green target a

> ~show #1.11

> ~hbonds #1.11

> name to_show #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

17 hydrogen bonds found  

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.11/B5:24@C/B8:76@O3'

Created 1 bond  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> hide #!1.10 models

> volume #1.1 level 0.008

> volume #1.3 level 0.230

> volume #1.10 level 0.012

> volume #2.2 level 0.016

> volume #2.3 level 0.014

> volume #2.4 level 0.014

> volume #2.5 level 0.016

> volume #2.6 level 0.012

> volume #4.10 level 0.400

> volume #4.1 level 0.500

> volume #4.2 level 0.470

> volume #4.3 level 0.500

> volume #4.4 level 0.500

> volume #4.5 level 0.480

> volume #4.6 level 0.500

> volume #4.7 level 0.500

> volume #4.8 level 0.550

> volume #4.9 level 0.520

> volume #10.1 level 0.015

> volume #10.2 level 0.015

> volume #10.3 level 0.012

> volume #12.10 level 0.360

> volume #12.1 level 0.400

> volume #12.2 level 0.410

> volume #12.3 level 0.430

> volume #12.4 level 0.420

> volume #12.5 level 0.420

> volume #12.6 level 0.430

> volume #12.7 level 0.440

> volume #12.8 level 0.410

> volume #12.9 level 0.420

> volume #20.1 level 0.220

> volume #20.2 level 0.220

> volume #20.3 level 0.230

> volume #20.4 level 0.170

> volume #23.* level 0.1

> show #!1.2 models

> show #!1.1 models

> volume #1.1 level 0.015

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> color #1.2/a:2451 green target a

> ~show #1.2

> ~hbonds #1.2

> name to_show #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

20 hydrogen bonds found  

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> show #!1.6 models

> volume #1.6 level 0.01

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> color #1.7/a:2451 green target a

> ~show #1.7

> ~hbonds #1.7

> name to_show #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

14 hydrogen bonds found  

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> show #!1.8 models

> volume #1.8 level 0.11

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> color #1.9/A:2451 green target a

> ~show #1.9

> ~hbonds #1.9

> name to_show #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

7 hydrogen bonds found  

> volume #1.8 color black transparency 0.8

> volume zone #1.8 nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> show #!1.10 models

> volume #1.10 level 0.025

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> color #1.11/BA:2451 green target a

> ~show #1.11

> ~hbonds #1.11

> name to_show #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

17 hydrogen bonds found  

> volume #1.10 color black transparency 0.8

> volume zone #1.10 nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> hide #!1.10 models

> show #!1.14 models

> show #!1.13 models

> volume #1.13 level 0.01

> hide #1.14

> color #1.14/Y maroon

> color #1.14/Z rebecca purple

> color #1.14/a:2058-2064 cornflower blue

> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> color #1.14/a:2451 green target a

> ~show #1.14

> ~hbonds #1.14

> name to_show #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

13 hydrogen bonds found  

> volume #1.13 color black transparency 0.8

> volume zone #1.13 nearAtoms #1.14/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cam.png height
> 600 width 600 supersample 3

> hide #!1.14 models

> hide #!1.13 models

> show #!22.1 models

> show #!21.1 models

> volume #21.1 level 0.4

> hide #22.1

> color #22.1/Y maroon

> color #22.1/Z rebecca purple

> color #22.1/a:2058-2064 cornflower blue

> color #22.1/a:2447-2451 gold

> color #22.1/a:2499-2506 green yellow

> color #22.1/a:2499-2506 green yellow target c

> color #22.1/a:2451 green target a

> ~show #22.1

> ~hbonds #22.1

> name to_show #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.1

> cartoon #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.1 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

15 hydrogen bonds found  

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> hide #!21.1 models

> view name A2503_view4_map

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> color #25.10/a:2451 green target a

> ~show #25.10

> ~hbonds #25.10

> name to_show #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

18 hydrogen bonds found  

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J239_c0.png
> height 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> color #25.10/a:2451 green target a

> ~show #25.10

> ~hbonds #25.10

> name to_show #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

18 hydrogen bonds found  

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> hide #!25.10 models

> show #!25.10 models

> hide #!25.10 models

> show #!25.10 models

> hide #!23.10 models

> show #!23.10 models

> hide #!23.10 models

> show #!23.10 models

> hide #!23.10 models

> show #!23.10 models

> hide #!23.10 models

> show #!23.10 models

> hide #!23.10 models

> show #!23.10 models

> hide #!23.10 models

> hide #!25.10 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> color #25.1/a:2451 green target a

> ~show #25.1

> ~hbonds #25.1

> name to_show #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

19 hydrogen bonds found  

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc0-J239-coot-2.pdb id 25.10 name dE_J239_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc0-J239-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J239_c0 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc1-J240-coot-2.pdb id 25.1 name dE_J240_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc1-J240-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J240_c1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc2-J241-coot-2.pdb id 25.2 name dE_J241_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc2-J241-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J241_c2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc3-J242-coot-2.pdb id 25.3 name dE_J242_c3

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc3-J242-coot-2.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc5-J244-coot-2.pdb id 25.5 name dE_J244_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc5-J244-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J244_c5 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc6-J245-coot-2.pdb id 25.6 name dE_J245_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc6-J245-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J245_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc7-J246-coot-2.pdb id 25.7 name dE_J246_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc7-J246-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J246_c7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc8-J247-coot-2.pdb id 25.8 name dE_J247_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc8-J247-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J247_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc9-J248-coot-2.pdb id 25.9 name dE_J248_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc9-J248-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J248_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> close #25.1-2,5-10

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc0-J239-coot-2.pdb id 25.10 name dE_J239_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc0-J239-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J239_c0 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc1-J240-coot-2.pdb id 25.1 name dE_J240_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc1-J240-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J240_c1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc2-J241-coot-2.pdb id 25.2 name dE_J241_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc2-J241-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J241_c2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc3-J242-coot-2.pdb id 25.3 name dE_J242_c3

No such file/path: /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc3-J242-coot-2.pdb  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc5-J244-coot-2.pdb id 25.5 name dE_J244_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc5-J244-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J244_c5 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc6-J245-coot-2.pdb id 25.6 name dE_J245_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc6-J245-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J245_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc7-J246-coot-2.pdb id 25.7 name dE_J246_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc7-J246-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J246_c7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc8-J247-coot-2.pdb id 25.8 name dE_J247_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc8-J247-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J247_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc9-J248-coot-2.pdb id 25.9 name dE_J248_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc9-J248-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J248_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #25 dE-PTC-models

> style #!25.1-2,5-10 stick

Changed 82404 atom styles  

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> color #25.1/a:2451 green target a

> ~show #25.1

> ~hbonds #25.1

> name to_show #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

20 hydrogen bonds found  

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> hide #!25.10 models

> hide #!25.9 models

> hide #!25.8 models

> hide #!25.7 models

> hide #!25.6 models

> hide #!25.5 models

> hide #!25.2 models

> view A2503_view4_map

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> color #25.1/a:2451 green target a

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> hbonds to_show & sidechain restrict to_show & sidechain color white

19 hydrogen bonds found  

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> color #25.1/a:2451 green target a

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> hide #25.1.3 models

> view name A2503_view5_map

> view matrix

view matrix camera
0.55391,-0.67025,0.49391,180.67,-0.81164,-0.5669,0.14092,201.9,0.18555,-0.47892,-0.85802,74.923  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> clip list

Using 2 clip planes:  
near offset -22.244, axis -0.494,-0.141,0.858, point 155,195.3,115.3)  
far offset 11.29, axis 0.494,0.141,-0.858, point 138.4,190.6,144.1)  

Cell requested for row 120 is out of bounds for table with 132 rows! Resizing
table model.  

> close #25.2

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc2-J241-coot-3.pdb id 25.2 name dE_J241_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc2-J241-coot-3.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J241_c2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc4-J243-coot-2.pdb id 25.4 name dE_J243_c4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc4-J243-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J243_c4 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc3-J242-coot-2.pdb id 25.3 name dE_J242_c3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-PTC/dEc3-J242-coot-2.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J242_c3 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> show #!25.1-4 atoms

[Repeated 1 time(s)]

> style #!25.1-4 stick

Changed 41246 atom styles  

> hide #!25.2 models

> hide #!25.3 models

> hide #!25.4 models

> hide #!25.1 models

> show #!25.2 models

> hide #!25.2 models

> show #!25.3 models

> hide #!25.3 models

> show #!25.4 models

> hide #!25.4 models

> show #!25.1 models

> show #!25.2 models

> hide #!25.1 models

> show #!25.1 models

> hide #!25.2 models

> hide #!25.1 models

> hide #!23.1 models

> view A2503_view4_map

> graphics quality 6

> show #!1.2 models

> show #!1.1 models

> volume #1.1 level 0.015

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> color #1.2/a:2451 green target a

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> show #!1.6 models

> volume #1.6 level 0.01

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> color #1.7/a:2451 green target a

> ~show #1.7

> ~hbonds #1.7

> name to_show
> #1.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> show #!1.8 models

> volume #1.8 level 0.11

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> color #1.9/A:2451 green target a

> ~show #1.9

> ~hbonds #1.9

> name to_show
> #1.9/A:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> volume #1.8 color black transparency 0.8

> volume zone #1.8 nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> show #!1.10 models

> volume #1.10 level 0.025

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> color #1.11/BA:2451 green target a

> ~show #1.11

> ~hbonds #1.11

> name to_show
> #1.11/BA:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> volume #1.10 color black transparency 0.8

> volume zone #1.10 nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

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> volume #1.13 level 0.01

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> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> color #1.14/a:2451 green target a

> ~show #1.14

> ~hbonds #1.14

> name to_show
> #1.14/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cam.png height
> 600 width 600 supersample 3

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> volume #4.10 level 0.55

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> color #6.10/Y maroon

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> color #6.10/a:2499-2506 green yellow target c

> color #6.10/a:2451 green target a

> ~show #6.10

> ~hbonds #6.10

> name to_show
> #6.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.10

> cartoon #6.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.10 60 target c

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

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> volume #4.1 level 0.6

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> color #6.1/Y maroon

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> color #6.1/a:2499-2506 green yellow target c

> color #6.1/a:2451 green target a

> ~show #6.1

> ~hbonds #6.1

> name to_show
> #6.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.1

> cartoon #6.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.1 60 target c

> volume #4.1 color black transparency 0.8

> volume zone #4.1 nearAtoms #6.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

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> volume #4.2 level 0.7

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> color #6.2/Y maroon

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> color #6.2/a:2447-2451 gold

> color #6.2/a:2499-2506 green yellow

> color #6.2/a:2499-2506 green yellow target c

> color #6.2/a:2451 green target a

> ~show #6.2

> ~hbonds #6.2

> name to_show
> #6.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.2

> cartoon #6.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.2 60 target c

> volume #4.2 color black transparency 0.8

> volume zone #4.2 nearAtoms #6.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

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> volume #4.3 level 0.6

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> color #6.3/Y maroon

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> color #6.3/a:2499-2506 green yellow

> color #6.3/a:2499-2506 green yellow target c

> color #6.3/a:2451 green target a

> ~show #6.3

> ~hbonds #6.3

> name to_show
> #6.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.3

> cartoon #6.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.3 60 target c

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

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> show #!6.4 models

> show #!4.4 models

> volume #4.4 level 0.65

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> color #6.4/Y maroon

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> color #6.4/a:2447-2451 gold

> color #6.4/a:2499-2506 green yellow

> color #6.4/a:2499-2506 green yellow target c

> color #6.4/a:2451 green target a

> ~show #6.4

> ~hbonds #6.4

> name to_show
> #6.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.4

> cartoon #6.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.4 60 target c

> volume #4.4 color black transparency 0.8

> volume zone #4.4 nearAtoms #6.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

> hide #!4.4 models

> show #!6.5 models

> show #!4.5 models

> volume #4.5 level 0.65

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> color #6.5/Y maroon

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> color #6.5/a:2447-2451 gold

> color #6.5/a:2499-2506 green yellow

> color #6.5/a:2499-2506 green yellow target c

> color #6.5/a:2451 green target a

> ~show #6.5

> ~hbonds #6.5

> name to_show
> #6.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.5

> cartoon #6.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.5 60 target c

> volume #4.5 color black transparency 0.8

> volume zone #4.5 nearAtoms #6.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

> hide #!4.5 models

> show #!6.6 models

> show #!4.6 models

> volume #4.6 level 0.6

> hide #6.6

> color #6.6/Y maroon

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> color #6.6/a:2447-2451 gold

> color #6.6/a:2499-2506 green yellow

> color #6.6/a:2499-2506 green yellow target c

> color #6.6/a:2451 green target a

> ~show #6.6

> ~hbonds #6.6

> name to_show
> #6.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.6

> cartoon #6.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.6 60 target c

> volume #4.6 color black transparency 0.8

> volume zone #4.6 nearAtoms #6.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> ~show #6.6/a:2059-2060

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

> hide #!4.6 models

> show #!6.7 models

> show #!4.7 models

> volume #4.7 level 0.65

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> color #6.7/Y maroon

> color #6.7/Z rebecca purple

> color #6.7/a:2058-2064 cornflower blue

> color #6.7/a:2447-2451 gold

> color #6.7/a:2499-2506 green yellow

> color #6.7/a:2499-2506 green yellow target c

> color #6.7/a:2451 green target a

> ~show #6.7

> ~hbonds #6.7

> name to_show
> #6.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.7

> cartoon #6.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.7 60 target c

> volume #4.7 color black transparency 0.8

> volume zone #4.7 nearAtoms #6.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

> hide #!4.7 models

> show #!6.8 models

> show #!4.8 models

> volume #4.8 level 0.55

> hide #6.8

> color #6.8/Y maroon

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> color #6.8/a:2058-2064 cornflower blue

> color #6.8/a:2447-2451 gold

> color #6.8/a:2499-2506 green yellow

> color #6.8/a:2499-2506 green yellow target c

> color #6.8/a:2451 green target a

> ~show #6.8

> ~hbonds #6.8

> name to_show
> #6.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.8

> cartoon #6.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.8 60 target c

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> volume zone #4.8 nearAtoms #6.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

> hide #!4.8 models

> show #!6.9 models

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> volume #4.9 level 0.55

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> color #6.9/Y maroon

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> color #6.9/a:2447-2451 gold

> color #6.9/a:2499-2506 green yellow

> color #6.9/a:2499-2506 green yellow target c

> color #6.9/a:2451 green target a

> ~show #6.9

> ~hbonds #6.9

> name to_show
> #6.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.9

> cartoon #6.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.9 60 target c

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> volume zone #4.9 nearAtoms #6.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!4.9 models

> show #!14.10 models

> show #!12.10 models

> volume #12.10 level 0.5

> hide #14.10

> color #14.10/Y maroon

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> color #14.10/a:2447-2451 gold

> color #14.10/a:2499-2506 green yellow

> color #14.10/a:2499-2506 green yellow target c

> color #14.10/a:2451 green target a

> ~show #14.10

> ~hbonds #14.10

> name to_show
> #14.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.10

> cartoon #14.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.10 60 target c

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!12.10 models

> show #!14.1 models

> show #!12.1 models

> volume #12.1 level 0.5

> hide #14.1

> color #14.1/Y maroon

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> color #14.1/a:2447-2451 gold

> color #14.1/a:2499-2506 green yellow

> color #14.1/a:2499-2506 green yellow target c

> color #14.1/a:2451 green target a

> ~show #14.1

> ~hbonds #14.1

> name to_show
> #14.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.1

> cartoon #14.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.1 60 target c

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

> hide #!12.1 models

> show #!14.2 models

> show #!12.2 models

> volume #12.2 level 0.5

> hide #14.2

> color #14.2/Y maroon

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> color #14.2/a:2499-2506 green yellow

> color #14.2/a:2499-2506 green yellow target c

> color #14.2/a:2451 green target a

> ~show #14.2

> ~hbonds #14.2

> name to_show
> #14.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.2

> cartoon #14.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.2 60 target c

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> volume zone #12.2 nearAtoms #14.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!12.2 models

> show #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.5

> hide #14.3

> color #14.3/Y maroon

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> color #14.3/a:2499-2506 green yellow target c

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> ~show #14.3

> ~hbonds #14.3

> name to_show
> #14.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.3

> cartoon #14.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.3 60 target c

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

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> show #!14.4 models

> show #!12.4 models

> volume #12.4 level 0.5

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> color #14.4/Y maroon

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> color #14.4/a:2499-2506 green yellow

> color #14.4/a:2499-2506 green yellow target c

> color #14.4/a:2451 green target a

> ~show #14.4

> ~hbonds #14.4

> name to_show
> #14.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.4

> cartoon #14.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.4 60 target c

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> volume zone #12.4 nearAtoms #14.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!12.4 models

> show #!14.5 models

> show #!12.5 models

> volume #12.5 level 0.5

> hide #14.5

> color #14.5/Y maroon

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> color #14.5/a:2447-2451 gold

> color #14.5/a:2499-2506 green yellow

> color #14.5/a:2499-2506 green yellow target c

> color #14.5/a:2451 green target a

> ~show #14.5

> ~hbonds #14.5

> name to_show
> #14.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.5

> cartoon #14.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.5 60 target c

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

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> show #!14.6 models

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> volume #12.6 level 0.5

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> color #14.6/Y maroon

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> color #14.6/a:2447-2451 gold

> color #14.6/a:2499-2506 green yellow

> color #14.6/a:2499-2506 green yellow target c

> color #14.6/a:2451 green target a

> ~show #14.6

> ~hbonds #14.6

> name to_show
> #14.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.6

> cartoon #14.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.6 60 target c

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

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> show #!14.7 models

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> volume #12.7 level 0.5

> hide #14.7

> color #14.7/Y maroon

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> color #14.7/a:2447-2451 gold

> color #14.7/a:2499-2506 green yellow

> color #14.7/a:2499-2506 green yellow target c

> color #14.7/a:2451 green target a

> ~show #14.7

> ~hbonds #14.7

> name to_show
> #14.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.7

> cartoon #14.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.7 60 target c

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> color #14.8/a:2451 green target a

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> ~hbonds #14.8

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> #14.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.8

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J61_c8.png
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> ~show #14.9

> ~hbonds #14.9

> name to_show
> #14.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.9

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J62_c9.png
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> ~show #22.1

> ~hbonds #22.1

> name to_show
> #22.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.1

> cartoon #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J111_ape.png
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> ~show #22.2

> ~hbonds #22.2

> name to_show
> #22.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.2

> cartoon #22.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J112_ap.png
> height 600 width 600 supersample 3

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> ~show #22.3

> ~hbonds #22.3

> name to_show
> #22.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.3

> cartoon #22.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J113_pe.png
> height 600 width 600 supersample 3

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> ~show #22.4

> ~hbonds #22.4

> name to_show
> #22.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.4

> cartoon #22.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

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> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J124_e.png
> height 600 width 600 supersample 3

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> volume #23.10 level 0.1

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> color #25.10/a:2499-2506 green yellow target c

> color #25.10/a:2451 green target a

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J239_c0.png
> height 600 width 600 supersample 3

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> show #!23.1 models

> volume #23.1 level 0.1

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> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> color #25.1/a:2451 green target a

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

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> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J240_c1.png
> height 600 width 600 supersample 3

> hide #!25.1 models

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> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

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> color #25.2/Y maroon

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> color #25.2/a:2499-2506 green yellow target c

> color #25.2/a:2451 green target a

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

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> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J241_c2.png
> height 600 width 600 supersample 3

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> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

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> color #25.3/Y maroon

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> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target

Missing "target" keyword's argument  

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!25.3 models

> show #!25.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> hide #!25.3 models

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> show #!23.2 models

> volume #23.2 level 0.1

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> color #25.2/Y maroon

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> color #25.2/a:2499-2506 green yellow target c

> color #25.2/a:2451 green target a

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

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> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J241_c2.png
> height 600 width 600 supersample 3

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> show #!25.3 models

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> volume #23.3 level 0.1

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> color #25.3/Y maroon

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> color #25.3/a:2499-2506 green yellow target c

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> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J242_c3.png
> height 600 width 600 supersample 3

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> show #!25.4 models

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> volume #23.4 level 0.1

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> color #25.4/Y maroon

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> color #25.4/a:2499-2506 green yellow target c

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> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J243_c4.png
> height 600 width 600 supersample 3

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> volume #23.5 level 0.1

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> color #25.5/Y maroon

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> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

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> volume zone #23.5 nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J244_c5.png
> height 600 width 600 supersample 3

> hide #!25.5 models

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> show #!25.6 models

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> volume #23.6 level 0.1

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> color #25.6/Y maroon

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> color #25.6/a:2499-2506 green yellow target c

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> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

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> volume zone #23.6 nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J245_c6.png
> height 600 width 600 supersample 3

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> hide #!23.6 models

> show #!25.7 models

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> volume #23.7 level 0.1

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> color #25.7/Y maroon

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> color #25.7/a:2499-2506 green yellow target c

> color #25.7/a:2451 green target a

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

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> volume zone #23.7 nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J246_c7.png
> height 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

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> volume #23.8 level 0.1

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> color #25.8/Y maroon

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> color #25.8/a:2499-2506 green yellow target c

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> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

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> volume zone #23.8 nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J247_c8.png
> height 600 width 600 supersample 3

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> show #!25.9 models

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> volume #23.9 level 0.1

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> color #25.9/a:2499-2506 green yellow target c

> color #25.9/a:2451 green target a

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

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> volume zone #23.9 nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J248_c9.png
> height 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> graphics quality 1

> graphics quality 6

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> volume #1.1 level 0.015

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> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> show #!1.6 models

> volume #1.6 level 0.01

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> ~show #1.7

> ~hbonds #1.7

> name to_show
> #1.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> show #!1.8 models

> volume #1.8 level 0.11

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> ~show #1.9

> ~hbonds #1.9

> name to_show
> #1.9/A:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> volume #1.8 color black transparency 0.8

> volume zone #1.8 nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> show #!1.10 models

> volume #1.10 level 0.025

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> ~show #1.11

> ~hbonds #1.11

> name to_show
> #1.11/BA:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> volume #1.10 color black transparency 0.8

> volume zone #1.10 nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> hide #!1.10 models

> show #!1.14 models

> show #!1.13 models

> volume #1.13 level 0.01

> hide #1.14

> color #1.14/Y maroon

> color #1.14/Z rebecca purple

> color #1.14/a:2058-2064 cornflower blue

> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> ~show #1.14

> ~hbonds #1.14

> name to_show
> #1.14/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

> volume #1.13 color black transparency 0.8

> volume zone #1.13 nearAtoms #1.14/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_8cam.png height
> 600 width 600 supersample 3

> hide #!1.14 models

> hide #!1.13 models

> show #!6.10 models

> show #!4.10 models

> volume #4.10 level 0.55

> hide #6.10

> color #6.10/Y maroon

> color #6.10/Z rebecca purple

> color #6.10/a:2058-2064 cornflower blue

> color #6.10/a:2447-2451 gold

> color #6.10/a:2499-2506 green yellow

> color #6.10/a:2499-2506 green yellow target c

> ~show #6.10

> ~hbonds #6.10

> name to_show
> #6.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.10

> cartoon #6.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.10 60 target c

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

> hide #!4.10 models

> show #!6.1 models

> show #!4.1 models

> volume #4.1 level 0.6

> hide #6.1

> color #6.1/Y maroon

> color #6.1/Z rebecca purple

> color #6.1/a:2058-2064 cornflower blue

> color #6.1/a:2447-2451 gold

> color #6.1/a:2499-2506 green yellow

> color #6.1/a:2499-2506 green yellow target c

> ~show #6.1

> ~hbonds #6.1

> name to_show
> #6.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.1

> cartoon #6.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.1 60 target c

> volume #4.1 color black transparency 0.8

> volume zone #4.1 nearAtoms #6.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

> hide #!4.1 models

> show #!6.2 models

> show #!4.2 models

> volume #4.2 level 0.7

> hide #6.2

> color #6.2/Y maroon

> color #6.2/Z rebecca purple

> color #6.2/a:2058-2064 cornflower blue

> color #6.2/a:2447-2451 gold

> color #6.2/a:2499-2506 green yellow

> color #6.2/a:2499-2506 green yellow target c

> ~show #6.2

> ~hbonds #6.2

> name to_show
> #6.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.2

> cartoon #6.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.2 60 target c

> volume #4.2 color black transparency 0.8

> volume zone #4.2 nearAtoms #6.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

> hide #!4.2 models

> show #!6.3 models

> show #!4.3 models

> volume #4.3 level 0.6

> hide #6.3

> color #6.3/Y maroon

> color #6.3/Z rebecca purple

> color #6.3/a:2058-2064 cornflower blue

> color #6.3/a:2447-2451 gold

> color #6.3/a:2499-2506 green yellow

> color #6.3/a:2499-2506 green yellow target c

> ~show #6.3

> ~hbonds #6.3

> name to_show
> #6.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.3

> cartoon #6.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.3 60 target c

> volume #4.3 color black transparency 0.8

> volume zone #4.3 nearAtoms #6.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

> hide #!4.3 models

> show #!6.4 models

> show #!4.4 models

> volume #4.4 level 0.65

> hide #6.4

> color #6.4/Y maroon

> color #6.4/Z rebecca purple

> color #6.4/a:2058-2064 cornflower blue

> color #6.4/a:2447-2451 gold

> color #6.4/a:2499-2506 green yellow

> color #6.4/a:2499-2506 green yellow target c

> ~show #6.4

> ~hbonds #6.4

> name to_show
> #6.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.4

> cartoon #6.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.4 60 target c

> volume #4.4 color black transparency 0.8

> volume zone #4.4 nearAtoms #6.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

> hide #!4.4 models

> show #!6.5 models

> show #!4.5 models

> volume #4.5 level 0.65

> hide #6.5

> color #6.5/Y maroon

> color #6.5/Z rebecca purple

> color #6.5/a:2058-2064 cornflower blue

> color #6.5/a:2447-2451 gold

> color #6.5/a:2499-2506 green yellow

> color #6.5/a:2499-2506 green yellow target c

> ~show #6.5

> ~hbonds #6.5

> name to_show
> #6.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.5

> cartoon #6.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.5 60 target c

> volume #4.5 color black transparency 0.8

> volume zone #4.5 nearAtoms #6.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

> hide #!4.5 models

> show #!6.6 models

> show #!4.6 models

> volume #4.6 level 0.6

> hide #6.6

> color #6.6/Y maroon

> color #6.6/Z rebecca purple

> color #6.6/a:2058-2064 cornflower blue

> color #6.6/a:2447-2451 gold

> color #6.6/a:2499-2506 green yellow

> color #6.6/a:2499-2506 green yellow target c

> ~show #6.6

> ~hbonds #6.6

> name to_show
> #6.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.6

> cartoon #6.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.6 60 target c

> volume #4.6 color black transparency 0.8

> volume zone #4.6 nearAtoms #6.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> ~show #6.6/a:2059-2060

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

> hide #!4.6 models

> show #!6.7 models

> show #!4.7 models

> volume #4.7 level 0.65

> hide #6.7

> color #6.7/Y maroon

> color #6.7/Z rebecca purple

> color #6.7/a:2058-2064 cornflower blue

> color #6.7/a:2447-2451 gold

> color #6.7/a:2499-2506 green yellow

> color #6.7/a:2499-2506 green yellow target c

> ~show #6.7

> ~hbonds #6.7

> name to_show
> #6.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.7

> cartoon #6.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.7 60 target c

> volume #4.7 color black transparency 0.8

> volume zone #4.7 nearAtoms #6.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

> hide #!4.7 models

> show #!6.8 models

> show #!4.8 models

> volume #4.8 level 0.55

> hide #6.8

> color #6.8/Y maroon

> color #6.8/Z rebecca purple

> color #6.8/a:2058-2064 cornflower blue

> color #6.8/a:2447-2451 gold

> color #6.8/a:2499-2506 green yellow

> color #6.8/a:2499-2506 green yellow target c

> ~show #6.8

> ~hbonds #6.8

> name to_show
> #6.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.8

> cartoon #6.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.8 60 target c

> volume #4.8 color black transparency 0.8

> volume zone #4.8 nearAtoms #6.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

> hide #!4.8 models

> show #!6.9 models

> show #!4.9 models

> volume #4.9 level 0.55

> hide #6.9

> color #6.9/Y maroon

> color #6.9/Z rebecca purple

> color #6.9/a:2058-2064 cornflower blue

> color #6.9/a:2447-2451 gold

> color #6.9/a:2499-2506 green yellow

> color #6.9/a:2499-2506 green yellow target c

> ~show #6.9

> ~hbonds #6.9

> name to_show
> #6.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.9

> cartoon #6.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.9 60 target c

> volume #4.9 color black transparency 0.8

> volume zone #4.9 nearAtoms #6.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!4.9 models

> show #!14.10 models

> show #!12.10 models

> volume #12.10 level 0.5

> hide #14.10

> color #14.10/Y maroon

> color #14.10/Z rebecca purple

> color #14.10/a:2058-2064 cornflower blue

> color #14.10/a:2447-2451 gold

> color #14.10/a:2499-2506 green yellow

> color #14.10/a:2499-2506 green yellow target c

> ~show #14.10

> ~hbonds #14.10

> name to_show
> #14.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.10

> cartoon #14.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.10 60 target c

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!12.10 models

> show #!14.1 models

> show #!12.1 models

> volume #12.1 level 0.5

> hide #14.1

> color #14.1/Y maroon

> color #14.1/Z rebecca purple

> color #14.1/a:2058-2064 cornflower blue

> color #14.1/a:2447-2451 gold

> color #14.1/a:2499-2506 green yellow

> color #14.1/a:2499-2506 green yellow target c

> ~show #14.1

> ~hbonds #14.1

> name to_show
> #14.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.1

> cartoon #14.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.1 60 target c

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

> hide #!12.1 models

> show #!14.2 models

> show #!12.2 models

> volume #12.2 level 0.5

> hide #14.2

> color #14.2/Y maroon

> color #14.2/Z rebecca purple

> color #14.2/a:2058-2064 cornflower blue

> color #14.2/a:2447-2451 gold

> color #14.2/a:2499-2506 green yellow

> color #14.2/a:2499-2506 green yellow target c

> ~show #14.2

> ~hbonds #14.2

> name to_show
> #14.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.2

> cartoon #14.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.2 60 target c

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!12.2 models

> show #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.5

> hide #14.3

> color #14.3/Y maroon

> color #14.3/Z rebecca purple

> color #14.3/a:2058-2064 cornflower blue

> color #14.3/a:2447-2451 gold

> color #14.3/a:2499-2506 green yellow

> color #14.3/a:2499-2506 green yellow target c

> ~show #14.3

> ~hbonds #14.3

> name to_show
> #14.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.3

> cartoon #14.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.3 60 target c

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

> hide #!12.3 models

> show #!14.4 models

> show #!12.4 models

> volume #12.4 level 0.5

> hide #14.4

> color #14.4/Y maroon

> color #14.4/Z rebecca purple

> color #14.4/a:2058-2064 cornflower blue

> color #14.4/a:2447-2451 gold

> color #14.4/a:2499-2506 green yellow

> color #14.4/a:2499-2506 green yellow target c

> ~show #14.4

> ~hbonds #14.4

> name to_show
> #14.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.4

> cartoon #14.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.4 60 target c

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!12.4 models

> show #!14.5 models

> show #!12.5 models

> volume #12.5 level 0.5

> hide #14.5

> color #14.5/Y maroon

> color #14.5/Z rebecca purple

> color #14.5/a:2058-2064 cornflower blue

> color #14.5/a:2447-2451 gold

> color #14.5/a:2499-2506 green yellow

> color #14.5/a:2499-2506 green yellow target c

> ~show #14.5

> ~hbonds #14.5

> name to_show
> #14.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.5

> cartoon #14.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.5 60 target c

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

> hide #!12.5 models

> show #!14.6 models

> show #!12.6 models

> volume #12.6 level 0.5

> hide #14.6

> color #14.6/Y maroon

> color #14.6/Z rebecca purple

> color #14.6/a:2058-2064 cornflower blue

> color #14.6/a:2447-2451 gold

> color #14.6/a:2499-2506 green yellow

> color #14.6/a:2499-2506 green yellow target c

> ~show #14.6

> ~hbonds #14.6

> name to_show
> #14.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.6

> cartoon #14.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.6 60 target c

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

> hide #!12.6 models

> show #!14.7 models

> show #!12.7 models

> volume #12.7 level 0.5

> hide #14.7

> color #14.7/Y maroon

> color #14.7/Z rebecca purple

> color #14.7/a:2058-2064 cornflower blue

> color #14.7/a:2447-2451 gold

> color #14.7/a:2499-2506 green yellow

> color #14.7/a:2499-2506 green yellow target c

> ~show #14.7

> ~hbonds #14.7

> name to_show
> #14.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.7

> cartoon #14.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.7 60 target c

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J60_c7.png
> height 600 width 600 supersample 3

> hide #!14.7 models

> hide #!12.7 models

> show #!14.8 models

> show #!12.8 models

> volume #12.8 level 0.5

> hide #14.8

> color #14.8/Y maroon

> color #14.8/Z rebecca purple

> color #14.8/a:2058-2064 cornflower blue

> color #14.8/a:2447-2451 gold

> color #14.8/a:2499-2506 green yellow

> color #14.8/a:2499-2506 green yellow target c

> ~show #14.8

> ~hbonds #14.8

> name to_show
> #14.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.8

> cartoon #14.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.8 60 target c

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J61_c8.png
> height 600 width 600 supersample 3

> hide #!14.8 models

> hide #!12.8 models

> show #!14.9 models

> show #!12.9 models

> volume #12.9 level 0.5

> hide #14.9

> color #14.9/Y maroon

> color #14.9/Z rebecca purple

> color #14.9/a:2058-2064 cornflower blue

> color #14.9/a:2447-2451 gold

> color #14.9/a:2499-2506 green yellow

> color #14.9/a:2499-2506 green yellow target c

> ~show #14.9

> ~hbonds #14.9

> name to_show
> #14.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.9

> cartoon #14.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.9 60 target c

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_d10_J62_c9.png
> height 600 width 600 supersample 3

> hide #!14.9 models

> hide #!12.9 models

> show #!22.1 models

> show #!21.1 models

> volume #21.1 level 0.4

> hide #22.1

> color #22.1/Y maroon

> color #22.1/Z rebecca purple

> color #22.1/a:2058-2064 cornflower blue

> color #22.1/a:2447-2451 gold

> color #22.1/a:2499-2506 green yellow

> color #22.1/a:2499-2506 green yellow target c

> ~show #22.1

> ~hbonds #22.1

> name to_show
> #22.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.1

> cartoon #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.1 60 target c

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> hide #!21.1 models

> show #!22.2 models

> show #!21.2 models

> volume #21.2 level 0.4

> hide #22.2

> color #22.2/Y maroon

> color #22.2/Z rebecca purple

> color #22.2/a:2058-2064 cornflower blue

> color #22.2/a:2447-2451 gold

> color #22.2/a:2499-2506 green yellow

> color #22.2/a:2499-2506 green yellow target c

> ~show #22.2

> ~hbonds #22.2

> name to_show
> #22.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.2

> cartoon #22.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.2 60 target c

> volume #21.2 color black transparency 0.8

> volume zone #21.2 nearAtoms #22.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J112_ap.png
> height 600 width 600 supersample 3

> hide #!22.2 models

> hide #!21.2 models

> show #!22.3 models

> show #!21.3 models

> volume #21.3 level 0.4

> hide #22.3

> color #22.3/Y maroon

> color #22.3/Z rebecca purple

> color #22.3/a:2058-2064 cornflower blue

> color #22.3/a:2447-2451 gold

> color #22.3/a:2499-2506 green yellow

> color #22.3/a:2499-2506 green yellow target c

> ~show #22.3

> ~hbonds #22.3

> name to_show
> #22.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.3

> cartoon #22.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.3 60 target c

> volume #21.3 color black transparency 0.8

> volume zone #21.3 nearAtoms #22.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J113_pe.png
> height 600 width 600 supersample 3

> hide #!22.3 models

> hide #!21.3 models

> show #!22.4 models

> show #!21.4 models

> volume #21.4 level 0.4

> hide #22.4

> color #22.4/Y maroon

> color #22.4/Z rebecca purple

> color #22.4/a:2058-2064 cornflower blue

> color #22.4/a:2447-2451 gold

> color #22.4/a:2499-2506 green yellow

> color #22.4/a:2499-2506 green yellow target c

> ~show #22.4

> ~hbonds #22.4

> name to_show
> #22.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.4

> cartoon #22.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.4 60 target c

> volume #21.4 color black transparency 0.8

> volume zone #21.4 nearAtoms #22.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J124_e.png
> height 600 width 600 supersample 3

> hide #!22.4 models

> hide #!21.4 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J239_c0.png
> height 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J240_c1.png
> height 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J241_c2.png
> height 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency

Missing or invalid "percent" argument: Expected a number  

> hide #!25.3 models

> hide #!23.3 models

> graphics quality 6

> show #!1.2 models

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_8emm.png height 600
> width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> ~show #1.7

> ~hbonds #1.7

> name to_show
> #1.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_8cgk.png height 600
> width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> ~show #1.9

> ~hbonds #1.9

> name to_show
> #1.9/A:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_7bv8.png height 600
> width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> ~show #1.11

> ~hbonds #1.11

> name to_show
> #1.11/BA:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_7o1a.png height 600
> width 600 supersample 3

> hide #!1.11 models

> hide #!1.10 models

> show #!1.14 models

> hide #1.14

> color #1.14/Y maroon

> color #1.14/Z rebecca purple

> color #1.14/a:2058-2064 cornflower blue

> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> ~show #1.14

> ~hbonds #1.14

> name to_show
> #1.14/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #1.14/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_8cam.png height 600
> width 600 supersample 3

> hide #!1.14 models

> hide #!1.13 models

> show #!6.10 models

> hide #6.10

> color #6.10/Y maroon

> color #6.10/Z rebecca purple

> color #6.10/a:2058-2064 cornflower blue

> color #6.10/a:2447-2451 gold

> color #6.10/a:2499-2506 green yellow

> color #6.10/a:2499-2506 green yellow target c

> ~show #6.10

> ~hbonds #6.10

> name to_show
> #6.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.10

> cartoon #6.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.10 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J83_cl0.png height
> 600 width 600 supersample 3

> hide #!6.10 models

> hide #!4.10 models

> show #!6.1 models

> hide #6.1

> color #6.1/Y maroon

> color #6.1/Z rebecca purple

> color #6.1/a:2058-2064 cornflower blue

> color #6.1/a:2447-2451 gold

> color #6.1/a:2499-2506 green yellow

> color #6.1/a:2499-2506 green yellow target c

> ~show #6.1

> ~hbonds #6.1

> name to_show
> #6.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.1

> cartoon #6.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.1 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.1/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J84_cl1.png height
> 600 width 600 supersample 3

> hide #!6.1 models

> hide #!4.1 models

> show #!6.2 models

> hide #6.2

> color #6.2/Y maroon

> color #6.2/Z rebecca purple

> color #6.2/a:2058-2064 cornflower blue

> color #6.2/a:2447-2451 gold

> color #6.2/a:2499-2506 green yellow

> color #6.2/a:2499-2506 green yellow target c

> ~show #6.2

> ~hbonds #6.2

> name to_show
> #6.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.2

> cartoon #6.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.2/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J85_cl2.png height
> 600 width 600 supersample 3

> hide #!6.2 models

> hide #!4.2 models

> show #!6.3 models

> hide #6.3

> color #6.3/Y maroon

> color #6.3/Z rebecca purple

> color #6.3/a:2058-2064 cornflower blue

> color #6.3/a:2447-2451 gold

> color #6.3/a:2499-2506 green yellow

> color #6.3/a:2499-2506 green yellow target c

> ~show #6.3

> ~hbonds #6.3

> name to_show
> #6.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.3

> cartoon #6.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.3/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J86_cl3.png height
> 600 width 600 supersample 3

> hide #!6.3 models

> hide #!4.3 models

> show #!6.4 models

> hide #6.4

> color #6.4/Y maroon

> color #6.4/Z rebecca purple

> color #6.4/a:2058-2064 cornflower blue

> color #6.4/a:2447-2451 gold

> color #6.4/a:2499-2506 green yellow

> color #6.4/a:2499-2506 green yellow target c

> ~show #6.4

> ~hbonds #6.4

> name to_show
> #6.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.4

> cartoon #6.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.4/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J87_cl4.png height
> 600 width 600 supersample 3

> hide #!6.4 models

> hide #!4.4 models

> show #!6.5 models

> hide #6.5

> color #6.5/Y maroon

> color #6.5/Z rebecca purple

> color #6.5/a:2058-2064 cornflower blue

> color #6.5/a:2447-2451 gold

> color #6.5/a:2499-2506 green yellow

> color #6.5/a:2499-2506 green yellow target c

> ~show #6.5

> ~hbonds #6.5

> name to_show
> #6.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.5

> cartoon #6.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.5 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.5/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J88_cl5.png height
> 600 width 600 supersample 3

> hide #!6.5 models

> hide #!4.5 models

> show #!6.6 models

> hide #6.6

> color #6.6/Y maroon

> color #6.6/Z rebecca purple

> color #6.6/a:2058-2064 cornflower blue

> color #6.6/a:2447-2451 gold

> color #6.6/a:2499-2506 green yellow

> color #6.6/a:2499-2506 green yellow target c

> ~show #6.6

> ~hbonds #6.6

> name to_show
> #6.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.6

> cartoon #6.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.6 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.6/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> ~show #6.6/a:2059-2060

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J89_cl6.png height
> 600 width 600 supersample 3

> hide #!6.6 models

> hide #!4.6 models

> show #!6.7 models

> hide #6.7

> color #6.7/Y maroon

> color #6.7/Z rebecca purple

> color #6.7/a:2058-2064 cornflower blue

> color #6.7/a:2447-2451 gold

> color #6.7/a:2499-2506 green yellow

> color #6.7/a:2499-2506 green yellow target c

> ~show #6.7

> ~hbonds #6.7

> name to_show
> #6.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.7

> cartoon #6.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.7 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.7/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J90_cl7.png height
> 600 width 600 supersample 3

> hide #!6.7 models

> hide #!4.7 models

> show #!6.8 models

> hide #6.8

> color #6.8/Y maroon

> color #6.8/Z rebecca purple

> color #6.8/a:2058-2064 cornflower blue

> color #6.8/a:2447-2451 gold

> color #6.8/a:2499-2506 green yellow

> color #6.8/a:2499-2506 green yellow target c

> ~show #6.8

> ~hbonds #6.8

> name to_show
> #6.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.8

> cartoon #6.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.8 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.8/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J91_cl8.png height
> 600 width 600 supersample 3

> hide #!6.8 models

> hide #!4.8 models

> show #!6.9 models

> hide #6.9

> color #6.9/Y maroon

> color #6.9/Z rebecca purple

> color #6.9/a:2058-2064 cornflower blue

> color #6.9/a:2447-2451 gold

> color #6.9/a:2499-2506 green yellow

> color #6.9/a:2499-2506 green yellow target c

> ~show #6.9

> ~hbonds #6.9

> name to_show
> #6.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.9

> cartoon #6.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.9 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #6.9/a:2058-2064,2499-2506,2447,2450,2451 & sideonly
> range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d9_J92_cl9.png height
> 600 width 600 supersample 3

> hide #!6.9 models

> hide #!4.9 models

> show #!14.10 models

> hide #14.10

> color #14.10/Y maroon

> color #14.10/Z rebecca purple

> color #14.10/a:2058-2064 cornflower blue

> color #14.10/a:2447-2451 gold

> color #14.10/a:2499-2506 green yellow

> color #14.10/a:2499-2506 green yellow target c

> ~show #14.10

> ~hbonds #14.10

> name to_show
> #14.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.10

> cartoon #14.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.10 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J53_c0.png height
> 600 width 600 supersample 3

> hide #!14.10 models

> hide #!12.10 models

> show #!14.1 models

> hide #14.1

> color #14.1/Y maroon

> color #14.1/Z rebecca purple

> color #14.1/a:2058-2064 cornflower blue

> color #14.1/a:2447-2451 gold

> color #14.1/a:2499-2506 green yellow

> color #14.1/a:2499-2506 green yellow target c

> ~show #14.1

> ~hbonds #14.1

> name to_show
> #14.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.1

> cartoon #14.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.1 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J54_c1.png height
> 600 width 600 supersample 3

> hide #!14.1 models

> hide #!12.1 models

> show #!14.2 models

> hide #14.2

> color #14.2/Y maroon

> color #14.2/Z rebecca purple

> color #14.2/a:2058-2064 cornflower blue

> color #14.2/a:2447-2451 gold

> color #14.2/a:2499-2506 green yellow

> color #14.2/a:2499-2506 green yellow target c

> ~show #14.2

> ~hbonds #14.2

> name to_show
> #14.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.2

> cartoon #14.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J55_c2.png height
> 600 width 600 supersample 3

> hide #!14.2 models

> hide #!12.2 models

> show #!14.3 models

> hide #14.3

> color #14.3/Y maroon

> color #14.3/Z rebecca purple

> color #14.3/a:2058-2064 cornflower blue

> color #14.3/a:2447-2451 gold

> color #14.3/a:2499-2506 green yellow

> color #14.3/a:2499-2506 green yellow target c

> ~show #14.3

> ~hbonds #14.3

> name to_show
> #14.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.3

> cartoon #14.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J56_c3.png height
> 600 width 600 supersample 3

> hide #!14.3 models

> hide #!12.3 models

> show #!14.4 models

> hide #14.4

> color #14.4/Y maroon

> color #14.4/Z rebecca purple

> color #14.4/a:2058-2064 cornflower blue

> color #14.4/a:2447-2451 gold

> color #14.4/a:2499-2506 green yellow

> color #14.4/a:2499-2506 green yellow target c

> ~show #14.4

> ~hbonds #14.4

> name to_show
> #14.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.4

> cartoon #14.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J57_c4.png height
> 600 width 600 supersample 3

> hide #!14.4 models

> hide #!12.4 models

> show #!14.5 models

> hide #14.5

> color #14.5/Y maroon

> color #14.5/Z rebecca purple

> color #14.5/a:2058-2064 cornflower blue

> color #14.5/a:2447-2451 gold

> color #14.5/a:2499-2506 green yellow

> color #14.5/a:2499-2506 green yellow target c

> ~show #14.5

> ~hbonds #14.5

> name to_show
> #14.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.5

> cartoon #14.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.5 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J58_c5.png height
> 600 width 600 supersample 3

> hide #!14.5 models

> hide #!12.5 models

> show #!14.6 models

> hide #14.6

> color #14.6/Y maroon

> color #14.6/Z rebecca purple

> color #14.6/a:2058-2064 cornflower blue

> color #14.6/a:2447-2451 gold

> color #14.6/a:2499-2506 green yellow

> color #14.6/a:2499-2506 green yellow target c

> ~show #14.6

> ~hbonds #14.6

> name to_show
> #14.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.6

> cartoon #14.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.6 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J59_c6.png height
> 600 width 600 supersample 3

> hide #!14.6 models

> hide #!12.6 models

> show #!14.7 models

> hide #14.7

> color #14.7/Y maroon

> color #14.7/Z rebecca purple

> color #14.7/a:2058-2064 cornflower blue

> color #14.7/a:2447-2451 gold

> color #14.7/a:2499-2506 green yellow

> color #14.7/a:2499-2506 green yellow target c

> ~show #14.7

> ~hbonds #14.7

> name to_show
> #14.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.7

> cartoon #14.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.7 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J60_c7.png height
> 600 width 600 supersample 3

> hide #!14.7 models

> hide #!12.7 models

> show #!14.8 models

> hide #14.8

> color #14.8/Y maroon

> color #14.8/Z rebecca purple

> color #14.8/a:2058-2064 cornflower blue

> color #14.8/a:2447-2451 gold

> color #14.8/a:2499-2506 green yellow

> color #14.8/a:2499-2506 green yellow target c

> ~show #14.8

> ~hbonds #14.8

> name to_show
> #14.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.8

> cartoon #14.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.8 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J61_c8.png height
> 600 width 600 supersample 3

> hide #!14.8 models

> hide #!12.8 models

> show #!14.9 models

> hide #14.9

> color #14.9/Y maroon

> color #14.9/Z rebecca purple

> color #14.9/a:2058-2064 cornflower blue

> color #14.9/a:2447-2451 gold

> color #14.9/a:2499-2506 green yellow

> color #14.9/a:2499-2506 green yellow target c

> ~show #14.9

> ~hbonds #14.9

> name to_show
> #14.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.9

> cartoon #14.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.9 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #14.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_d10_J62_c9.png height
> 600 width 600 supersample 3

> hide #!14.9 models

> hide #!12.9 models

> show #!22.1 models

> hide #22.1

> color #22.1/Y maroon

> color #22.1/Z rebecca purple

> color #22.1/a:2058-2064 cornflower blue

> color #22.1/a:2447-2451 gold

> color #22.1/a:2499-2506 green yellow

> color #22.1/a:2499-2506 green yellow target c

> ~show #22.1

> ~hbonds #22.1

> name to_show
> #22.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.1

> cartoon #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.1 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #22.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J111_ape.png height
> 600 width 600 supersample 3

> hide #!22.1 models

> hide #!21.1 models

> show #!22.2 models

> hide #22.2

> color #22.2/Y maroon

> color #22.2/Z rebecca purple

> color #22.2/a:2058-2064 cornflower blue

> color #22.2/a:2447-2451 gold

> color #22.2/a:2499-2506 green yellow

> color #22.2/a:2499-2506 green yellow target c

> ~show #22.2

> ~hbonds #22.2

> name to_show
> #22.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.2

> cartoon #22.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #22.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J112_ap.png height
> 600 width 600 supersample 3

> hide #!22.2 models

> hide #!21.2 models

> show #!22.3 models

> hide #22.3

> color #22.3/Y maroon

> color #22.3/Z rebecca purple

> color #22.3/a:2058-2064 cornflower blue

> color #22.3/a:2447-2451 gold

> color #22.3/a:2499-2506 green yellow

> color #22.3/a:2499-2506 green yellow target c

> ~show #22.3

> ~hbonds #22.3

> name to_show
> #22.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.3

> cartoon #22.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #22.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J113_pe.png height
> 600 width 600 supersample 3

> hide #!22.3 models

> hide #!21.3 models

> show #!22.4 models

> hide #22.4

> color #22.4/Y maroon

> color #22.4/Z rebecca purple

> color #22.4/a:2058-2064 cornflower blue

> color #22.4/a:2447-2451 gold

> color #22.4/a:2499-2506 green yellow

> color #22.4/a:2499-2506 green yellow target c

> ~show #22.4

> ~hbonds #22.4

> name to_show
> #22.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.4

> cartoon #22.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #22.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J124_e.png height
> 600 width 600 supersample 3

> hide #!22.4 models

> hide #!21.4 models

> show #!25.10 models

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J239_c0.png height
> 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J240_c1.png height
> 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J241_c2.png height
> 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J242_c3.png height
> 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J243_c4.png height
> 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,1

> hide #!25.5 models

> graphics quality 6

> show #!25.3 models

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J242_c3.png height
> 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J243_c4.png height
> 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.4 models

> show #!25.5 models

> hide #!25.4 models

> show #!25.6 models

> hide #!25.5 models

> show #!25.5 models

> hide #!25.6 models

> show #!25.4 models

> hide #!25.5 models

> show #!25.3 models

> hide #!25.4 models

> show #!25.4 models

> hide #!25.3 models

> hide #!25.4 models

> show #!25.3 models

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J243_c4.png height
> 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> show #!25.5 models

[Repeated 1 time(s)]

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J244_c5.png height
> 600 width 600 supersample 3

> hide #!25.5 models

> hide #!23.5 models

> show #!25.6 models

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

> color #25.6/a:2058-2064 cornflower blue

> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J245_c6.png height
> 600 width 600 supersample 3

> hide #!25.6 models

> hide #!23.6 models

> show #!25.7 models

> hide #25.7

> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J246_c7.png height
> 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J247_c8.png height
> 600 width 600 supersample 3

> hide #!25.8 models

> hide #!23.8 models

> show #!25.9 models

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J248_c9.png height
> 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> view list

Named views: A2503_view4_map, A2503_view5_map  

> view A2503_view5_map

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!1.2 models

> show #!1.1 models

> volume #1.1 level 0.015

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view5/A2503_view5_8emm.png height 600
> width 600 supersample 3

Directory "/Users/dalar193/Desktop/A2503_view5" does not exist  

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> show #!1.6 models

> volume #1.6 level 0.01

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> ~show #1.7

> ~hbonds #1.7

> name to_show
> #1.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5/A2503_view5_8cgk.png height 600
> width 600 supersample 3

Directory "/Users/dalar193/Desktop/A2503_view5" does not exist  

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> show #!1.8 models

> volume #1.8 level 0.11

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> ~show #1.9

> ~hbonds #1.9

> name to_show
> #1.9/A:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> volume #1.8 color black transparency 0.8

> volume zone #1.8 nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5/A2503_view5_7bv8.png height 600
> width 600 supersample 3

Directory "/Users/dalar193/Desktop/A2503_view5" does not exist  

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> show #!1.10 models

> volume #1.10 level 0.025

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> ~show #1.11

> ~hbonds #1.11

> name to_show
> #1.11/BA:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> volume #1.10 color black transparency 0.8

> volume zone #1.10 nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view5/A2503_view5_7o1a.png height 600
> width 600 supersample 3

Directory "/Users/dalar193/Desktop/A2503_view5" does not exist  

> hide #!1.11 models

> hide #!1.10 models

> show #!1.14 models

> show #!1.13 models

> volume #1.13 level 0.01

> hide #1.14

> color #1.14/Y maroon

> color #1.14/Z rebecca purple

> color #1.14/a:2058-2064 cornflower blue

> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> ~show #1.14

> ~hbonds #1.14

> name to_show
> #1.14/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

> volume #1.13 color black transparency 0.8

> volume zone #1.13 nearAtoms #1.14/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5/A2503_view5_8cam.png height 600
> width 600 supersample 3

Directory "/Users/dalar193/Desktop/A2503_view5" does not exist  

> hide #!1.14 models

> hide #!1.13 models

> show #!1.2 models

> show #!1.1 models

> volume #1.1 level 0.015

> hide #1.2

> color #1.2/Y maroon

> color #1.2/Z rebecca purple

> color #1.2/a:2058-2064 cornflower blue

> color #1.2/a:2447-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2499-2506 green yellow target c

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon #1.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.2 60 target c

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_8emm.png height
> 600 width 600 supersample 3

> hide #!1.2 models

> hide #!1.1 models

> show #!1.7 models

> show #!1.6 models

> volume #1.6 level 0.01

> hide #1.7

> color #1.7/Y maroon

> color #1.7/Z rebecca purple

> color #1.7/a:2058-2064 cornflower blue

> color #1.7/a:2447-2451 gold

> color #1.7/a:2499-2506 green yellow

> color #1.7/a:2499-2506 green yellow target c

> ~show #1.7

> ~hbonds #1.7

> name to_show
> #1.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.7

> cartoon #1.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.7 60 target c

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_8cgk.png height
> 600 width 600 supersample 3

> hide #!1.7 models

> hide #!1.6 models

> show #!1.9 models

> show #!1.8 models

> volume #1.8 level 0.11

> hide #1.9

> color #1.9/Y maroon

> color #1.9/Z rebecca purple

> color #1.9/A:2058-2064 cornflower blue

> color #1.9/A:2447-2451 gold

> color #1.9/A:2499-2506 green yellow

> color #1.9/A:2499-2506 green yellow target c

> ~show #1.9

> ~hbonds #1.9

> name to_show
> #1.9/A:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.9

> cartoon #1.9/A:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.9 60 target c

> volume #1.8 color black transparency 0.8

> volume zone #1.8 nearAtoms #1.9/A:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_7bv8.png height
> 600 width 600 supersample 3

> hide #!1.9 models

> hide #!1.8 models

> show #!1.11 models

> show #!1.10 models

> volume #1.10 level 0.025

> hide #1.11

> color #1.11/Y maroon

> color #1.11/B8 rebecca purple

> color #1.11/BA:2058-2064 cornflower blue

> color #1.11/BA:2447-2451 gold

> color #1.11/BA:2499-2506 green yellow

> color #1.11/BA:2499-2506 green yellow target c

> ~show #1.11

> ~hbonds #1.11

> name to_show
> #1.11/BA:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/B8:73-76,101

> show to_show

> ~cartoon #1.11

> cartoon #1.11/BA:2058-2064,2499-2506,2447-2451/Y:73-76/B8:73-76

> transparency #1.11 60 target c

> volume #1.10 color black transparency 0.8

> volume zone #1.10 nearAtoms #1.11/BA:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> bond #1.11/B5:24@C/B8:76@O3'

Created 0 bonds  

> cartoon #1.11/B5

> style #1.11/B5' ball

Changed 0 atom styles  

> size #1.11/B5/B8:76@O3' ballScale 0.10 stickRadius 0.06

Changed 152 bond radii, 1 ball scales  

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_7o1a.png height
> 600 width 600 supersample 3

> hide #!1.11 models

> hide #!1.10 models

> show #!1.14 models

> show #!1.13 models

> volume #1.13 level 0.01

> hide #1.14

> color #1.14/Y maroon

> color #1.14/Z rebecca purple

> color #1.14/a:2058-2064 cornflower blue

> color #1.14/a:2447-2451 gold

> color #1.14/a:2499-2506 green yellow

> color #1.14/a:2499-2506 green yellow target c

> ~show #1.14

> ~hbonds #1.14

> name to_show
> #1.14/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.14

> cartoon #1.14/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #1.14 60 target c

> volume #1.13 color black transparency 0.8

> volume zone #1.13 nearAtoms #1.14/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_8cam.png height
> 600 width 600 supersample 3

> hide #!1.14 models

> hide #!1.13 models

> show #!6.10 models

> show #!4.10 models

> volume #4.10 level 0.55

> hide #6.10

> color #6.10/Y maroon

> color #6.10/Z rebecca purple

> color #6.10/a:2058-2064 cornflower blue

> color #6.10/a:2447-2451 gold

> color #6.10/a:2499-2506 green yellow

> color #6.10/a:2499-2506 green yellow target c

> ~show #6.10

> ~hbonds #6.10

> name to_show
> #6.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.10

> cartoon #6.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.10 60 target c

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J83_cl0.png
> height 600 width 600 supersample 3

> hide #!6.10 models

> hide #!4.10 models

> show #!6.1 models

> show #!4.1 models

> volume #4.1 level 0.6

> hide #6.1

> color #6.1/Y maroon

> color #6.1/Z rebecca purple

> color #6.1/a:2058-2064 cornflower blue

> color #6.1/a:2447-2451 gold

> color #6.1/a:2499-2506 green yellow

> color #6.1/a:2499-2506 green yellow target c

> ~show #6.1

> ~hbonds #6.1

> name to_show
> #6.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.1

> cartoon #6.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.1 60 target c

> volume #4.1 color black transparency 0.8

> volume zone #4.1 nearAtoms #6.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J84_cl1.png
> height 600 width 600 supersample 3

> hide #!6.1 models

> hide #!4.1 models

> show #!6.2 models

> show #!4.2 models

> volume #4.2 level 0.7

> hide #6.2

> color #6.2/Y maroon

> color #6.2/Z rebecca purple

> color #6.2/a:2058-2064 cornflower blue

> color #6.2/a:2447-2451 gold

> color #6.2/a:2499-2506 green yellow

> color #6.2/a:2499-2506 green yellow target c

> ~show #6.2

> ~hbonds #6.2

> name to_show
> #6.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.2

> cartoon #6.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.2 60 target c

> volume #4.2 color black transparency 0.8

> volume zone #4.2 nearAtoms #6.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J85_cl2.png
> height 600 width 600 supersample 3

> hide #!6.2 models

> hide #!4.2 models

> show #!6.3 models

> show #!4.3 models

> volume #4.3 level 0.6

> hide #6.3

> color #6.3/Y maroon

> color #6.3/Z rebecca purple

> color #6.3/a:2058-2064 cornflower blue

> color #6.3/a:2447-2451 gold

> color #6.3/a:2499-2506 green yellow

> color #6.3/a:2499-2506 green yellow target c

> ~show #6.3

> ~hbonds #6.3

> name to_show
> #6.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.3

> cartoon #6.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.3 60 target c

> volume #4.3 color black transparency 0.8

> volume zone #4.3 nearAtoms #6.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J86_cl3.png
> height 600 width 600 supersample 3

> hide #!6.3 models

> hide #!4.3 models

> show #!6.4 models

> show #!4.4 models

> volume #4.4 level 0.65

> hide #6.4

> color #6.4/Y maroon

> color #6.4/Z rebecca purple

> color #6.4/a:2058-2064 cornflower blue

> color #6.4/a:2447-2451 gold

> color #6.4/a:2499-2506 green yellow

> color #6.4/a:2499-2506 green yellow target c

> ~show #6.4

> ~hbonds #6.4

> name to_show
> #6.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.4

> cartoon #6.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.4 60 target c

> volume #4.4 color black transparency 0.8

> volume zone #4.4 nearAtoms #6.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J87_cl4.png
> height 600 width 600 supersample 3

> hide #!6.4 models

> hide #!4.4 models

> show #!6.5 models

> show #!4.5 models

> volume #4.5 level 0.65

> hide #6.5

> color #6.5/Y maroon

> color #6.5/Z rebecca purple

> color #6.5/a:2058-2064 cornflower blue

> color #6.5/a:2447-2451 gold

> color #6.5/a:2499-2506 green yellow

> color #6.5/a:2499-2506 green yellow target c

> ~show #6.5

> ~hbonds #6.5

> name to_show
> #6.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.5

> cartoon #6.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.5 60 target c

> volume #4.5 color black transparency 0.8

> volume zone #4.5 nearAtoms #6.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J88_cl5.png
> height 600 width 600 supersample 3

> hide #!6.5 models

> hide #!4.5 models

> show #!6.6 models

> show #!4.6 models

> volume #4.6 level 0.6

> hide #6.6

> color #6.6/Y maroon

> color #6.6/Z rebecca purple

> color #6.6/a:2058-2064 cornflower blue

> color #6.6/a:2447-2451 gold

> color #6.6/a:2499-2506 green yellow

> color #6.6/a:2499-2506 green yellow target c

> ~show #6.6

> ~hbonds #6.6

> name to_show
> #6.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.6

> cartoon #6.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.6 60 target c

> volume #4.6 color black transparency 0.8

> volume zone #4.6 nearAtoms #6.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> ~show #6.6/a:2059-2060

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J89_cl6.png
> height 600 width 600 supersample 3

> hide #!6.6 models

> hide #!4.6 models

> show #!6.7 models

> show #!4.7 models

> volume #4.7 level 0.65

> hide #6.7

> color #6.7/Y maroon

> color #6.7/Z rebecca purple

> color #6.7/a:2058-2064 cornflower blue

> color #6.7/a:2447-2451 gold

> color #6.7/a:2499-2506 green yellow

> color #6.7/a:2499-2506 green yellow target c

> ~show #6.7

> ~hbonds #6.7

> name to_show
> #6.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.7

> cartoon #6.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.7 60 target c

> volume #4.7 color black transparency 0.8

> volume zone #4.7 nearAtoms #6.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J90_cl7.png
> height 600 width 600 supersample 3

> hide #!6.7 models

> hide #!4.7 models

> show #!6.8 models

> show #!4.8 models

> volume #4.8 level 0.55

> hide #6.8

> color #6.8/Y maroon

> color #6.8/Z rebecca purple

> color #6.8/a:2058-2064 cornflower blue

> color #6.8/a:2447-2451 gold

> color #6.8/a:2499-2506 green yellow

> color #6.8/a:2499-2506 green yellow target c

> ~show #6.8

> ~hbonds #6.8

> name to_show
> #6.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.8

> cartoon #6.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.8 60 target c

> volume #4.8 color black transparency 0.8

> volume zone #4.8 nearAtoms #6.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J91_cl8.png
> height 600 width 600 supersample 3

> hide #!6.8 models

> hide #!4.8 models

> show #!6.9 models

> show #!4.9 models

> volume #4.9 level 0.55

> hide #6.9

> color #6.9/Y maroon

> color #6.9/Z rebecca purple

> color #6.9/a:2058-2064 cornflower blue

> color #6.9/a:2447-2451 gold

> color #6.9/a:2499-2506 green yellow

> color #6.9/a:2499-2506 green yellow target c

> ~show #6.9

> ~hbonds #6.9

> name to_show
> #6.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #6.9

> cartoon #6.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #6.9 60 target c

> volume #4.9 color black transparency 0.8

> volume zone #4.9 nearAtoms #6.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d9_J92_cl9.png
> height 600 width 600 supersample 3

> hide #!6.9 models

> hide #!4.9 models

> show #!14.10 models

> show #!12.10 models

> volume #12.10 level 0.5

> hide #14.10

> color #14.10/Y maroon

> color #14.10/Z rebecca purple

> color #14.10/a:2058-2064 cornflower blue

> color #14.10/a:2447-2451 gold

> color #14.10/a:2499-2506 green yellow

> color #14.10/a:2499-2506 green yellow target c

> ~show #14.10

> ~hbonds #14.10

> name to_show
> #14.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.10

> cartoon #14.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.10 60 target c

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J53_c0.png
> height 600 width 600 supersample 3

> hide #!14.10 models

> hide #!12.10 models

> show #!14.1 models

> show #!12.1 models

> volume #12.1 level 0.5

> hide #14.1

> color #14.1/Y maroon

> color #14.1/Z rebecca purple

> color #14.1/a:2058-2064 cornflower blue

> color #14.1/a:2447-2451 gold

> color #14.1/a:2499-2506 green yellow

> color #14.1/a:2499-2506 green yellow target c

> ~show #14.1

> ~hbonds #14.1

> name to_show
> #14.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.1

> cartoon #14.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.1 60 target c

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J54_c1.png
> height 600 width 600 supersample 3

> hide #!14.1 models

> hide #!12.1 models

> show #!14.2 models

> show #!12.2 models

> volume #12.2 level 0.5

> hide #14.2

> color #14.2/Y maroon

> color #14.2/Z rebecca purple

> color #14.2/a:2058-2064 cornflower blue

> color #14.2/a:2447-2451 gold

> color #14.2/a:2499-2506 green yellow

> color #14.2/a:2499-2506 green yellow target c

> ~show #14.2

> ~hbonds #14.2

> name to_show
> #14.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.2

> cartoon #14.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.2 60 target c

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J55_c2.png
> height 600 width 600 supersample 3

> hide #!14.2 models

> hide #!12.2 models

> show #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.5

> hide #14.3

> color #14.3/Y maroon

> color #14.3/Z rebecca purple

> color #14.3/a:2058-2064 cornflower blue

> color #14.3/a:2447-2451 gold

> color #14.3/a:2499-2506 green yellow

> color #14.3/a:2499-2506 green yellow target c

> ~show #14.3

> ~hbonds #14.3

> name to_show
> #14.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.3

> cartoon #14.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.3 60 target c

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J56_c3.png
> height 600 width 600 supersample 3

> hide #!14.3 models

> hide #!12.3 models

> show #!14.4 models

> show #!12.4 models

> volume #12.4 level 0.5

> hide #14.4

> color #14.4/Y maroon

> color #14.4/Z rebecca purple

> color #14.4/a:2058-2064 cornflower blue

> color #14.4/a:2447-2451 gold

> color #14.4/a:2499-2506 green yellow

> color #14.4/a:2499-2506 green yellow target c

> ~show #14.4

> ~hbonds #14.4

> name to_show
> #14.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.4

> cartoon #14.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.4 60 target c

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J57_c4.png
> height 600 width 600 supersample 3

> hide #!14.4 models

> hide #!12.4 models

> show #!14.5 models

> show #!12.5 models

> volume #12.5 level 0.5

> hide #14.5

> color #14.5/Y maroon

> color #14.5/Z rebecca purple

> color #14.5/a:2058-2064 cornflower blue

> color #14.5/a:2447-2451 gold

> color #14.5/a:2499-2506 green yellow

> color #14.5/a:2499-2506 green yellow target c

> ~show #14.5

> ~hbonds #14.5

> name to_show
> #14.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.5

> cartoon #14.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.5 60 target c

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J58_c5.png
> height 600 width 600 supersample 3

> hide #!14.5 models

> hide #!12.5 models

> show #!14.6 models

> show #!12.6 models

> volume #12.6 level 0.5

> hide #14.6

> color #14.6/Y maroon

> color #14.6/Z rebecca purple

> color #14.6/a:2058-2064 cornflower blue

> color #14.6/a:2447-2451 gold

> color #14.6/a:2499-2506 green yellow

> color #14.6/a:2499-2506 green yellow target c

> ~show #14.6

> ~hbonds #14.6

> name to_show
> #14.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.6

> cartoon #14.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.6 60 target c

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J59_c6.png
> height 600 width 600 supersample 3

> hide #!14.6 models

> hide #!12.6 models

> show #!14.7 models

> show #!12.7 models

> volume #12.7 level 0.5

> hide #14.7

> color #14.7/Y maroon

> color #14.7/Z rebecca purple

> color #14.7/a:2058-2064 cornflower blue

> color #14.7/a:2447-2451 gold

> color #14.7/a:2499-2506 green yellow

> color #14.7/a:2499-2506 green yellow target c

> ~show #14.7

> ~hbonds #14.7

> name to_show
> #14.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.7

> cartoon #14.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.7 60 target c

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J60_c7.png
> height 600 width 600 supersample 3

> hide #!14.7 models

> hide #!12.7 models

> show #!14.8 models

> show #!12.8 models

> volume #12.8 level 0.5

> hide #14.8

> color #14.8/Y maroon

> color #14.8/Z rebecca purple

> color #14.8/a:2058-2064 cornflower blue

> color #14.8/a:2447-2451 gold

> color #14.8/a:2499-2506 green yellow

> color #14.8/a:2499-2506 green yellow target c

> ~show #14.8

> ~hbonds #14.8

> name to_show
> #14.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.8

> cartoon #14.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.8 60 target c

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J61_c8.png
> height 600 width 600 supersample 3

> hide #!14.8 models

> hide #!12.8 models

> show #!14.9 models

> show #!12.9 models

> volume #12.9 level 0.5

> hide #14.9

> color #14.9/Y maroon

> color #14.9/Z rebecca purple

> color #14.9/a:2058-2064 cornflower blue

> color #14.9/a:2447-2451 gold

> color #14.9/a:2499-2506 green yellow

> color #14.9/a:2499-2506 green yellow target c

> ~show #14.9

> ~hbonds #14.9

> name to_show
> #14.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #14.9

> cartoon #14.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #14.9 60 target c

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_d10_J62_c9.png
> height 600 width 600 supersample 3

> hide #!14.9 models

> hide #!12.9 models

> show #!22.1 models

> show #!21.1 models

> volume #21.1 level 0.4

> hide #22.1

> color #22.1/Y maroon

> color #22.1/Z rebecca purple

> color #22.1/a:2058-2064 cornflower blue

> color #22.1/a:2447-2451 gold

> color #22.1/a:2499-2506 green yellow

> color #22.1/a:2499-2506 green yellow target c

> ~show #22.1

> ~hbonds #22.1

> name to_show
> #22.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.1

> cartoon #22.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.1 60 target c

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J111_ape.png
> height 600 width 600 supersample 3

> hide #!22.1 models

> hide #!21.1 models

> show #!22.2 models

> show #!21.2 models

> volume #21.2 level 0.4

> hide #22.2

> color #22.2/Y maroon

> color #22.2/Z rebecca purple

> color #22.2/a:2058-2064 cornflower blue

> color #22.2/a:2447-2451 gold

> color #22.2/a:2499-2506 green yellow

> color #22.2/a:2499-2506 green yellow target c

> ~show #22.2

> ~hbonds #22.2

> name to_show
> #22.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.2

> cartoon #22.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.2 60 target c

> volume #21.2 color black transparency 0.8

> volume zone #21.2 nearAtoms #22.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J112_ap.png
> height 600 width 600 supersample 3

> hide #!22.2 models

> hide #!21.2 models

> show #!22.3 models

> show #!21.3 models

> volume #21.3 level 0.4

> hide #22.3

> color #22.3/Y maroon

> color #22.3/Z rebecca purple

> color #22.3/a:2058-2064 cornflower blue

> color #22.3/a:2447-2451 gold

> color #22.3/a:2499-2506 green yellow

> color #22.3/a:2499-2506 green yellow target c

> ~show #22.3

> ~hbonds #22.3

> name to_show
> #22.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.3

> cartoon #22.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.3 60 target c

> volume #21.3 color black transparency 0.8

> volume zone #21.3 nearAtoms #22.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J113_pe.png
> height 600 width 600 supersample 3

> hide #!22.3 models

> hide #!21.3 models

> show #!22.4 models

> show #!21.4 models

> volume #21.4 level 0.4

> hide #22.4

> color #22.4/Y maroon

> color #22.4/Z rebecca purple

> color #22.4/a:2058-2064 cornflower blue

> color #22.4/a:2447-2451 gold

> color #22.4/a:2499-2506 green yellow

> color #22.4/a:2499-2506 green yellow target c

> ~show #22.4

> ~hbonds #22.4

> name to_show
> #22.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #22.4

> cartoon #22.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #22.4 60 target c

> volume #21.4 color black transparency 0.8

> volume zone #21.4 nearAtoms #22.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J124_e.png
> height 600 width 600 supersample 3

> hide #!22.4 models

> hide #!21.4 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J239_c0.png
> height 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J240_c1.png
> height 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J241_c2.png
> height 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume #23.3 color black transparency 0.8

> volume zone #23.3 nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J242_c3.png
> height 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> show #!23.4 models

> volume #23.4 level 0.1

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J243_c4.png
> height 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> show #!23.5 models

> volume #23.5 level 0.1

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J244_c5.png
> height 600 width 600 supersample 3

> hide #!25.5 models

> hide #!23.5 models

> show #!25.6 models

> show #!23.6 models

> volume #23.6 level 0.1

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

> color #25.6/a:2058-2064 cornflower blue

> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J245_c6.png
> height 600 width 600 supersample 3

> hide #!25.6 models

> hide #!23.6 models

> show #!25.7 models

> show #!23.7 models

> volume #23.7 level 0.1

> hide #25.7

> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J246_c7.png
> height 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> show #!23.8 models

> volume #23.8 level 0.1

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J247_c8.png
> height 600 width 600 supersample 3

> hide #!25.8 models

> hide #!23.8 models

> show #!25.9 models

> show #!23.9 models

> volume #23.9 level 0.1

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J248_c9.png
> height 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> close #25.1-10

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc0-J239-coot-3-self-restr.pdb id 25.10 name dE_J239_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc0-J239-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J239_c0 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc1-J240-coot-3-self-restr.pdb id 25.1 name dE_J240_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc1-J240-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J240_c1 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc2-J241-coot-3-self-restr.pdb id 25.2 name dE_J241_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc2-J241-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J241_c2 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc3-J242-coot-3-self-restr.pdb id 25.3 name dE_J242_c3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc3-J242-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J242_c3 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc4-J243-coot-3-self-restr.pdb id 25.4 name dE_J243_c4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc4-J243-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J243_c4 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc5-J244-coot-3-self-restr.pdb id 25.5 name dE_J244_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc5-J244-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J244_c5 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc6-J245-coot-3-self-restr.pdb id 25.6 name dE_J245_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc6-J245-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J245_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc7-J246-coot-3-self-restr.pdb id 25.7 name dE_J246_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc7-J246-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J246_c7 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc8-J247-coot-3-self-restr.pdb id 25.8 name dE_J247_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc8-J247-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J247_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc9-J248-coot-3-self-restr.pdb id 25.9 name dE_J248_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc9-J248-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J248_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #25 dE-PTC-models

> style #!25.1-10 stick

Changed 102995 atom styles  

> hide #!25.10 models

> hide #!25.9 models

> hide #!25.8 models

> hide #!25.7 models

> hide #!25.6 models

> hide #!25.5 models

> hide #!25.4 models

> hide #!25.3 models

> hide #!25.2 models

> hide #!25.1 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

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> color #25.10/Y maroon

> color #25.10/Z rebecca purple

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> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume #23.10 color black transparency 0.8

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J239_c0.png
> height 600 width 600 supersample 3

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> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

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> color #25.1/Y maroon

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> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J240_c1.png
> height 600 width 600 supersample 3

> hide #!25.1 models

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> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

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> color #25.2/Y maroon

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> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J241_c2.png
> height 600 width 600 supersample 3

> hide #!25.2 models

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> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

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> color #25.3/Y maroon

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> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume #23.3 color black transparency 0.8

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> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J242_c3.png
> height 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> show #!23.4 models

> volume #23.4 level 0.1

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J243_c4.png
> height 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> show #!23.5 models

> volume #23.5 level 0.1

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> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J244_c5.png
> height 600 width 600 supersample 3

> hide #!25.5 models

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> show #!25.6 models

> show #!23.6 models

> volume #23.6 level 0.1

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

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> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J245_c6.png
> height 600 width 600 supersample 3

> hide #!25.6 models

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> show #!25.7 models

> show #!23.7 models

> volume #23.7 level 0.1

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> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J246_c7.png
> height 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> show #!23.8 models

> volume #23.8 level 0.1

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J247_c8.png
> height 600 width 600 supersample 3

> hide #!25.8 models

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> show #!25.9 models

> show #!23.9 models

> volume #23.9 level 0.1

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view5_map/A2503_view5_map_dE_J248_c9.png
> height 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> show #!25.1 models

> view list

Named views: A2503_view4_map, A2503_view5_map  

> view A2503_view4_map

> hide #!25.1 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J239_c0.png height
> 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J240_c1.png height
> 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J241_c2.png height
> 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume #23.3 color black transparency 0.8

> volume zone #23.3 nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J242_c3.png height
> 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> show #!23.4 models

> volume #23.4 level 0.1

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J243_c4.png height
> 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> show #!23.5 models

> volume #23.5 level 0.1

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J244_c5.png height
> 600 width 600 supersample 3

> hide #!25.5 models

> hide #!23.5 models

> show #!25.6 models

> show #!23.6 models

> volume #23.6 level 0.1

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

> color #25.6/a:2058-2064 cornflower blue

> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J245_c6.png height
> 600 width 600 supersample 3

> hide #!25.6 models

> hide #!23.6 models

> show #!25.7 models

> show #!23.7 models

> volume #23.7 level 0.1

> hide #25.7

> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J246_c7.png height
> 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> show #!23.8 models

> volume #23.8 level 0.1

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J247_c8.png height
> 600 width 600 supersample 3

> hide #!25.8 models

> hide #!23.8 models

> show #!25.9 models

> show #!23.9 models

> volume #23.9 level 0.1

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J248_c9.png height
> 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> show #!25.10 models

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J239_c0.png height
> 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J240_c1.png height
> 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J241_c2.png height
> 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J242_c3.png height
> 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J243_c4.png height
> 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J244_c5.png height
> 600 width 600 supersample 3

> hide #!25.5 models

> hide #!23.5 models

> show #!25.6 models

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

> color #25.6/a:2058-2064 cornflower blue

> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J245_c6.png height
> 600 width 600 supersample 3

> hide #!25.6 models

> hide #!23.6 models

> show #!25.7 models

> hide #25.7

> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J246_c7.png height
> 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J247_c8.png height
> 600 width 600 supersample 3

> hide #!25.8 models

> hide #!23.8 models

> show #!25.9 models

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume # color black transparency 0.8

Expected a density maps specifier or a keyword  

> volume zone # nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

Missing or invalid "volumes" argument: invalid density maps specifier  

> save /Users/dalar193/Desktop/A2503_view4/A2503_view4_dE_J248_c9.png height
> 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> show #!25.10 models

> show #!23.10 models

> volume #23.10 level 0.1

> hide #25.10

> color #25.10/Y maroon

> color #25.10/Z rebecca purple

> color #25.10/a:2058-2064 cornflower blue

> color #25.10/a:2447-2451 gold

> color #25.10/a:2499-2506 green yellow

> color #25.10/a:2499-2506 green yellow target c

> ~show #25.10

> ~hbonds #25.10

> name to_show
> #25.10/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.10

> cartoon #25.10/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.10 60 target c

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J239_c0.png
> height 600 width 600 supersample 3

> hide #!25.10 models

> hide #!23.10 models

> show #!25.1 models

> show #!23.1 models

> volume #23.1 level 0.1

> hide #25.1

> color #25.1/Y maroon

> color #25.1/Z rebecca purple

> color #25.1/a:2058-2064 cornflower blue

> color #25.1/a:2447-2451 gold

> color #25.1/a:2499-2506 green yellow

> color #25.1/a:2499-2506 green yellow target c

> ~show #25.1

> ~hbonds #25.1

> name to_show
> #25.1/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.1

> cartoon #25.1/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.1 60 target c

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J240_c1.png
> height 600 width 600 supersample 3

> hide #!25.1 models

> hide #!23.1 models

> show #!25.2 models

> show #!23.2 models

> volume #23.2 level 0.1

> hide #25.2

> color #25.2/Y maroon

> color #25.2/Z rebecca purple

> color #25.2/a:2058-2064 cornflower blue

> color #25.2/a:2447-2451 gold

> color #25.2/a:2499-2506 green yellow

> color #25.2/a:2499-2506 green yellow target c

> ~show #25.2

> ~hbonds #25.2

> name to_show
> #25.2/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.2

> cartoon #25.2/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.2 60 target c

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J241_c2.png
> height 600 width 600 supersample 3

> hide #!25.2 models

> hide #!23.2 models

> show #!25.3 models

> show #!23.3 models

> volume #23.3 level 0.1

> hide #25.3

> color #25.3/Y maroon

> color #25.3/Z rebecca purple

> color #25.3/a:2058-2064 cornflower blue

> color #25.3/a:2447-2451 gold

> color #25.3/a:2499-2506 green yellow

> color #25.3/a:2499-2506 green yellow target c

> ~show #25.3

> ~hbonds #25.3

> name to_show
> #25.3/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.3

> cartoon #25.3/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.3 60 target c

> volume #23.3 color black transparency 0.8

> volume zone #23.3 nearAtoms #25.3/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J242_c3.png
> height 600 width 600 supersample 3

> hide #!25.3 models

> hide #!23.3 models

> show #!25.4 models

> show #!23.4 models

> volume #23.4 level 0.1

> hide #25.4

> color #25.4/Y maroon

> color #25.4/Z rebecca purple

> color #25.4/a:2058-2064 cornflower blue

> color #25.4/a:2447-2451 gold

> color #25.4/a:2499-2506 green yellow

> color #25.4/a:2499-2506 green yellow target c

> ~show #25.4

> ~hbonds #25.4

> name to_show
> #25.4/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.4

> cartoon #25.4/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.4 60 target c

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J243_c4.png
> height 600 width 600 supersample 3

> hide #!25.4 models

> hide #!23.4 models

> show #!25.5 models

> show #!23.5 models

> volume #23.5 level 0.1

> hide #25.5

> color #25.5/Y maroon

> color #25.5/Z rebecca purple

> color #25.5/a:2058-2064 cornflower blue

> color #25.5/a:2447-2451 gold

> color #25.5/a:2499-2506 green yellow

> color #25.5/a:2499-2506 green yellow target c

> ~show #25.5

> ~hbonds #25.5

> name to_show
> #25.5/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.5

> cartoon #25.5/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.5 60 target c

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J244_c5.png
> height 600 width 600 supersample 3

> hide #!25.5 models

> hide #!23.5 models

> show #!25.6 models

> show #!23.6 models

> volume #23.6 level 0.1

> hide #25.6

> color #25.6/Y maroon

> color #25.6/Z rebecca purple

> color #25.6/a:2058-2064 cornflower blue

> color #25.6/a:2447-2451 gold

> color #25.6/a:2499-2506 green yellow

> color #25.6/a:2499-2506 green yellow target c

> ~show #25.6

> ~hbonds #25.6

> name to_show
> #25.6/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.6

> cartoon #25.6/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.6 60 target c

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J245_c6.png
> height 600 width 600 supersample 3

> hide #!25.6 models

> hide #!23.6 models

> show #!25.7 models

> show #!23.7 models

> volume #23.7 level 0.1

> hide #25.7

> color #25.7/Y maroon

> color #25.7/Z rebecca purple

> color #25.7/a:2058-2064 cornflower blue

> color #25.7/a:2447-2451 gold

> color #25.7/a:2499-2506 green yellow

> color #25.7/a:2499-2506 green yellow target c

> ~show #25.7

> ~hbonds #25.7

> name to_show
> #25.7/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.7

> cartoon #25.7/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.7 60 target c

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J246_c7.png
> height 600 width 600 supersample 3

> hide #!25.7 models

> hide #!23.7 models

> show #!25.8 models

> show #!23.8 models

> volume #23.8 level 0.1

> hide #25.8

> color #25.8/Y maroon

> color #25.8/Z rebecca purple

> color #25.8/a:2058-2064 cornflower blue

> color #25.8/a:2447-2451 gold

> color #25.8/a:2499-2506 green yellow

> color #25.8/a:2499-2506 green yellow target c

> ~show #25.8

> ~hbonds #25.8

> name to_show
> #25.8/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.8

> cartoon #25.8/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.8 60 target c

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J247_c8.png
> height 600 width 600 supersample 3

> hide #!25.8 models

> hide #!23.8 models

> show #!25.9 models

> show #!23.9 models

> volume #23.9 level 0.1

> hide #25.9

> color #25.9/Y maroon

> color #25.9/Z rebecca purple

> color #25.9/a:2058-2064 cornflower blue

> color #25.9/a:2447-2451 gold

> color #25.9/a:2499-2506 green yellow

> color #25.9/a:2499-2506 green yellow target c

> ~show #25.9

> ~hbonds #25.9

> name to_show
> #25.9/a:2058-2064,2499-2506,2447,2450-2451/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #25.9

> cartoon #25.9/a:2058-2064,2499-2506,2447-2451/Y:73-76/Z:73-76

> transparency #25.9 60 target c

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2058-2064,2499-2506,2447,2450,2451 &
> sideonly range 2

> save /Users/dalar193/Desktop/A2503_view4_map/A2503_view4_map_dE_J248_c9.png
> height 600 width 600 supersample 3

> hide #!25.9 models

> hide #!23.9 models

> show #!25.2 models

> hide #!25.2 models

> show #!25.3 models

> hide #!25.3 models

> show #!25.4 models

> show #!23.4 models

> hide #!25.4 models

> show #!25.4 models

> hide #!25.4 models

> show #!25.4 models

> show #!25.3 models

> hide #!25.3 models

> show #!25.3 models

> hide #!25.3 models

> show #!25.3 models

> hide #!25.3 models

> hide #!23.4 models

> hide #!25.4 models

> show #!6.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.2 models

> hide #!25.2 models

> show #!25.2 models

> hide #!25.2 models

> show #!25.2 models

> hide #!6.1 models

> show #!23.2 models

> hide #!25.2 models

> hide #!23.2 models

> show #!6.1 models

> show #!4.1 models

> view #6.1/Y:76

> show #6.1/a:2602

[Repeated 1 time(s)]

> show #6.1/a:2601-2603 target c

> show #6.1/a:2602/Y:75-76

> show #6.1/a:2601-2603 target c

> volume zone #4.1 nearAtoms #6.1/a:2602/Y:75-76

> show #6.1/a:2602/Y:75-76/v:2-4

> show #6.1/a:2601-2603 target c

> volume zone #4.1 nearAtoms #6.1/a:2602/Y:75-76

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603 target c

> volume zone #4.1 nearAtoms to_show_a

> hide #6.1

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603 target c

> volume zone #4.1 nearAtoms to_show_a

> hide #6.1

> ~cartoon

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603 target c

> volume zone #4.1 nearAtoms to_show_a

> hide #6.1

> ~cartoon

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603/Y:74-76 target c

> volume zone #4.1 nearAtoms to_show_a

> hide #6.1

> ~cartoon

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603/Y:74-76/v:2-5 target c

> volume zone #4.1 nearAtoms to_show_a

> hide #6.1

> ~cartoon

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603/Y:74-76/v:2-5 target c

> volume zone #4.1 nearAtoms to_show_a range 2

> hide #6.1

> ~cartoon

> name to_show_a #6.1/a:2602/Y:75-76/v:2-4

> show to_show_a

> show #6.1/a:2601-2603/Y:74-76/v:2-5 target a

> volume zone #4.1 nearAtoms to_show_a range 2

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/a:2602/Y:75-76/v:2-4

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/a:2602/Y:75-76/v:2-3

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/a:2602/Y:76/v:2-3

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/a:2602/v:2-3 | #6.1/Y:76 sidechain

Expected a keyword  

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/Y:76 sidechain

Expected a keyword  

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/Y:76 & sidechain

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/a:2602/v:2-3 | #6.1/Y:76 & sidechain

> hide #6.1

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:74-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:76

> view matrix

view matrix camera
0.22239,0.85399,0.47035,156.1,-0.59722,-0.26201,0.75808,209.36,0.77063,-0.44949,0.45176,156  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> show #1.2/Y:76

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #1.2

> hide #1.2

> show #!1.2 models

> show #1.2/Y:76

> show #1.2/Y:74-76

> show #1.2/Y:71-76

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:73-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:73-76

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> cartoon suppressBackboneDisplay false

> transparency 60 target c

> cartoon suppressBackboneDisplay false

> transparency 80 target c

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> color #1.2 white

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> color #1.2 white

> hide #1.2.3

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> color #1.2 white

> hide #1.2.2

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> color #1.2 white

> hide #1.2.2

> hide #6.1#1.2

> ~cartoon

> show #6.1/a:2601-2603/Y:72-76/v:2-5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76 & sidechain

> show #1.2/Y:72-76

> color #1.2 white

> hide #1.2.2

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> volume #4.1 level 0.5

> show #!5.1 models

> hide #!5.1 models

> show #!4.1 models

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/a:2602/Y:76

> ~cartoon

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/a:2602/Y:76

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/a:2602/Y:76

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/a:2602/Y:75-76

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/a:2602/Y:76 | #6.1/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> transparency #1.2 50

> transparency #1.2 50 target a

> color #1.2/Y maroon

> transparency #1.2 80 target a

> transparency #1.2 90 target a

> transparency #1.2 95 target a

> view matrix

view matrix camera
0.36563,0.76249,0.53378,157.06,-0.22955,-0.4819,0.84563,212.87,0.90201,-0.43171,-0.0011696,135.63  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> clip list

Using 2 clip planes:  
near offset -19.642, axis -0.534,-0.846,0.001, point 142.3,189.1,135.7)  
far offset 6.0401, axis 0.534,0.846,-0.001, point 128.6,167.4,135.7)  

> ~clip

> clip near -19.642 far 6.0401

> ~clip

> clip near point 142.3,189.1,135.7 far point 128.6,167.4,135.7

Invalid "near" argument: Expected 'off' or a number  

> ~clip

> clip near -19.642 far 6.0401

> save /Users/dalar193/Desktop/tmp.png supersample 4

> volume #4.1 level 0.55

> volume #4.1 level 0.6

> volume #4.1 level 0.65

> volume #4.1 level 0.45

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-4 | #6.1/Y:74-76 | #6.1/a:2602/Y:75 & sidechain

> view matrix camera
> 0.36563,0.76249,0.53378,157.06,-0.22955,-0.4819,0.84563,212.87,0.90201,-0.43171,-0.0011696,135.63

> color #6.1/a powder blue

> color #6.1/a light steel blue

> color #6.1/a cornflower blue

> color #6.1/a royal blue

> color #6.1/a steel blue

[Repeated 1 time(s)]

> color #6.1/v medium slate blue

> color #6.1/a steel blue

> color #6.1/v medium purple

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #a281e6ff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #a788e6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #ae92e6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #b59de6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #bca7e6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #beabe6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #b8a2e6ff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #a390ccff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #796b97ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #6d5f87ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #7c6d9aff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8878aaff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #9381b7ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #9785bdff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #9e8bc5ff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #917fb5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #907fb5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8670b5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #866fb5ff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8066b5ff

[Repeated 2 time(s)]

> color #6.1/a steel blue

> color #6.1/v #8066B5

> color #6.1 maroon

> color #6.1/a steel blue

> color #6.1/v #8066B5

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a steel blue

> color #6.1/v #8066B5

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a steel blue

> color #6.1/v #8066B5

> transparency #1.2 95 target a

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a steel blue

> color #6.1/v #8066B5

> transparency #1.2 95 target a

> volume color gray

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #89b6dbff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #80aacdff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #7ca4c6ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #7ba3c4ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #79a1c2ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #79a1c1ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #779fbfff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #789fbfff

[Repeated 1 time(s)]

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a 789FBF; color #6.1/v #8066B5;transparency #1.2 95 target a; vol
> color gray

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8066B5

> transparency #1.2 95 target a

> volume color gray

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8066b5ff

[Repeated 1 time(s)]

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #866fb5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8b77b5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #856cb5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #856db5ff

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #8770b5ff

[Repeated 1 time(s)]

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> transparency #1.2 95 target a

> volume color gray

> color #1.2#4.1#6.1.1#!1-6,10-14,20-23,25#!6.1 #000efeff

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> transparency #1.2 95 target a

> volume color gray

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> transparency #1.2 90 target a

> volume color gray

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> volume color gray

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> transparency #1.2 90 target a

> volume color gray

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> lighting soft

> lighting full

> lighting simple

> lighting full

[Repeated 1 time(s)]

> lighting simple

> lighting full

> save /Users/dalar193/Desktop/tmp.png supersample 4

> windowsize 800 600

> lighting full

[Repeated 1 time(s)]

> lightning full

Unknown command: lightning full  

> windowsize 800 600

> save /Users/dalar193/Desktop/tmp.png width 800 height 600 supersample 4

> lighting full

> save /Users/dalar193/Desktop/tmp.png width 800 height 600 supersample 4

> show #!1.2 models

> save /Users/dalar193/Desktop/tmp.png width 800 height 600 supersample 4

[Repeated 1 time(s)]

> show #6.1/a:2601-2603/Y:72-76/v:2-6

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> save /Users/dalar193/Desktop/tmp.png width 800 height 600 supersample 4

[Repeated 1 time(s)]

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:75-76 | #6.1/a:2602/Y:45 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> view matrix

view matrix camera
0.33419,0.64191,0.69012,165.63,-0.30645,-0.61842,0.72364,208.44,0.89129,-0.45331,-0.0099557,135.91  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> clip list

Using 2 clip planes:  
near offset -17.283, axis -0.690,-0.724,0.010, point 144.8,184.2,137.4)  
far offset 6.1765, axis 0.690,0.724,-0.010, point 128.6,167.2,137.6)  

> view matrix camera
> 0.33419,0.64191,0.69012,165.63,-0.30645,-0.61842,0.72364,208.44,0.89129,-0.45331,-0.0099557,135.91

> show #6.1/a:2601-2603/Y:72-76/v:2-6

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> color #1.2 white

> hide #1.2.2

> ~cartoon #6.1#1.2

> hide #6.1#1.2

> ~cartoon #6.1#1.2

> show #6.1/a:2601-2603/Y:72-76/v:2-6

> show #1.2/Y:72-76

> show #1.2/Y:72-76#6.1/Y:72-76 target c

> color #1.2 maroon

> hide #1.2.2

> hide #6.1#1.2

> ~cartoon #6.1#1.2

> show #6.1/a:2601-2603/Y:72-76/v:2-6

> show #1.2/Y:72-76

> color #1.2 maroon

> hide #1.2.2

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:76 | #6.1/a:2602/Y:75 & sidechain

> volume #4.1 level 0.5

> transparency #1.2 95 target a

> transparency #1.2 90 target a

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #789FBF

> color #6.1/v #8770B5

> transparency #1.2 90 target a

> volume color gray

> color #1.2/Y maroon

> color #6.1/Y maroon

> color #6.1/a #8770B5

> color #6.1/v #789FBF

> transparency #1.2 90 target a

> volume color gray

> save /Users/dalar193/Desktop/tmp.png width 800 height 600 supersample 4

> show #6.1/a:2551-2557

> show #6.1/a:2551-2557 target c

> show #6.1/a:2550-2558 target c

> show #6.1/Y:73-76 target c

> hide #6.1/a:2603

> transparency #6.1 70 target c

> transparency #6.1 60 target c

> transparency #6.1 70 target c

> show #6.1/a:2550-2558 target c

> color #6.1/a:2550-2558 orange

> color #6.1/a:2550-2558 coral

> color #6.1/a:2550-2558 dark orange

> color #6.1/a:2550-2558 light salmon

> color #6.1/a:2550-2558 forest green

> color #6.1/a:2550-2558 sea green

> color #6.1/a:2550-2558 medium sea green

> color #6.1/a:2550-2558 dark sea green

> color #6.1/a:2550-2558 cadet blue

> show #6.1/a:2580-2584 target ac

> show #6.1/a:2580-2586 target ac

> show #6.1/a:2580-2585 target ac

> ~show #6.1/a:2580-2585 target ac

> ~show #6.1/a:2580-2586 target ac

> show #6.1/a:2580-2585 target ac

> color #6.1/a:2580-2585 crimson

> hide #!1.2 models

> show #!1.2 models

> view matrix

view matrix camera
-0.82773,0.56075,0.02019,139.21,0.27475,0.43641,-0.85678,115.93,-0.48925,-0.70362,-0.51531,111.22  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:74-76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:73-76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 3 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75 & sidechain

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75 & sidechain | #6.1/a:2551-2557 & sideonly

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75 & sidechain | #6.1/a:2551-2557

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2602/Y:75&sidechain | #6.1/a:2551-2557

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | (#6.1/a:2602/Y:75&sidechain) | #6.1/a:2551-2557

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557

> ~cartoon

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557 | (#6.1/a:2602&sideonly)

> hide #!1.2 models

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557 | (#6.1/a:2602&sideonly) | #6.1/a:2580-2585

> show #6.1

> show #6.1/a:3019

> ~show #6.1/a:3019

> ~show #6.1

> show #6.1/a:2551-2557

> show #6.1/a:2550-2558 target c

> show #6.1/Y:73-76 target c

> hide #6.1/a:2603

> transparency #6.1 70 target c

> color #6.1/a:2550-2558 cadet blue

> show #6.1/a:2580-2585 target ac

> color #6.1/a:2580-2585 crimson

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557 | (#6.1/a:2602&sideonly) | #6.1/a:2580-2585

> ~cartoon

> show #6.1/a:2602-2603

> ~show #6.1/a:2602-2603

> show #6.1/a:2602

> show #6.1/a:2602 & sidechain

> ~show #6.1/a:2602

> show #6.1/a:2602 & sidechain

> show #6.1/a:2601

> ~show #6.1/a:2601

> show #6.1/a:2603

> ~show #6.1/a:2603

> show #6.1/a:2602

> show #6.1/a:2602&sideonly | #6.1/a:2602@C5',O3'

> ~show #6.1/a:2602

> show #6.1/a:2602&sideonly | #6.1/a:2602@C5',O3'

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> ~show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5'

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O5'

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O5',O3'

> ~show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O5',O3'

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/Y:72-76/v:2-6

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2551-2557 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019

> show #6.1/a:2580-2585,3019

> color #6.1/a:2580-2585,3019 crimson

> show #6.1/a:2550-2558

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2550-2558 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019

> lighting soft

> lighting full

> show #6.1/a:1672

> show #6.1/a:1671-1673

> show #1.12/a:1671-1673

> show #!1.12 models

> hide #1.12

> show #1.12/a:1671-1673

> show #1.12/a:1670-1674

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2550-2558 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1671

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2550-2558 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> view matrix camera
> -0.82773,0.56075,0.02019,139.21,0.27475,0.43641,-0.85678,115.93,-0.48925,-0.70362,-0.51531,111.22

> view matrix

view matrix camera
-0.80327,0.55343,-0.22016,125.45,0.45245,0.3266,-0.82984,121.86,-0.38735,-0.76617,-0.51276,115.69  
view matrix models
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 
  

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2580-2585,3019 crimson

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-3 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> color #1.12 gray

> view matrix

view matrix camera
-0.82811,0.53756,-0.1589,128.3,0.3332,0.24409,-0.91072,112.05,-0.45078,-0.80711,-0.38126,121.73  
view matrix models
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 
  

> view matrix camera
> -0.80327,0.55343,-0.22016,125.45,0.45245,0.3266,-0.82984,121.86,-0.38735,-0.76617,-0.51276,115.69

> view matrix camera
> -0.82811,0.53756,-0.1589,128.3,0.3332,0.24409,-0.91072,112.05,-0.45078,-0.80711,-0.38126,121.73

> view matrix

view matrix camera
-0.82811,0.53756,-0.1589,128.3,0.3332,0.24409,-0.91072,112.05,-0.45078,-0.80711,-0.38126,121.73  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> view matrix

view matrix camera
-0.77481,0.61188,-0.1589,128.12,0.35436,0.21221,-0.91072,112.16,-0.52353,-0.76194,-0.38126,121.53  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602&sidechain) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> hide #!6.1 models

> hide #!4.1 models

> show #!1.1 models

> show #!1.2 models

> hide #!1.2 models

> hide #!1.1 models

> ~transparency #1.2

Unknown command: ~transparency #1.2  

> ~transparancy #1.2

Unknown command: ~transparancy #1.2  

> transparancy #1.2

Unknown command: transparancy #1.2  

> transparency #1.2 0

> show #!1.2 models

> hide #!1.12 models

> hide #1.2

> show #1.2/a:2550-2558

> show #1.2/a:2602&sidechain | #1.2/a:2602@C5',O3'

> show #1.2/a:2580-2585,3019

> show #1.2/Y:72-76/v:2-6

> show #1.2/a:1670-1674

> color #1.2/a:2549-2559 cadet blue

> color #1.2/a:2602 #8770B5

> color #1.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume zone #1.1 range 2 nearAtoms #1.2/v:2-5 | #1.2/Y:72-76 | #1.2/a:2549-2559 | (#1.2/a:2602&sidechain) | #1.2/a:2580-2585 | #1.2/a:3019 | #1.2/a:1672

> transparency #1.2 0

> transparency #1.2 0 target a

> show #!1.1 models

> volume #1.1 level 0.012

> volume #1.1 level 0.011

> volume #1.1 level 0.014

> volume #1.1 level 0.013

> volume #1.1 level 0.014

> volume #1.1 level 0.015

[Repeated 1 time(s)]

> volume zone #1.1 range 2 nearAtoms #1.2/v:2-5 | #1.2/Y:72-76 | #1.2/a:2549-2559 | (#1.2/a:2602&sidechain) | #1.2/a:2580-2585 | #1.2/a:3019 | #1.2/a:1672

> show #!1.12 models

> show #!1.12#!4.1 models

> show #!1.12#!4.1#!6.1 models

> hide #!1.12#!4.1#!6.1 models

> hide #!1.1#!1.2 models

> show #!1.12#!4.1#!6.1 models

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> hide #!1.1#!1.2 models

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume #4.2 level 0.3

> volume #4.2 level 0.5

> volume #4.2 level 0.3

> hide #!6.2 models

> hide #!4.2 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2602&sidechain | #6.3/a:2602@C5',O3'

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | (#6.8/a:2602&sideonly) | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> hide #6.*

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2506&sidechain

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2506&sidechain

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2602&sidechain | #6.3/a:2602@C5',O3'

> show #6.3/a:2506&sidechain

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602,2506&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602,2506&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2506&sidechain

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602,2506&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | (#6.8/a:2602,2506&sideonly) | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2506&sidechain

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602,2506&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2506&sidechain

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602,2506&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2506&sidechain

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2506 green yellow

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2506&sidechain

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2602&sidechain | #6.3/a:2602@C5',O3'

> show #6.3/a:2506&sidechain

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2506 green yellow

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602,2506&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2506 green yellow

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2506 green yellow

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602,2506&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2506&sidechain

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602,2506&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2506 green yellow

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | (#6.8/a:2602,2506&sideonly) | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2506&sidechain

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2506 green yellow

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602,2506&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2506&sidechain

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2506 green yellow

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602,2506&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume #4.2 level 0.5,0.3

Surface level must be a single value  

> volume #4.2 level 0.5:0.3

Invalid "level" argument: Expected a number  

> volume #4.2 level 0.5 level 0.3

> volume #4.2 level 0.5 level 0.3 meshLighting

Missing "meshLighting" keyword's argument  

> volume #4.2 level 0.5 style mesh level 0.3 style mesh

Repeated keyword argument "style"  

> volume #4.2 level 0.5 style mesh level 0.3

> volume #4.2 level 0.5

> volume #4.2 level 0.5 style mesh

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly)

[Repeated 1 time(s)]

> volume #4.2 level 0.3

> ~show #6.2/a:2506&sidechain

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly)

> volume #4.2 level 0.25

> view matrix camera
> -0.82811,0.53756,-0.1589,128.3,0.3332,0.24409,-0.91072,112.05,-0.45078,-0.80711,-0.38126,121.73

[Repeated 2 time(s)]

> clip list

Using 2 clip planes:  
far offset 8.0092, axis -0.159,-0.911,-0.381, point 139,179.5,148)  
near offset -8.5302, axis 0.159,0.911,0.381, point 137.3,163.6,143.3)  

> ~clip

> clip near -17.283 far 6.1765

> ~clip

> clip near -8.5302 far 8.0092

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume #4.2 level 0.5

> view matrix camera
> -0.80327,0.55343,-0.22016,125.45,0.45245,0.3266,-0.82984,121.86,-0.38735,-0.76617,-0.51276,115.69

> ~clip

> clip near -8.5302 far 8.0092

> ~clip

> clip near -17.283 far 6.1765

> view matrix

view matrix camera
-0.80327,0.55343,-0.22016,125.45,0.45245,0.3266,-0.82984,121.86,-0.38735,-0.76617,-0.51276,115.69  
view matrix models
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 
  

> view matrix camera
> -0.77481,0.61188,-0.1589,128.12,0.35436,0.21221,-0.91072,112.16,-0.52353,-0.76194,-0.38126,121.53

> view matrix camera
> -0.82811,0.53756,-0.1589,128.3,0.3332,0.24409,-0.91072,112.05,-0.45078,-0.80711,-0.38126,121.73

> view matrix

view matrix camera
-0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0  
  

> ~clip

> clip near -8.5302 far 8.0092

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> hide #!4.2 models

> show #!4.2 models

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> style #6.2/a:2552@CM2 stick

Changed 1 atom style  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 2

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 2

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 1

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.8

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.12

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 1.2

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 1.1

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.5

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.7

Changed 1 atom radii  

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> hide #!6.2 models

> hide #!4.2 models

> hide #!1.12 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2506&sidechain

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.1/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2506 green yellow

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2602&sidechain | #6.3/a:2602@C5',O3'

> show #6.3/a:2506&sidechain

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.3/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2506 green yellow

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602,2506&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.4/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2506 green yellow

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.5/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2506 green yellow

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.6/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602,2506&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2506&sidechain

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.7/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602,2506&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.8/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2506 green yellow

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | (#6.8/a:2602,2506&sideonly) | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2506&sidechain

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.9/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2506 green yellow

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602,2506&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2506&sidechain

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.10/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2506 green yellow

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602,2506&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2506&sidechain

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.1/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.1/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2506 green yellow

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2602&sidechain | #6.3/a:2602@C5',O3'

> show #6.3/a:2506&sidechain

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.3/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.3/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2506 green yellow

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602,2506&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.4/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.4/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2506 green yellow

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.5/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.5/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2506 green yellow

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.6/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.6/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602,2506&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2506&sidechain

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.7/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.7/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602,2506&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.8/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.8/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2506 green yellow

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | (#6.8/a:2602,2506&sideonly) | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2506&sidechain

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.9/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.9/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2506 green yellow

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602,2506&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2506&sidechain

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.10/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.10/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2506 green yellow

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602,2506&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume #4.2 level 0.3

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly)

> volume #4.2 level 0.25

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly)

> volume #4.2 level 0.25

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) modelId 999

> volume #4.2 level 0.25

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> volume #4.2 level 0.25

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Tried to create model #999 which already exists  

> close #999

> volume #4.2 level 0.25

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 gray

> close #999

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 gray

> volume #999 level 0.25

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 gray

> volume #999 level 0.25

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> hide #!4.2 models

> show #!4.2 models

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 gray

> volume #999 level 0.25

> show #!4.2 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.4/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.4/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2506 green yellow

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> volume #4.4 level 0.3

> volume #4.4 level 0.4

> volume #4.4 level 0.45

> show #!2.2 models

> hide #!2.2 models

> show #!2.2 models

> hide #!2.2 models

> show #!2.3 models

> hide #!2.3 models

> show #!2.4 models

> hide #!2.4 models

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.6/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.6/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | #6.6/a:2549-2559 | (#6.6/a:2602,2506&sideonly) | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> volume #4.6 level 0.3

> volume #4.6 level 0.35

> volume #4.6 level 0.25

> volume #4.6 level 0.3

> volume #4.6 level 0.25

> volume #4.6 level 0.5

> hide #!6.6 models

> hide #!1.12 models

> hide #!4.6 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 bisque

> volume #999 level 0.25

> show #!4.2 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | #6.2/a:2549-2559 | (#6.2/a:2602,2506&sideonly) | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 bisque

> volume #999 level 0.25

> show #!4.2 models

> color #999 sandy brown

> volume #999 level 0.25

> show #!4.2 models

> color #999 peru

> volume #999 level 0.25

> show #!4.2 models

> color #999 peach puff

> volume #999 level 0.25

> show #!4.2 models

> color #999 navajo white

> volume #999 level 0.25

> show #!4.2 models

> color #999 bisque

> volume #999 level 0.25

> show #!4.2 models

> color #999 tan

> volume #999 level 0.25

> show #!4.2 models

> color #999 cornflower blue

> volume #999 level 0.25

> show #!4.2 models

> color #999 light steel blue

> volume #999 level 0.25

> show #!4.2 models

> color #999 steel blue

> volume #999 level 0.25

> show #!4.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/a:2549-2559 | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Tried to create model #999 which already exists  

> color #999 steel blue

> volume #999 level 0.25

> show #!4.2 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/a:2549-2559 | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 steel blue

> volume #999 level 0.25

> show #!4.2 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.6/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.6/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/a:2549-2559 | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | (#6.6/a:2602&sideonly) newMap true modelId 999

Opened d9_J89_cl6 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 gray

> volume #999 level 0.25

> show #!4.6 models

> color #999 steel blue

> volume #999 level 0.25

> show #!4.6 models

> close #999

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | (#6.6/a:2506,2602&sideonly) newMap true modelId 999

Opened d9_J89_cl6 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 steel blue

> volume #999 level 0.25

> show #!4.6 models

> color #999 steel blue

> volume #999 level 0.30

> show #!4.6 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.7/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.7/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | #6.7/a:2549-2559 | (#6.7/a:2602,2506&sideonly) | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | (#6.7/a:2506,2602&sideonly) newMap true modelId 999

Opened d9_J90_cl7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 steel blue

> volume #999 level 0.30

> show #!4.7 models

> color #999 light steel blue

> volume #999 level 0.30

> show #!4.7 models

> color #999 azure

> volume #999 level 0.30

> show #!4.7 models

> color #999 gainsboro

> volume #999 level 0.30

> show #!4.7 models

> color #999 silver

> volume #999 level 0.30

> show #!4.7 models

> color #999 light cyan

> volume #999 level 0.30

> show #!4.7 models

> color #999 light sky blue

> volume #999 level 0.30

> show #!4.7 models

> color #999 light sky blue

> volume #999 level 0.4

> show #!4.7 models

> color #999 light sky blue

> volume #999 level 0.35

> show #!4.7 models

> color #999 light sky blue

> volume #999 level 0.38

> show #!4.7 models

> color #999 light sky blue

> volume #999 level 0.39

> show #!4.7 models

> close #999

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.7/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.7/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/a:2549-2559 | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | (#6.7/a:2506,2602&sideonly) newMap true modelId 999

Opened d9_J90_cl7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.39

> show #!4.7 models

> close #999

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.8/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.8/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2506 green yellow

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> volume zone #4.7 range 2 nearAtoms (#6.8/a:2602,2506&sideonly) newMap true
> modelId 999

Opened d9_J90_cl7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!4.8 models

> volume #999 level 0.25

> close #999

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.9/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.9/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2506 green yellow

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | #6.9/a:2549-2559 | (#6.9/a:2602,2506&sideonly) | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> hide #6.*/a:2506

> volume zone #4.9 range 2 nearAtoms #6.9/a:2549-2559 | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | (#6.9/a:2602&sideonly) newMap true modelId 999

Opened d9_J92_cl9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!4.9 models

> color #999 light sky blue

> volume #999 level 0.35

> show #!4.9 models

> color #999 light sky blue

> volume #999 level 0.4

> show #!4.9 models

> color #999 light sky blue

> volume #999 level 0.3

> show #!4.9 models

> close #999

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.1/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.1/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2506 green yellow

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/a:2549-2559 | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!4.2 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.2.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!4.3#!6.3 models

> show #6.3/a:2550-2558

> show #6.3/a:2580-2585,3019

> show #6.3/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.3/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.3/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.3/a:2549-2559 cadet blue

> color #6.3/a:2602 #8770B5

> color #6.3/a:2506 green yellow

> color #6.3/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.3 level 0.5

> volume zone #4.3 range 2 nearAtoms #6.3/v:2-5 | #6.3/Y:72-76 | #6.3/a:2549-2559 | (#6.3/a:2602,2506&sideonly) | #6.3/a:2580-2585 | #6.3/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.3.png width 800
> height 600 supersample 4

> hide #!1.12#!4.3#!6.3 models

> show #!1.12#!4.4#!6.4 models

> show #6.4/a:2550-2558

> show #6.4/a:2602&sidechain | #6.4/a:2602@C5',O3'

> show #6.4/a:2506&sidechain

> show #6.4/a:2580-2585,3019

> show #6.4/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.4/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.4/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.4/a:2549-2559 cadet blue

> color #6.4/a:2602 #8770B5

> color #6.4/a:2506 green yellow

> color #6.4/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.4 level 0.5

> volume zone #4.4 range 2 nearAtoms #6.4/v:2-5 | #6.4/Y:72-76 | #6.4/a:2549-2559 | (#6.4/a:2602,2506&sideonly) | #6.4/a:2580-2585 | #6.4/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!4.4#!6.4 models

> show #!1.12#!4.5#!6.5 models

> show #6.5/a:2550-2558

> show #6.5/a:2602&sidechain | #6.5/a:2602@C5',O3'

> show #6.5/a:2506&sidechain

> show #6.5/a:2580-2585,3019

> show #6.5/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.5/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.5/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.5/a:2549-2559 cadet blue

> color #6.5/a:2602 #8770B5

> color #6.5/a:2506 green yellow

> color #6.5/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.5 level 0.5

> volume zone #4.5 range 2 nearAtoms #6.5/v:2-5 | #6.5/Y:72-76 | #6.5/a:2549-2559 | (#6.5/a:2602,2506&sideonly) | #6.5/a:2580-2585 | #6.5/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!4.5#!6.5 models

> show #!1.12#!4.6#!6.6 models

> show #6.6/a:2550-2558

> show #6.6/a:2602&sidechain | #6.6/a:2602@C5',O3'

> show #6.6/a:2506&sidechain

> show #6.6/a:2580-2585,3019

> show #6.6/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.6/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.6/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.6/a:2549-2559 cadet blue

> color #6.6/a:2602 #8770B5

> color #6.6/a:2506 green yellow

> color #6.6/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.6 level 0.5

> volume zone #4.6 range 2 nearAtoms #6.6/a:2549-2559 | #6.6/a:2580-2585 | #6.6/a:3019 | #1.12/a:1672

> volume zone #4.6 range 2 nearAtoms #6.6/v:2-5 | #6.6/Y:72-76 | (#6.6/a:2506,2602&sideonly) newMap true modelId 999

Opened d9_J89_cl6 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!4.6 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.6.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.6#!6.6 models

> show #!1.12#!4.7#!6.7 models

> show #6.7/a:2550-2558

> show #6.7/a:2602&sidechain | #6.7/a:2602@C5',O3'

> show #6.7/a:2580-2585,3019

> show #6.7/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.7/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.7/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.7/a:2549-2559 cadet blue

> color #6.7/a:2602 #8770B5

> color #6.7/a:2506 green yellow

> color #6.7/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.7 level 0.5

> volume zone #4.7 range 2 nearAtoms #6.7/a:2549-2559 | #6.7/a:2580-2585 | #6.7/a:3019 | #1.12/a:1672

> volume zone #4.7 range 2 nearAtoms #6.7/v:2-5 | #6.7/Y:72-76 | (#6.7/a:2506,2602&sideonly) newMap true modelId 999

Opened d9_J90_cl7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.39

> show #!4.7 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.7.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.7#!6.7 models

> show #!1.12#!4.8#!6.8 models

> show #6.8/a:2550-2558

> show #6.8/a:2602&sidechain | #6.8/a:2602@C5',O3'

> show #6.8/a:2506&sidechain

> show #6.8/a:2580-2585,3019

> show #6.8/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.8/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.8/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.8/a:2549-2559 cadet blue

> color #6.8/a:2602 #8770B5

> color #6.8/a:2506 green yellow

> color #6.8/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.8 level 0.5

> volume zone #4.8 range 2 nearAtoms #6.8/v:2-5 | #6.8/Y:72-76 | #6.8/a:2549-2559 | #6.8/a:2580-2585 | #6.8/a:3019 | #1.12/a:1672

> volume zone #4.7 range 2 nearAtoms (#6.8/a:2602,2506&sideonly) newMap true
> modelId 999

Opened d9_J90_cl7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!4.8 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.8.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.8#!6.8 models

> show #!1.12#!4.9#!6.9 models

> show #6.9/a:2550-2558

> show #6.9/a:2602&sidechain | #6.9/a:2602@C5',O3'

> show #6.9/a:2580-2585,3019

> show #6.9/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.9/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.9/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.9/a:2549-2559 cadet blue

> color #6.9/a:2602 #8770B5

> color #6.9/a:2506 green yellow

> color #6.9/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.9 level 0.5

> volume zone #4.9 range 2 nearAtoms #6.9/a:2549-2559 | #6.9/a:2580-2585 | #6.9/a:3019 | #1.12/a:1672

> volume zone #4.9 range 2 nearAtoms #6.9/v:2-5 | #6.9/Y:72-76 | (#6.9/a:2602&sideonly) newMap true modelId 999

Opened d9_J92_cl9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!4.9 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.9.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!4.9#!6.9 models

> show #!1.12#!4.10#!6.10 models

> show #6.10/a:2550-2558

> show #6.10/a:2602&sidechain | #6.10/a:2602@C5',O3'

> show #6.10/a:2506&sidechain

> show #6.10/a:2580-2585,3019

> show #6.10/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.10/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.10/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.10/a:2549-2559 cadet blue

> color #6.10/a:2602 #8770B5

> color #6.10/a:2506 green yellow

> color #6.10/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.10 level 0.5

> volume zone #4.10 range 2 nearAtoms #6.10/v:2-5 | #6.10/Y:72-76 | #6.10/a:2549-2559 | (#6.10/a:2602,2506&sideonly) | #6.10/a:2580-2585 | #6.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta9_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!4.10#!6.10 models

> windowsize 800 600

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #14.1/a:2552@CM2 sphere

Changed 0 atom styles  

> size #14.1/a:2552@CM2 atomRadius 0.6

Changed 0 atom radii  

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> hide #!1.12#!12.1#!14.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/a:2549-2559 | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!4.2 models

> windowsize 400 300

> windowsize 600 450

> windowsize 800 450

> windowsize 800 600

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> hide #14.*

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> hide #!1.12#!12.1#!14.1 models

> show #!1.12#!4.2#!6.2 models

> show #6.2/a:2550-2558

> show #6.2/a:2602&sidechain | #6.2/a:2602@C5',O3'

> show #6.2/a:2580-2585,3019

> show #6.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.2/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.2/a:2549-2559 cadet blue

> color #6.2/a:2602 #8770B5

> color #6.2/a:2506 green yellow

> color #6.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.2 level 0.5

> volume zone #4.2 range 2 nearAtoms #6.2/a:2549-2559 | #6.2/a:2580-2585 | #6.2/a:3019 | #1.12/a:1672

> volume zone #4.2 range 2 nearAtoms #6.2/v:2-5 | #6.2/Y:72-76 | (#6.2/a:2602&sideonly) newMap true modelId 999

Opened d9_J85_cl2 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!4.2 models

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> size #6.2/a:2552@CM2 atomRadius 0.9

Changed 1 atom radii  

> size #6.2/a:2552@CM2 atomRadius 0.8

Changed 1 atom radii  

> close #999

> hide #!1.12#!4.2#!6.2 models

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> clip list

Using 2 clip planes:  
near offset -12.809, axis 0.159,0.911,0.381, point 140.9,164.2,141.5)  
far offset 3.7309, axis -0.159,-0.911,-0.381, point 143.5,179.3,147.8)  

> clip list

Using 2 clip planes:  
near offset -15.724, axis 0.159,0.911,0.381, point 140.4,161.6,140.4)  
far offset 3.7309, axis -0.159,-0.911,-0.381, point 143.5,179.3,147.8)  

> ~clip

> clip near -12.809 far 3.7309

> clip list

Using 2 clip planes:  
near offset -15.225, axis 0.159,0.911,0.381, point 144.3,160.6,142.4)  
far offset 5.1725, axis -0.159,-0.911,-0.381, point 147.6,179.2,150.2)  

> ~clip

> clip near -15.724 far 5.1725

> volume #12.1 level 0.4

> volume #12.1 level 0.3

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> ~clip

> clip near -12.809 far 3.7309

> ~clip

> clip near -15.724 far 5.1725

> volume #12.1 level 0.3

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/a:2553 newMap true modelId 999

Opened d10_J54_c1 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.1 models

> color #999 light sky blue

> volume #999 level 0.35

> show #!12.1 models

> close #999

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -15.724 far 5.1725

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> volume zone #12.1 range 2 nearAtoms #14.1/a:2553&sidechain newMap true
> modelId 999

Opened d10_J54_c1 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.1 models

> close #999

> hide #!1.12#!12.1#!14.1 models

> show #!1.12#!12.2#!14.2 models

> show #14.2/a:2550-2558

> show #14.2/a:2602&sidechain | #14.2/a:2602@C5',O3'

> show #14.2/a:2506&sidechain

> show #14.2/a:2580-2585,3019

> show #14.2/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.2/a:2549-2559 cadet blue

> color #14.2/a:2602 #8770B5

> color #14.2/a:2506 green yellow

> color #14.2/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.2 level 0.5

> volume zone #12.2 range 2 nearAtoms #14.2/v:2-5 | #14.2/Y:72-76 | #14.2/a:2549-2559 | (#14.2/a:2602,2506&sideonly) | #14.2/a:2580-2585 | #14.2/a:3019 | #1.22/a:1672

> volume #12.2 level 0.4

> volume zone #12.2 range 2 nearAtoms #14.2/v:2-5 | #14.2/Y:72-76 | #14.2/a:2549-2559 | (#14.2/a:2602,2506&sidechain) | #14.2/a:2580-2585 | #14.2/a:3019 | #1.22/a:1672

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -15.724 far 5.1725

> hide #!1.12#!12.2#!14.2 models

> show #!1.12#!4.1#!6.1 models

> show #6.1/a:2550-2558

> show #6.1/a:2602&sidechain | #6.1/a:2602@C5',O3'

> show #6.1/a:2580-2585,3019

> show #6.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> style #6.1/a:2552@CM2 sphere

Changed 1 atom style  

> size #6.1/a:2552@CM2 atomRadius 0.6

Changed 1 atom radii  

> color #6.1/a:2549-2559 cadet blue

> color #6.1/a:2602 #8770B5

> color #6.1/a:2506 green yellow

> color #6.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #4.1 level 0.5

> volume zone #4.1 range 2 nearAtoms #6.1/v:2-5 | #6.1/Y:72-76 | #6.1/a:2549-2559 | (#6.1/a:2602,2506&sideonly) | #6.1/a:2580-2585 | #6.1/a:3019 | #1.12/a:1672

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -8.5302 far 8.0092

> view name A-loop-d9

> view A-loop-d9

> hide #!1.12#!4.1#!6.1 models

> show #!1.12#!12.1#!14.1 models

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1670-1674

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #8770B5

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> view matrix camera
> -0.82811,0.53756,-0.1589,129.71,0.3332,0.24409,-0.91072,115.62,-0.45078,-0.80711,-0.38126,123.29

> ~clip

> clip near -15.724 far 5.1725

> view A-loop-d10

Expected an objects specifier or a view name or a keyword  

> view name A-loop-d10

> save /Users/dalar193/wd/deltaRibosomes/figure_A-loop_new.cxs

——— End of log from Thu Jul 3 21:26:40 2025 ———

opened ChimeraX session  

> hide #!14.1 models

> hide #!12.1 models

> hide #!1.12 models

> view A-loop-d10

> show #!1.12#!12.9#!14.9 models

> show #14.9/a:2550-2558

> show #14.9/a:2602&sidechain | #14.9/a:2602@C5',O3'

> show #14.9/a:2506&sidechain

> show #14.9/a:2580-2585,3019

> show #14.9/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.9/a:2549-2559 cadet blue

> color #14.9/a:2602 #0FAB7E

> color #14.9/a:2506 green yellow

> color #14.9/a:2580-2585,3019 crimson

> color #14.9/Y maroon

> color #14.9/v orange

> color #1.12 gray

> volume #12.9 level 0.5

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672

> volume zone #12.9 range 3.5 nearAtoms #14.9/v:2-5 | #14.9/Y:72-76 | (#14.9/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J62_c9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!12.9 models

> show #14.9/W:36

> close #25.9

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb
> id 14.9 name d10_J62_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J62_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> style #!1.12#!14.9#!14.9.3 stick

Changed 157870 atom styles  

> close #14.9

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb
> id 14.9 name d10_J62_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-5.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J62_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> style #!1.12#!14.9 stick

Changed 147574 atom styles  

> style #!1.12#!14.9 stick

Changed 147574 atom styles  

> open /Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
> PTC/dEc9-J248-coot-3-self-restr.pdb id 25.9 name dE_J248_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/deltaE/CS-
PTC/dEc9-J248-coot-3-self-restr.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for dE_J248_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> style #!1.12#!14.9#!25.9 stick

Changed 157967 atom styles  

> hide #!25.9 models

> hide #!12.9 models

> hide #!14.9 models

> close #999

> hide #!1.12 models

> hide #14.9

> hide #25.9

> view A-loop-d10

> show #!1.12#!12.9#!14.9 models

> show #14.9/a:2550-2558

> show #14.9/a:2602&sidechain | #14.9/a:2602@C5',O3'

> show #14.9/a:2506&sidechain

> show #14.9/a:2580-2585,3019

> show #14.9/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.9/a:2549-2559 cadet blue

> color #14.9/a:2602 #0FAB7E

> color #14.9/a:2506 green yellow

> color #14.9/a:2580-2585,3019 crimson

> color #14.9/Y maroon

> color #14.9/v orange

> color #1.12 gray

> volume #12.9 level 0.5

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672

> volume zone #12.9 range 3.5 nearAtoms #14.9/v:2-5 | #14.9/Y:72-76 | (#14.9/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J62_c9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!12.9 models

> show #14.9/W:36

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672 | #14.9/W:36

> color #14.9/W cadet blue

> close #14.1-10

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-6-A-loop.pdb
> id 14.10 name d10_J53_c0

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J53-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J53_c0 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-6-A-loop.pdb
> id 14.1 name d10_J54_c1

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J54-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J54_c1 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-6-A-loop.pdb
> id 14.2 name d10_J55_c2

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J55-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J55_c2 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-6-A-loop.pdb
> id 14.3 name d10_J56_c3

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J56-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J56_c3 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-6-A-loop.pdb
> id 14.4 name d10_J57_c4

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J57-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J57_c4 #7  
---  
Chain | Description  
3 | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-6-A-loop.pdb
> id 14.5 name d10_J58_c5

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J58-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J58_c5 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-6-A-loop.pdb
> id 14.6 name d10_J59_c6

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J59-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J59_c6 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-6-A-loop.pdb
> id 14.7 name d10_J60_c7

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J60-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J60_c7 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-6-A-loop.pdb
> id 14.8 name d10_J61_c8

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J61-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J61_c8 #7  
---  
Chain | Description  
3 | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-6-A-loop.pdb
> id 14.9 name d10_J62_c9

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/modelling/delta10/CS-J53-J62/d10J62-coot-6-A-loop.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 SER B 5 GLY B 13 1 9  
Start residue of secondary structure not found: HELIX 2 2 GLN B 19 ASN B 24 1
6  
Start residue of secondary structure not found: HELIX 3 3 PRO B 25 PHE B 32 1
8  
Start residue of secondary structure not found: HELIX 4 4 ASN B 42 LYS B 64 1
23  
Start residue of secondary structure not found: HELIX 5 5 ALA B 76 ASP B 88 1
13  
320 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 4 50 4 GLY l 99 LEU l 102
-1 N LEU l 102 O LEU l 33  
Start residue of secondary structure not found: SHEET 1 51 2 SER l 30 VAL l 36
0  
End residue of secondary structure not found: SHEET 2 51 2 LYS l 127 LYS l 133
-1 N LYS l 133 O SER l 30  
Start residue of secondary structure not found: SHEET 1 52 3 ILE m 33 THR m 37
0  
Start residue of secondary structure not found: SHEET 2 52 3 ASN m 107 LEU m
115 -1 N ILE m 113 O ILE m 34  
Start residue of secondary structure not found: SHEET 3 52 3 THR m 95 ARG m
103 -1 N CYS m 100 O MET m 110  
Start residue of secondary structure not found: SHEET 1 53 4 VAL n 49 THR n 53
0  
Start residue of secondary structure not found: SHEET 2 53 4 ILE n 35 ALA n 41
-1 N VAL n 39 O VAL n 49  
55 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
Cannot find LINK/SSBOND residue ZN (101 )  
  
Chain information for d10_J62_c9 #7  
---  
Chain | Description  
3 | No description available  
Y | No description available  
Z | No description available  
a | No description available  
b | No description available  
c | No description available  
e | No description available  
l | No description available  
v | No description available  
  

> rename #14 d10-PTC-models

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> style #!1.12#!14.1-10 stick

Changed 235637 atom styles  

> hide #!14.10 models

> hide #!14.9 models

> hide #!14.8 models

> hide #!14.7 models

> hide #!14.6 models

> hide #!14.5 models

> hide #!14.4 models

> hide #!14.3 models

> hide #!14.2 models

> hide #!14.1 models

> hide #!12.9 models

> close #999

> hide #!1.12 models

> view A-loop-d10

> show #!1.12#!12.1#!14.1 models

> hide #14.1

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #!14.2 models

> hide #14.2

> show #14.2/a:2553-2554:2552@O3

> color #14.2/a:2552-2553 cadet blue

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.1/a:2549-2559 cadet blue

> hide #14.1/a:2554

> show #14.1/a:2554@O3'

> hide #14.1/a:2553

> show #14.1/a:2553 & sidechain

> color #14.1/a:2553 turquoise

> color #14.1/a:2602 #0FAB7E

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #14.1/Y maroon

> color #14.1/v orange

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672 | #14.2/a:2553-2554

> volume zone #12.1 range 2 nearAtoms #14.1/a:2553&sidechain newMap true
> modelId 999

Opened d10_J54_c1 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.1 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.1.png width 800
> height 600 supersample 4

> close #999

> hide #!14.2 models

> hide #!1.12#!12.1#!14.1 models

> view A-loop-d10

> show #!1.12#!12.2#!14.2 models

> hide #14.2

> show #14.2/a:2550-2558

> show #14.2/a:2602&sidechain | #14.2/a:2602@C5',O3'

> show #14.2/a:2506&sidechain

> show #14.2/a:2580-2585,3019

> show #14.2/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.2/a:2549-2559 cadet blue

> color #14.2/a:2602 #0FAB7E

> color #14.2/a:2506 green yellow

> color #14.2/a:2580-2585,3019 crimson

> color #14.2/Y maroon

> color #14.2/v orange

> color #1.12 gray

> volume #12.2 level 0.5

> volume zone #12.2 range 2 nearAtoms #14.2/v:2-5 | #14.2/Y:72-76 | #14.2/a:2549-2559 | (#14.2/a:2602,2506&sidechain) | #14.2/a:2580-2585 | #14.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!12.2#!14.2 models

> view A-loop-d10

> show #!1.12#!12.3#!14.3 models

> hide #14.3

> show #14.3/a:2550-2558

> show #14.3/a:2602&sidechain | #14.3/a:2602@C5',O3'

> show #14.3/a:2506&sidechain

> show #14.3/a:2580-2585,3019

> show #14.3/Y:72-76/v:2-6

> show #!14.2 models

> hide #14.2

> show #14.2/a:2553-2554 & sidechain

> color #14.2/a:2553-2554 turquoise

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.3/a:2549-2559 cadet blue

> color #14.3/a:2602 #0FAB7E

> color #14.3/a:2506 green yellow

> color #14.3/a:2580-2585,3019 crimson

> color #14.3/Y maroon

> color #14.3/v orange

> color #1.12 gray

> volume #12.3 level 0.5

> volume zone #12.3 range 2 nearAtoms #14.3/a:2549-2559 | #14.3/a:2580-2585 | #14.3/a:3019 | #1.12/a:1672 | #14.2/a:2553-2554

> volume zone #12.3 range 3.5 nearAtoms #14.3/v:2-5 | #14.3/Y:72-76 | (#14.3/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J56_c3 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.3 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.3.png width 800
> height 600 supersample 4

> close #999

> hide #!14.2 models

> hide #!1.12#!12.3#!14.3 models

> view A-loop-d10

> show #!1.12#!12.4#!14.4 models

> hide #14.4

> show #14.4/a:2550-2558

> show #14.4/a:2602&sidechain | #14.4/a:2602@C5',O3'

> show #14.4/a:2506&sidechain

> show #14.4/a:2580-2585,3019

> show #14.4/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.4/a:2549-2559 cadet blue

> color #14.4/a:2602 #0FAB7E

> color #14.4/a:2506 green yellow

> color #14.4/a:2580-2585,3019 crimson

> color #14.4/Y maroon

> color #14.4/v orange

> color #1.12 gray

> volume #12.4 level 0.5

> volume zone #12.4 range 2 nearAtoms #14.4/v:2-5 | #14.4/Y:72-76 | #14.4/a:2549-2559 | (#14.4/a:2602,2506&sidechain) | #14.4/a:2580-2585 | #14.4/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!12.4#!14.4 models

> view A-loop-d10

> show #!1.12#!12.5#!14.5 models

> hide #14.5

> show #14.5/a:2550-2558

> show #14.5/a:2602&sidechain | #14.5/a:2602@C5',O3'

> show #14.5/a:2506&sidechain

> show #14.5/a:2580-2585,3019

> show #14.5/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.5/a:2549-2559 cadet blue

> color #14.5/a:2602 #0FAB7E

> color #14.5/a:2506 green yellow

> color #14.5/a:2580-2585,3019 crimson

> color #14.5/Y maroon

> color #14.5/v orange

> color #1.12 gray

> volume #12.5 level 0.5

> volume zone #12.5 range 2 nearAtoms #14.5/v:2-5 | #14.5/Y:72-76 | #14.5/a:2549-2559 | (#14.5/a:2602,2506&sidechain) | #14.5/a:2580-2585 | #14.5/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!12.5#!14.5 models

> view A-loop-d10

> show #!1.12#!12.6#!14.6 models

> hide #14.6

> show #14.6/a:2550-2558

> show #14.6/a:2602&sidechain | #14.6/a:2602@C5',O3'

> show #14.6/a:2506&sidechain

> show #14.6/a:2580-2585,3019

> show #14.6/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.6/a:2549-2559 cadet blue

> color #14.6/a:2602 #0FAB7E

> color #14.6/a:2506 green yellow

> color #14.6/a:2580-2585,3019 crimson

> color #14.6/Y maroon

> color #14.6/v orange

> color #1.12 gray

> volume #12.6 level 0.5

> volume zone #12.6 range 2 nearAtoms #14.6/a:2549-2559 | #14.6/a:2580-2585 | #14.6/a:3019 | #1.12/a:1672

> volume zone #12.6 range 3.5 nearAtoms #14.6/v:2-5 | #14.6/Y:72-76 | (#14.6/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J59_c6 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.4

> show #!12.6 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.6.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.6#!14.6 models

> view A-loop-d10

> show #!1.12#!12.7#!14.7 models

> hide #14.7

> show #14.7/a:2550-2558

> show #14.7/a:2602&sidechain | #14.7/a:2602@C5',O3'

> show #14.7/a:2506&sidechain

> show #14.7/a:2580-2585,3019

> show #14.7/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.7/a:2549-2559 cadet blue

> color #14.7/a:2602 #0FAB7E

> color #14.7/a:2506 green yellow

> color #14.7/a:2580-2585,3019 crimson

> color #14.7/Y maroon

> color #14.7/v orange

> color #1.12 gray

> volume #12.7 level 0.5

> volume zone #12.7 range 2 nearAtoms #14.7/a:2549-2559 | #14.7/a:2580-2585 | #14.7/a:3019 | #1.12/a:1672

> volume zone #12.7 range 3.5 nearAtoms #14.7/v:2-5 | #14.7/Y:72-76 | (#14.7/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J60_c7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.40

> show #!12.7 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.7.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.7#!14.7 models

> view A-loop-d10

> show #!1.12#!12.8#!14.8 models

> hide #14.8

> show #14.8/a:2550-2558

> show #14.8/a:2602&sidechain | #14.8/a:2602@C5',O3'

> show #14.8/a:2506&sidechain

> show #14.8/a:2580-2585,3019

> show #14.8/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.8/a:2549-2559 cadet blue

> color #14.8/a:2602 #0FAB7E

> color #14.8/a:2506 green yellow

> color #14.8/a:2580-2585,3019 crimson

> color #14.8/Y maroon

> color #14.8/v orange

> color #1.12 gray

> volume #12.8 level 0.5

> volume zone #12.8 range 2 nearAtoms #14.8/v:2-5 | #14.8/Y:72-76 | #14.8/a:2549-2559 | (#14.8/a:2602,2506&sidechain) | #14.8/a:2580-2585 | #14.8/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!12.8#!14.8 models

> view A-loop-d10

> show #!1.12#!12.9#!14.9 models

> hide #14.9

> show #14.9/a:2550-2558

> show #14.9/a:2602&sidechain | #14.9/a:2602@C5',O3'

> show #14.9/a:2506&sidechain

> show #14.9/a:2580-2585,3019

> show #14.9/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.9/a:2549-2559 cadet blue

> color #14.9/W cadet blue

> color #14.9/a:2602 #0FAB7E

> color #14.9/a:2506 green yellow

> color #14.9/a:2580-2585,3019 crimson

> color #14.9/Y maroon

> color #14.9/v orange

> color #1.12 gray

> volume #12.9 level 0.5

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672 | #14.9/W:36

> volume zone #12.9 range 3.5 nearAtoms #14.9/v:2-5 | #14.9/Y:72-76 | (#14.9/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J62_c9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!12.9 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.9.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.9#!14.9 models

> view A-loop-d10

> show #!1.12#!12.10#!14.10 models

> hide #14.10

> show #14.10/a:2550-2558

> show #14.10/a:2602&sidechain | #14.10/a:2602@C5',O3'

> show #14.10/a:2506&sidechain

> show #14.10/a:2580-2585,3019

> show #14.10/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.10/a:2549-2559 cadet blue

> color #14.10/a:2602 #0FAB7E

> color #14.10/a:2506 green yellow

> color #14.10/a:2580-2585,3019 crimson

> color #14.10/Y maroon

> color #14.10/v orange

> color #1.12 gray

> volume #12.10 level 0.5

> volume zone #12.10 range 2 nearAtoms #14.10/v:2-5 | #14.10/Y:72-76 | #14.10/a:2549-2559 | (#14.10/a:2602,2506&sidechain) | #14.10/a:2580-2585 | #14.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!12.10#!14.10 models

> show #!1.12 models

> hide #1.12

> view A-loop-d10

> show #!1.12#!12.8#!14.8 models

> hide #14.8

> show #14.8/a:2550-2558

> show #14.8/a:2602&sidechain | #14.8/a:2602@C5',O3'

> show #14.8/a:2506&sidechain

> show #14.8/a:2580-2585,3019

> show #14.8/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.8/a:2549-2559 cadet blue

> color #14.8/a:2602 #0FAB7E

> color #14.8/a:2506 green yellow

> color #14.8/a:2580-2585,3019 crimson

> color #14.8/Y maroon

> color #14.8/v orange

> color #1.12 gray

> volume #12.8 level 0.5

> volume zone #12.8 range 2 nearAtoms #14.8/v:2-5 | #14.8/Y:72-76 | #14.8/a:2549-2559 | (#14.8/a:2602,2506&sidechain) | #14.8/a:2580-2585 | #14.8/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!12.8#!14.8 models

> view A-loop-d10

> show #!1.12#!12.1#!14.1 models

> hide #14.1

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #!14.2 models

> hide #14.2

> show #14.2/a:2553-2554:2552@O3

> color #14.2/a:2552-2553 cadet blue

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.1/a:2549-2559 cadet blue

> hide #14.1/a:2554

> show #14.1/a:2554@O3'

> hide #14.1/a:2553

> show #14.1/a:2553 & sidechain

> color #14.1/a:2553 turquoise

> color #14.1/a:2602 #0FAB7E

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #14.1/Y maroon

> color #14.1/v orange

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sideonly) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672 | #14.2/a:2553-2554

> volume zone #12.1 range 2 nearAtoms #14.1/a:2553&sidechain newMap true
> modelId 999

Opened d10_J54_c1 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.1 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.1.png width 800
> height 600 supersample 4

> close #999

> hide #!14.2 models

> hide #!1.12#!12.1#!14.1 models

> view A-loop-d10

> show #!1.12#!12.2#!14.2 models

> hide #14.2

> show #14.2/a:2550-2558

> show #14.2/a:2602&sidechain | #14.2/a:2602@C5',O3'

> show #14.2/a:2506&sidechain

> show #14.2/a:2580-2585,3019

> show #14.2/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.2/a:2549-2559 cadet blue

> color #14.2/a:2602 #0FAB7E

> color #14.2/a:2506 green yellow

> color #14.2/a:2580-2585,3019 crimson

> color #14.2/Y maroon

> color #14.2/v orange

> color #1.12 gray

> volume #12.2 level 0.5

> volume zone #12.2 range 2 nearAtoms #14.2/v:2-5 | #14.2/Y:72-76 | #14.2/a:2549-2559 | (#14.2/a:2602,2506&sidechain) | #14.2/a:2580-2585 | #14.2/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.2.png width 800
> height 600 supersample 4

> hide #!1.12#!12.2#!14.2 models

> view A-loop-d10

> show #!1.12#!12.3#!14.3 models

> hide #14.3

> show #14.3/a:2550-2558

> show #14.3/a:2602&sidechain | #14.3/a:2602@C5',O3'

> show #14.3/a:2506&sidechain

> show #14.3/a:2580-2585,3019

> show #14.3/Y:72-76/v:2-6

> show #!14.2 models

> hide #14.2

> show #14.2/a:2553-2554 & sidechain

> color #14.2/a:2553-2554 turquoise

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.3/a:2549-2559 cadet blue

> color #14.3/a:2602 #0FAB7E

> color #14.3/a:2506 green yellow

> color #14.3/a:2580-2585,3019 crimson

> color #14.3/Y maroon

> color #14.3/v orange

> color #1.12 gray

> volume #12.3 level 0.5

> volume zone #12.3 range 2 nearAtoms #14.3/a:2549-2559 | #14.3/a:2580-2585 | #14.3/a:3019 | #1.12/a:1672 | #14.2/a:2553-2554

> volume zone #12.3 range 3.5 nearAtoms #14.3/v:2-5 | #14.3/Y:72-76 | (#14.3/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J56_c3 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.3 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.3.png width 800
> height 600 supersample 4

> close #999

> hide #!14.2 models

> hide #!1.12#!12.3#!14.3 models

> view A-loop-d10

> show #!1.12#!12.4#!14.4 models

> hide #14.4

> show #14.4/a:2550-2558

> show #14.4/a:2602&sidechain | #14.4/a:2602@C5',O3'

> show #14.4/a:2506&sidechain

> show #14.4/a:2580-2585,3019

> show #14.4/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.4/a:2549-2559 cadet blue

> color #14.4/a:2602 #0FAB7E

> color #14.4/a:2506 green yellow

> color #14.4/a:2580-2585,3019 crimson

> color #14.4/Y maroon

> color #14.4/v orange

> color #1.12 gray

> volume #12.4 level 0.5

> volume zone #12.4 range 2 nearAtoms #14.4/v:2-5 | #14.4/Y:72-76 | #14.4/a:2549-2559 | (#14.4/a:2602,2506&sidechain) | #14.4/a:2580-2585 | #14.4/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.4.png width 800
> height 600 supersample 4

> hide #!1.12#!12.4#!14.4 models

> view A-loop-d10

> show #!1.12#!12.5#!14.5 models

> hide #14.5

> show #14.5/a:2550-2558

> show #14.5/a:2602&sidechain | #14.5/a:2602@C5',O3'

> show #14.5/a:2506&sidechain

> show #14.5/a:2580-2585,3019

> show #14.5/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.5/a:2549-2559 cadet blue

> color #14.5/a:2602 #0FAB7E

> color #14.5/a:2506 green yellow

> color #14.5/a:2580-2585,3019 crimson

> color #14.5/Y maroon

> color #14.5/v orange

> color #1.12 gray

> volume #12.5 level 0.5

> volume zone #12.5 range 2 nearAtoms #14.5/v:2-5 | #14.5/Y:72-76 | #14.5/a:2549-2559 | (#14.5/a:2602,2506&sidechain) | #14.5/a:2580-2585 | #14.5/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.5.png width 800
> height 600 supersample 4

> hide #!1.12#!12.5#!14.5 models

> view A-loop-d10

> show #!1.12#!12.6#!14.6 models

> hide #14.6

> show #14.6/a:2550-2558

> show #14.6/a:2602&sidechain | #14.6/a:2602@C5',O3'

> show #14.6/a:2506&sidechain

> show #14.6/a:2580-2585,3019

> show #14.6/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.6/a:2549-2559 cadet blue

> color #14.6/a:2602 #0FAB7E

> color #14.6/a:2506 green yellow

> color #14.6/a:2580-2585,3019 crimson

> color #14.6/Y maroon

> color #14.6/v orange

> color #1.12 gray

> volume #12.6 level 0.5

> volume zone #12.6 range 2 nearAtoms #14.6/a:2549-2559 | #14.6/a:2580-2585 | #14.6/a:3019 | #1.12/a:1672

> volume zone #12.6 range 3.5 nearAtoms #14.6/v:2-5 | #14.6/Y:72-76 | (#14.6/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J59_c6 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.4

> show #!12.6 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.6.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.6#!14.6 models

> view A-loop-d10

> show #!1.12#!12.7#!14.7 models

> hide #14.7

> show #14.7/a:2550-2558

> show #14.7/a:2602&sidechain | #14.7/a:2602@C5',O3'

> show #14.7/a:2506&sidechain

> show #14.7/a:2580-2585,3019

> show #14.7/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.7/a:2549-2559 cadet blue

> color #14.7/a:2602 #0FAB7E

> color #14.7/a:2506 green yellow

> color #14.7/a:2580-2585,3019 crimson

> color #14.7/Y maroon

> color #14.7/v orange

> color #1.12 gray

> volume #12.7 level 0.5

> volume zone #12.7 range 2 nearAtoms #14.7/a:2549-2559 | #14.7/a:2580-2585 | #14.7/a:3019 | #1.12/a:1672

> volume zone #12.7 range 3.5 nearAtoms #14.7/v:2-5 | #14.7/Y:72-76 | (#14.7/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J60_c7 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.40

> show #!12.7 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.7.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.7#!14.7 models

> view A-loop-d10

> show #!1.12#!12.8#!14.8 models

> hide #14.8

> show #14.8/a:2550-2558

> show #14.8/a:2602&sidechain | #14.8/a:2602@C5',O3'

> show #14.8/a:2506&sidechain

> show #14.8/a:2580-2585,3019

> show #14.8/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.8/a:2549-2559 cadet blue

> color #14.8/a:2602 #0FAB7E

> color #14.8/a:2506 green yellow

> color #14.8/a:2580-2585,3019 crimson

> color #14.8/Y maroon

> color #14.8/v orange

> color #1.12 gray

> volume #12.8 level 0.5

> volume zone #12.8 range 2 nearAtoms #14.8/v:2-5 | #14.8/Y:72-76 | #14.8/a:2549-2559 | (#14.8/a:2602,2506&sidechain) | #14.8/a:2580-2585 | #14.8/a:3019 | #1.12/a:1672 | #14.3/a:2580-2585

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.8.png width 800
> height 600 supersample 4

> hide #!1.12#!12.8#!14.8 models

> view A-loop-d10

> show #!1.12#!12.9#!14.9 models

> hide #14.9

> show #14.9/a:2550-2558

> show #14.9/a:2602&sidechain | #14.9/a:2602@C5',O3'

> show #14.9/a:2506&sidechain

> show #14.9/a:2580-2585,3019

> show #14.9/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.9/a:2549-2559 cadet blue

> color #14.9/W cadet blue

> color #14.9/a:2602 #0FAB7E

> color #14.9/a:2506 green yellow

> color #14.9/a:2580-2585,3019 crimson

> color #14.9/Y maroon

> color #14.9/v orange

> color #1.12 gray

> volume #12.9 level 0.5

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672 | #14.9/W:36

> volume zone #12.9 range 3.5 nearAtoms #14.9/v:2-5 | #14.9/Y:72-76 | (#14.9/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J62_c9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!12.9 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.9.png width 800
> height 600 supersample 4

> close #999

> hide #!1.12#!12.9#!14.9 models

> view A-loop-d10

> show #!1.12#!12.10#!14.10 models

> hide #14.10

> show #14.10/a:2550-2558

> show #14.10/a:2602&sidechain | #14.10/a:2602@C5',O3'

> show #14.10/a:2506&sidechain

> show #14.10/a:2580-2585,3019

> show #14.10/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.10/a:2549-2559 cadet blue

> color #14.10/a:2602 #0FAB7E

> color #14.10/a:2506 green yellow

> color #14.10/a:2580-2585,3019 crimson

> color #14.10/Y maroon

> color #14.10/v orange

> color #1.12 gray

> volume #12.10 level 0.5

> volume zone #12.10 range 2 nearAtoms #14.10/v:2-5 | #14.10/Y:72-76 | #14.10/a:2549-2559 | (#14.10/a:2602,2506&sidechain) | #14.10/a:2580-2585 | #14.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!12.10#!14.10 models

> view A-loop-dE

Expected an objects specifier or a view name or a keyword  

> show #!1.12#!23.1#!25.1 models

> hide #25.1

> show #25.1/a:2550-2558

> show #25.1/a:2602&sidechain | #25.1/a:2602@C5',O3'

> show #25.1/a:2580-2585,3019

> show #25.1/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #25.1/a:2549-2559 cadet blue

> color #25.1/a:2602 #0FAB7E

> color #25.1/a:2506 green yellow

> color #25.1/a:2580-2585,3019 crimson

> color #25.1/Y maroon

> color #25.1/v orange

> color #1.12 gray

> volume #23.1 level 0.1

> volume zone #23.1 range 2 nearAtoms #25.1/v:2-5 | #25.1/Y:72-76 | #25.1/a:2549-2559 | (#25.1/a:2602,2506&sideonly) | #25.1/a:2580-2585 | #25.1/a:3019 | #1.12/a:1672

> hide #!25.1 models

> hide #!23.1 models

> hide #!1.12 models

> view A-loop-d10

> show #!1.12#!12.1#!14.1 models

> hide #14.1

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #0FAB7E

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #14.1/Y maroon

> color #14.1/v orange

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sidechain) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!12.1#!14.1 models

> view A-loop-d10

> show #!1.12#!12.1#!14.1 models

> hide #14.1

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #0FAB7E

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #14.1/Y maroon

> color #14.1/v orange

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sidechain) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> view A-loop-d10

> show #!1.12#!12.1#!14.1 models

> hide #14.1

> show #14.1/a:2550-2558

> show #14.1/a:2602&sidechain | #14.1/a:2602@C5',O3'

> show #14.1/a:2506&sidechain

> show #14.1/a:2580-2585,3019

> show #14.1/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.1/a:2549-2559 cadet blue

> color #14.1/a:2602 #0FAB7E

> color #14.1/a:2506 green yellow

> color #14.1/a:2580-2585,3019 crimson

> color #14.1/Y maroon

> color #14.1/v orange

> color #1.12 gray

> volume #12.1 level 0.5

> volume zone #12.1 range 2 nearAtoms #14.1/v:2-5 | #14.1/Y:72-76 | #14.1/a:2549-2559 | (#14.1/a:2602,2506&sidechain) | #14.1/a:2580-2585 | #14.1/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.1.png width 800
> height 600 supersample 4

> hide #!1.12#!12.1#!14.1 models

> view A-loop-d10

> show #!1.12#!12.10#!14.10 models

> hide #14.10

> show #14.10/a:2550-2558

> show #14.10/a:2602&sidechain | #14.10/a:2602@C5',O3'

> show #14.10/a:2506&sidechain

> show #14.10/a:2580-2585,3019

> show #14.10/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.10/a:2549-2559 cadet blue

> color #14.10/a:2602 #0FAB7E

> color #14.10/a:2506 green yellow

> color #14.10/a:2580-2585,3019 crimson

> color #14.10/Y maroon

> color #14.10/v orange

> color #1.12 gray

> volume #12.10 level 0.5

> volume zone #12.10 range 2 nearAtoms #14.10/v:2-5 | #14.10/Y:72-76 | #14.10/a:2549-2559 | (#14.10/a:2602,2506&sidechain) | #14.10/a:2580-2585 | #14.10/a:3019 | #1.12/a:1672

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.0.png width 800
> height 600 supersample 4

> hide #!1.12#!12.10#!14.10 models

> view A-loop-d10

> show #!1.12#!12.3#!14.3 models

> hide #14.3

> show #14.3/a:2550-2558

> show #14.3/a:2602&sidechain | #14.3/a:2602@C5',O3'

> show #14.3/a:2506&sidechain

> show #14.3/a:2580-2585,3019

> show #14.3/Y:72-76/v:2-6

> show #!14.8 models

> hide #14.8

> show #14.8/a:2553-2559

> color #14.8/a:2553-2559 turquoise

> color #14.3/a:2549-2559 cadet blue

> color #14.3/a:2602 #0FAB7E

> color #14.3/a:2506 green yellow

> color #14.3/a:2580-2585,3019 crimson

> color #14.3/Y maroon

> color #14.3/v orange

> color #1.12 gray

> volume #12.3 level 0.5

> volume zone #12.3 range 2 nearAtoms #14.3/a:2549-2559 | #14.3/a:2580-2585 | #14.3/a:3019 | #1.12/a:1672 | #14.8/a:2553-2559

> volume zone #12.3 range 3.5 nearAtoms #14.3/v:2-5 | #14.3/Y:72-76 | (#14.3/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J56_c3 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.30

> show #!12.3 models

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.3.png width 800
> height 600 supersample 4

> close #999

> hide #!14.2 models

> hide #!1.12#!12.3#!14.3 models

> hide #!14.8 models

> view A-loop-d10

> show #!1.12#!12.9#!14.9 models

> hide #14.9

> show #14.9/a:2550-2558

> show #14.9/a:2602&sidechain | #14.9/a:2602@C5',O3'

> show #14.9/a:2506&sidechain

> show #14.9/a:2580-2585,3019

> show #14.9/Y:72-76/v:2-6

> show #1.12/a:1672 | #1.12/a:1673@O5',OP1,OP2,OP3,P | #1.12/a:1671@O3'

> color #14.9/a:2549-2559 cadet blue

> color #14.9/W cadet blue

> color #14.9/a:2602 #0FAB7E

> color #14.9/a:2506 green yellow

> color #14.9/a:2580-2585,3019 crimson

> color #14.9/Y maroon

> color #14.9/v orange

> color #1.12 gray

> volume #12.9 level 0.5

> volume zone #12.9 range 2 nearAtoms #14.9/a:2549-2559 | #14.9/a:2580-2585 | #14.9/a:3019 | #1.12/a:1672 | #14.9/W:36

> volume zone #12.9 range 3.5 nearAtoms #14.9/v:2-5 | #14.9/Y:72-76 | (#14.9/a:2602,2506&sidechain) newMap true modelId 999

Opened d10_J62_c9 zone as #999, grid size 391,421,391, pixel 0.7,0.7,0.7,
shown at step 1, values float32  

> color #999 light sky blue

> volume #999 level 0.25

> show #!12.9 models

> view matrix camera
> -0.48957,-0.74484,0.45335,172.17,-0.87152,0.43447,-0.22734,159.37,-0.027632,-0.50639,-0.86187,106.14

> view A-loop-d10

> view matrix

view matrix camera
-0.92418,-0.38192,0.0041262,148.55,-0.36014,0.86777,-0.34243,157.1,0.1272,-0.31795,-0.93955,110.55  
view matrix models
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1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#999,1,0,0,0,0,1,0,0,0,0,1,0,#999.1,1,0,0,0,0,1,0,0,0,0,1,0  
  

> clip list

Using 2 clip planes:  
near offset -7.7439, axis -0.004,0.342,0.940, point 152.4,172.1,136.1)  
far offset 11.376, axis 0.004,-0.342,-0.940, point 152.3,178.6,154.1)  

> view name A-loop-d10c9

> hbonds #25.9/a:2553-2554 restrict cross #25.9/a:2553-2554 | #25.9/a:2580-2583

Expected a keyword  

> hbonds #25.9/a:2553-2554 restrict cross #25.9/a:2553-2554 | #25.9/a:2580-2583

Expected a keyword  

> hbonds #25.9/a:2553-2554

264 hydrogen bonds found  

> hbonds #25.9/a:2553-2554 restrict both

0 hydrogen bonds found  

> hbonds #25.9/a:2553-2554 #25.9/a:2553-2554

264 hydrogen bonds found  

> hbonds #25.9/a:2553-2554 restrict #25.9

12 hydrogen bonds found  

> hbonds #25.9/a:2553-2554 restrict #25.9 color white

12 hydrogen bonds found  

> hbonds #14.9/a:2553-2554 restrict #14.9 color white

3 hydrogen bonds found  

> hbonds #14.9/a:2553-2554 restrict #14.9 color yellow

3 hydrogen bonds found  

> hbonds #14.9/a:2553-2554 & sidechain restrict #14.9 color yellow

2 hydrogen bonds found  

> view A-loop-d10c9

> view name A-loop-d10c9

> clip list

Using 2 clip planes:  
near offset -7.3732, axis -0.004,0.342,0.940, point 152.4,172.2,136.5)  
far offset 17.083, axis 0.004,-0.342,-0.940, point 152.3,180.6,159.4)  

> ~hbonds #14.9/a:2553-2554 & sidechain restrict #14.9 color yellow

Expected a keyword  

> ~hbonds #14.9/a:2553-2554 & sidechain restrict #14.9

Expected a keyword  

> close #14.9.3

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.9_hoogsteen.png
> width 800 height 600 supersample 4

> close #999

> hbonds #14.9/a:2553-2554 & sidechain restrict #14.9 color yellow

2 hydrogen bonds found  

> save /Users/dalar193/Desktop/A_loop_new/A-loop_delta10_class.9_hoogsteen.png
> width 800 height 600 supersample 4

> close #999

> close #14.9.3

> hide #!1.12#!12.9#!14.9 models

> view A-loop-d9

> show #!1.1#!1.2 models

> hide #1.2

> show #1.2/a:2550-2558

> show #1.2/a:2602&sidechain | #1.2/a:2602@C5',O3'

> show #1.2/a:2580-2585,3019

> show #1.2/Y:72-76/v:2-6

> show #1.2/a:1672 | #1.2/a:1673@O5',OP1,OP2,OP3,P | #1.2/a:1671@O3'

> style #1.2/a:2552@CM2 sphere

Changed 1 atom style  

> size #1.2/a:2552@CM2 atomRadius 0.5

Changed 1 atom radii  

> color #1.2/a:2549-2559 cadet blue

> color #1.2/a:2552@CM2 sea green

> color #1.2/a:2602 #0FAB7E

> color #1.2/a:2506 green yellow

> color #1.2/a:2580-2585,3019 crimson

> color #1.2/Y maroon

> color #1.2/v orange

> color #1.2/a:1665-1680 gray

> volume #1.1 level 0.015

> volume zone #1.1 range 2 nearAtoms #1.2/v:2-5 | #1.2/Y:72-76 | #1.2/a:2549-2559 | (#1.2/a:2602,2506&sideonly) | #1.2/a:2580-2585 | #1.12/a:1672

> save /Users/dalar193/wd/deltaRibosomes/figure_A-loop_new.cxs

——— End of log from Fri Jul 4 17:41:34 2025 ———

opened ChimeraX session  

> windowsize 800 800

> view list

Named views: A-loop-d10, A-loop-d10c9, A-loop-d9, A2503_view4_map,
A2503_view5_map  

> view matrix camera
> 0.99651,0.065722,-0.051478,136.46,0.06267,-0.9963,-0.058813,193.93,-0.055153,0.055382,-0.99694,80.747

> ~clip

> show #!1.1 models

> volume #1.1 level 0.010000

> show #!1.2 models

> hide #1.2

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2450 light pink

> color #1.2/a:830 tan

> color #1.2/a:945 #B3A0EB

> color #1.2/a white target p

> color #1.2/a:2449 firebrick target a

> color #6.4/a:2449#6.5/a:2449#6.6/a:2449#6.8/a:2449 hot pink target a

> color
> #14.1/a:2449#14.2/a:2449#14.4/a:2449#14.5/a:2449#14.6/a:2449#14.8/a:2449 hot
> pink target a

> color #6.10/a:2449#14.10/a:2449 dark turquoise target a

> ~show #1.2

> ~hbonds #1.2

> name to_show #1.2/a:2058-2065,2250-2252,2445-2451,2499-2506/Y:73-76,101/Z:73-76,101 | (#1.2/a:830,945 & sidechain)

> show to_show

> ~cartoon #1.2

> cartoon to_show

> ~cartoon #1.2/a:830,945

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict both color white

43 hydrogen bonds found  

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2449 & sidechain range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> clip near -18.32 far 2.134

> windowsize 600 600

> lighting simple

> lighting full

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting soft

> lighting simple

> lighting full

> lighting soft

> lighting simple

> lighting full

> lighting simple

> view matrix

view matrix camera
0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364  
view matrix models
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,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.3,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0  
  

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449 hot pink

> color #1.2/a:2449 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449@O & sidechain red target a

> color #1.2/a:2449@O* & sidechain red target a

> color #1.2/a:2449@N* & sidechain blue target a

> color #1.2/a:2449@N* blue target a

> color #1.2/a:2449 light pink

> color #1.2/a:2449@N* blue target a

[Repeated 1 time(s)]

> color #1.2/a:2449 light pink

> color #1.2/a:2449@N* blue target a

[Repeated 1 time(s)]

> color #1.2/a:2449 light pink

> color #1.2/a:2449@N* blue target a

> color #1.2/a:2449@O* blue target a

> color #1.2/a:2449 light pink

> color #1.2/a:2449@N* blue target a

> color #1.2/a:2449@O* red target a

> color #1.2/a:2449 light pink

> color #1.2/a:2449,2251,2065,2445@N* blue target a

> color #1.2/a:2449,2251,2065,2445@O* red target a

> color #1.2/a:2449 light pink

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> view matrix

view matrix camera
0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.64,-0.055153,0.055382,-0.99694,80.465  
view matrix models
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,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.3,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0  
  

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.64,-0.055153,0.055382,-0.99694,80.465

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

[Repeated 1 time(s)]

> distance style #1.2/a:2449@N3 #1.2/a:2065@O2 color yellow

> distance #1.2/a:2449@N3 #1.2/a:2065@O2 color yellow

Distance between 8emm #1.2/a H2U 2449 N3 and C 2065 O2: 2.867Å  

> ~distance #1.2/a:2449@N3 #1.2/a:2065@O2 color yellow

Expected fewer arguments  

> hide #!8 models

> show #!8 models

> close #8

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.64,-0.055153,0.055382,-0.99694,80.465

> clip near -18.281 far 4.6142

> clip list

Using 2 clip planes:  
near offset -18.281, axis 0.051,0.059,0.997, point 141.5,184.9,112.3)  
far offset 0.66152, axis -0.051,-0.059,-0.997, point 142.5,186,131.2)  

> hide #1.2/a:830,945

> color #1.2/a:2449@N3 #1.2/a:2065@O2 yellow target hbond

Invalid "target" argument: Character 'h' is not an allowed target, must be one
of acrsbmpfl  

> color #1.2/a:2449@N3 & hbond yellow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color yellow #1.2/a:2449@N3 & hbond

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> ui tool show "Selection Inspector"

> color =sel #ffff3f pseudobonds

> color =sel yellow pseudobonds

> setattr p color yellow #1.2/a:2449@N3:#1.2/a:2065@O2

Expected a keyword  

> setattr p color yellow #1.2/a:2449@N3 #1.2/a:2065@O2

Expected a keyword  

> setattr p color yellow #1.2/a:2449@N3#1.2/a:2065@O2

Expected a keyword  

> setattr p color yellow #1.2/a:2449#1.2/a:2065

Expected a keyword  

> setattr p color yellow #1.2/a:2449,2065

Expected a keyword  

> setattr p color white #1.2/a:2449,2065

Expected a keyword  

> select clear

> setattr p color white #1.2/a:2449,2065

Expected a keyword  

> setattr p color white

Assigning color attribute to 3581 items  

> setattr p color yellow

Assigning color attribute to 3581 items  

> setattr p color whote

Assigning color attribute to 3581 items  
Invalid color name or specifier  

> setattr p color white

Assigning color attribute to 3581 items  

> select clear

> setattr p color yellow #1.2/a:2449,2065

Expected a keyword  

> setattr p color yellow /a:2449/a:2065

Expected a keyword  

> setattr p color yellow /a:2449,2065

Expected a keyword  

> setattr p color yellow /a:2449

Expected a keyword  

> setattr p color yellow #1.2/a:2449

Expected a keyword  

> color #1.2/a:2449 yellow

> color #1.2/a:2449 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> color #1.2/a@O* red target a

> color #1.2/a@N* blue target a

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> windowsize 800 800

> color #1.2/a white target p

> color #1.2/a:2449 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> color #1.2/Z rebecca purple

> color #1.2/a:2055-2065 cornflower blue

> color #1.2/a:2249-2252 peach puff

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2499-2509 green yellow

> color #1.2/a:2583-2585 orange

> color #1.2/a:2602 medium sea green

> color #1.2/a:2576 violet

> color #1.2/v saddle brown

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> save /Users/dalar193/Desktop/image187.png supersample 3

> color #1.2/a@N* blue target a

> color #1.2/a@O* red target a

> save /Users/dalar193/Desktop/image188.png supersample 3

> color #1.2/Z rebecca purple

> color #1.2/a:2055-2065 cornflower blue

> color #1.2/a:2249-2252 peach puff

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2499-2509 green yellow

> color #1.2/a:2583-2585 orange

> color #1.2/a:2602 medium sea green

> color #1.2/a:2576 violet

> color #1.2/v saddle brown

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2501@O* red target a

> color #1.2/a:2449,2251,2065,2445,2446,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2501@O* red target a

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2450 light pink

> color #1.2/a:830 tan

> color #1.2/a:945 #B3A0EB

> color #1.2/a white target p

> color #1.2/a:2449 firebrick target a

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2446,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2501@O* red target a

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> hide #1.2/a:2499

> hide #1.2/a:2499 target c

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> ~clip

> clip near -18.281 far 0.66152

> show #1.2/a:2499 target c

> show #1.2/a:2499

> view matrix

view matrix camera
0.96722,0.2529,-0.02304,138.44,0.23142,-0.84042,0.49004,214.57,0.10457,-0.47931,-0.87139,90.254  
view matrix models
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 
  

> view matrix

view matrix camera
0.93739,0.34815,0.009621,139.68,0.31571,-0.86108,0.39858,210.6,0.14705,-0.37059,-0.91708,88.037  
view matrix models
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 
  

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* red target a

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2450 light pink

> color #1.2/a:830 tan

> color #1.2/a:945 #B3A0EB

> color #1.2/a white target p

> color #1.2/a:2449 firebrick target a

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065@N* blue target a

> color #1.2/a:2449,2251,2065@O* red target a

> color #1.2/a:2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2450 light pink

> color #1.2/a:830 tan

> color #1.2/a:945 #B3A0EB

> color #1.2/a white target p

> color #1.2/a:2449 firebrick target a

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a:2499-2506 light green

> color #1.2/a:2499-2506 light yellow

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2450 light pink

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> view matrix

view matrix camera
0.93739,0.34815,0.009621,139.68,0.31571,-0.86108,0.39858,210.6,0.14705,-0.37059,-0.91708,88.037  
view matrix models
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,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.3,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0  
  

> view matrix camera
> 0.93739,0.34815,0.009621,139.68,0.31571,-0.86108,0.39858,210.6,0.14705,-0.37059,-0.91708,88.037

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> view matrix camera
> 0.93739,0.34815,0.009621,139.68,0.31571,-0.86108,0.39858,210.6,0.14705,-0.37059,-0.91708,88.037

> lighting soft

> lighting full

> lighting simple

> lighting full

> lighting simple

[Repeated 1 time(s)]

> lighting full

> lighting simple

> lighting full

> lighting simple

> clip list

Using 2 clip planes:  
near offset -23.642, axis 0.032,-0.524,0.851, point 145.5,193.5,109.4)  
far offset -1.0561, axis -0.032,0.524,-0.851, point 146.2,181.7,128.6)  

> view matrix

view matrix camera
0.95435,0.29697,-0.031918,138.01,0.26905,-0.80839,0.52356,215.82,0.12968,-0.50826,-0.85138,91.091  
view matrix models
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 
  

> view matrix camera
> 0.95435,0.29697,-0.031918,138.01,0.26905,-0.80839,0.52356,215.82,0.12968,-0.50826,-0.85138,91.091

> windowsize 600 600

> hide #!1.1 models

> hide #!1.2 models

> show #!1.1 models

> volume #1.1 level 0.010000

> show #!1.2 models

> hide #1.2

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 light pink

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2065,2250-2252,2445-2451,2499-2506/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon to_show

> ~cartoon #1.2/a:830,945

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict both color white

38 hydrogen bonds found  

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2449 & sidechain range 2

> bond #1.2/Y:76@N3':101@C

Created 0 bonds  

> bond #1.2/Z:76@N3':101@C

Created 0 bonds  

> hide #1.2/a:2553@N2|#1.2/Y:75@N3 target p

> style #1.2/Y:101 ball

Changed 8 atom styles  

> style #1.2/Z:101 ball

Changed 8 atom styles  

> size #1.2/Y:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> size #1.2/Z:101:76@N3' ballScale 0.10 stickRadius 0.06

Changed 8 bond radii, 1 ball scales  

> ~clip

> clip near -18.281 far 0.66152

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> ~clip

> clip near -18.281 far 0.66152

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 tan

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #1.2

> ~hbonds #1.2

> name to_show
> #1.2/a:2058-2065,2250-2252,2445-2451,2499-2506/Y:73-76,101/Z:73-76,101

> show to_show

> ~cartoon #1.2

> cartoon to_show

> ~cartoon #1.2/a:830,945

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict both color white

38 hydrogen bonds found  

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> color #1.2/a:2445-2451 sandy brown

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 sandy brown

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> hide #1.2/Y:73-76,101/Z:73-76,101

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 tan

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 burly wood

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 yellow target p

> color #1.2/a:2449,2065 yellow target p

> color #1.2/a:2449,2445 yellow target p

> color #1.2/a:2449,2446 yellow target p

> color #1.2/a:2449,2501 yellow target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 gold

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 slate blue target p

> color #1.2/a:2449,2065 slate blue target p

> color #1.2/a:2449,2445 slate blue target p

> color #1.2/a:2449,2446 slate blue target p

> color #1.2/a:2449,2501 slate blue target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 khaki

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 slate blue target p

> color #1.2/a:2449,2065 slate blue target p

> color #1.2/a:2449,2445 slate blue target p

> color #1.2/a:2449,2446 slate blue target p

> color #1.2/a:2449,2501 slate blue target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 navajo white

> color #1.2/a:2499-2506 green yellow

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 magenta target p

> color #1.2/a:2449,2065 magenta target p

> color #1.2/a:2449,2445 magenta target p

> color #1.2/a:2449,2446 magenta target p

> color #1.2/a:2449,2501 magenta target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 navajo white

> color #1.2/a:2499-2506 spring green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 magenta target p

> color #1.2/a:2449,2065 magenta target p

> color #1.2/a:2449,2445 magenta target p

> color #1.2/a:2449,2446 magenta target p

> color #1.2/a:2449,2501 magenta target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 navajo white

> color #1.2/a:2499-2506 spring green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 salmon target p

> color #1.2/a:2449,2065 salmon target p

> color #1.2/a:2449,2445 salmon target p

> color #1.2/a:2449,2446 salmon target p

> color #1.2/a:2449,2501 salmon target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 navajo white

> color #1.2/a:2499-2506 lawn green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 salmon target p

> color #1.2/a:2449,2065 salmon target p

> color #1.2/a:2449,2445 salmon target p

> color #1.2/a:2449,2446 salmon target p

> color #1.2/a:2449,2501 salmon target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 #FFEA8D

> color #1.2/a:2499-2506 lawn green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 salmon target p

> color #1.2/a:2449,2065 salmon target p

> color #1.2/a:2449,2445 salmon target p

> color #1.2/a:2449,2446 salmon target p

> color #1.2/a:2449,2501 salmon target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 #FFD856

> color #1.2/a:2499-2506 lawn green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 salmon target p

> color #1.2/a:2449,2065 salmon target p

> color #1.2/a:2449,2445 salmon target p

> color #1.2/a:2449,2446 salmon target p

> color #1.2/a:2449,2501 salmon target p

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 #FFDB66

> color #1.2/a:2499-2506 lawn green

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> color #1.2/a white target p

> color #1.2/a:2449,2251 salmon target p

> color #1.2/a:2449,2065 salmon target p

> color #1.2/a:2449,2445 salmon target p

> color #1.2/a:2449,2446 salmon target p

> color #1.2/a:2449,2501 salmon target p

> color #1.2/a:2449,2251 cyan target p

> color #1.2/a:2449,2065 cyan target p

> color #1.2/a:2449,2445 cyan target p

> color #1.2/a:2449,2446 cyan target p

> color #1.2/a:2449,2501 cyan target p

> color #1.2/a spring green target p

> color #1.2/a white target p

> color #1.2/a:2449,2251 spring green target p

> color #1.2/a:2449,2065 spring green target p

> color #1.2/a:2449,2445 spring green target p

> color #1.2/a:2449,2446 spring green target p

> color #1.2/a:2449,2501 spring green target p

> windowsize 600 600

> show #!1.1 models

> volume #1.1 level 0.010000

> show #!1.2 models

> hide #1.2

> color #1.2/a:2249-2252 sea green

> color #1.2/a:2058-2066 cornflower blue

> color #1.2/a:2445-2451 #FFDB66

> color #1.2/a:2499-2506 lawn green

> color #1.2/a:2449 hot pink target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #1.2

> ~hbonds #1.2

> name to_show #1.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #1.2

> cartoon to_show

> transparency #1.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #1.2/a white target p

> color #1.2/a:2449,2251 spring green target p

> color #1.2/a:2449,2065 spring green target p

> color #1.2/a:2449,2445 spring green target p

> color #1.2/a:2449,2446 spring green target p

> color #1.2/a:2449,2501 spring green target p

> volume #1.1 color black transparency 0.8

> volume zone #1.1 nearAtoms #1.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_8emm_map.png height 600
> width 600 supersample 3

> hide #!1.1 models

> hide #!1.2 models

> ç√

Unknown command: ç√  

> show #!1.6 models

> volume #1.6 level 0.006500

> show #!1.7 models

> hide #1.7

> color #1.7/a:2249-2252 sea green

> color #1.7/a:2058-2066 cornflower blue

> color #1.7/a:2445-2451 #FFDB66

> color #1.7/a:2499-2506 lawn green

> color #1.7/a:2449 hot pink target a

> color #1.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #1.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #1.7

> ~hbonds #1.7

> name to_show #1.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #1.7

> cartoon to_show

> transparency #1.7 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #1.7/a white target p

> color #1.7/a:2449,2251 spring green target p

> color #1.7/a:2449,2065 spring green target p

> color #1.7/a:2449,2445 spring green target p

> color #1.7/a:2449,2446 spring green target p

> color #1.7/a:2449,2501 spring green target p

> volume #1.6 color black transparency 0.8

> volume zone #1.6 nearAtoms #1.7/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_8cgk_map.png height 600
> width 600 supersample 3

> hide #!1.6 models

> hide #!1.7 models

> show #!2.2 models

> volume #2.2 level 0.013000

> show #!6.2 models

> hide #6.2

> color #6.2/a:2249-2252 sea green

> color #6.2/a:2058-2066 cornflower blue

> color #6.2/a:2445-2451 #FFDB66

> color #6.2/a:2499-2506 lawn green

> color #6.2/a:2449 hot pink target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.2

> ~hbonds #6.2

> name to_show #6.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.2

> cartoon to_show

> transparency #6.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.2/a white target p

> color #6.2/a:2449,2251 spring green target p

> color #6.2/a:2449,2065 spring green target p

> color #6.2/a:2449,2445 spring green target p

> color #6.2/a:2449,2446 spring green target p

> color #6.2/a:2449,2501 spring green target p

> volume #2.2 color black transparency 0.8

> volume zone #2.2 nearAtoms #6.2/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> volume zone #2.2 nearAtoms (#6.2/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_ape1.png height 600
> width 600 supersample 3

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> ui tool show "Model Panel"

> hide #!2.2 models

> hide #!6.2 models

> hide #!6.6 models

> show #!4.10 models

> volume #4.10 level 0.400000

> show #!6.10 models

> hide #6.10

> color #6.10/a:2249-2252 sea green

> color #6.10/a:2058-2066 cornflower blue

> color #6.10/a:2445-2451 #FFDB66

> color #6.10/a:2499-2506 lawn green

> color #6.10/a:2449 hot pink target a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.10

> ~hbonds #6.10

> name to_show #6.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.10

> cartoon to_show

> transparency #6.10 60 target c

> hbonds to_show & sidechain restrict both color white

29 hydrogen bonds found  

> color #6.10/a white target p

> color #6.10/a:2449,2251 spring green target p

> color #6.10/a:2449,2065 spring green target p

> color #6.10/a:2449,2445 spring green target p

> color #6.10/a:2449,2446 spring green target p

> color #6.10/a:2449,2501 spring green target p

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> volume zone #4.10 nearAtoms (#6.10/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J83_cl0.png height 600
> width 600 supersample 3

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> hide #!4.10 models

> hide #!6.10 models

> hide #!6.6 models

> show #!4.10 models

> volume #4.10 level 0.400000

> show #!6.10 models

> hide #6.10

> color #6.10/a:2249-2252 sea green

> color #6.10/a:2058-2066 cornflower blue

> color #6.10/a:2445-2451 #FFDB66

> color #6.10/a:2499-2506 lawn green

> color #6.10/a:2449 hot pink target a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.10

> ~hbonds #6.10

> name to_show #6.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.10

> cartoon to_show

> transparency #6.10 60 target c

> hbonds to_show & sidechain restrict both color white

29 hydrogen bonds found  

> color #6.10/a white target p

> color #6.10/a:2449,2251 spring green target p

> color #6.10/a:2449,2065 spring green target p

> color #6.10/a:2449,2445 spring green target p

> color #6.10/a:2449,2446 spring green target p

> color #6.10/a:2449,2501 spring green target p

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> color #6.6/a:2449 white

> volume zone #4.10 nearAtoms (#6.10/a:2449 | #6.6/a:2449 ) & sidechain range 2

> color #6.6/a:2449 hot pink target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> view matrix camera
> 0.99651,0.065722,-0.051478,135.55,0.06267,-0.9963,-0.058813,192.63,-0.055153,0.055382,-0.99694,80.364

> show #!4.10 models

> volume #4.10 level 0.400000

> show #!6.10 models

> hide #6.10

> color #6.10/a:2249-2252 sea green

> color #6.10/a:2058-2066 cornflower blue

> color #6.10/a:2445-2451 #FFDB66

> color #6.10/a:2499-2506 lawn green

> color #6.10/a:2449 hot pink target a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.10

> ~hbonds #6.10

> name to_show #6.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.10

> cartoon to_show

> transparency #6.10 60 target c

> hbonds to_show & sidechain restrict both color white

29 hydrogen bonds found  

> color #6.10/a white target p

> color #6.10/a:2449,2251 spring green target p

> color #6.10/a:2449,2065 spring green target p

> color #6.10/a:2449,2445 spring green target p

> color #6.10/a:2449,2446 spring green target p

> color #6.10/a:2449,2501 spring green target p

> volume #4.10 color black transparency 0.8

> volume zone #4.10 nearAtoms #6.10/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #4.10 nearAtoms (#6.10/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J83_cl0.png height 600
> width 600 supersample 3

> hide #!4.10 models

> hide #!6.10 models

> hide #!6.6 models

> show #!4.1 models

> volume #4.1 level 0.400000

> show #!6.1 models

> hide #6.1

> color #6.1/a:2249-2252 sea green

> color #6.1/a:2058-2066 cornflower blue

> color #6.1/a:2445-2451 #FFDB66

> color #6.1/a:2499-2506 lawn green

> color #6.1/a:2449 hot pink target a

> color #6.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.1

> ~hbonds #6.1

> name to_show #6.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.1

> cartoon to_show

> transparency #6.1 60 target c

> hbonds to_show & sidechain restrict both color white

20 hydrogen bonds found  

> color #6.1/a white target p

> color #6.1/a:2449,2251 spring green target p

> color #6.1/a:2449,2065 spring green target p

> color #6.1/a:2449,2445 spring green target p

> color #6.1/a:2449,2446 spring green target p

> color #6.1/a:2449,2501 spring green target p

> volume #4.1 color black transparency 0.8

> volume zone #4.1 nearAtoms #6.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J84_cl1.png height 600
> width 600 supersample 3

> hide #!4.1 models

> hide #!6.1 models

> show #!4.2 models

> volume #4.2 level 0.400000

> show #!6.2 models

> hide #6.2

> color #6.2/a:2249-2252 sea green

> color #6.2/a:2058-2066 cornflower blue

> color #6.2/a:2445-2451 #FFDB66

> color #6.2/a:2499-2506 lawn green

> color #6.2/a:2449 hot pink target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.2

> ~hbonds #6.2

> name to_show #6.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.2

> cartoon to_show

> transparency #6.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.2/a white target p

> color #6.2/a:2449,2251 spring green target p

> color #6.2/a:2449,2065 spring green target p

> color #6.2/a:2449,2445 spring green target p

> color #6.2/a:2449,2446 spring green target p

> color #6.2/a:2449,2501 spring green target p

> volume #4.2 color black transparency 0.8

> volume zone #4.2 nearAtoms #6.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J85_cl2.png height 600
> width 600 supersample 3

> hide #!4.2 models

> hide #!6.2 models

> show #!4.3 models

> volume #4.3 level 0.400000

> show #!6.3 models

> hide #6.3

> color #6.3/a:2249-2252 sea green

> color #6.3/a:2058-2066 cornflower blue

> color #6.3/a:2445-2451 #FFDB66

> color #6.3/a:2499-2506 lawn green

> color #6.3/a:2449 hot pink target a

> color #6.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.3

> ~hbonds #6.3

> name to_show #6.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.3

> cartoon to_show

> transparency #6.3 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #6.3/a white target p

> color #6.3/a:2449,2251 spring green target p

> color #6.3/a:2449,2065 spring green target p

> color #6.3/a:2449,2445 spring green target p

> color #6.3/a:2449,2446 spring green target p

> color #6.3/a:2449,2501 spring green target p

> volume #4.3 color black transparency 0.8

> volume zone #4.3 nearAtoms #6.3/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #4.3 nearAtoms (#6.3/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J86_cl3.png height 600
> width 600 supersample 3

> hide #!4.3 models

> hide #!6.3 models

> hide #!6.6 models

> show #!4.4 models

> volume #4.4 level 0.400000

> show #!6.4 models

> hide #6.4

> color #6.4/a:2249-2252 sea green

> color #6.4/a:2058-2066 cornflower blue

> color #6.4/a:2445-2451 #FFDB66

> color #6.4/a:2499-2506 lawn green

> color #6.4/a:2449 hot pink target a

> color #6.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.4

> ~hbonds #6.4

> name to_show #6.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.4

> cartoon to_show

> transparency #6.4 60 target c

> hbonds to_show & sidechain restrict both color white

29 hydrogen bonds found  

> color #6.4/a white target p

> color #6.4/a:2449,2251 spring green target p

> color #6.4/a:2449,2065 spring green target p

> color #6.4/a:2449,2445 spring green target p

> color #6.4/a:2449,2446 spring green target p

> color #6.4/a:2449,2501 spring green target p

> volume #4.4 color black transparency 0.8

> volume zone #4.4 nearAtoms #6.4/a:2449 & sidechain range 2

> show #!6.2 models

> ~show #6.2

> ~cartoon #6.2

> show #6.2/a:2449

> volume zone #4.4 nearAtoms (#6.4/a:2449 | #6.2/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J87_cl4.png height 600
> width 600 supersample 3

> hide #!4.4 models

> hide #!6.4 models

> hide #!6.2 models

> show #!4.5 models

> volume #4.5 level 0.300000

> show #!6.5 models

> hide #6.5

> color #6.5/a:2249-2252 sea green

> color #6.5/a:2058-2066 cornflower blue

> color #6.5/a:2445-2451 #FFDB66

> color #6.5/a:2499-2506 lawn green

> color #6.5/a:2449 hot pink target a

> color #6.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.5

> ~hbonds #6.5

> name to_show #6.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.5

> cartoon to_show

> transparency #6.5 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.5/a white target p

> color #6.5/a:2449,2251 spring green target p

> color #6.5/a:2449,2065 spring green target p

> color #6.5/a:2449,2445 spring green target p

> color #6.5/a:2449,2446 spring green target p

> color #6.5/a:2449,2501 spring green target p

> volume #4.5 color black transparency 0.8

> volume zone #4.5 nearAtoms #6.5/a:2449 & sidechain range 2

> show #!6.2 models

> ~show #6.2

> ~cartoon #6.2

> show #6.2/a:2449

> volume zone #4.5 nearAtoms (#6.5/a:2449 | #6.2/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J88_cl5.png height 600
> width 600 supersample 3

> hide #!4.5 models

> hide #!6.5 models

> hide #!6.2 models

> show #!4.6 models

> volume #4.6 level 0.400000

> show #!6.6 models

> hide #6.6

> color #6.6/a:2249-2252 sea green

> color #6.6/a:2058-2066 cornflower blue

> color #6.6/a:2445-2451 #FFDB66

> color #6.6/a:2499-2506 lawn green

> color #6.6/a:2449 hot pink target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.6

> ~hbonds #6.6

> name to_show #6.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.6

> cartoon to_show

> transparency #6.6 60 target c

> hbonds to_show & sidechain restrict both color white

30 hydrogen bonds found  

> color #6.6/a white target p

> color #6.6/a:2449,2251 spring green target p

> color #6.6/a:2449,2065 spring green target p

> color #6.6/a:2449,2445 spring green target p

> color #6.6/a:2449,2446 spring green target p

> color #6.6/a:2449,2501 spring green target p

> volume #4.6 color black transparency 0.8

> volume zone #4.6 nearAtoms #6.6/a:2449 & sidechain range 2

> ~show #6.6/a:2059-2060

> show #!6.2 models

> ~show #6.2

> ~cartoon #6.2

> show #6.2/a:2449

> volume zone #4.6 nearAtoms (#6.6/a:2449 | #6.2/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J89_cl6.png height 600
> width 600 supersample 3

> hide #!4.6 models

> hide #!6.6 models

> hide #!6.2 models

> show #!4.7 models

> volume #4.7 level 0.400000

> show #!6.7 models

> hide #6.7

> color #6.7/a:2249-2252 sea green

> color #6.7/a:2058-2066 cornflower blue

> color #6.7/a:2445-2451 #FFDB66

> color #6.7/a:2499-2506 lawn green

> color #6.7/a:2449 hot pink target a

> color #6.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.7

> ~hbonds #6.7

> name to_show #6.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.7

> cartoon to_show

> transparency #6.7 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #6.7/a white target p

> color #6.7/a:2449,2251 spring green target p

> color #6.7/a:2449,2065 spring green target p

> color #6.7/a:2449,2445 spring green target p

> color #6.7/a:2449,2446 spring green target p

> color #6.7/a:2449,2501 spring green target p

> volume #4.7 color black transparency 0.8

> volume zone #4.7 nearAtoms #6.7/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J90_cl7.png height 600
> width 600 supersample 3

> hide #!4.7 models

> hide #!6.7 models

> show #!4.8 models

> volume #4.8 level 0.400000

> show #!6.8 models

> hide #6.8

> color #6.8/a:2249-2252 sea green

> color #6.8/a:2058-2066 cornflower blue

> color #6.8/a:2445-2451 #FFDB66

> color #6.8/a:2499-2506 lawn green

> color #6.8/a:2449 hot pink target a

> color #6.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.8

> ~hbonds #6.8

> name to_show #6.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.8

> cartoon to_show

> transparency #6.8 60 target c

> hbonds to_show & sidechain restrict both color white

28 hydrogen bonds found  

> color #6.8/a white target p

> color #6.8/a:2449,2251 spring green target p

> color #6.8/a:2449,2065 spring green target p

> color #6.8/a:2449,2445 spring green target p

> color #6.8/a:2449,2446 spring green target p

> color #6.8/a:2449,2501 spring green target p

> volume #4.8 color black transparency 0.8

> volume zone #4.8 nearAtoms #6.8/a:2449 & sidechain range 2

> show #!6.2 models

> ~show #6.2

> ~cartoon #6.2

> show #6.2/a:2449

> volume zone #4.8 nearAtoms (#6.8/a:2449 | #6.2/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J91_cl8.png height 600
> width 600 supersample 3

> hide #!4.8 models

> hide #!6.8 models

> hide #!6.2 models

> show #!4.9 models

> volume #4.9 level 0.400000

> show #!6.9 models

> hide #6.9

> color #6.9/a:2249-2252 sea green

> color #6.9/a:2058-2066 cornflower blue

> color #6.9/a:2445-2451 #FFDB66

> color #6.9/a:2499-2506 lawn green

> color #6.9/a:2449 hot pink target a

> color #6.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.9

> ~hbonds #6.9

> name to_show #6.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.9

> cartoon to_show

> transparency #6.9 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #6.9/a white target p

> color #6.9/a:2449,2251 spring green target p

> color #6.9/a:2449,2065 spring green target p

> color #6.9/a:2449,2445 spring green target p

> color #6.9/a:2449,2446 spring green target p

> color #6.9/a:2449,2501 spring green target p

> volume #4.9 color black transparency 0.8

> volume zone #4.9 nearAtoms #6.9/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #4.9 nearAtoms (#6.9/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_J92_cl9.png height 600
> width 600 supersample 3

> hide #!4.9 models

> hide #!6.9 models

> hide #!6.6 models

> show #!2.2 models

> volume #2.2 level 0.013000

> show #!6.2 models

> hide #6.2

> color #6.2/a:2249-2252 sea green

> color #6.2/a:2058-2066 cornflower blue

> color #6.2/a:2445-2451 #FFDB66

> color #6.2/a:2499-2506 lawn green

> color #6.2/a:2449 hot pink target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.2

> ~hbonds #6.2

> name to_show #6.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.2

> cartoon to_show

> transparency #6.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.2/a white target p

> color #6.2/a:2449,2251 spring green target p

> color #6.2/a:2449,2065 spring green target p

> color #6.2/a:2449,2445 spring green target p

> color #6.2/a:2449,2446 spring green target p

> color #6.2/a:2449,2501 spring green target p

> volume #2.2 color black transparency 0.8

> volume zone #2.2 nearAtoms #6.2/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #2.2 nearAtoms (#6.2/a:2449 | #6.6/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_ape1.png height 600
> width 600 supersample 3

> hide #!2.2 models

> hide #!6.2 models

> hide #!6.6 models

> show #!2.3 models

> volume #2.3 level 0.013000

> show #!6.6 models

> hide #6.6

> color #6.6/a:2249-2252 sea green

> color #6.6/a:2058-2066 cornflower blue

> color #6.6/a:2445-2451 #FFDB66

> color #6.6/a:2499-2506 lawn green

> color #6.6/a:2449 hot pink target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.6

> ~hbonds #6.6

> name to_show #6.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.6

> cartoon to_show

> transparency #6.6 60 target c

> hbonds to_show & sidechain restrict both color white

30 hydrogen bonds found  

> color #6.6/a white target p

> color #6.6/a:2449,2251 spring green target p

> color #6.6/a:2449,2065 spring green target p

> color #6.6/a:2449,2445 spring green target p

> color #6.6/a:2449,2446 spring green target p

> color #6.6/a:2449,2501 spring green target p

> volume #2.3 color black transparency 0.8

> volume zone #2.3 nearAtoms #6.6/a:2449 & sidechain range 2

> ~show #6.6/a:2059-2060

> show #!6.2 models

> ~show #6.2

> ~cartoon #6.2

> show #6.2/a:2449

> volume zone #2.3 nearAtoms (#6.6/a:2449 | #6.2/a:2449 ) & sidechain range 2

> volume zone #2.3 nearAtoms (#6.6/a:2449 | #6.2/a:2449 ) & sidechain range 1.5

> color #6.6/a:2251@O2' | #6.6/a:2449@O2 yellow target p

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_ape2.png height 600
> width 600 supersample 3

> hide #!2.3 models

> hide #!6.6 models

> hide #!6.2 models

> show #!2.4 models

> volume #2.4 level 0.013000

> show #!6.2 models

> hide #6.2

> color #6.2/a:2249-2252 sea green

> color #6.2/a:2058-2066 cornflower blue

> color #6.2/a:2445-2451 #FFDB66

> color #6.2/a:2499-2506 lawn green

> color #6.2/a:2449 hot pink target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.2

> ~hbonds #6.2

> name to_show #6.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.2

> cartoon to_show

> transparency #6.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.2/a white target p

> color #6.2/a:2449,2251 spring green target p

> color #6.2/a:2449,2065 spring green target p

> color #6.2/a:2449,2445 spring green target p

> color #6.2/a:2449,2446 spring green target p

> color #6.2/a:2449,2501 spring green target p

> volume #2.4 color black transparency 0.8

> volume zone #2.4 nearAtoms #6.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_ape3.png height 600
> width 600 supersample 3

> hide #!2.4 models

> hide #!6.2 models

> show #!2.5 models

> volume #2.5 level 0.013000

> show #!6.2 models

> hide #6.2

> color #6.2/a:2249-2252 sea green

> color #6.2/a:2058-2066 cornflower blue

> color #6.2/a:2445-2451 #FFDB66

> color #6.2/a:2499-2506 lawn green

> color #6.2/a:2449 hot pink target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target a

> color #6.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.2

> ~hbonds #6.2

> name to_show #6.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.2

> cartoon to_show

> transparency #6.2 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #6.2/a white target p

> color #6.2/a:2449,2251 spring green target p

> color #6.2/a:2449,2065 spring green target p

> color #6.2/a:2449,2445 spring green target p

> color #6.2/a:2449,2446 spring green target p

> color #6.2/a:2449,2501 spring green target p

> volume #2.5 color black transparency 0.8

> volume zone #2.5 nearAtoms #6.2/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #2.5 nearAtoms (#6.2/a:2449 | #6.6/a:2449 ) & sidechain range 2

> ~show #6.2/a:2250-2252

> ~cartoon #6.2/a:2449,2250-2252

> show #6.6/a:2449,2250-2252

> cartoon #6.6/a:2449,2250-2252

> hbonds #6.6/a:2449@O2 restrict #6.6/a:2251@O2' color yellow

1 hydrogen bonds found  

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_pe.png height 600 width
> 600 supersample 3

> hide #!2.5 models

> hide #!6.2 models

> hide #!6.6 models

> show #!2.6 models

> volume #2.6 level 0.009000

> show #!6.10 models

> hide #6.10

> color #6.10/a:2249-2252 sea green

> color #6.10/a:2058-2066 cornflower blue

> color #6.10/a:2445-2451 #FFDB66

> color #6.10/a:2499-2506 lawn green

> color #6.10/a:2449 hot pink target a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #6.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #6.10

> ~hbonds #6.10

> name to_show #6.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #6.10

> cartoon to_show

> transparency #6.10 60 target c

> hbonds to_show & sidechain restrict both color white

29 hydrogen bonds found  

> color #6.10/a white target p

> color #6.10/a:2449,2251 spring green target p

> color #6.10/a:2449,2065 spring green target p

> color #6.10/a:2449,2445 spring green target p

> color #6.10/a:2449,2446 spring green target p

> color #6.10/a:2449,2501 spring green target p

> volume #2.6 color black transparency 0.8

> volume zone #2.6 nearAtoms #6.10/a:2449 & sidechain range 2

> show #!6.6 models

> ~show #6.6

> ~cartoon #6.6

> show #6.6/a:2449

> volume zone #2.6 nearAtoms (#6.10/a:2449 | #6.6/a:2449 ) & sidechain range 2

> ~show #6.10/a:2250-2252

> ~cartoon #6.10/a:2449,2250-2252

> show #6.6/a:2449,2250-2252

> cartoon #6.6/a:2449,2250-2252

> hbonds #6.6/a:2449@O2 restrict #6.6/a:2251@O2' color yellow

1 hydrogen bonds found  

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d9_e.png height 600 width
> 600 supersample 3

> hide #!2.6 models

> hide #!6.10 models

> hide #!6.6 models

> show #!10.1 models

> volume #10.1 level 0.011000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #10.1 color black transparency 0.8

> volume zone #10.1 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_ape.png height 600
> width 600 supersample 3

> hide #!10.1 models

> hide #!14.3 models

> show #!10.2 models

> volume #10.2 level 0.011000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #10.2 color black transparency 0.8

> volume zone #10.2 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #10.2 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_pe.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.3 models

> show #!10.3 models

> volume #10.3 level 0.011000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #10.3 color black transparency 0.8

> volume zone #10.3 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.5 models

> ~show #14.5

> ~cartoon #14.5

> show #14.5/a:2449

> volume zone #10.3 nearAtoms (#14.10/a:2449 | #14.5/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_e.png height 600 width
> 600 supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.5 models

> show #!12.10 models

> volume #12.10 level 0.350000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.10 nearAtoms (#14.10/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J53_c0.png height 600
> width 600 supersample 3

> hide #!12.10 models

> hide #!14.10 models

> hide #!14.4 models

> show #!12.1 models

> volume #12.1 level 0.350000

> show #!14.1 models

> hide #14.1

> color #14.1/a:2249-2252 sea green

> color #14.1/a:2058-2066 cornflower blue

> color #14.1/a:2445-2451 #FFDB66

> color #14.1/a:2499-2506 lawn green

> color #14.1/a:2449 hot pink target a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.1

> ~hbonds #14.1

> name to_show #14.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.1

> cartoon to_show

> transparency #14.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #14.1/a white target p

> color #14.1/a:2449,2251 spring green target p

> color #14.1/a:2449,2065 spring green target p

> color #14.1/a:2449,2445 spring green target p

> color #14.1/a:2449,2446 spring green target p

> color #14.1/a:2449,2501 spring green target p

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J54_c1.png height 600
> width 600 supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> volume #12.2 level 0.350000

> show #!14.2 models

> hide #14.2

> color #14.2/a:2249-2252 sea green

> color #14.2/a:2058-2066 cornflower blue

> color #14.2/a:2445-2451 #FFDB66

> color #14.2/a:2499-2506 lawn green

> color #14.2/a:2449 hot pink target a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.2

> ~hbonds #14.2

> name to_show #14.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.2

> cartoon to_show

> transparency #14.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #14.2/a white target p

> color #14.2/a:2449,2251 spring green target p

> color #14.2/a:2449,2065 spring green target p

> color #14.2/a:2449,2445 spring green target p

> color #14.2/a:2449,2446 spring green target p

> color #14.2/a:2449,2501 spring green target p

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.2 nearAtoms (#14.2/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J55_c2.png height 600
> width 600 supersample 3

> hide #!12.2 models

> hide #!14.2 models

> hide #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.350000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J56_c3.png height 600
> width 600 supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> volume #12.4 level 0.350000

> show #!14.4 models

> hide #14.4

> color #14.4/a:2249-2252 sea green

> color #14.4/a:2058-2066 cornflower blue

> color #14.4/a:2445-2451 #FFDB66

> color #14.4/a:2499-2506 lawn green

> color #14.4/a:2449 hot pink target a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.4

> ~hbonds #14.4

> name to_show #14.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.4

> cartoon to_show

> transparency #14.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.4/a white target p

> color #14.4/a:2449,2251 spring green target p

> color #14.4/a:2449,2065 spring green target p

> color #14.4/a:2449,2445 spring green target p

> color #14.4/a:2449,2446 spring green target p

> color #14.4/a:2449,2501 spring green target p

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J57_c4.png height 600
> width 600 supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> volume #12.5 level 0.350000

> show #!14.5 models

> hide #14.5

> color #14.5/a:2249-2252 sea green

> color #14.5/a:2058-2066 cornflower blue

> color #14.5/a:2445-2451 #FFDB66

> color #14.5/a:2499-2506 lawn green

> color #14.5/a:2449 hot pink target a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.5

> ~hbonds #14.5

> name to_show #14.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.5

> cartoon to_show

> transparency #14.5 60 target c

> hbonds to_show & sidechain restrict both color white

20 hydrogen bonds found  

> color #14.5/a white target p

> color #14.5/a:2449,2251 spring green target p

> color #14.5/a:2449,2065 spring green target p

> color #14.5/a:2449,2445 spring green target p

> color #14.5/a:2449,2446 spring green target p

> color #14.5/a:2449,2501 spring green target p

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.5 nearAtoms (#14.5/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J58_c5.png height 600
> width 600 supersample 3

> hide #!12.5 models

> hide #!14.5 models

> hide #!14.3 models

> show #!12.6 models

> volume #12.6 level 0.350000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.6 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J59_c6.png height 600
> width 600 supersample 3

> hide #!12.6 models

> hide #!14.6 models

> hide #!14.3 models

> show #!12.7 models

> volume #12.7 level 0.350000

> show #!14.7 models

> hide #14.7

> color #14.7/a:2249-2252 sea green

> color #14.7/a:2058-2066 cornflower blue

> color #14.7/a:2445-2451 #FFDB66

> color #14.7/a:2499-2506 lawn green

> color #14.7/a:2449 hot pink target a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.7

> ~hbonds #14.7

> name to_show #14.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.7

> cartoon to_show

> transparency #14.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.7/a white target p

> color #14.7/a:2449,2251 spring green target p

> color #14.7/a:2449,2065 spring green target p

> color #14.7/a:2449,2445 spring green target p

> color #14.7/a:2449,2446 spring green target p

> color #14.7/a:2449,2501 spring green target p

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.7 nearAtoms (#14.7/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J60_c7.png height 600
> width 600 supersample 3

> hide #!12.7 models

> hide #!14.7 models

> hide #!14.4 models

> show #!12.8 models

> volume #12.8 level 0.350000

> show #!14.8 models

> hide #14.8

> color #14.8/a:2249-2252 sea green

> color #14.8/a:2058-2066 cornflower blue

> color #14.8/a:2445-2451 #FFDB66

> color #14.8/a:2499-2506 lawn green

> color #14.8/a:2449 hot pink target a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.8

> ~hbonds #14.8

> name to_show #14.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.8

> cartoon to_show

> transparency #14.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.8/a white target p

> color #14.8/a:2449,2251 spring green target p

> color #14.8/a:2449,2065 spring green target p

> color #14.8/a:2449,2445 spring green target p

> color #14.8/a:2449,2446 spring green target p

> color #14.8/a:2449,2501 spring green target p

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J61_c8.png height 600
> width 600 supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> volume #12.9 level 0.350000

> show #!14.9 models

> hide #14.9

> color #14.9/a:2249-2252 sea green

> color #14.9/a:2058-2066 cornflower blue

> color #14.9/a:2445-2451 #FFDB66

> color #14.9/a:2499-2506 lawn green

> color #14.9/a:2449 hot pink target a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.9

> ~hbonds #14.9

> name to_show #14.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.9

> cartoon to_show

> transparency #14.9 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.9/a white target p

> color #14.9/a:2449,2251 spring green target p

> color #14.9/a:2449,2065 spring green target p

> color #14.9/a:2449,2445 spring green target p

> color #14.9/a:2449,2446 spring green target p

> color #14.9/a:2449,2501 spring green target p

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J62_c9.png height 600
> width 600 supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!21.1 models

> volume #21.1 level 0.250000

> show #!22.1 models

> hide #22.1

> color #22.1/a:2249-2252 sea green

> color #22.1/a:2058-2066 cornflower blue

> color #22.1/a:2445-2451 #FFDB66

> color #22.1/a:2499-2506 lawn green

> color #22.1/a:2449 hot pink target a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.1

> ~hbonds #22.1

> name to_show #22.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.1

> cartoon to_show

> transparency #22.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #22.1/a white target p

> color #22.1/a:2449,2251 spring green target p

> color #22.1/a:2449,2065 spring green target p

> color #22.1/a:2449,2445 spring green target p

> color #22.1/a:2449,2446 spring green target p

> color #22.1/a:2449,2501 spring green target p

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J111_ape_sharp.png
> height 600 width 600 supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> volume #21.2 level 0.250000

> show #!22.2 models

> hide #22.2

> color #22.2/a:2249-2252 sea green

> color #22.2/a:2058-2066 cornflower blue

> color #22.2/a:2445-2451 #FFDB66

> color #22.2/a:2499-2506 lawn green

> color #22.2/a:2449 hot pink target a

> color #22.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.2

> ~hbonds #22.2

> name to_show #22.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.2

> cartoon to_show

> transparency #22.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #22.2/a white target p

> color #22.2/a:2449,2251 spring green target p

> color #22.2/a:2449,2065 spring green target p

> color #22.2/a:2449,2445 spring green target p

> color #22.2/a:2449,2446 spring green target p

> color #22.2/a:2449,2501 spring green target p

> volume #21.2 color black transparency 0.8

> volume zone #21.2 nearAtoms #22.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J112_ap_sharp.png height
> 600 width 600 supersample 3

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> volume #21.3 level 0.250000

> show #!22.3 models

> hide #22.3

> color #22.3/a:2249-2252 sea green

> color #22.3/a:2058-2066 cornflower blue

> color #22.3/a:2445-2451 #FFDB66

> color #22.3/a:2499-2506 lawn green

> color #22.3/a:2449 hot pink target a

> color #22.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.3

> ~hbonds #22.3

> name to_show #22.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.3

> cartoon to_show

> transparency #22.3 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #22.3/a white target p

> color #22.3/a:2449,2251 spring green target p

> color #22.3/a:2449,2065 spring green target p

> color #22.3/a:2449,2445 spring green target p

> color #22.3/a:2449,2446 spring green target p

> color #22.3/a:2449,2501 spring green target p

> volume #21.3 color black transparency 0.8

> volume zone #21.3 nearAtoms #22.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J113_pe_sharp.png height
> 600 width 600 supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> volume #21.4 level 0.250000

> show #!22.4 models

> hide #22.4

> color #22.4/a:2249-2252 sea green

> color #22.4/a:2058-2066 cornflower blue

> color #22.4/a:2445-2451 #FFDB66

> color #22.4/a:2499-2506 lawn green

> color #22.4/a:2449 hot pink target a

> color #22.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.4

> ~hbonds #22.4

> name to_show #22.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.4

> cartoon to_show

> transparency #22.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #22.4/a white target p

> color #22.4/a:2449,2251 spring green target p

> color #22.4/a:2449,2065 spring green target p

> color #22.4/a:2449,2445 spring green target p

> color #22.4/a:2449,2446 spring green target p

> color #22.4/a:2449,2501 spring green target p

> volume #21.4 color black transparency 0.8

> volume zone #21.4 nearAtoms #22.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J124_e_sharp.png height
> 600 width 600 supersample 3

> hide #!21.4 models

> hide #!22.4 models

> show #!10.1 models

> volume #10.1 level 0.011000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #10.1 color black transparency 0.8

> volume zone #10.1 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_ape.png height 600
> width 600 supersample 3

> hide #!10.1 models

> hide #!14.3 models

> show #!10.2 models

> volume #10.2 level 0.011000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #10.2 color black transparency 0.8

> volume zone #10.2 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #10.2 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_pe.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.3 models

> show #!10.3 models

> volume #10.3 level 0.011000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #10.3 color black transparency 0.8

> volume zone #10.3 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.5 models

> ~show #14.5

> ~cartoon #14.5

> show #14.5/a:2449

> volume zone #10.3 nearAtoms (#14.10/a:2449 | #14.5/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_e.png height 600 width
> 600 supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.5 models

> show #!12.10 models

> volume #12.10 level 0.350000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.10 nearAtoms (#14.10/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J53_c0.png height 600
> width 600 supersample 3

> hide #!12.10 models

> hide #!14.10 models

> hide #!14.4 models

> show #!12.1 models

> volume #12.1 level 0.350000

> show #!14.1 models

> hide #14.1

> color #14.1/a:2249-2252 sea green

> color #14.1/a:2058-2066 cornflower blue

> color #14.1/a:2445-2451 #FFDB66

> color #14.1/a:2499-2506 lawn green

> color #14.1/a:2449 hot pink target a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.1

> ~hbonds #14.1

> name to_show #14.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.1

> cartoon to_show

> transparency #14.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #14.1/a white target p

> color #14.1/a:2449,2251 spring green target p

> color #14.1/a:2449,2065 spring green target p

> color #14.1/a:2449,2445 spring green target p

> color #14.1/a:2449,2446 spring green target p

> color #14.1/a:2449,2501 spring green target p

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J54_c1.png height 600
> width 600 supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> volume #12.2 level 0.350000

> show #!14.2 models

> hide #14.2

> color #14.2/a:2249-2252 sea green

> color #14.2/a:2058-2066 cornflower blue

> color #14.2/a:2445-2451 #FFDB66

> color #14.2/a:2499-2506 lawn green

> color #14.2/a:2449 hot pink target a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.2

> ~hbonds #14.2

> name to_show #14.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.2

> cartoon to_show

> transparency #14.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #14.2/a white target p

> color #14.2/a:2449,2251 spring green target p

> color #14.2/a:2449,2065 spring green target p

> color #14.2/a:2449,2445 spring green target p

> color #14.2/a:2449,2446 spring green target p

> color #14.2/a:2449,2501 spring green target p

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.2 nearAtoms (#14.2/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J55_c2.png height 600
> width 600 supersample 3

> hide #!12.2 models

> hide #!14.2 models

> hide #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.350000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J56_c3.png height 600
> width 600 supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> volume #12.4 level 0.350000

> show #!14.4 models

> hide #14.4

> color #14.4/a:2249-2252 sea green

> color #14.4/a:2058-2066 cornflower blue

> color #14.4/a:2445-2451 #FFDB66

> color #14.4/a:2499-2506 lawn green

> color #14.4/a:2449 hot pink target a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.4

> ~hbonds #14.4

> name to_show #14.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.4

> cartoon to_show

> transparency #14.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.4/a white target p

> color #14.4/a:2449,2251 spring green target p

> color #14.4/a:2449,2065 spring green target p

> color #14.4/a:2449,2445 spring green target p

> color #14.4/a:2449,2446 spring green target p

> color #14.4/a:2449,2501 spring green target p

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J57_c4.png height 600
> width 600 supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> volume #12.5 level 0.350000

> show #!14.5 models

> hide #14.5

> color #14.5/a:2249-2252 sea green

> color #14.5/a:2058-2066 cornflower blue

> color #14.5/a:2445-2451 #FFDB66

> color #14.5/a:2499-2506 lawn green

> color #14.5/a:2449 hot pink target a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.5

> ~hbonds #14.5

> name to_show #14.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.5

> cartoon to_show

> transparency #14.5 60 target c

> hbonds to_show & sidechain restrict both color white

20 hydrogen bonds found  

> color #14.5/a white target p

> color #14.5/a:2449,2251 spring green target p

> color #14.5/a:2449,2065 spring green target p

> color #14.5/a:2449,2445 spring green target p

> color #14.5/a:2449,2446 spring green target p

> color #14.5/a:2449,2501 spring green target p

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.5 nearAtoms (#14.5/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J58_c5.png height 600
> width 600 supersample 3

> hide #!12.5 models

> hide #!14.5 models

> hide #!14.3 models

> show #!12.6 models

> volume #12.6 level 0.350000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.6 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J59_c6.png height 600
> width 600 supersample 3

> hide #!12.6 models

> hide #!14.6 models

> hide #!14.3 models

> show #!12.7 models

> volume #12.7 level 0.350000

> show #!14.7 models

> hide #14.7

> color #14.7/a:2249-2252 sea green

> color #14.7/a:2058-2066 cornflower blue

> color #14.7/a:2445-2451 #FFDB66

> color #14.7/a:2499-2506 lawn green

> color #14.7/a:2449 hot pink target a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.7

> ~hbonds #14.7

> name to_show #14.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.7

> cartoon to_show

> transparency #14.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.7/a white target p

> color #14.7/a:2449,2251 spring green target p

> color #14.7/a:2449,2065 spring green target p

> color #14.7/a:2449,2445 spring green target p

> color #14.7/a:2449,2446 spring green target p

> color #14.7/a:2449,2501 spring green target p

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.7 nearAtoms (#14.7/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J60_c7.png height 600
> width 600 supersample 3

> hide #!12.7 models

> hide #!14.7 models

> hide #!14.4 models

> show #!12.8 models

> volume #12.8 level 0.350000

> show #!14.8 models

> hide #14.8

> color #14.8/a:2249-2252 sea green

> color #14.8/a:2058-2066 cornflower blue

> color #14.8/a:2445-2451 #FFDB66

> color #14.8/a:2499-2506 lawn green

> color #14.8/a:2449 hot pink target a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.8

> ~hbonds #14.8

> name to_show #14.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.8

> cartoon to_show

> transparency #14.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.8/a white target p

> color #14.8/a:2449,2251 spring green target p

> color #14.8/a:2449,2065 spring green target p

> color #14.8/a:2449,2445 spring green target p

> color #14.8/a:2449,2446 spring green target p

> color #14.8/a:2449,2501 spring green target p

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J61_c8.png height 600
> width 600 supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> volume #12.9 level 0.350000

> show #!14.9 models

> hide #14.9

> color #14.9/a:2249-2252 sea green

> color #14.9/a:2058-2066 cornflower blue

> color #14.9/a:2445-2451 #FFDB66

> color #14.9/a:2499-2506 lawn green

> color #14.9/a:2449 hot pink target a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.9

> ~hbonds #14.9

> name to_show #14.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.9

> cartoon to_show

> transparency #14.9 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.9/a white target p

> color #14.9/a:2449,2251 spring green target p

> color #14.9/a:2449,2065 spring green target p

> color #14.9/a:2449,2445 spring green target p

> color #14.9/a:2449,2446 spring green target p

> color #14.9/a:2449,2501 spring green target p

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J62_c9.png height 600
> width 600 supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!21.1 models

> volume #21.1 level 0.250000

> show #!22.1 models

> hide #22.1

> color #22.1/a:2249-2252 sea green

> color #22.1/a:2058-2066 cornflower blue

> color #22.1/a:2445-2451 #FFDB66

> color #22.1/a:2499-2506 lawn green

> color #22.1/a:2449 hot pink target a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.1

> ~hbonds #22.1

> name to_show #22.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.1

> cartoon to_show

> transparency #22.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #22.1/a white target p

> color #22.1/a:2449,2251 spring green target p

> color #22.1/a:2449,2065 spring green target p

> color #22.1/a:2449,2445 spring green target p

> color #22.1/a:2449,2446 spring green target p

> color #22.1/a:2449,2501 spring green target p

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J111_ape_sharp.png
> height 600 width 600 supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!23.10 models

> volume #23.10 level 0.080000

> show #!25.10 models

> hide #25.10

> color #25.10/a:2249-2252 sea green

> color #25.10/a:2058-2066 cornflower blue

> color #25.10/a:2445-2451 #FFDB66

> color #25.10/a:2499-2506 lawn green

> color #25.10/a:2449 hot pink target a

> color #25.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #25.10

> ~hbonds #25.10

> name to_show #25.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.10

> cartoon to_show

> transparency #25.10 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.10/a white target p

> color #25.10/a:2449,2251 spring green target p

> color #25.10/a:2449,2065 spring green target p

> color #25.10/a:2449,2445 spring green target p

> color #25.10/a:2449,2446 spring green target p

> color #25.10/a:2449,2501 spring green target p

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J239_c0.png height 600
> width 600 supersample 3

> hide #!23.10 models

> hide #!25.10 models

> show #!23.1 models

> volume #23.1 level 0.080000

> show #!25.1 models

> hide #25.1

> color #25.1/a:2249-2252 sea green

> color #25.1/a:2058-2066 cornflower blue

> color #25.1/a:2445-2451 #FFDB66

> color #25.1/a:2499-2506 lawn green

> color #25.1/a:2449 hot pink target a

> color #25.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.1

> ~hbonds #25.1

> name to_show #25.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.1

> cartoon to_show

> transparency #25.1 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.1/a white target p

> color #25.1/a:2449,2251 spring green target p

> color #25.1/a:2449,2065 spring green target p

> color #25.1/a:2449,2445 spring green target p

> color #25.1/a:2449,2446 spring green target p

> color #25.1/a:2449,2501 spring green target p

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J240_c1.png height 600
> width 600 supersample 3

> hide #!23.1 models

> hide #!25.1 models

> show #!23.2 models

> volume #23.2 level 0.080000

> show #!25.2 models

> hide #25.2

> color #25.2/a:2249-2252 sea green

> color #25.2/a:2058-2066 cornflower blue

> color #25.2/a:2445-2451 #FFDB66

> color #25.2/a:2499-2506 lawn green

> color #25.2/a:2449 hot pink target a

> color #25.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.2

> ~hbonds #25.2

> name to_show #25.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.2

> cartoon to_show

> transparency #25.2 60 target c

> hbonds to_show & sidechain restrict both color white

19 hydrogen bonds found  

> color #25.2/a white target p

> color #25.2/a:2449,2251 spring green target p

> color #25.2/a:2449,2065 spring green target p

> color #25.2/a:2449,2445 spring green target p

> color #25.2/a:2449,2446 spring green target p

> color #25.2/a:2449,2501 spring green target p

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J241_c2.png height 600
> width 600 supersample 3

> hide #!23.2 models

> hide #!25.2 models

> show #!23.3 models

> volume #23.3 level 0.080000

> show #!25.3 models

> hide #25.3

> color #25.3/a:2249-2252 sea green

> color #25.3/a:2058-2066 cornflower blue

> color #25.3/a:2445-2451 #FFDB66

> color #25.3/a:2499-2506 lawn green

> color #25.3/a:2449 hot pink target a

> color #25.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.3

> ~hbonds #25.3

> name to_show #25.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.3

> cartoon to_show

> transparency #25.3 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.3/a white target p

> color #25.3/a:2449,2251 spring green target p

> color #25.3/a:2449,2065 spring green target p

> color #25.3/a:2449,2445 spring green target p

> color #25.3/a:2449,2446 spring green target p

> color #25.3/a:2449,2501 spring green target p

> volume #23.3 color black transparency 0.8

> volume zone #23.3 nearAtoms #25.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J242_c3.png height 600
> width 600 supersample 3

> hide #!23.3 models

> hide #!25.3 models

> show #!23.4 models

> volume #23.4 level 0.080000

> show #!25.4 models

> hide #25.4

> color #25.4/a:2249-2252 sea green

> color #25.4/a:2058-2066 cornflower blue

> color #25.4/a:2445-2451 #FFDB66

> color #25.4/a:2499-2506 lawn green

> color #25.4/a:2449 hot pink target a

> color #25.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.4

> ~hbonds #25.4

> name to_show #25.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.4

> cartoon to_show

> transparency #25.4 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.4/a white target p

> color #25.4/a:2449,2251 spring green target p

> color #25.4/a:2449,2065 spring green target p

> color #25.4/a:2449,2445 spring green target p

> color #25.4/a:2449,2446 spring green target p

> color #25.4/a:2449,2501 spring green target p

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J243_c4.png height 600
> width 600 supersample 3

> hide #!23.4 models

> hide #!25.4 models

> show #!23.5 models

> volume #23.5 level 0.080000

> show #!25.5 models

> hide #25.5

> color #25.5/a:2249-2252 sea green

> color #25.5/a:2058-2066 cornflower blue

> color #25.5/a:2445-2451 #FFDB66

> color #25.5/a:2499-2506 lawn green

> color #25.5/a:2449 hot pink target a

> color #25.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.5

> ~hbonds #25.5

> name to_show #25.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.5

> cartoon to_show

> transparency #25.5 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.5/a white target p

> color #25.5/a:2449,2251 spring green target p

> color #25.5/a:2449,2065 spring green target p

> color #25.5/a:2449,2445 spring green target p

> color #25.5/a:2449,2446 spring green target p

> color #25.5/a:2449,2501 spring green target p

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J244_c5.png height 600
> width 600 supersample 3

> hide #!23.5 models

> hide #!25.5 models

> show #!23.6 models

> volume #23.6 level 0.080000

> show #!25.6 models

> hide #25.6

> color #25.6/a:2249-2252 sea green

> color #25.6/a:2058-2066 cornflower blue

> color #25.6/a:2445-2451 #FFDB66

> color #25.6/a:2499-2506 lawn green

> color #25.6/a:2449 hot pink target a

> color #25.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.6

> ~hbonds #25.6

> name to_show #25.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.6

> cartoon to_show

> transparency #25.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #25.6/a white target p

> color #25.6/a:2449,2251 spring green target p

> color #25.6/a:2449,2065 spring green target p

> color #25.6/a:2449,2445 spring green target p

> color #25.6/a:2449,2446 spring green target p

> color #25.6/a:2449,2501 spring green target p

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J245_c6.png height 600
> width 600 supersample 3

> hide #!23.6 models

> hide #!25.6 models

> show #!23.7 models

> volume #23.7 level 0.080000

> show #!25.7 models

> hide #25.7

> color #25.7/a:2249-2252 sea green

> color #25.7/a:2058-2066 cornflower blue

> color #25.7/a:2445-2451 #FFDB66

> color #25.7/a:2499-2506 lawn green

> color #25.7/a:2449 hot pink target a

> color #25.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.7

> ~hbonds #25.7

> name to_show #25.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.7

> cartoon to_show

> transparency #25.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.7/a white target p

> color #25.7/a:2449,2251 spring green target p

> color #25.7/a:2449,2065 spring green target p

> color #25.7/a:2449,2445 spring green target p

> color #25.7/a:2449,2446 spring green target p

> color #25.7/a:2449,2501 spring green target p

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J246_c7.png height 600
> width 600 supersample 3

> hide #!23.7 models

> hide #!25.7 models

> show #!23.8 models

> volume #23.8 level 0.080000

> show #!25.8 models

> hide #25.8

> color #25.8/a:2249-2252 sea green

> color #25.8/a:2058-2066 cornflower blue

> color #25.8/a:2445-2451 #FFDB66

> color #25.8/a:2499-2506 lawn green

> color #25.8/a:2449 hot pink target a

> color #25.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.8

> ~hbonds #25.8

> name to_show #25.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.8

> cartoon to_show

> transparency #25.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.8/a white target p

> color #25.8/a:2449,2251 spring green target p

> color #25.8/a:2449,2065 spring green target p

> color #25.8/a:2449,2445 spring green target p

> color #25.8/a:2449,2446 spring green target p

> color #25.8/a:2449,2501 spring green target p

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J247_c8.png height 600
> width 600 supersample 3

> hide #!23.8 models

> hide #!25.8 models

> show #!23.9 models

> volume #23.9 level 0.080000

> show #!25.9 models

> hide #25.9

> color #25.9/a:2249-2252 sea green

> color #25.9/a:2058-2066 cornflower blue

> color #25.9/a:2445-2451 #FFDB66

> color #25.9/a:2499-2506 lawn green

> color #25.9/a:2449 hot pink target a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.9

> ~hbonds #25.9

> name to_show #25.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.9

> cartoon to_show

> transparency #25.9 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #25.9/a white target p

> color #25.9/a:2449,2251 spring green target p

> color #25.9/a:2449,2065 spring green target p

> color #25.9/a:2449,2445 spring green target p

> color #25.9/a:2449,2446 spring green target p

> color #25.9/a:2449,2501 spring green target p

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J248_c9.png height 600
> width 600 supersample 3

> hide #!23.9 models

> hide #!25.9 models

> show #!23.9 models

> volume #23.9 level 0.080000

> show #!25.9 models

> hide #25.9

> color #25.9/a:2249-2252 sea green

> color #25.9/a:2058-2066 cornflower blue

> color #25.9/a:2445-2451 #FFDB66

> color #25.9/a:2499-2506 lawn green

> color #25.9/a:2449 hot pink target a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.9

> ~hbonds #25.9

> name to_show #25.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.9

> cartoon to_show

> transparency #25.9 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #25.9/a white target p

> color #25.9/a:2449,2251 spring green target p

> color #25.9/a:2449,2065 spring green target p

> color #25.9/a:2449,2445 spring green target p

> color #25.9/a:2449,2446 spring green target p

> color #25.9/a:2449,2501 spring green target p

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2449 & sidechain range 2

> name to_show #25.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> cartoon suppressBackboneDisplay false

> show #!23.9 models

> volume #23.9 level 0.080000

> show #!25.9 models

> hide #25.9

> color #25.9/a:2249-2252 sea green

> color #25.9/a:2058-2066 cornflower blue

> color #25.9/a:2445-2451 #FFDB66

> color #25.9/a:2499-2506 lawn green

> color #25.9/a:2449 hot pink target a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.9

> ~hbonds #25.9

> name to_show #25.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.9

> cartoon to_show

> transparency #25.9 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #25.9/a white target p

> color #25.9/a:2449,2251 spring green target p

> color #25.9/a:2449,2065 spring green target p

> color #25.9/a:2449,2445 spring green target p

> color #25.9/a:2449,2446 spring green target p

> color #25.9/a:2449,2501 spring green target p

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J248_c9.png height 600
> width 600 supersample 3

> hide #!23.9 models

> hide #!25.9 models

> show #!10.1 models

> volume #10.1 level 0.011000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #10.1 color black transparency 0.8

> volume zone #10.1 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_ape.png height 600
> width 600 supersample 3

> hide #!10.1 models

> hide #!14.3 models

> show #!10.2 models

> volume #10.2 level 0.011000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #10.2 color black transparency 0.8

> volume zone #10.2 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #10.2 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_pe.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.3 models

> show #!10.3 models

> volume #10.3 level 0.011000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #10.3 color black transparency 0.8

> volume zone #10.3 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.5 models

> ~show #14.5

> ~cartoon #14.5

> show #14.5/a:2449

> volume zone #10.3 nearAtoms (#14.10/a:2449 | #14.5/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_e.png height 600 width
> 600 supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.5 models

> show #!12.10 models

> volume #12.10 level 0.350000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.10 nearAtoms (#14.10/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J53_c0.png height 600
> width 600 supersample 3

> hide #!12.10 models

> hide #!14.10 models

> hide #!14.4 models

> show #!12.1 models

> volume #12.1 level 0.350000

> show #!14.1 models

> hide #14.1

> color #14.1/a:2249-2252 sea green

> color #14.1/a:2058-2066 cornflower blue

> color #14.1/a:2445-2451 #FFDB66

> color #14.1/a:2499-2506 lawn green

> color #14.1/a:2449 hot pink target a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.1

> ~hbonds #14.1

> name to_show #14.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.1

> cartoon to_show

> transparency #14.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #14.1/a white target p

> color #14.1/a:2449,2251 spring green target p

> color #14.1/a:2449,2065 spring green target p

> color #14.1/a:2449,2445 spring green target p

> color #14.1/a:2449,2446 spring green target p

> color #14.1/a:2449,2501 spring green target p

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J54_c1.png height 600
> width 600 supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> volume #12.2 level 0.350000

> show #!14.2 models

> hide #14.2

> color #14.2/a:2249-2252 sea green

> color #14.2/a:2058-2066 cornflower blue

> color #14.2/a:2445-2451 #FFDB66

> color #14.2/a:2499-2506 lawn green

> color #14.2/a:2449 hot pink target a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.2

> ~hbonds #14.2

> name to_show #14.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.2

> cartoon to_show

> transparency #14.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #14.2/a white target p

> color #14.2/a:2449,2251 spring green target p

> color #14.2/a:2449,2065 spring green target p

> color #14.2/a:2449,2445 spring green target p

> color #14.2/a:2449,2446 spring green target p

> color #14.2/a:2449,2501 spring green target p

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.2 nearAtoms (#14.2/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J55_c2.png height 600
> width 600 supersample 3

> hide #!12.2 models

> hide #!14.2 models

> hide #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.350000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J56_c3.png height 600
> width 600 supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> volume #12.4 level 0.350000

> show #!14.4 models

> hide #14.4

> color #14.4/a:2249-2252 sea green

> color #14.4/a:2058-2066 cornflower blue

> color #14.4/a:2445-2451 #FFDB66

> color #14.4/a:2499-2506 lawn green

> color #14.4/a:2449 hot pink target a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.4

> ~hbonds #14.4

> name to_show #14.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.4

> cartoon to_show

> transparency #14.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.4/a white target p

> color #14.4/a:2449,2251 spring green target p

> color #14.4/a:2449,2065 spring green target p

> color #14.4/a:2449,2445 spring green target p

> color #14.4/a:2449,2446 spring green target p

> color #14.4/a:2449,2501 spring green target p

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J57_c4.png height 600
> width 600 supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> volume #12.5 level 0.350000

> show #!14.5 models

> hide #14.5

> color #14.5/a:2249-2252 sea green

> color #14.5/a:2058-2066 cornflower blue

> color #14.5/a:2445-2451 #FFDB66

> color #14.5/a:2499-2506 lawn green

> color #14.5/a:2449 hot pink target a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.5

> ~hbonds #14.5

> name to_show #14.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.5

> cartoon to_show

> transparency #14.5 60 target c

> hbonds to_show & sidechain restrict both color white

20 hydrogen bonds found  

> color #14.5/a white target p

> color #14.5/a:2449,2251 spring green target p

> color #14.5/a:2449,2065 spring green target p

> color #14.5/a:2449,2445 spring green target p

> color #14.5/a:2449,2446 spring green target p

> color #14.5/a:2449,2501 spring green target p

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.5 nearAtoms (#14.5/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J58_c5.png height 600
> width 600 supersample 3

> hide #!12.5 models

> hide #!14.5 models

> hide #!14.3 models

> show #!12.6 models

> volume #12.6 level 0.350000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.6 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J59_c6.png height 600
> width 600 supersample 3

> hide #!12.6 models

> hide #!14.6 models

> hide #!14.3 models

> show #!12.7 models

> volume #12.7 level 0.350000

> show #!14.7 models

> hide #14.7

> color #14.7/a:2249-2252 sea green

> color #14.7/a:2058-2066 cornflower blue

> color #14.7/a:2445-2451 #FFDB66

> color #14.7/a:2499-2506 lawn green

> color #14.7/a:2449 hot pink target a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.7

> ~hbonds #14.7

> name to_show #14.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.7

> cartoon to_show

> transparency #14.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.7/a white target p

> color #14.7/a:2449,2251 spring green target p

> color #14.7/a:2449,2065 spring green target p

> color #14.7/a:2449,2445 spring green target p

> color #14.7/a:2449,2446 spring green target p

> color #14.7/a:2449,2501 spring green target p

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.7 nearAtoms (#14.7/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J60_c7.png height 600
> width 600 supersample 3

> hide #!12.7 models

> hide #!14.7 models

> hide #!14.4 models

> show #!12.8 models

> volume #12.8 level 0.350000

> show #!14.8 models

> hide #14.8

> color #14.8/a:2249-2252 sea green

> color #14.8/a:2058-2066 cornflower blue

> color #14.8/a:2445-2451 #FFDB66

> color #14.8/a:2499-2506 lawn green

> color #14.8/a:2449 hot pink target a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.8

> ~hbonds #14.8

> name to_show #14.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.8

> cartoon to_show

> transparency #14.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.8/a white target p

> color #14.8/a:2449,2251 spring green target p

> color #14.8/a:2449,2065 spring green target p

> color #14.8/a:2449,2445 spring green target p

> color #14.8/a:2449,2446 spring green target p

> color #14.8/a:2449,2501 spring green target p

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J61_c8.png height 600
> width 600 supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> volume #12.9 level 0.350000

> show #!14.9 models

> hide #14.9

> color #14.9/a:2249-2252 sea green

> color #14.9/a:2058-2066 cornflower blue

> color #14.9/a:2445-2451 #FFDB66

> color #14.9/a:2499-2506 lawn green

> color #14.9/a:2449 hot pink target a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.9

> ~hbonds #14.9

> name to_show #14.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.9

> cartoon to_show

> transparency #14.9 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.9/a white target p

> color #14.9/a:2449,2251 spring green target p

> color #14.9/a:2449,2065 spring green target p

> color #14.9/a:2449,2445 spring green target p

> color #14.9/a:2449,2446 spring green target p

> color #14.9/a:2449,2501 spring green target p

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J62_c9.png height 600
> width 600 supersample 3

> hide #!12.9 models

> hide #!14.9 models

> cartoon tether opacity 0

> cartoon tether scale 0

> show #!10.1 models

> volume #10.1 level 0.011000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #10.1 color black transparency 0.8

> volume zone #10.1 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_ape.png height 600
> width 600 supersample 3

> hide #!10.1 models

> hide #!14.3 models

> show #!10.2 models

> volume #10.2 level 0.011000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #10.2 color black transparency 0.8

> volume zone #10.2 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #10.2 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_pe.png height 600 width
> 600 supersample 3

> hide #!10.2 models

> hide #!14.6 models

> hide #!14.3 models

> show #!10.3 models

> volume #10.3 level 0.011000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #10.3 color black transparency 0.8

> volume zone #10.3 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.5 models

> ~show #14.5

> ~cartoon #14.5

> show #14.5/a:2449

> volume zone #10.3 nearAtoms (#14.10/a:2449 | #14.5/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_e.png height 600 width
> 600 supersample 3

> hide #!10.3 models

> hide #!14.10 models

> hide #!14.5 models

> show #!12.10 models

> volume #12.10 level 0.350000

> show #!14.10 models

> hide #14.10

> color #14.10/a:2249-2252 sea green

> color #14.10/a:2058-2066 cornflower blue

> color #14.10/a:2445-2451 #FFDB66

> color #14.10/a:2499-2506 lawn green

> color #14.10/a:2449 hot pink target a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #14.10

> ~hbonds #14.10

> name to_show #14.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.10

> cartoon to_show

> transparency #14.10 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.10/a white target p

> color #14.10/a:2449,2251 spring green target p

> color #14.10/a:2449,2065 spring green target p

> color #14.10/a:2449,2445 spring green target p

> color #14.10/a:2449,2446 spring green target p

> color #14.10/a:2449,2501 spring green target p

> volume #12.10 color black transparency 0.8

> volume zone #12.10 nearAtoms #14.10/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.10 nearAtoms (#14.10/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J53_c0.png height 600
> width 600 supersample 3

> hide #!12.10 models

> hide #!14.10 models

> hide #!14.4 models

> show #!12.1 models

> volume #12.1 level 0.350000

> show #!14.1 models

> hide #14.1

> color #14.1/a:2249-2252 sea green

> color #14.1/a:2058-2066 cornflower blue

> color #14.1/a:2445-2451 #FFDB66

> color #14.1/a:2499-2506 lawn green

> color #14.1/a:2449 hot pink target a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.1

> ~hbonds #14.1

> name to_show #14.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.1

> cartoon to_show

> transparency #14.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #14.1/a white target p

> color #14.1/a:2449,2251 spring green target p

> color #14.1/a:2449,2065 spring green target p

> color #14.1/a:2449,2445 spring green target p

> color #14.1/a:2449,2446 spring green target p

> color #14.1/a:2449,2501 spring green target p

> volume #12.1 color black transparency 0.8

> volume zone #12.1 nearAtoms #14.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J54_c1.png height 600
> width 600 supersample 3

> hide #!12.1 models

> hide #!14.1 models

> show #!12.2 models

> volume #12.2 level 0.350000

> show #!14.2 models

> hide #14.2

> color #14.2/a:2249-2252 sea green

> color #14.2/a:2058-2066 cornflower blue

> color #14.2/a:2445-2451 #FFDB66

> color #14.2/a:2499-2506 lawn green

> color #14.2/a:2449 hot pink target a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.2

> ~hbonds #14.2

> name to_show #14.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.2

> cartoon to_show

> transparency #14.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #14.2/a white target p

> color #14.2/a:2449,2251 spring green target p

> color #14.2/a:2449,2065 spring green target p

> color #14.2/a:2449,2445 spring green target p

> color #14.2/a:2449,2446 spring green target p

> color #14.2/a:2449,2501 spring green target p

> volume #12.2 color black transparency 0.8

> volume zone #12.2 nearAtoms #14.2/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.2 nearAtoms (#14.2/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J55_c2.png height 600
> width 600 supersample 3

> hide #!12.2 models

> hide #!14.2 models

> hide #!14.3 models

> show #!12.3 models

> volume #12.3 level 0.350000

> show #!14.3 models

> hide #14.3

> color #14.3/a:2249-2252 sea green

> color #14.3/a:2058-2066 cornflower blue

> color #14.3/a:2445-2451 #FFDB66

> color #14.3/a:2499-2506 lawn green

> color #14.3/a:2449 hot pink target a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.3

> ~hbonds #14.3

> name to_show #14.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.3

> cartoon to_show

> transparency #14.3 60 target c

> hbonds to_show & sidechain restrict both color white

21 hydrogen bonds found  

> color #14.3/a white target p

> color #14.3/a:2449,2251 spring green target p

> color #14.3/a:2449,2065 spring green target p

> color #14.3/a:2449,2445 spring green target p

> color #14.3/a:2449,2446 spring green target p

> color #14.3/a:2449,2501 spring green target p

> volume #12.3 color black transparency 0.8

> volume zone #12.3 nearAtoms #14.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J56_c3.png height 600
> width 600 supersample 3

> hide #!12.3 models

> hide #!14.3 models

> show #!12.4 models

> volume #12.4 level 0.350000

> show #!14.4 models

> hide #14.4

> color #14.4/a:2249-2252 sea green

> color #14.4/a:2058-2066 cornflower blue

> color #14.4/a:2445-2451 #FFDB66

> color #14.4/a:2499-2506 lawn green

> color #14.4/a:2449 hot pink target a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.4

> ~hbonds #14.4

> name to_show #14.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.4

> cartoon to_show

> transparency #14.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #14.4/a white target p

> color #14.4/a:2449,2251 spring green target p

> color #14.4/a:2449,2065 spring green target p

> color #14.4/a:2449,2445 spring green target p

> color #14.4/a:2449,2446 spring green target p

> color #14.4/a:2449,2501 spring green target p

> volume #12.4 color black transparency 0.8

> volume zone #12.4 nearAtoms #14.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J57_c4.png height 600
> width 600 supersample 3

> hide #!12.4 models

> hide #!14.4 models

> show #!12.5 models

> volume #12.5 level 0.350000

> show #!14.5 models

> hide #14.5

> color #14.5/a:2249-2252 sea green

> color #14.5/a:2058-2066 cornflower blue

> color #14.5/a:2445-2451 #FFDB66

> color #14.5/a:2499-2506 lawn green

> color #14.5/a:2449 hot pink target a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.5

> ~hbonds #14.5

> name to_show #14.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.5

> cartoon to_show

> transparency #14.5 60 target c

> hbonds to_show & sidechain restrict both color white

20 hydrogen bonds found  

> color #14.5/a white target p

> color #14.5/a:2449,2251 spring green target p

> color #14.5/a:2449,2065 spring green target p

> color #14.5/a:2449,2445 spring green target p

> color #14.5/a:2449,2446 spring green target p

> color #14.5/a:2449,2501 spring green target p

> volume #12.5 color black transparency 0.8

> volume zone #12.5 nearAtoms #14.5/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.5 nearAtoms (#14.5/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J58_c5.png height 600
> width 600 supersample 3

> hide #!12.5 models

> hide #!14.5 models

> hide #!14.3 models

> show #!12.6 models

> volume #12.6 level 0.350000

> show #!14.6 models

> hide #14.6

> color #14.6/a:2249-2252 sea green

> color #14.6/a:2058-2066 cornflower blue

> color #14.6/a:2445-2451 #FFDB66

> color #14.6/a:2499-2506 lawn green

> color #14.6/a:2449 hot pink target a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.6

> ~hbonds #14.6

> name to_show #14.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.6

> cartoon to_show

> transparency #14.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.6/a white target p

> color #14.6/a:2449,2251 spring green target p

> color #14.6/a:2449,2065 spring green target p

> color #14.6/a:2449,2445 spring green target p

> color #14.6/a:2449,2446 spring green target p

> color #14.6/a:2449,2501 spring green target p

> volume #12.6 color black transparency 0.8

> volume zone #12.6 nearAtoms #14.6/a:2449 & sidechain range 2

> show #!14.3 models

> ~show #14.3

> ~cartoon #14.3

> show #14.3/a:2449

> volume zone #12.6 nearAtoms (#14.6/a:2449 | #14.3/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J59_c6.png height 600
> width 600 supersample 3

> hide #!12.6 models

> hide #!14.6 models

> hide #!14.3 models

> show #!12.7 models

> volume #12.7 level 0.350000

> show #!14.7 models

> hide #14.7

> color #14.7/a:2249-2252 sea green

> color #14.7/a:2058-2066 cornflower blue

> color #14.7/a:2445-2451 #FFDB66

> color #14.7/a:2499-2506 lawn green

> color #14.7/a:2449 hot pink target a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.7

> ~hbonds #14.7

> name to_show #14.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.7

> cartoon to_show

> transparency #14.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.7/a white target p

> color #14.7/a:2449,2251 spring green target p

> color #14.7/a:2449,2065 spring green target p

> color #14.7/a:2449,2445 spring green target p

> color #14.7/a:2449,2446 spring green target p

> color #14.7/a:2449,2501 spring green target p

> volume #12.7 color black transparency 0.8

> volume zone #12.7 nearAtoms #14.7/a:2449 & sidechain range 2

> show #!14.4 models

> ~show #14.4

> ~cartoon #14.4

> show #14.4/a:2449

> volume zone #12.7 nearAtoms (#14.7/a:2449 | #14.4/a:2449 ) & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J60_c7.png height 600
> width 600 supersample 3

> hide #!12.7 models

> hide #!14.7 models

> hide #!14.4 models

> show #!12.8 models

> volume #12.8 level 0.350000

> show #!14.8 models

> hide #14.8

> color #14.8/a:2249-2252 sea green

> color #14.8/a:2058-2066 cornflower blue

> color #14.8/a:2445-2451 #FFDB66

> color #14.8/a:2499-2506 lawn green

> color #14.8/a:2449 hot pink target a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.8

> ~hbonds #14.8

> name to_show #14.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.8

> cartoon to_show

> transparency #14.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #14.8/a white target p

> color #14.8/a:2449,2251 spring green target p

> color #14.8/a:2449,2065 spring green target p

> color #14.8/a:2449,2445 spring green target p

> color #14.8/a:2449,2446 spring green target p

> color #14.8/a:2449,2501 spring green target p

> volume #12.8 color black transparency 0.8

> volume zone #12.8 nearAtoms #14.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J61_c8.png height 600
> width 600 supersample 3

> hide #!12.8 models

> hide #!14.8 models

> show #!12.9 models

> volume #12.9 level 0.350000

> show #!14.9 models

> hide #14.9

> color #14.9/a:2249-2252 sea green

> color #14.9/a:2058-2066 cornflower blue

> color #14.9/a:2445-2451 #FFDB66

> color #14.9/a:2499-2506 lawn green

> color #14.9/a:2449 hot pink target a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #14.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #14.9

> ~hbonds #14.9

> name to_show #14.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #14.9

> cartoon to_show

> transparency #14.9 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #14.9/a white target p

> color #14.9/a:2449,2251 spring green target p

> color #14.9/a:2449,2065 spring green target p

> color #14.9/a:2449,2445 spring green target p

> color #14.9/a:2449,2446 spring green target p

> color #14.9/a:2449,2501 spring green target p

> volume #12.9 color black transparency 0.8

> volume zone #12.9 nearAtoms #14.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_d10_J62_c9.png height 600
> width 600 supersample 3

> hide #!12.9 models

> hide #!14.9 models

> show #!21.1 models

> volume #21.1 level 0.250000

> show #!22.1 models

> hide #22.1

> color #22.1/a:2249-2252 sea green

> color #22.1/a:2058-2066 cornflower blue

> color #22.1/a:2445-2451 #FFDB66

> color #22.1/a:2499-2506 lawn green

> color #22.1/a:2449 hot pink target a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.1

> ~hbonds #22.1

> name to_show #22.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.1

> cartoon to_show

> transparency #22.1 60 target c

> hbonds to_show & sidechain restrict both color white

23 hydrogen bonds found  

> color #22.1/a white target p

> color #22.1/a:2449,2251 spring green target p

> color #22.1/a:2449,2065 spring green target p

> color #22.1/a:2449,2445 spring green target p

> color #22.1/a:2449,2446 spring green target p

> color #22.1/a:2449,2501 spring green target p

> volume #21.1 color black transparency 0.8

> volume zone #21.1 nearAtoms #22.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J111_ape_sharp.png
> height 600 width 600 supersample 3

> hide #!21.1 models

> hide #!22.1 models

> show #!21.2 models

> volume #21.2 level 0.250000

> show #!22.2 models

> hide #22.2

> color #22.2/a:2249-2252 sea green

> color #22.2/a:2058-2066 cornflower blue

> color #22.2/a:2445-2451 #FFDB66

> color #22.2/a:2499-2506 lawn green

> color #22.2/a:2449 hot pink target a

> color #22.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.2

> ~hbonds #22.2

> name to_show #22.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.2

> cartoon to_show

> transparency #22.2 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #22.2/a white target p

> color #22.2/a:2449,2251 spring green target p

> color #22.2/a:2449,2065 spring green target p

> color #22.2/a:2449,2445 spring green target p

> color #22.2/a:2449,2446 spring green target p

> color #22.2/a:2449,2501 spring green target p

> volume #21.2 color black transparency 0.8

> volume zone #21.2 nearAtoms #22.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J112_ap_sharp.png height
> 600 width 600 supersample 3

> hide #!21.2 models

> hide #!22.2 models

> show #!21.3 models

> volume #21.3 level 0.250000

> show #!22.3 models

> hide #22.3

> color #22.3/a:2249-2252 sea green

> color #22.3/a:2058-2066 cornflower blue

> color #22.3/a:2445-2451 #FFDB66

> color #22.3/a:2499-2506 lawn green

> color #22.3/a:2449 hot pink target a

> color #22.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.3

> ~hbonds #22.3

> name to_show #22.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.3

> cartoon to_show

> transparency #22.3 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #22.3/a white target p

> color #22.3/a:2449,2251 spring green target p

> color #22.3/a:2449,2065 spring green target p

> color #22.3/a:2449,2445 spring green target p

> color #22.3/a:2449,2446 spring green target p

> color #22.3/a:2449,2501 spring green target p

> volume #21.3 color black transparency 0.8

> volume zone #21.3 nearAtoms #22.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J113_pe_sharp.png height
> 600 width 600 supersample 3

> hide #!21.3 models

> hide #!22.3 models

> show #!21.4 models

> volume #21.4 level 0.250000

> show #!22.4 models

> hide #22.4

> color #22.4/a:2249-2252 sea green

> color #22.4/a:2058-2066 cornflower blue

> color #22.4/a:2445-2451 #FFDB66

> color #22.4/a:2499-2506 lawn green

> color #22.4/a:2449 hot pink target a

> color #22.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #22.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #22.4

> ~hbonds #22.4

> name to_show #22.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #22.4

> cartoon to_show

> transparency #22.4 60 target c

> hbonds to_show & sidechain restrict both color white

22 hydrogen bonds found  

> color #22.4/a white target p

> color #22.4/a:2449,2251 spring green target p

> color #22.4/a:2449,2065 spring green target p

> color #22.4/a:2449,2445 spring green target p

> color #22.4/a:2449,2446 spring green target p

> color #22.4/a:2449,2501 spring green target p

> volume #21.4 color black transparency 0.8

> volume zone #21.4 nearAtoms #22.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J124_e_sharp.png height
> 600 width 600 supersample 3

> hide #!21.4 models

> hide #!22.4 models

> show #!23.10 models

> volume #23.10 level 0.080000

> show #!25.10 models

> hide #25.10

> color #25.10/a:2249-2252 sea green

> color #25.10/a:2058-2066 cornflower blue

> color #25.10/a:2445-2451 #FFDB66

> color #25.10/a:2499-2506 lawn green

> color #25.10/a:2449 hot pink target a

> color #25.10/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.10/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target
> a

> ~show #25.10

> ~hbonds #25.10

> name to_show #25.10/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.10

> cartoon to_show

> transparency #25.10 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.10/a white target p

> color #25.10/a:2449,2251 spring green target p

> color #25.10/a:2449,2065 spring green target p

> color #25.10/a:2449,2445 spring green target p

> color #25.10/a:2449,2446 spring green target p

> color #25.10/a:2449,2501 spring green target p

> volume #23.10 color black transparency 0.8

> volume zone #23.10 nearAtoms #25.10/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J239_c0.png height 600
> width 600 supersample 3

> hide #!23.10 models

> hide #!25.10 models

> show #!23.1 models

> volume #23.1 level 0.080000

> show #!25.1 models

> hide #25.1

> color #25.1/a:2249-2252 sea green

> color #25.1/a:2058-2066 cornflower blue

> color #25.1/a:2445-2451 #FFDB66

> color #25.1/a:2499-2506 lawn green

> color #25.1/a:2449 hot pink target a

> color #25.1/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.1/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.1

> ~hbonds #25.1

> name to_show #25.1/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.1

> cartoon to_show

> transparency #25.1 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.1/a white target p

> color #25.1/a:2449,2251 spring green target p

> color #25.1/a:2449,2065 spring green target p

> color #25.1/a:2449,2445 spring green target p

> color #25.1/a:2449,2446 spring green target p

> color #25.1/a:2449,2501 spring green target p

> volume #23.1 color black transparency 0.8

> volume zone #23.1 nearAtoms #25.1/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J240_c1.png height 600
> width 600 supersample 3

> hide #!23.1 models

> hide #!25.1 models

> show #!23.2 models

> volume #23.2 level 0.080000

> show #!25.2 models

> hide #25.2

> color #25.2/a:2249-2252 sea green

> color #25.2/a:2058-2066 cornflower blue

> color #25.2/a:2445-2451 #FFDB66

> color #25.2/a:2499-2506 lawn green

> color #25.2/a:2449 hot pink target a

> color #25.2/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.2/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.2

> ~hbonds #25.2

> name to_show #25.2/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.2

> cartoon to_show

> transparency #25.2 60 target c

> hbonds to_show & sidechain restrict both color white

19 hydrogen bonds found  

> color #25.2/a white target p

> color #25.2/a:2449,2251 spring green target p

> color #25.2/a:2449,2065 spring green target p

> color #25.2/a:2449,2445 spring green target p

> color #25.2/a:2449,2446 spring green target p

> color #25.2/a:2449,2501 spring green target p

> volume #23.2 color black transparency 0.8

> volume zone #23.2 nearAtoms #25.2/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J241_c2.png height 600
> width 600 supersample 3

> hide #!23.2 models

> hide #!25.2 models

> show #!23.3 models

> volume #23.3 level 0.080000

> show #!25.3 models

> hide #25.3

> color #25.3/a:2249-2252 sea green

> color #25.3/a:2058-2066 cornflower blue

> color #25.3/a:2445-2451 #FFDB66

> color #25.3/a:2499-2506 lawn green

> color #25.3/a:2449 hot pink target a

> color #25.3/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.3/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.3

> ~hbonds #25.3

> name to_show #25.3/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.3

> cartoon to_show

> transparency #25.3 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.3/a white target p

> color #25.3/a:2449,2251 spring green target p

> color #25.3/a:2449,2065 spring green target p

> color #25.3/a:2449,2445 spring green target p

> color #25.3/a:2449,2446 spring green target p

> color #25.3/a:2449,2501 spring green target p

> volume #23.3 color black transparency 0.8

> volume zone #23.3 nearAtoms #25.3/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J242_c3.png height 600
> width 600 supersample 3

> hide #!23.3 models

> hide #!25.3 models

> show #!23.4 models

> volume #23.4 level 0.080000

> show #!25.4 models

> hide #25.4

> color #25.4/a:2249-2252 sea green

> color #25.4/a:2058-2066 cornflower blue

> color #25.4/a:2445-2451 #FFDB66

> color #25.4/a:2499-2506 lawn green

> color #25.4/a:2449 hot pink target a

> color #25.4/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.4/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.4

> ~hbonds #25.4

> name to_show #25.4/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.4

> cartoon to_show

> transparency #25.4 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.4/a white target p

> color #25.4/a:2449,2251 spring green target p

> color #25.4/a:2449,2065 spring green target p

> color #25.4/a:2449,2445 spring green target p

> color #25.4/a:2449,2446 spring green target p

> color #25.4/a:2449,2501 spring green target p

> volume #23.4 color black transparency 0.8

> volume zone #23.4 nearAtoms #25.4/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J243_c4.png height 600
> width 600 supersample 3

> hide #!23.4 models

> hide #!25.4 models

> show #!23.5 models

> volume #23.5 level 0.080000

> show #!25.5 models

> hide #25.5

> color #25.5/a:2249-2252 sea green

> color #25.5/a:2058-2066 cornflower blue

> color #25.5/a:2445-2451 #FFDB66

> color #25.5/a:2499-2506 lawn green

> color #25.5/a:2449 hot pink target a

> color #25.5/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.5/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.5

> ~hbonds #25.5

> name to_show #25.5/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.5

> cartoon to_show

> transparency #25.5 60 target c

> hbonds to_show & sidechain restrict both color white

26 hydrogen bonds found  

> color #25.5/a white target p

> color #25.5/a:2449,2251 spring green target p

> color #25.5/a:2449,2065 spring green target p

> color #25.5/a:2449,2445 spring green target p

> color #25.5/a:2449,2446 spring green target p

> color #25.5/a:2449,2501 spring green target p

> volume #23.5 color black transparency 0.8

> volume zone #23.5 nearAtoms #25.5/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J244_c5.png height 600
> width 600 supersample 3

> hide #!23.5 models

> hide #!25.5 models

> show #!23.6 models

> volume #23.6 level 0.080000

> show #!25.6 models

> hide #25.6

> color #25.6/a:2249-2252 sea green

> color #25.6/a:2058-2066 cornflower blue

> color #25.6/a:2445-2451 #FFDB66

> color #25.6/a:2499-2506 lawn green

> color #25.6/a:2449 hot pink target a

> color #25.6/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.6/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.6

> ~hbonds #25.6

> name to_show #25.6/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.6

> cartoon to_show

> transparency #25.6 60 target c

> hbonds to_show & sidechain restrict both color white

27 hydrogen bonds found  

> color #25.6/a white target p

> color #25.6/a:2449,2251 spring green target p

> color #25.6/a:2449,2065 spring green target p

> color #25.6/a:2449,2445 spring green target p

> color #25.6/a:2449,2446 spring green target p

> color #25.6/a:2449,2501 spring green target p

> volume #23.6 color black transparency 0.8

> volume zone #23.6 nearAtoms #25.6/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J245_c6.png height 600
> width 600 supersample 3

> hide #!23.6 models

> hide #!25.6 models

> show #!23.7 models

> volume #23.7 level 0.080000

> show #!25.7 models

> hide #25.7

> color #25.7/a:2249-2252 sea green

> color #25.7/a:2058-2066 cornflower blue

> color #25.7/a:2445-2451 #FFDB66

> color #25.7/a:2499-2506 lawn green

> color #25.7/a:2449 hot pink target a

> color #25.7/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.7/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.7

> ~hbonds #25.7

> name to_show #25.7/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.7

> cartoon to_show

> transparency #25.7 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.7/a white target p

> color #25.7/a:2449,2251 spring green target p

> color #25.7/a:2449,2065 spring green target p

> color #25.7/a:2449,2445 spring green target p

> color #25.7/a:2449,2446 spring green target p

> color #25.7/a:2449,2501 spring green target p

> volume #23.7 color black transparency 0.8

> volume zone #23.7 nearAtoms #25.7/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J246_c7.png height 600
> width 600 supersample 3

> hide #!23.7 models

> hide #!25.7 models

> show #!23.8 models

> volume #23.8 level 0.080000

> show #!25.8 models

> hide #25.8

> color #25.8/a:2249-2252 sea green

> color #25.8/a:2058-2066 cornflower blue

> color #25.8/a:2445-2451 #FFDB66

> color #25.8/a:2499-2506 lawn green

> color #25.8/a:2449 hot pink target a

> color #25.8/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.8/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.8

> ~hbonds #25.8

> name to_show #25.8/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.8

> cartoon to_show

> transparency #25.8 60 target c

> hbonds to_show & sidechain restrict both color white

24 hydrogen bonds found  

> color #25.8/a white target p

> color #25.8/a:2449,2251 spring green target p

> color #25.8/a:2449,2065 spring green target p

> color #25.8/a:2449,2445 spring green target p

> color #25.8/a:2449,2446 spring green target p

> color #25.8/a:2449,2501 spring green target p

> volume #23.8 color black transparency 0.8

> volume zone #23.8 nearAtoms #25.8/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J247_c8.png height 600
> width 600 supersample 3

> hide #!23.8 models

> hide #!25.8 models

> show #!23.9 models

> volume #23.9 level 0.080000

> show #!25.9 models

> hide #25.9

> color #25.9/a:2249-2252 sea green

> color #25.9/a:2058-2066 cornflower blue

> color #25.9/a:2445-2451 #FFDB66

> color #25.9/a:2499-2506 lawn green

> color #25.9/a:2449 hot pink target a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@N* & sidechain blue target
> a

> color #25.9/a:2449,2251,2065,2445,2446,2447,2501@O* & sidechain red target a

> ~show #25.9

> ~hbonds #25.9

> name to_show #25.9/a:2058-2065,2250-2252,2445-2451,2499-2506

> show to_show

> ~cartoon #25.9

> cartoon to_show

> transparency #25.9 60 target c

> hbonds to_show & sidechain restrict both color white

25 hydrogen bonds found  

> color #25.9/a white target p

> color #25.9/a:2449,2251 spring green target p

> color #25.9/a:2449,2065 spring green target p

> color #25.9/a:2449,2445 spring green target p

> color #25.9/a:2449,2446 spring green target p

> color #25.9/a:2449,2501 spring green target p

> volume #23.9 color black transparency 0.8

> volume zone #23.9 nearAtoms #25.9/a:2449 & sidechain range 2

> save /Users/dalar193/Desktop/D2449_new/D2449_new_dE_J248_c9.png height 600
> width 600 supersample 3

> hide #!23.9 models

> hide #!25.9 models

> show #!1.1 models

> show #!1.2 models

> save /Users/dalar193/wd/deltaRibosomes/figure_D2449_new.cxs

——— End of log from Sun Aug 17 22:37:00 2025 ———

opened ChimeraX session  

> hide #!1.1 models

> windowsize 650 900

> windowsize 60 900

> windowsize 650 900

> windowsize 650 850

> windowsize 650 800

> windowsize 650 950

> windowsize 650 900

[Repeated 1 time(s)]

> windowsize 650 880

> windowsize 650 900

> windowsize 580 800

> view matrix camera
> -0.61221,0.59688,0.51859,162.88,-0.42191,0.3081,-0.85268,141.46,-0.66872,-0.74083,0.063202,142.95

> hide #1.2

> ~cartoon #1.2

> cartoon #1.2/a:2449-2463,2487-2501

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.2 dark slate gray

> color #1.2/a:2491 & sidechain teal target a

> color #1.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #1.2/a:2451 & sidechain green yellow target a

> hbonds #1.2/a:2491 restrict #1.2& #1.2/a:2491 :< 4 color dark orange

4 hydrogen bonds found  

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> color #1.2/v medium aquamarine

> hide #1.2/a:MG,HOH

> show #1.2/a:6231,8885,6996,8460

> color #1.2/a:MG tomato

> color #1.2/a:HOH royal blue

> pbond #1.2/a:2452@OP1 #1.2/a:6231 color dark orange

> pbond #1.2/a:6231 #1.2/a:8885 color dark orange

> pbond #1.2/a:8885 #1.2/a:2493@OP1 color dark orange

> pbond #1.2/a:8885 #1.2/a:2494@OP2 color dark orange

> pbond #1.2/a:2494@OP1 #1.2/v:3@N color dark orange

> ~clip

> clip near 34.284 far 62.067

> clip list

Using 2 clip planes:  
near offset -19.424, axis -0.519,0.853,-0.063, point 139.7,173.6,141.9)  
far offset 12.221, axis 0.519,-0.853,0.063, point 123.3,200.6,139.9)  

> hide #!1.6 models

> show #!1.6 models

> hide #!1.6 models

> show #!1.6 models

> hide #!1.6 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> hide #!1.1 models

> show #!1.1 models

> select ~sel & ##selected

Nothing selected  

> volume zone #1.1 nearAtoms #1.2/a:2491

> volume zone #1.1 nearAtoms #1.2/a:2491 range 2

> volume zone #1.1 nearAtoms #1.2/a:2491 range 1.9

> volume zone #1.1 nearAtoms #1.2/a:2491 & sidechain range 1

> volume zone #1.1 nearAtoms #1.2/a:2491 & sideonly range 1

> volume zone #1.1 nearAtoms #1.2/a:2491 & sideonly range 2

> volume zone #1.1 nearAtoms #1.2/a:2491 & sidechain range 2

> open /Users/dalar193/wd/deltaRibosomes/modelling/references/5mdz.cif id 1.16

5mdz.cif title:  
Structure of the 70S ribosome (empty A site) [more info...]  
  
Chain information for 5mdz.cif #8  
---  
Chain | Description | UniProt  
1 | 23S ribosomal RNA |   
2 | 16S ribosomal RNA |   
3 | 5S ribosomal RNA |   
4 | mRNA |   
5 | fMet-NH-tRNA(fMet) |   
B | 50S ribosomal protein L2 | RL2_ECOLI 1-273  
C | 50S ribosomal protein L3 | RL3_ECOLI 1-209  
D | 50S ribosomal protein L4 | RL4_ECOLI 1-201  
E | 50S ribosomal protein L5 | RL5_ECOLI 1-179  
F | 50S ribosomal protein L6 | RL6_ECOLI 1-177  
G | 50S ribosomal protein L9 | RL9_ECOLI 1-149  
H | 50S ribosomal protein L10 | RL10_ECOLI 1-165  
I | 50S ribosomal protein L11 | RL11_ECOLI 0-141  
J | 50S ribosomal protein L13 | RL13_ECOLI 1-142  
K | 50S ribosomal protein L14 | RL14_ECOLI 1-123  
L | 50S ribosomal protein L15 | RL15_ECOLI 1-144  
M | 50S ribosomal protein L16 | RL16_ECOLI 1-136  
N | 50S ribosomal protein L17 | RL17_ECOLI 1-127  
O | 50S ribosomal protein L18 | RL18_ECOLI 1-117  
P | 50S ribosomal protein L19 | RL19_ECOLI 1-115  
Q | 50S ribosomal protein L20 | RL20_ECOLI 1-118  
R | 50S ribosomal protein L21 | RL21_ECOLI 1-103  
S | 50S ribosomal protein L22 | RL22_ECOLI 1-110  
T | 50S ribosomal protein L23 | RL23_ECOLI 1-100  
U | 50S ribosomal protein L24 | RL24_ECOLI 1-104  
V | 50S ribosomal protein L25 | RL25_ECOLI 1-94  
W | 50S ribosomal protein L27 | RL27_ECOLI 1-85  
X | 50S ribosomal protein L28 | RL28_ECOLI 1-78  
Y | 50S ribosomal protein L29 | RL29_ECOLI 1-63  
Z | 50S ribosomal protein L30 | RL30_ECOLI 1-59  
a | 50S ribosomal protein L31 | RL31_ECOLI 1-70  
b | 50S ribosomal protein L32 | RL32_ECOLI 1-57  
c | 50S ribosomal protein L33 | RL33_ECOLI 1-55  
d | 50S ribosomal protein L34 | RL34_ECOLI 1-46  
e | 50S ribosomal protein L35 | RL35_ECOLI 1-65  
f | 50S ribosomal protein L36 | RL36_ECOLI 1-38  
g | 30S ribosomal protein S2 | RS2_ECOLI 1-241  
h | 30S ribosomal protein S3 | RS3_ECOLI 1-233  
i | 30S ribosomal protein S4 | RS4_ECOLI 1-206  
j | 30S ribosomal protein S5 | RS5_ECOLI 1-167  
k | 30S ribosomal protein S6 | RS6_ECOLI 1-135  
l | 30S ribosomal protein S7 | RS7_ECOLI 1-179  
m | 30S ribosomal protein S8 | RS8_ECOLI 1-130  
n | 30S ribosomal protein S9 | RS9_ECOLI 1-130  
o | 30S ribosomal protein S10 | RS10_ECOLI 1-103  
p | 30S ribosomal protein S11 | RS11_ECOLI 1-129  
q | 30S ribosomal protein S12 | RS12_ECOLI 1-124  
r | 30S ribosomal protein S13 | RS13_ECOLI 1-118  
s | 30S ribosomal protein S14 | RS14_ECOLI 1-101  
t | 30S ribosomal protein S15 | RS15_ECOLI 1-89  
u | 30S ribosomal protein S16 | RS16_ECOLI 1-82  
v | 30S ribosomal protein S17 | RS17_ECOLI 1-84  
w | 30S ribosomal protein S18 | RS18_ECOLI 1-75  
x | 30S ribosomal protein S19 | RS19_ECOLI 1-92  
y | 30S ribosomal protein S20 | RS20_ECOLI 1-87  
z | 30S ribosomal protein S21 | RS21_ECOLI 1-71  
  
Non-standard residues in 5mdz.cif #8  
---  
FME — N-formylmethionine  
MG — magnesium ion  
ZN — zinc ion  
  

> open
> /Users/dalar193/wd/deltaRibosomes/modelling/references/5mdz_emd_3493.map id
> 1.15

Opened 5mdz_emd_3493.map as #8, grid size 400,400,400, pixel 1.04, shown at
level 0.105, step 2, values float32  

> style #1.16 stick

Changed 146639 atom styles  

> style #1.15 mesh

Expected a keyword  

> volume #1.15 style mesh

> mmaker #1.16/1 to #1.2/a

Using Nucleic matrix instead of BLOSUM-62 for matching  
Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | Nucleic  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 8emm, chain a (#1.2) with 5mdz.cif, chain 1 (#1.16), sequence
alignment score = 10738.3  
RMSD between 2713 pruned atom pairs is 0.465 angstroms; (across all 2753
pairs: 0.598)  
  

> hide #1.16

> ~cartoon #1.16

> cartoon #1.16/1:2449-2463,2487-2501

> show #1.16/1:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.16 purple

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/1:2457,2498,2501,2449 & sidechain orange target a

> color #1.16/1:2451 & sidechain green yellow target a

> hbonds #1.16/1:2491 restrict #1.16& #1.16/1:2491 :< 4 color dark orange

3 hydrogen bonds found  

> show #1.16/1:2518 & sidechain

> hide #1.16/1:MG,HOH

> show #1.16/1:3289

> color #1.16/1:MG tomato

> pbond #1.16/1:2452@OP1 #1.16/1:3289 color cyan

> view matrix

view matrix camera
-0.61221,0.59688,0.51859,162.88,-0.42191,0.3081,-0.85268,141.46,-0.66872,-0.74083,0.063202,142.95  
view matrix models
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,1,0,#12.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.2,1,0,0,0,0,1,0,0,0,0,1,0,#12.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.3,1,0,0,0,0,1,0,0,0,0,1,0,#12.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.4,1,0,0,0,0,1,0,0,0,0,1,0,#12.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.5,1,0,0,0,0,1,0,0,0,0,1,0,#12.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.6,1,0,0,0,0,1,0,0,0,0,1,0,#12.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.7,1,0,0,0,0,1,0,0,0,0,1,0,#12.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.8,1,0,0,0,0,1,0,0,0,0,1,0,#12.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#12.9,1,0,0,0,0,1,0,0,0,0,1,0,#12.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#13,1,0,0,0,0,1,0,0,0,0,1,0,#13.10,1,0,0,0,0,1,0,0,0,0,1,0,#13.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.2,1,0,0,0,0,1,0,0,0,0,1,0,#13.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.3,1,0,0,0,0,1,0,0,0,0,1,0,#13.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.4,1,0,0,0,0,1,0,0,0,0,1,0,#13.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.5,1,0,0,0,0,1,0,0,0,0,1,0,#13.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.6,1,0,0,0,0,1,0,0,0,0,1,0,#13.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.7,1,0,0,0,0,1,0,0,0,0,1,0,#13.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.8,1,0,0,0,0,1,0,0,0,0,1,0,#13.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#13.9,1,0,0,0,0,1,0,0,0,0,1,0,#13.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14,1,0,0,0,0,1,0,0,0,0,1,0,#14.10,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.10.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.2.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.3.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.4,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.4.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.5,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.5.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.6,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.6.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.7,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.7.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.8,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.8.3,1,0,0,0,0,1,0,0,0,0,1,0,#14.9,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#14.9.3,1,0,0,0,0,1,0,0,0,0,1,0,#20,1,0,0,0,0,1,0,0,0,0,1,0,#20.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.2,1,0,0,0,0,1,0,0,0,0,1,0,#20.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.3,1,0,0,0,0,1,0,0,0,0,1,0,#20.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#20.4,1,0,0,0,0,1,0,0,0,0,1,0,#20.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#21,1,0,0,0,0,1,0,0,0,0,1,0,#21.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.2,1,0,0,0,0,1,0,0,0,0,1,0,#21.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.3,1,0,0,0,0,1,0,0,0,0,1,0,#21.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#21.4,1,0,0,0,0,1,0,0,0,0,1,0,#21.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22,1,0,0,0,0,1,0,0,0,0,1,0,#22.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.2.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.3.3,1,0,0,0,0,1,0,0,0,0,1,0,#22.4,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#22.4.3,1,0,0,0,0,1,0,0,0,0,1,0,#23,1,0,0,0,0,1,0,0,0,0,1,0,#23.10,1,0,0,0,0,1,0,0,0,0,1,0,#23.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.2,1,0,0,0,0,1,0,0,0,0,1,0,#23.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.3,1,0,0,0,0,1,0,0,0,0,1,0,#23.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.4,1,0,0,0,0,1,0,0,0,0,1,0,#23.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.5,1,0,0,0,0,1,0,0,0,0,1,0,#23.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.6,1,0,0,0,0,1,0,0,0,0,1,0,#23.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.7,1,0,0,0,0,1,0,0,0,0,1,0,#23.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.8,1,0,0,0,0,1,0,0,0,0,1,0,#23.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#23.9,1,0,0,0,0,1,0,0,0,0,1,0,#23.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25,1,0,0,0,0,1,0,0,0,0,1,0,#25.10,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.10.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.1.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.2.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.3.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.4,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.4.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.5,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.5.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.6,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.6.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.7,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.7.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.8,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.8.3,1,0,0,0,0,1,0,0,0,0,1,0,#25.9,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.1,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.2,1,0,0,0,0,1,0,0,0,0,1,0,#25.9.3,1,0,0,0,0,1,0,0,0,0,1,0,#7,1,0,0,0,0,1,0,0,0,0,1,0  
  

> view position #1.15 sameAsModels #1.16

> hide #!1.1 models

> hide #!1.2 models

> volume #1.15 step 1

> cartoon suppressBackboneDisplay false

> cartoon tether scale 0

> hide #1.16

> ~cartoon #1.16

> cartoon #1.16/1:2449-2463,2487-2501

> show #1.16/1:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.16 purple

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/1:2457,2498,2501,2449 & sidechain orange target a

> color #1.16/1:2451 & sidechain green yellow target a

> hbonds #1.16/1:2491 restrict #1.16& #1.16/1:2491 :< 4 color dark orange

3 hydrogen bonds found  

> show #1.16/1:2518 & sidechain

> hide #1.16/1:MG,HOH

> show #1.16/1:3289

> color #1.16/1:MG tomato

> pbond #1.16/1:2452@OP1 #1.16/1:3289 color cyan

> volume #1.15 level 0.1

> hide #!1.15 models

> hide #!1.16 models

> show #!1.2 models

> show #!1.1 models

> volume zone #1.1 nearAtoms (#1.2/a:2491 | #1.16/1:2491 ) & sidechain range 2

> view matrix camera
> -0.61221,0.59688,0.51859,162.88,-0.42191,0.3081,-0.85268,141.46,-0.66872,-0.74083,0.063202,142.95

> hide #1.2

> ~cartoon #1.2

> cartoon #1.2/a:2449-2463,2487-2501

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.2 dark slate gray

> color #1.2/a:2491 & sidechain teal target a

> color #1.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #1.2/a:2451 & sidechain green yellow target a

> hbonds #1.2/a:2491 restrict #1.2& #1.2/a:2491 :< 4 color dark orange

4 hydrogen bonds found  

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> color #1.2/v medium aquamarine

> hide #1.2/a:MG,HOH

> show #1.2/a:6231,8885,6996,8460

> color #1.2/a:MG tomato

> color #1.2/a:HOH royal blue

> view matrix camera
> -0.61221,0.59688,0.51859,162.88,-0.42191,0.3081,-0.85268,141.46,-0.66872,-0.74083,0.063202,142.95

> view name H89

> view H89

> show #!1.16 models

> hide #1.16

> ~cartoon #1.16

> show #1.16/1:2491 & sidechain

> color #1.2 dark orange target p

> hide #1.2/a:6996,8460

> hide #!1.16 models

> view H89

> hide #!1.1 models

> hide #1.16

> ~cartoon #1.16

> cartoon #1.16/1:2449-2463,2487-2501

> show #1.16/1:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.16 purple

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/1:2457,2498,2501,2449 & sidechain orange target a

> color #1.16/1:2451 & sidechain green yellow target a

> hbonds #1.16/1:2491 restrict #1.16& #1.16/1:2491 :< 4 color dark orange

3 hydrogen bonds found  

> show #1.16/1:2518 & sidechain

> hide #1.16/1:MG,HOH

> show #1.16/1:3289

> color #1.16/1:MG tomato

> pbond #1.16/1:2452@OP1 #1.16/1:3289 color cyan

> hide #!1.2 models

> show #!1.16 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> transparency 0.5 #1.16 target c

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> transparency #1.16 0.5 target c

> transparency #1.16 0.5 target 0

Invalid "target" argument: Character '0' is not an allowed target, must be one
of acrsbmpfl  

> ~transparency #1.16

Unknown command: ~transparency #1.16  

> transparency #1.16 1

> transparency #1.16 0

> transparency #1.16 1

> transparency #1.16 1 target c

> transparency #1.16 0 target c

> transparency #1.16 80 target c

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> hide #4.1

> ~cartoon #4.1

> cartoon #4.1/a:2449-2463,2487-2501

> show #4.1/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #4.1 pale green

> color #4.1/a:2491 & sidechain lime target a

> color #4.1/a:2457,2498,2501,2449 & sidechain orange target a

> color #4.1/a:2451 & sidechain green yellow target a

> hbonds #4.1/a:2491 restrict #4.1& #4.1/a:2491 :< 4 color cyan

Atom specifier selects no atoms  

> show #4.1/a:2518 & sidechain

> show #4.1/v:1-5

> color #4.1/v medium spring green

> hide #4.2

> ~cartoon #4.2

> cartoon #4.2/a:2449-2463,2487-2501

> show #4.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #4.2 pale green

> color #4.2/a:2491 & sidechain lime target a

> color #4.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #4.2/a:2451 & sidechain green yellow target a

> hbonds #4.2/a:2491 restrict #4.2& #4.2/a:2491 :< 4 color cyan

Atom specifier selects no atoms  

> show #4.2/a:2518 & sidechain

> show #4.2/v:1-5

> color #4.2/v medium spring green

> hide #4.7

> ~cartoon #4.7

> cartoon #4.7/a:2449-2463,2487-2501

> show #4.7/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #4.7 pale green

> color #4.7/a:2491 & sidechain lime target a

> color #4.7/a:2457,2498,2501,2449 & sidechain orange target a

> color #4.7/a:2451 & sidechain green yellow target a

> hbonds #4.7/a:2491 restrict #4.7& #4.7/a:2491 :< 4 color cyan

Atom specifier selects no atoms  

> show #4.7/a:2518 & sidechain

> show #4.7/v:1-5

> color #4.7/v medium spring green

> hide #4.3

> ~cartoon #4.3

> cartoon #4.3/a:2449-2463,2487-2501

> show #4.3/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #4.3 plum

> color #4.3/a:2491 & sidechain medium violet red target a

> color #4.3/a:2457,2498,2501,2449 & sidechain orange target a

> color #4.3/a:2451 & sidechain green yellow target a

> hbonds #4.3/a:2491 restrict #4.3 & #4.3/a:2491 :< 4 color cyan

Atom specifier selects no atoms  

> show #4.3/a:2518 & sidechain

> show #4.3/v:1-5

> color #4.3/v medium orchid

> hide #!1.16 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #6.1

> ~cartoon #6.1

> cartoon #6.1/a:2449-2463,2487-2501

> show #6.1/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.1 pale green

> color #6.1/a:2491 & sidechain lime target a

> color #6.1/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.1/a:2451 & sidechain green yellow target a

> hbonds #6.1/a:2491 restrict #6.1& #6.1/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> show #6.1/a:2518 & sidechain

> show #6.1/v:1-5

> color #6.1/v medium spring green

> hide #6.2

> ~cartoon #6.2

> cartoon #6.2/a:2449-2463,2487-2501

> show #6.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.2 pale green

> color #6.2/a:2491 & sidechain lime target a

> color #6.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.2/a:2451 & sidechain green yellow target a

> hbonds #6.2/a:2491 restrict #6.2& #6.2/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> show #6.2/a:2518 & sidechain

> show #6.2/v:1-5

> color #6.2/v medium spring green

> hide #6.7

> ~cartoon #6.7

> cartoon #6.7/a:2449-2463,2487-2501

> show #6.7/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.7 pale green

> color #6.7/a:2491 & sidechain lime target a

> color #6.7/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.7/a:2451 & sidechain green yellow target a

> hbonds #6.7/a:2491 restrict #6.7& #6.7/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> show #6.7/a:2518 & sidechain

> show #6.7/v:1-5

> color #6.7/v medium spring green

> hide #6.3

> ~cartoon #6.3

> cartoon #6.3/a:2449-2463,2487-2501

> show #6.3/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.3 plum

> color #6.3/a:2491 & sidechain medium violet red target a

> color #6.3/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.3/a:2451 & sidechain green yellow target a

> hbonds #6.3/a:2491 restrict #6.3 & #6.3/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> show #6.3/a:2518 & sidechain

> show #6.3/v:1-5

> color #6.3/v medium orchid

> hide #6.4

> ~cartoon #6.4

> cartoon #6.4/a:2449-2463,2487-2501

> show #6.4/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.4 plum

> color #6.4/a:2491 & sidechain medium violet red target a

> color #6.4/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.4/a:2451 & sidechain green yellow target a

> hbonds #6.4/a:2491 restrict #6.4 & #6.4/a:2491 :< 4 color cyan

3 hydrogen bonds found  

> show #6.4/a:2518 & sidechain

> show #6.4/v:1-5

> color #6.4/v medium orchid

> hide #6.5

> ~cartoon #6.5

> cartoon #6.5/a:2449-2463,2487-2501

> show #6.5/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.5 plum

> color #6.5/a:2491 & sidechain medium violet red target a

> color #6.5/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.5/a:2451 & sidechain green yellow target a

> hbonds #6.5/a:2491 restrict #6.5 & #6.5/a:2491 :< 4 color cyan

3 hydrogen bonds found  

> show #6.5/a:2518 & sidechain

> show #6.5/v:1-5

> color #6.5/v medium orchid

> hide #6.6

> ~cartoon #6.6

> cartoon #6.6/a:2449-2463,2487-2501

> show #6.6/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.6 plum

> color #6.6/a:2491 & sidechain medium violet red target a

> color #6.6/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.6/a:2451 & sidechain green yellow target a

> hbonds #6.6/a:2491 restrict #6.6 & #6.6/a:2491 :< 4 color cyan

3 hydrogen bonds found  

> show #6.6/a:2518 & sidechain

> show #6.6/v:1-5

> color #6.6/v medium orchid

> hide #6.8

> ~cartoon #6.8

> cartoon #6.8/a:2449-2463,2487-2501

> show #6.8/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.8 plum

> color #6.8/a:2491 & sidechain medium violet red target a

> color #6.8/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.8/a:2451 & sidechain green yellow target a

> hbonds #6.8/a:2491 restrict #6.8 & #6.8/a:2491 :< 4 color cyan

3 hydrogen bonds found  

> show #6.8/a:2518 & sidechain

> show #6.8/v:1-5

> color #6.8/v medium orchid

> hide #6.9

> ~cartoon #6.9

> cartoon #6.9/a:2449-2463,2487-2501

> show #6.9/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.9 plum

> color #6.9/a:2491 & sidechain medium violet red target a

> color #6.9/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.9/a:2451 & sidechain green yellow target a

> hbonds #6.9/a:2491 restrict #6.9 & #6.9/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> show #6.9/a:2518 & sidechain

> show #6.9/v:1-5

> color #6.9/v medium orchid

> hide #6.10

> ~cartoon #6.10

> cartoon #6.10/a:2449-2463,2487-2501

> show #6.10/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.10 plum

> color #6.10/a:2491 & sidechain medium violet red target a

> color #6.10/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.10/a:2451 & sidechain green yellow target a

> hbonds #6.10/a:2491 restrict #6.10 & #6.10/a:2491 :< 4 color cyan

3 hydrogen bonds found  

> show #6.10/a:2518 & sidechain

> show #6.10/v:1-5

> color #6.10/v medium orchid

> show #!6.2 models

> hide #!6.1 models

> show #!6.1 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.2 models

> hide #!6.7 models

> hide #!6.1 models

> show #!6.3 models

> show #!6.4 models

> show #!6.5 models

> show #!6.6 models

> show #!6.8 models

> show #!6.9 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> hide #!6.9 models

> hide #!6.8 models

> hide #!6.6 models

> hide #!6.5 models

> hide #!6.4 models

> hide #!6.3 models

> show #!6.3 models

> hide #!6.3 models

> show #!1.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> hide #!1.2 cartoons

> cartoon #1.2/a:2449-2463,2487-2501

> transparency #1.2 0 target c

> transparency #1.16 0 target c

> transparency #6.* 0 target c

> transparency #25.* 0 target c

> transparency #14.* 0 target c

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.10 models

> hide #!6.10 models

> hide #1.2

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> show #!1.16 models

> hide #!1.16 models

> transparency #1.2 80 target c

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.8 models

> show #!6.7 models

> hide #!6.8 models

> show #!6.8 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.8 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.9 models

> show #!6.10 models

> hide #!6.8 models

> hide #!6.10 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.1 models

> hbonds #6.1/a:2491 restrict #6.1& #6.1/a:2491 :< 4 color cyan

4 hydrogen bonds found  

> hbonds #6.1/v:1-3 restrict #6.1& #6.1/a:2449-2501 :< 4 color cyan

2 hydrogen bonds found  

> pbond #6.1/a:2494@OP1 #6.1/v:3@N color dark orange

> hbonds #6.1/v:1-3/a:2491 interModel false restrict #6.1 & #6.1/a:2491,2494
> :< 4 color dark orange

6 hydrogen bonds found  

> hide #1.2

> ~cartoon #1.2

> cartoon #1.2/a:2449-2463,2487-2501

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.2 dark slate gray

> color #1.2/a:2491 & sidechain teal target a

> color #1.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #1.2/a:2451 & sidechain green yellow target a

> hbonds #1.2/a:2491/v:1-3 interModel false restrict #1.2& #1.2/a:2491,2494 :<
> 4 color dark orange

5 hydrogen bonds found  

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> color #1.2/v medium aquamarine

> hide #1.2/a:MG,HOH

> show #1.2/a:6231,8885

> color #1.2/a:MG tomato

> color #1.2/a:HOH royal blue

> color #1.2 dark orange target p

> pbond #1.2/a:2452@OP1 #1.2/a:6231 color dark orange

> pbond #1.2/a:6231 #1.2/a:8885 color dark orange

> pbond #1.2/a:8885 #1.2/a:2493@OP1 color dark orange

> pbond #1.2/a:8885 #1.2/a:2494@OP2 color dark orange

> windowsize 580 800

> view matrix camera
> -0.61221,0.59688,0.51859,162.88,-0.42191,0.3081,-0.85268,141.46,-0.66872,-0.74083,0.063202,142.95

> ~clip

> clip near -19.424 far 12.221

> hide #1.16

> ~cartoon #1.16

> cartoon #1.16/1:2449-2463,2487-2501

> show #1.16/1:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.16 purple

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/1:2457,2498,2501,2449 & sidechain orange target a

> color #1.16/1:2451 & sidechain green yellow target a

> hbonds #1.16/1:2491/v:1-3 interModel false restrict #1.16& #1.16/1:2491,2494
> :< 4 color dark orange

3 hydrogen bonds found  

> show #1.16/1:2518 & sidechain

> hide #1.16/1:MG,HOH

> show #1.16/1:3289

> color #1.16/1:MG tomato

> pbond #1.16/1:2452@OP1 #1.16/1:3289 color cyan

> hide #6.1

> ~cartoon #6.1

> cartoon #6.1/a:2449-2463,2487-2501

> show #6.1/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #6.1 pale green

> color #6.1/a:2491 & sidechain lime target a

> color #6.1/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.1/a:2451 & sidechain green yellow target a

> hbonds #6.1/a:2491/v:1-3 interModel false restrict #6.1& #6.1/a:2491,2494 :<
> 4 color dark orange

6 hydrogen bonds found  

> show #6.1/a:2518 & sidechain

> show #6.1/v:1-5

> color #6.1/v medium spring green

> pbond #6.1/a:2494@OP1 #6.1/v:3@N color dark orange

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.2 models

> hbonds #6.2/a:2491/v:1-3 interModel false restrict #6.2& #6.2/a:2491,2494 :<
> 4 color dark orange

5 hydrogen bonds found  

> show #!6.3 models

> hide #!6.2 models

> show #!6.4 models

> hide #!6.3 models

> show #!6.5 models

> hide #!6.4 models

> show #!6.6 models

> hide #!6.5 models

> show #!6.7 models

> hide #!6.6 models

> hbonds #6.7/a:2491/v:1-3 interModel false restrict #6.7& #6.7/a:2491,2494 :<
> 4 color dark orange

6 hydrogen bonds found  

> show #!6.8 models

> hide #!6.7 models

> show #!6.9 models

> hide #!6.8 models

> hbonds #6.9/a:2491/v:1-3 interModel false restrict #6.9 & #6.9/a:2491,2494
> :< 4 color cyan

4 hydrogen bonds found  

> show #!6.10 models

> hide #!6.9 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> hide #!6.10 models

> show #!6.10 models

> show #!6.9 models

> hide #!6.10 models

> show #!6.7 models

> hide #!6.9 models

> show #!6.6 models

> hide #!6.6 models

> view H89

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.10 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.3 models

> hide #!6.4 models

> hide #!6.5 models

> hide #!6.6 models

> hide #!6.7 models

> hide #!6.8 models

> hide #!6.9 models

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png height 580 width 800
> supersample 4

> hide #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png height 580 width 800
> supersample 4

> hide #!1.16 models

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.10 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.3 models

> hide #!6.4 models

> hide #!6.5 models

> hide #!6.6 models

> hide #!6.7 models

> hide #!6.8 models

> hide #!6.9 models

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> transparency #1.2 0 target c

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.10 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.3 models

> hide #!6.4 models

> hide #!6.5 models

> hide #!6.6 models

> hide #!6.7 models

> hide #!6.8 models

> hide #!6.9 models

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!1.2 models

> hide #1.2

> show #!1.2 models

> hide #1.2

> transparency #1.2 80 target c

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ_cmp8EMM.png width 580 height
> 800 supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9_cmp8EMM.png width 580
> height 800 supersample 4

> hide #!6.9 models

> transparency #1.2 0 target c

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-cartoon.png width 580 height
> 800 supersample 4

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-5MDZ.png width 580 height
> 800 supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class0.png width 580
> height 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class1.png width 580
> height 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class2.png width 580
> height 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class3.png width 580
> height 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class4.png width 580
> height 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class5.png width 580
> height 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class6.png width 580
> height 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class7.png width 580
> height 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class8.png width 580
> height 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-del9-class9.png width 580
> height 800 supersample 4

> hide #!6.9 models

> transparency #1.2 80 target c

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--5MDZ.png width 580
> height 800 supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class0.png width
> 580 height 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class1.png width
> 580 height 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class2.png width
> 580 height 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class3.png width
> 580 height 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class4.png width
> 580 height 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class5.png width
> 580 height 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class6.png width
> 580 height 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class7.png width
> 580 height 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class8.png width
> 580 height 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi--del9-class9.png width
> 580 height 800 supersample 4

> hide #!6.9 models

> transparency #1.2 80 target c

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-5MDZ.png width 580
> height 800 supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class0.png width
> 580 height 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class1.png width
> 580 height 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class2.png width
> 580 height 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class3.png width
> 580 height 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class4.png width
> 580 height 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class5.png width
> 580 height 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class6.png width
> 580 height 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class7.png width
> 580 height 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class8.png width
> 580 height 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM-semi-del9-class9.png width
> 580 height 800 supersample 4

> hide #!6.9 models

> hide #14.3

> ~cartoon #14.3

> cartoon #14.3/a:2449-2463,2487-2501

> show #14.3/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.3 pale green

> color #14.3/a:2491 & sidechain lime target a

> color #14.3/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.3/a:2451 & sidechain green yellow target a

> hbonds #14.3/a:2491/v:1-3 interModel false restrict #14.3& #14.3/a:2491,2494
> :< 4 color dark orange

3 hydrogen bonds found  

> show #14.3/a:2518 & sidechain

> show #14.3/v:1-5

> color #14.3/v medium spring green

> transparency #1.2 0 target c

> hide #!1.2 models

> show #!14.4 models

> hide #!14.4 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hbonds #14.3/a:2491/v:1-3 interModel false restrict #14.3& #14.3/a:2491,2494
> :< 4 color dark orange

3 hydrogen bonds found  

> show #!6.8 models

> hide #!6.8 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> hide #14.9

> ~cartoon #14.9

> cartoon #14.9/a:2449-2463,2487-2501

> show #14.9/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.9 pale green

> color #14.9/a:2491 & sidechain lime target a

> color #14.9/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.9/a:2451 & sidechain green yellow target a

> hbonds #14.9/a:2491/v:1-3 interModel false restrict #14.9& #14.9/a:2491,2494
> :< 4 color dark orange

4 hydrogen bonds found  

> show #14.9/a:2518 & sidechain

> show #14.9/v:1-5

> color #14.9/v medium spring green

> hide #14.1

> ~cartoon #14.1

> cartoon #14.1/a:2449-2463,2487-2501

> show #14.1/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.1 plum

> color #14.1/a:2491 & sidechain medium violet red target a

> color #14.1/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.1/a:2451 & sidechain green yellow target a

> hbonds #14.1/a:2491/v:1-3 interModel false restrict #14.1 &
> #14.1/a:2491,2494 :< 4 color cyan

2 hydrogen bonds found  

> show #14.1/a:2518 & sidechain

> show #14.1/v:1-5

> color #14.1/v medium orchid

> hide #14.2

> ~cartoon #14.2

> cartoon #14.2/a:2449-2463,2487-2501

> show #14.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.2 plum

> color #14.2/a:2491 & sidechain medium violet red target a

> color #14.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.2/a:2451 & sidechain green yellow target a

> hbonds #14.2/a:2491/v:1-3 interModel false restrict #14.2 &
> #14.2/a:2491,2494 :< 4 color cyan

2 hydrogen bonds found  

> show #14.2/a:2518 & sidechain

> show #14.2/v:1-5

> color #14.2/v medium orchid

> hide #14.4

> ~cartoon #14.4

> cartoon #14.4/a:2449-2463,2487-2501

> show #14.4/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.4 plum

> color #14.4/a:2491 & sidechain medium violet red target a

> color #14.4/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.4/a:2451 & sidechain green yellow target a

> hbonds #14.4/a:2491/v:1-3 interModel false restrict #14.4 &
> #14.4/a:2491,2494 :< 4 color cyan

3 hydrogen bonds found  

> show #14.4/a:2518 & sidechain

> show #14.4/v:1-5

> color #14.4/v medium orchid

> hide #14.5

> ~cartoon #14.5

> cartoon #14.5/a:2449-2463,2487-2501

> show #14.5/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.5 plum

> color #14.5/a:2491 & sidechain medium violet red target a

> color #14.5/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.5/a:2451 & sidechain green yellow target a

> hbonds #14.5/a:2491/v:1-3 interModel false restrict #14.5 &
> #14.5/a:2491,2494 :< 4 color cyan

3 hydrogen bonds found  

> show #14.5/a:2518 & sidechain

> show #14.5/v:1-5

> color #14.5/v medium orchid

> hide #14.6

> ~cartoon #14.6

> cartoon #14.6/a:2449-2463,2487-2501

> show #14.6/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.6 plum

> color #14.6/a:2491 & sidechain medium violet red target a

> color #14.6/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.6/a:2451 & sidechain green yellow target a

> hbonds #14.6/a:2491/v:1-3 interModel false restrict #14.6 &
> #14.6/a:2491,2494 :< 4 color cyan

3 hydrogen bonds found  

> show #14.6/a:2518 & sidechain

> show #14.6/v:1-5

> color #14.6/v medium orchid

> hide #14.7

> ~cartoon #14.7

> cartoon #14.7/a:2449-2463,2487-2501

> show #14.7/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.7 plum

> color #14.7/a:2491 & sidechain medium violet red target a

> color #14.7/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.7/a:2451 & sidechain green yellow target a

> hbonds #14.7/a:2491/v:1-3 interModel false restrict #14.7 &
> #14.7/a:2491,2494 :< 4 color cyan

3 hydrogen bonds found  

> show #14.7/a:2518 & sidechain

> show #14.7/v:1-5

> color #14.7/v medium orchid

> hide #14.8

> ~cartoon #14.8

> cartoon #14.8/a:2449-2463,2487-2501

> show #14.8/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.8 plum

> color #14.8/a:2491 & sidechain medium violet red target a

> color #14.8/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.8/a:2451 & sidechain green yellow target a

> hbonds #14.8/a:2491/v:1-3 interModel false restrict #14.8 &
> #14.8/a:2491,2494 :< 4 color cyan

4 hydrogen bonds found  

> show #14.8/a:2518 & sidechain

> show #14.8/v:1-5

> color #14.8/v medium orchid

> hide #14.10

> ~cartoon #14.10

> cartoon #14.10/a:2449-2463,2487-2501

> show #14.10/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #14.10 plum

> color #14.10/a:2491 & sidechain medium violet red target a

> color #14.10/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.10/a:2451 & sidechain green yellow target a

> hbonds #14.10/a:2491/v:1-3 interModel false restrict #14.10 &
> #14.10/a:2491,2494 :< 4 color cyan

3 hydrogen bonds found  

> show #14.10/a:2518 & sidechain

> show #14.10/v:1-5

> color #14.10/v medium orchid

> hide #!14.3 models

> show #!14.1 models

> view H89

> show #!1.2 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.1 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!1.2 models

> hide #!1.2 models

> hide #!14.1 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.4 models

> hide #!14.4 models

> show #!14.5 models

> hide #!14.5 models

> show #!14.6 models

> hide #!14.6 models

> show #!14.7 models

> hide #!14.7 models

> show #!14.8 models

> hide #!14.8 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.10 models

> hide #!14.10 models

> show #!25.1 models

> hide #25.1

> ~cartoon #25.1

> cartoon #25.1/a:2449-2463,2487-2501

> show #25.1/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.1 pale green

> color #25.1/a:2491 & sidechain lime target a

> color #25.1/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.1/a:2451 & sidechain green yellow target a

> hbonds #25.1/a:2491/v:1-3 interModel false restrict #25.1& #25.1/a:2491,2494
> :< 4 color dark orange

5 hydrogen bonds found  

> show #25.1/a:2518 & sidechain

> show #25.1/v:1-5

> color #25.1/v medium spring green

> hide #25.2

> ~cartoon #25.2

> cartoon #25.2/a:2449-2463,2487-2501

> show #25.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.2 pale green

> color #25.2/a:2491 & sidechain lime target a

> color #25.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.2/a:2451 & sidechain green yellow target a

> hbonds #25.2/a:2491/v:1-3 interModel false restrict #25.2& #25.2/a:2491,2494
> :< 4 color dark orange

7 hydrogen bonds found  

> show #25.2/a:2518 & sidechain

> show #25.2/v:1-5

> color #25.2/v medium spring green

> hide #25.3

> ~cartoon #25.3

> cartoon #25.3/a:2449-2463,2487-2501

> show #25.3/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.3 pale green

> color #25.3/a:2491 & sidechain lime target a

> color #25.3/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.3/a:2451 & sidechain green yellow target a

> hbonds #25.3/a:2491/v:1-3 interModel false restrict #25.3& #25.3/a:2491,2494
> :< 4 color dark orange

4 hydrogen bonds found  

> show #25.3/a:2518 & sidechain

> show #25.3/v:1-5

> color #25.3/v medium spring green

> hide #25.4

> ~cartoon #25.4

> cartoon #25.4/a:2449-2463,2487-2501

> show #25.4/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.4 pale green

> color #25.4/a:2491 & sidechain lime target a

> color #25.4/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.4/a:2451 & sidechain green yellow target a

> hbonds #25.4/a:2491/v:1-3 interModel false restrict #25.4& #25.4/a:2491,2494
> :< 4 color dark orange

5 hydrogen bonds found  

> show #25.4/a:2518 & sidechain

> show #25.4/v:1-5

> color #25.4/v medium spring green

> hide #25.5

> ~cartoon #25.5

> cartoon #25.5/a:2449-2463,2487-2501

> show #25.5/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.5 pale green

> color #25.5/a:2491 & sidechain lime target a

> color #25.5/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.5/a:2451 & sidechain green yellow target a

> hbonds #25.5/a:2491/v:1-3 interModel false restrict #25.5& #25.5/a:2491,2494
> :< 4 color dark orange

4 hydrogen bonds found  

> show #25.5/a:2518 & sidechain

> show #25.5/v:1-5

> color #25.5/v medium spring green

> hide #25.6

> ~cartoon #25.6

> cartoon #25.6/a:2449-2463,2487-2501

> show #25.6/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.6 pale green

> color #25.6/a:2491 & sidechain lime target a

> color #25.6/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.6/a:2451 & sidechain green yellow target a

> hbonds #25.6/a:2491/v:1-3 interModel false restrict #25.6& #25.6/a:2491,2494
> :< 4 color dark orange

5 hydrogen bonds found  

> show #25.6/a:2518 & sidechain

> show #25.6/v:1-5

> color #25.6/v medium spring green

> hide #25.7

> ~cartoon #25.7

> cartoon #25.7/a:2449-2463,2487-2501

> show #25.7/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.7 pale green

> color #25.7/a:2491 & sidechain lime target a

> color #25.7/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.7/a:2451 & sidechain green yellow target a

> hbonds #25.7/a:2491/v:1-3 interModel false restrict #25.7& #25.7/a:2491,2494
> :< 4 color dark orange

3 hydrogen bonds found  

> show #25.7/a:2518 & sidechain

> show #25.7/v:1-5

> color #25.7/v medium spring green

> hide #25.8

> ~cartoon #25.8

> cartoon #25.8/a:2449-2463,2487-2501

> show #25.8/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.8 pale green

> color #25.8/a:2491 & sidechain lime target a

> color #25.8/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.8/a:2451 & sidechain green yellow target a

> hbonds #25.8/a:2491/v:1-3 interModel false restrict #25.8& #25.8/a:2491,2494
> :< 4 color dark orange

5 hydrogen bonds found  

> show #25.8/a:2518 & sidechain

> show #25.8/v:1-5

> color #25.8/v medium spring green

> hide #25.9

> ~cartoon #25.9

> cartoon #25.9/a:2449-2463,2487-2501

> show #25.9/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.9 pale green

> color #25.9/a:2491 & sidechain lime target a

> color #25.9/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.9/a:2451 & sidechain green yellow target a

> hbonds #25.9/a:2491/v:1-3 interModel false restrict #25.9& #25.9/a:2491,2494
> :< 4 color dark orange

5 hydrogen bonds found  

> show #25.9/a:2518 & sidechain

> show #25.9/v:1-5

> color #25.9/v medium spring green

> hide #25.10

> ~cartoon #25.10

> cartoon #25.10/a:2449-2463,2487-2501

> show #25.10/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.10 pale green

> color #25.10/a:2491 & sidechain lime target a

> color #25.10/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.10/a:2451 & sidechain green yellow target a

> hbonds #25.10/a:2491/v:1-3 interModel false restrict #25.10&
> #25.10/a:2491,2494 :< 4 color dark orange

5 hydrogen bonds found  

> show #25.10/a:2518 & sidechain

> show #25.10/v:1-5

> color #25.10/v medium spring green

> hide #!25.1 models

> show #!25.2 models

> hide #!25.2 models

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> hide #!25.7 models

> show #!25.9 models

> hide #!25.8 models

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> hide #!25.9 models

> hide #25.5

> ~cartoon #25.5

> cartoon #25.5/a:2449-2463,2487-2501

> show #25.5/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.5 plum

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> color #25.5/a:2451 & sidechain green yellow target a

> show #25.5/a:2518 & sidechain

> show #25.5/v:1-5

> color #25.5/v medium orchid

> hide #25.7

> ~cartoon #25.7

> cartoon #25.7/a:2449-2463,2487-2501

> show #25.7/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #25.7 plum

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> color #25.7/a:2451 & sidechain green yellow target a

> show #25.7/a:2518 & sidechain

> show #25.7/v:1-5

> color #25.7/v medium orchid

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> hide #!25.9 models

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> hide #!25.10 models

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> hide #!25.10 models

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> color #6.*#14.*#25.* white

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> color #14.*/a:2491 & sidechain medium orchid target a

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> color #6.*#14.*#25.* white

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> color #25.5/a:2491 & sidechain medium orchid target a

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> hide #!25.3 models

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> hide #!25.2 models

> show #!25.1 models

> hide #!25.1 models

> color #6.*#14.*#25.* white

> color (#25.5#25.7/a:2491) & sidechain medium orchid target a

> show #!25.4 models

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> hide #!25.4 models

> hide #!25.5 models

> show #!25.5 models

> hide #!25.5 models

> show #!25.5 models

> color #6.*#14.*#25.* white

> color (#25.5/a:2491) & sidechain medium orchid target a

> color #6.*#14.*#25.* white

> color #25.5/a:2491 & sidechain medium orchid target a

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> color #6.*#14.*#25.*/a:2451 & sidechain green yellow target a

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> color #14.*/a:2491 & sidechain medium orchid target a

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> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

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> color #25.7/a:2491 & sidechain medium orchid target a

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> hide #!25.1 models

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> hide #!25.2 models

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> hide #!25.9 models

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> color #6.*#14.*#25.* dark orange target p

> show #!25.9 models

> hide #!25.10 models

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> hide #!25.9 models

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> hide #!25.8 models

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> hide #!25.7 models

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> show #!25.4 models

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> hide #!6.1 models

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> hide #!6.2 models

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> color #6.*#14.*#25.* white

> color #6.*#14.*#25.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.*#14.*#25.*/a:2451 & sidechain green yellow target a

> color #6.*#14.*#25.*/v medium aquamarine

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> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

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> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.*#14.*#25.* yellow target p

> show #!6.1 models

> hide #!6.1 models

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> hide #!25.1 models

> color #6.*#14.*#25.* white

> color #6.*#14.*#25.*/a:2457,2498,2501,2449 & sidechain orange target a

> show #!6.1 models

> hide #!6.1 models

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> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> color #6.*#14.*#25.* white

> color #6.*#14.*#25.*/a:2457,2498,2501,2449 & sidechain orange target a

> show #!6.1 models

> hide #!6.1 models

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> hide #!6.2 models

> show #!25.2 models

> hide #!25.2 models

> color #6.*#14.*#25.* white

> color #6.*#14.*#25.*/v medium aquamarine

> color #6.*#14.*#25.* yellow target p

> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

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> color #25.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.*/a:2451 & sidechain green yellow target a

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> color #25.*/a:2451 & sidechain green yellow target a

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> show #!6.2 models

> hide #!6.2 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

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> color #6.*#14.*#25.* white

> color #6.*#14.*#25.*/v medium aquamarine

> color #6.*#14.*#25.* yellow target p

> color #6.*/v#14.*/v#25.*/v medium aquamarine

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> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

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> color #6.*#14.*#25.* white

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> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

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> color #25.*/a:2451 & sidechain green yellow target a

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> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

> color #25.*/v medium aquamarine

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> show #!6.3 models

> hide #!6.2 models

> hide #!6.1 models

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> show #!6.1 models

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> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

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> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

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> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

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> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

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> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> transparency #1.2 80 target c

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> color #6.*#14.*#25.* light gray

> color #6.*#14.*#25.* yellow target p

> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.*/a:2457,2498,2501,2449 & sidechain orange target a

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> color #25.*/a:2451 & sidechain green yellow target a

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

> color #25.*/v medium aquamarine

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> view H89

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> view H89

> color #6.1/a:2491,2494 & sidechain teal target a

> color #6.2/a:2491,2494 & sidechain teal target a

> color #6.7/a:2491,2494 & sidechain teal target a

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> color #25.5/a:2491,2494 & sidechain medium orchid target a

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> color #6.1/a:2494 teal target a

> color #6.2/a:2494 teal target a

> color #6.7/a:2494 teal target a

> color #14.3/a:2494 teal target a

> color #14.9/a:2494 teal target a

> color #25.5/a:2494 medium orchid target a

> color #25.7/a:2494 medium orchid target a

> color #6.1/a:2494#6.1/a:2493@O3' teal target a

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> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> show #!6.2 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> hide #!6 models

> show #!6.2 models

> hide #!6.1 models

> hide #!1.2 models

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2495@O3' light gray target a

> color #6.2/a:2495@O3' light gray target a

> color #6.7/a:2495@O3' light gray target a

> color #14.3/a:2495@O3' light gray target a

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> color #25.5/a:2495@O3' light gray target a

> color #25.7/a:2495@O3' light gray target a

> hide #!6.2 models

> show #!6.2 models

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

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> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> show #!6.1 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.1 models

> show #!6.4 models

> hide #!6.3 models

> show #!6.5 models

> hide #!6.4 models

> show #!6.6 models

> hide #!6.5 models

> show #!6.7 models

> hide #!6.6 models

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494 #6.*/a:2493@O3' & sidechain medium orchid target a

> color #14.*/a:2494 #14.*/a:2493@O3' & sidechain medium orchid target a

> color #25.*/a:2494 #25.*/a:2493@O3' & sidechain teal target a

> color #6.*/a:2494@O3' & sidechain light gray target a

> color #14.*/a:2494@O3' & sidechain light gray target a

> color #25.*/a:2494@O3' & sidechain light gray target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> view H89

> hide #1.2

> ~cartoon #1.2

> cartoon #1.2/a:2449-2463,2487-2501

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> color #1.2 dark slate gray

> color #1.2/a:2491 & sidechain teal target a

> color #1.2/a:2494 #1.2/a:2493@O3' teal target a

> color #1.2/a:2494@O3' dark slate blue target a

> color #1.2/a:2457,2498,2501,2449 & sidechain orange target a

> color #1.2/a:2451 & sidechain green yellow target a

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> color #1.2/v medium aquamarine

> hide #1.2/a:MG,HOH

> show #1.2/a:6231,8885

> color #1.2/a:MG tomato

> color #1.2/a:HOH royal blue

> color #1.2 dark orange target p

> pbond #1.2/a:2452@OP1 #1.2/a:6231 color dark orange

> pbond #1.2/a:6231 #1.2/a:8885 color dark orange

> pbond #1.2/a:8885 #1.2/a:2493@OP1 color dark orange

> pbond #1.2/a:8885 #1.2/a:2494@OP2 color dark orange

> transparency #1.2 0 target c

> hide #!6.7 models

> show #!1.2 models

> color #1.2/a:2491 & sidechain teal target a

> color #1.2/a:2494 #1.2/a:2493@O3' teal target a

> color #1.2/a:2494@O3' dark slate gray target a

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> hide #1.2

> transparency #1.2 80 target c

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/a:2494 #1.16/a:2493@O3' magenta target a

> color #1.16/a:2494@O3' purple target a

> show #!1.16 models

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/a:2494 #1.16/a:2493@O3' magenta target a

> color #1.16/a:2494#1.16/a:2493@O3' magenta target a

> color #1.16/1:2494 #1.16/1:2493@O3' magenta target a

> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/1:2494 #1.16/a:2493@O3' magenta target a

> color #1.16/1:2494@O3' purple target a

> transparency #1.2 80 target c

> hide #1.2

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> transparency #1.2 80 target c

> hide #1.2

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494 #6.*/a:2493@O3' & sidechain medium orchid target a

> color #14.*/a:2494 #14.*/a:2493@O3' & sidechain medium orchid target a

> color #25.*/a:2494 #25.*/a:2493@O3' & sidechain teal target a

> color #6.*/a:2494@O3' & sidechain light gray target a

> color #14.*/a:2494@O3' & sidechain light gray target a

> color #25.*/a:2494@O3' & sidechain light gray target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> transparency #1.2 80 target c

> hide #1.2

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> show #!1.16 models

> hide #!1.2 models

> show #1.16/I:76-83

> ~show #1.16/I:76-83

> show #1.16/I:76-83

> show #1.16/l:76-83

> ~show #1.16/l:76-83

[Repeated 1 time(s)]

> ~show #1.16/I:76-83

> show #1.16/M:76-83

[Repeated 1 time(s)]

> color #1.16/M darkred violette

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> show #1.16/M:76-83

> color #1.16/M dark violet

> show #1.16/M:76-83

> color #1.16/M darkred violett

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> show #1.16/M:76-83

> color #1.16/M dark violet

> show #1.16/M:76-83

> color #1.16/M violet

> show #1.16/M:76-83

> color #1.16/M dark violet

> hide #!1.16 models

> show #!1.2 models

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> show #1.2/l:76-83

> color #1.2/l dark violet

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!5.3 models

> hide #!5.3 models

> show #!6.3 models

> hide #1.2

> ~cartoon #1.2

> cartoon #1.2/a:2449-2463,2487-2501

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> hide #1.16

> ~cartoon #1.16

> cartoon #1.16/a:2449-2463,2487-2501

> show #1.16/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.16/a:2518 & sidechain

> show #1.16/v:1-5

> show #1.16/M:76-83

> color #1.16/M dark violet

> show #1.2/l:76-83

> color #1.2/l dark violet

> hide #6.*

> ~cartoon #6.*

> cartoon #6.*/a:2449-2463,2487-2501

> show #6.*/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #6.*/a:2518 & sidechain

> show #6.*/v:1-5

> hide #14.*

> ~cartoon #14.*

> cartoon #14.*/a:2449-2463,2487-2501

> show #14.*/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #14.*/a:2518 & sidechain

> show #14.*/v:1-5

> hide #25.*

> ~cartoon #25.*

> cartoon #25.*/a:2449-2463,2487-2501

> show #25.*/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #25.*/a:2518 & sidechain

> show #25.*/v:1-5

> color #6.*#14.*#25.* light gray

> color #6.*#14.*#25.* yellow target p

> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

> color #25.*/v medium aquamarine

> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.*/a:2451 & sidechain green yellow target a

> color #14.*/a:2451 & sidechain green yellow target a

> color #25.*/a:2451 & sidechain green yellow target a

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494 #6.*/a:2493@O3' & sidechain medium orchid target a

> color #14.*/a:2494 #14.*/a:2493@O3' & sidechain medium orchid target a

> color #25.*/a:2494 #25.*/a:2493@O3' & sidechain teal target a

> color #6.*/a:2494@O3' & sidechain light gray target a

> color #14.*/a:2494@O3' & sidechain light gray target a

> color #25.*/a:2494@O3' & sidechain light gray target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> hide #!6.3 models

> show #!6.3 models

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494#6.*/a:2493@O3' & sidechain medium orchid target a

> color #14.*/a:2494#14.*/a:2493@O3' & sidechain medium orchid target a

> color #25.*/a:2494#25.*/a:2493@O3' & sidechain teal target a

> color #6.*/a:2494@O3' & sidechain light gray target a

> color #14.*/a:2494@O3' & sidechain light gray target a

> color #25.*/a:2494@O3' & sidechain light gray target a

> color #6.*/a:2494#6.*/a:2493@O3' & sidechain medium orchid target a

> color #6.*/a:2494 & sidechain medium orchid target a

> color #6.*/a:2494 medium orchid target a

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494#6.*/a:2493@O3' medium orchid target a

> color #14.*/a:2494#14.*/a:2493@O3' medium orchid target a

> color #25.*/a:2494#25.*/a:2493@O3' teal target a

> color #6.*/a:2494@O3' light gray target a

> color #14.*/a:2494@O3' light gray target a

> color #25.*/a:2494@O3' light gray target a

> hide #!6.3 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.5 models

> hide #!6.5 models

> show #!6.6 models

> hide #!6.6 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.7 models

> hide #!6.7 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.8 models

> hide #!6.8 models

> show #!6.9 models

> hide #!6.9 models

> show #!6.10 models

> hide #!6.10 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.2 models

> hide #!14.2 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.3 models

> hide #!14.3 models

> show #!14.4 models

> hide #!14.4 models

> show #!14.3 models

> distance #14.3/a:2494@OP1 #14.3/v:3@N

Distance between d10_J56_c3 #14.3/a G 2494 OP1 and /v HIS 3 N: 3.101Å  

> close #14.3.3

> hide #!14.3 models

> show #!14.3 models

> ~distance #14.3/a:2494@OP1 #14.3/v:3@N

> hbonds #14.3/a:2491/v:1-3 interModel false restrict #14.3& #14.3/a:2491,2494
> :< 4 color yellow

3 hydrogen bonds found  

> hide #14.3.3 models

> show #14.3.3 models

> show #14.3 target p

> ~show #14.3 target p

> hide #14.3

> hide #14.*

> ~cartoon #14.*

> cartoon #14.*/a:2449-2463,2487-2501

> show #14.*/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #14.*/a:2518 & sidechain

> show #14.*/v:1-5

> show #!14.2 models

> select add #14.2

9343 atoms, 10209 bonds, 28 pseudobonds, 607 residues, 4 models selected  

> select subtract #14.2

Nothing selected  

> hide #!14.2 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.4 models

> hide #!14.4 models

> show #!14.5 models

> hide #!14.5 models

> show #!14.6 models

> hide #!14.6 models

> show #!14.7 models

> hide #!14.7 models

> show #!14.8 models

> hide #!14.8 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.1 models

> hide #!14.1 models

> show #!14.2 models

> hide #!14.2 models

> hide #!14.3 models

> show #!14.3 models

> show #!14.10 models

> hide #!14.10 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> show #!14.9 models

> hide #!14.9 models

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> view H89

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.2 models

> hide #!6.2 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.3 models

> hide #!6.3 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.4 models

> hide #!6.4 models

> show #!6.1 models

> hide #!6.1 models

> show #!6.1 models

> show #!6.2 models

> hide #!6.1 models

> show #!6.1 models

> hide #!6.1 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> ui mousemode right "tape measure"

> marker segment #8 position 130.9,181.6,137 toPosition 131.8,180.9,134.1
> color yellow radius 0.1 label 3.068 labelHeight 0.3068 labelColor yellow

> marker segment #8 position 130.2,181.8,137.1 toPosition 130.8,180.7,134.4
> color yellow radius 0.1 label 2.943 labelHeight 0.2943 labelColor yellow

> marker segment #8 position 129.9,181.8,136.8 toPosition 130.9,180.1,134.4
> color yellow radius 0.1 label 3.101 labelHeight 0.3101 labelColor yellow

> close #8

> view H89

> color #1.2#1.16#6.*#14.*#25.* yellow target p

> view H89

> ~show #1.16/M:76-83

> color #1.16/M dark violet

> ~show #1.2/l:76-83

> color #1.2/l dark violet

> view H89

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.10 models

> hide #!6.1 models

> hide #!6.2 models

> hide #!6.3 models

> hide #!6.4 models

> hide #!6.5 models

> hide #!6.6 models

> hide #!6.7 models

> hide #!6.8 models

> hide #!6.9 models

> view H89

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> transparency #1.2 80 target c

> hide #1.2

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.* models

> hide #!14.* models

> hide #!25.* models

> view H89

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> transparency #1.2 80 target c

> hide #1.2

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> show #1.2/a:6231,8885

> hide #!1.2 models

> show #!1.16 models

> cartoon #1.16/a:2449-2463,2487-2501

> show #1.16/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.16/a:2518 & sidechain

> show #1.16/v:1-5

> cartoon #1.16/1:2449-2463,2487-2501

> show #1.16/1:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.16/1:2518 & sidechain

> show #1.16/W:1-5

> show #1.16/1:3289

> color #1.16/1:MG tomato

> transparency #1.2 80 target c

> hide #1.2

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

> color #25.*/v medium aquamarine

> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #14.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #25.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.*/a:2451 & sidechain green yellow target a

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> color #25.*/a:2451 & sidechain green yellow target a

> color #6.*/a:2491 & sidechain medium orchid target a

> color #14.*/a:2491 & sidechain medium orchid target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494#6.*/a:2493@O3' medium orchid target a

> color #14.*/a:2494#14.*/a:2493@O3' medium orchid target a

> color #25.*/a:2494#25.*/a:2493@O3' teal target a

> color #6.*/a:2494@O3' light gray target a

> color #14.*/a:2494@O3' light gray target a

> color #25.*/a:2494@O3' light gray target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

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> color #25.5/a:2491 & sidechain medium orchid target a

> color #25.7/a:2491 & sidechain medium orchid target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' medium orchid target a

> color #25.7/a:2494 #25.7/a:2493@O3' medium orchid target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> show #!1.16 models

> color #1.16/1:2491 & sidechain medium orchid target a

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> color #6.*#14.*#25.* light gray

> color #1.2#1.16#6.*#14.*#25.* yellow target p

> color #6.*/v medium aquamarine

> color #14.*/v medium aquamarine

> color #25.*/v medium aquamarine

> color #6.*/a:2457,2498,2501,2449 & sidechain orange target a

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> color #25.*/a:2457,2498,2501,2449 & sidechain orange target a

> color #6.*/a:2451 & sidechain green yellow target a

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> color #1.16/1:2491 & sidechain magenta target a

> color #1.16/a:2494#1.16/a:2493@O3' magenta target a

> color #6.*/a:2491 & sidechain magenta target a

> color #14.*/a:2491 & sidechain magenta target a

> color #25.*/a:2491 & sidechain teal target a

> color #6.*/a:2494#6.*/a:2493@O3' magenta target a

> color #14.*/a:2494#14.*/a:2493@O3' magenta target a

> color #25.*/a:2494#25.*/a:2493@O3' teal target a

> color #6.*/a:2494@O3' light gray target a

> color #14.*/a:2494@O3' light gray target a

> color #25.*/a:2494@O3' light gray target a

> color #6.1/a:2491 & sidechain teal target a

> color #6.2/a:2491 & sidechain teal target a

> color #6.7/a:2491 & sidechain teal target a

> color #14.3/a:2491 & sidechain teal target a

> color #14.9/a:2491 & sidechain teal target a

> color #25.5/a:2491 & sidechain magenta target a

> color #25.7/a:2491 & sidechain magenta target a

> color #6.1/a:2494 #6.1/a:2493@O3' teal target a

> color #6.2/a:2494 #6.2/a:2493@O3' teal target a

> color #6.7/a:2494 #6.7/a:2493@O3' teal target a

> color #14.3/a:2494 #14.3/a:2493@O3' teal target a

> color #14.9/a:2494 #14.9/a:2493@O3' teal target a

> color #25.5/a:2494 #25.5/a:2493@O3' magenta target a

> color #25.7/a:2494 #25.7/a:2493@O3' magenta target a

> color #6.1/a:2494@O3' light gray target a

> color #6.2/a:2494@O3' light gray target a

> color #6.7/a:2494@O3' light gray target a

> color #14.3/a:2494@O3' light gray target a

> color #14.9/a:2494@O3' light gray target a

> color #25.5/a:2494@O3' light gray target a

> color #25.7/a:2494@O3' light gray target a

> hide #!1.2 models

> hide #!1.16 models

> hide #!6.* models

> hide #!14.* models

> hide #!25.* models

> view H89

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> transparency #1.2 80 target c

> hide #1.2

> show #!1.2 models

> show #!1.16 models

> save /Users/dalar193/Desktop/H89_U2491/H89-5MDZ.png width 580 height 800
> supersample 4

> hide #!1.16 models

> show #!6.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class0.png width 580 height
> 800 supersample 4

> hide #!6.10 models

> show #!6.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class1.png width 580 height
> 800 supersample 4

> hide #!6.1 models

> show #!6.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class2.png width 580 height
> 800 supersample 4

> hide #!6.2 models

> show #!6.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class3.png width 580 height
> 800 supersample 4

> hide #!6.3 models

> show #!6.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class4.png width 580 height
> 800 supersample 4

> hide #!6.4 models

> show #!6.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class5.png width 580 height
> 800 supersample 4

> hide #!6.5 models

> show #!6.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class6.png width 580 height
> 800 supersample 4

> hide #!6.6 models

> show #!6.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class7.png width 580 height
> 800 supersample 4

> hide #!6.7 models

> show #!6.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class8.png width 580 height
> 800 supersample 4

> hide #!6.8 models

> show #!6.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del9-class9.png width 580 height
> 800 supersample 4

> hide #!6.9 models

> show #!14.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class0.png width 580 height
> 800 supersample 4

> hide #!14.10 models

> show #!14.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class1.png width 580 height
> 800 supersample 4

> hide #!14.1 models

> show #!14.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class2.png width 580 height
> 800 supersample 4

> hide #!14.2 models

> show #!14.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class3.png width 580 height
> 800 supersample 4

> hide #!14.3 models

> show #!14.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class4.png width 580 height
> 800 supersample 4

> hide #!14.4 models

> show #!14.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class5.png width 580 height
> 800 supersample 4

> hide #!14.5 models

> show #!14.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class6.png width 580 height
> 800 supersample 4

> hide #!14.6 models

> show #!14.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class7.png width 580 height
> 800 supersample 4

> hide #!14.7 models

> show #!14.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class8.png width 580 height
> 800 supersample 4

> hide #!14.8 models

> show #!14.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-del10-class9.png width 580 height
> 800 supersample 4

> hide #!14.9 models

> show #!25.10 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class0.png width 580 height
> 800 supersample 4

> hide #!25.10 models

> show #!25.1 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class1.png width 580 height
> 800 supersample 4

> hide #!25.1 models

> show #!25.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class2.png width 580 height
> 800 supersample 4

> hide #!25.2 models

> show #!25.3 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class3.png width 580 height
> 800 supersample 4

> hide #!25.3 models

> show #!25.4 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class4.png width 580 height
> 800 supersample 4

> hide #!25.4 models

> show #!25.5 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class5.png width 580 height
> 800 supersample 4

> hide #!25.5 models

> show #!25.6 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class6.png width 580 height
> 800 supersample 4

> hide #!25.6 models

> show #!25.7 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class7.png width 580 height
> 800 supersample 4

> hide #!25.7 models

> show #!25.8 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class8.png width 580 height
> 800 supersample 4

> hide #!25.8 models

> show #!25.9 models

> save /Users/dalar193/Desktop/H89_U2491/H89-delE-class9.png width 580 height
> 800 supersample 4

> hide #!25.9 models

> transparency #1.2 0 target c

> show #1.2/a:2491,2457,2498,2451,2449-2463,2487-2501

> show #1.2/a:2518 & sidechain

> show #1.2/v:1-5

> show #1.2/a:6231,8885

> color #1.2/a:MG tomato

> color #1.2/a:HOH royal blue

> show #!1.2 models

> save /Users/dalar193/Desktop/H89_U2491/H89-8EMM.png width 580 height 800
> supersample 4

> hide #!1.2 models

> show #!6.4 models

> show #!1.2 models

> hide #!1.2 models

> show #!1.2 models

> hide #!1.2 models

> save /Users/dalar193/wd/deltaRibosomes/figure_H89.cxs

——— End of log from Mon Aug 25 21:17:17 2025 ———

opened ChimeraX session  

> show #!20.1 models

> hide #!6.4 models

> hide #7 models

> close #7

> volume surfaceSmoothing

Missing "surfaceSmoothing" keyword's argument  

> volume style surface

> lighting soft

> volume #20.1 level 0.1

> volume #20.1 level 0.15

> volume #20.1 level 0.17

> volume #20.1 level 0.16

> volume #20.2 level 0.16

> volume #20.3 level 0.16

> volume #20.* level 0.17

> show #!20.4 models

> hide #!20.3 models

> show #!20.3 models

> hide #!20.4 models

> show #!20.2 models

> hide #!20.3 models

> hide #!20.2 models

> show #!23.1 models

> hide #!20.1 models

> show #!23.2 models

> hide #!23.1 models

> volume #23.* unzone

Expected a keyword  

> volume unzone #23.*

> volume transparency 0

> color #20.2 dark grey

> hide #!23.2 models

> show #!23.2 models

> color #20.2 dim gray

> color #23.2 dim gray

> color #23.2 gray

> color #23.2#20.2 gray

> color #23.2#20.2 yellow

> color #23.2 yellow

> volume #23.2 color yellow

> volume #23.2 color red

> show #!20.2 models

> show #!20.1 models

> volume #20.2 color red

> hide #!23.2 models

> volume #20.2 dimTransparency gray

Invalid "dimTransparency" argument: Expected true or false (or 1 or 0)  

> volume #20.2 color dim gray

> volume #20.2 color gray

> hide #!20.2 models

> show #!20.2 models

> show #!23.2 models

> hide #!23.2 models

> show #!23.2 models

> volume #23.2 color gray

> hide #!23.2 models

> show #!23.2 models

> volume #23.2 color silver

> hide #!20.2 models

> hide #!20.1 models

> show #!20.2 models

> hide #!20.2 models

> show #!20.2 models

> show #!20.1 models

> volume color gray

> hide #!20.2 models

> hide #!20.1 models

> show #!23.3 models

> hide #!23.2 models

> show #!23.4 models

> hide #!23.3 models

> show #!25.1 models

> hide #!25.1 models

> show #!25.1 models

> hide #!23.4 models

> hide #!25.1 models

> show #!23.2 models

> hide #!23.2 models

> show #!22.3 models

> hide #!22.3 models

> show #!21.2 models

> hide #!21.2 models

> show #!21.2 models

> hide #!21.2 models

> volume unzone

> show #!22.2 models

> hide #!22.2 models

> show #!21.2 models

> hide #!21.2 models

> show #!20.3 models

> hide #!20.3 models

> show #!20.1 models

> show #!23.1 models

> volume #20.1 color green

> volume #20.1 color cyan

> volume #23.* level 0.08

> volume #23.* level 0.09

> volume #23.* level 0.07

> show #!23.2 models

> hide #!23.1 models

> show #!23.3 models

> hide #!23.2 models

> show #!23.4 models

> hide #!23.3 models

> show #!23.5 models

> hide #!23.4 models

> show #!23.6 models

> hide #!23.5 models

> show #!23.7 models

> hide #!23.6 models

> show #!23.8 models

> hide #!23.7 models

> show #!23.9 models

> hide #!23.8 models

> show #!23.10 models

> hide #!23.9 models

> hide #!23.10 models

> show #!23.6 models

> hide #!23.6 models

> show #!23.5 models

> hide #!23.5 models

> show #!23.4 models

> hide #!23.4 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> show #!23.3 models

> hide #!23.3 models

> show #!12.1 models

> hide #!12.1 models

> show #!12.1 models

> show #!12.2 models

> hide #!12.1 models

> show #!12.3 models

> hide #!12.2 models

> show #!12.4 models

> hide #!12.4 models

> hide #!12.3 models

> show #!12.4 models

> show #!12.5 models

> hide #!12.4 models

> show #!12.6 models

> hide #!12.5 models

> show #!12.7 models

> hide #!12.6 models

> show #!12.8 models

> hide #!12.7 models

> show #!12.9 models

> hide #!12.8 models

> show #!12.10 models

> hide #!12.9 models

> hide #!12.10 models

> show #!10.1 models

> show #!11.1 models

> hide #!11 models

> hide #!11.1 models

> show #!11 models

> show #!10.2 models

> hide #!10.1 models

> show #!10.3 models

> hide #!10.2 models

> hide #!10.3 models

> show #!4.1 models

> volume #4.4 level 0.35

> volume #4.4 level 0.4

> volume #4.1 level 0.35

> volume #4.1 level 0.4

> volume #4.1 level 0.38

> volume #4.1 level 0.36

> volume #4.* level 0.36

> hide #!4.1 models

> show #!4.2 models

> hide #!4.2 models

> show #!4.3 models

> hide #!4.3 models

> show #!4.4 models

> hide #!4.4 models

> show #!4.5 models

> hide #!4.5 models

> show #!4.6 models

> hide #!4.6 models

> show #!4.7 models

> hide #!4.7 models

> show #!4.8 models

> hide #!4.8 models

> show #!4.9 models

> hide #!4.9 models

> show #!4.10 models

> volume #4.* level 0.37

> volume #4.* level 0.38

[Repeated 1 time(s)]

> hide #!4.10 models

> show #!2.1 models

> hide #!2.1 models

> show #!2.2 models

> volume #2.2 level 0.012

> volume #2.2 level 0.011

> volume #2.2 level 0.012

> volume #2.2 level 0.011

> volume #2.2 level 0.012

> show #!2.3 models

> hide #!2.2 models

> volume #2.3 level 0.012

> show #!2.4 models

> hide #!2.3 models

> volume #2.4 level 0.012

> show #!2.5 models

> hide #!2.4 models

> volume #2.5 level 0.012

> show #!2.6 models

> hide #!2.5 models

> volume #2.6 level 0.012

> volume #2.* level 0.012

> volume #4.* level 0.38

> volume #10.* level 0.011

> volume #12.* level 0.35

> volume #20.* level 0.17

> volume #23.* level 0.07

> volume color gray

> windowsize size 500 500

Expected an integer >= 1 or a keyword  

> windowsize 500 500

> view matrix

view matrix camera
-0.21023,0.36217,-0.90809,-389.9,0.33485,0.89936,0.28116,316.33,0.91852,-0.24497,-0.31033,-45.092  
view matrix models
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 
  

> clip list

Using 2 clip planes:  
far offset 93.048, axis -0.908,0.281,-0.310, point 219.6,127.2,163)  
near offset -128.28, axis 0.908,-0.281,0.310, point 18.66,189.7,94.44)  

> ~clip

> clip far 93.048 near -128.28

> save /Users/dalar193/wd/deltaRibosomes/EMDB_previews.cxs

——— End of log from Sun Sep 14 21:47:09 2025 ———

opened ChimeraX session  

> hide #!2.6 models

> hide #!20.1 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J230_APE_0.7Apix.mrc
> id 20.1 name dE_J230_ape

Opened dE_J230_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.137, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J231_AP_0.7Apix.mrc
> id 20.2 name dE_J231_ap

Opened dE_J231_ap as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.132, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J232_PE_0.7Apix.mrc
> id 20.3 name dE_J232_pe

Opened dE_J232_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.147, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J233_E_0.7Apix.mrc
> id 20.4 name dE_J233_e

Opened dE_J233_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.124, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J228_consensus_0.7Apix.mrc
> id 20.5 name dE_J228_conc

Opened dE_J228_conc as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.141, step 2, values float32  

> hide #!20.5 models

> hide #!20 models

> show #!20 models

> show #!20.1 models

> volume step 1

> volume style surface

> volume transparency 0

> volume color gray

> volume unzone

> windowsize 500 500

> view matrix camera
> -0.21023,0.36217,-0.90809,-389.9,0.33485,0.89936,0.28116,316.33,0.91852,-0.24497,-0.31033,-45.092

> ~clip

> clip far 93.048 near -128.28

> volume #2.* level 0.012

> volume #4.* level 0.38

> volume #10.* level 0.011

> volume #12.* level 0.35

> volume #20.* level 0.056

> volume #23.* level 0.07

> volume #23.3 level 0.065

> volume #20.* level 0.56

> volume #20.* level 0.7

> volume #20.* level 0.02

> volume #20.* level 0.07

> close #20.1-5

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J230_APE_0.7Apix.mrc
> id 20.1 name dE_J230_ape

Opened dE_J230_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.137, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J231_AP_0.7Apix.mrc
> id 20.2 name dE_J231_ap

Opened dE_J231_ap as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.132, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J232_PE_0.7Apix.mrc
> id 20.3 name dE_J232_pe

Opened dE_J232_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.147, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J233_E_0.7Apix.mrc
> id 20.4 name dE_J233_e

Opened dE_J233_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.124, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J228_consensus_0.7Apix.mrc
> id 20.5 name dE_J228_conc

Opened dE_J228_conc as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.141, step 2, values float32  

> close #20.*

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J230_APE_0.7Apix.mrc
> id 20.1 name dE_J230_ape

Opened dE_J230_ape as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.137, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J231_AP_0.7Apix.mrc
> id 20.2 name dE_J231_ap

Opened dE_J231_ap as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.132, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J232_PE_0.7Apix.mrc
> id 20.3 name dE_J232_pe

Opened dE_J232_pe as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.147, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J233_E_0.7Apix.mrc
> id 20.4 name dE_J233_e

Opened dE_J233_e as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.124, step 2, values float32  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/deltaE_HOMO_J228_consensus_0.7Apix.mrc
> id 20.5 name dE_J228_conc

Opened dE_J228_conc as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.141, step 2, values float32  

> volume #20.* level 0.056

> volume step 1

> volume style surface

> volume transparency 0

> volume color gray

> volume unzone

> windowsize 500 500

> view matrix camera
> -0.21023,0.36217,-0.90809,-389.9,0.33485,0.89936,0.28116,316.33,0.91852,-0.24497,-0.31033,-45.092

> ~clip

> clip far 93.048 near -128.28

> volume color gray

> hide #!20.5 models

> hide #!20.4 models

> hide #!20.3 models

> hide #!20.2 models

> hide #!20.1 models

> show #!20.5 models

> hide #!20.5 models

> show #!20.5 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/dEJ228_conc.png
> height 500 width 500 supersample 4

Directory "/Users/dalar193/Desktop/deltaRibosome_map_image_EMDB" does not
exist  

> show #!20.5 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/dEJ228_conc.png
> height 500 width 500 supersample 4

> hide #!20.5 models

> show #!20.1 models

> save /Users/dalar193/wd/deltaRibosomes/EMDB_previews.cxs

——— End of log from Sun Oct 12 20:03:57 2025 ———

opened ChimeraX session  

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta9_refine3d_job169_consensus_0.7Apix.mrc
> id 2.7 name d9_j169_conc

Opened d9_j169_conc as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0267, step 2, values float32  

> hide #!20.1 models

> volume #2.7 step 1

> volume #2.7 step 1 level 0.015

> show #!20.5 models

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> volume #2.7 step 1 level 0.01

> show #!20.5 models

> hide #!20.5 models

> show #!20.5 models

> hide #!20.5 models

> show #!20.5 models

> hide #!20.5 models

> volume step 1

> volume style surface

> volume transparency 0

> volume color gray

> volume unzone

> windowsize 500 500

> view matrix camera
> -0.21023,0.36217,-0.90809,-389.9,0.33485,0.89936,0.28116,316.33,0.91852,-0.24497,-0.31033,-45.092

> ~clip

> clip far 93.048 near -128.28

> hide #!2.7 models

> show #!2.7 models

> show #!20.5 models

> hide #!2.7 models

> show #!2.7 models

> hide #!20.5 models

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> show #!4.6 models

> volume #2.* level 0.012

> hide #!4.6 models

> show #!2.7 models

> show #!2.1 models

> hide #!2.1 models

> volume #2.* level 0.01

> hide #!2.7 models

> show #!2.7 models

> show #!20.5 models

> hide #!2.7 models

> show #!2.7 models

> hide #!2.7 models

> show #!2.7 models

> volume #2.* level 0.012

> hide #!2.7 models

> show #!2.7 models

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> show #!20.5 models

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> show #!20.5 models

> hide #!20.5 models

> volume #2.* level 0.012

> volume #2.* level 0.01

> show #!20.5 models

> hide #!20.5 models

> show #!20.5 models

> hide #!20.5 models

> volume #2.* level 0.01

> volume #4.* level 0.38

> volume #10.* level 0.011

> volume #12.* level 0.35

> volume #20.* level 0.056

> volume #23.* level 0.07

> volume #23.3 level 0.065

> show #!12.1 models

> hide #!2.2 models

> hide #!12.1 models

> show #!12.1 models

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> show #!12.6 models

> hide #!12.5 models

> show #!12.7 models

> hide #!12.6 models

> show #!12.8 models

> hide #!12.7 models

> show #!12.9 models

> hide #!12.8 models

> show #!12.10 models

> hide #!12.9 models

> hide #!12.10 models

> volume #23.3 level 0.065

> show #!2.7 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9j169_conc.png
> height 500 width 500 supersample 4

> hide #!2.7 models

> show #!4.10 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J83_c0.png
> height 500 width 500 supersample 4

> hide #!4.10 models

> show #!4.1 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J84_c1.png
> height 500 width 500 supersample 4

> hide #!4.1 models

> show #!4.2 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J85_c2.png
> height 500 width 500 supersample 4

> hide #!4.2 models

> show #!4.3 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J86_c3.png
> height 500 width 500 supersample 4

> hide #!4.3 models

> show #!4.4 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J87_c4.png
> height 500 width 500 supersample 4

> hide #!4.4 models

> show #!4.5 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J88_c5.png
> height 500 width 500 supersample 4

> hide #!4.5 models

> show #!4.6 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J89_c6.png
> height 500 width 500 supersample 4

> hide #!4.6 models

> show #!4.7 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J90_c7.png
> height 500 width 500 supersample 4

> hide #!4.7 models

> show #!4.8 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J91_c8.png
> height 500 width 500 supersample 4

> hide #!4.8 models

> show #!4.9 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d9J92_c9.png
> height 500 width 500 supersample 4

> hide #!4.9 models

> show #!10.4 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10j064_conc.png
> height 500 width 500 supersample 4

> hide #!10.4 models

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/delta10_refine3d_job064_consensus_0.7Apix.mrc
> id 10.4 name d10_j064_conc

Opened d10_j064_conc as #7, grid size 391,421,391, pixel 0.7,0.7,0.7, shown at
level 0.0248, step 2, values float32  

> volume #10.* level 0.011

> volume step 1

> volume style surface

> volume transparency 0

> volume color gray

> hide #!10.4 models

> show #!10.4 models

> show #!2.7 models

> hide #!2.7 models

> show #!2.7 models

> hide #!2.7 models

> volume #10.4 level 0.010

> volume #10.* level 0.010

> show #!10.3 models

> hide #!10.4 models

> show #!10.2 models

> hide #!10.3 models

> show #!10.1 models

> hide #!10.2 models

> hide #!10.1 models

> show #!10.4 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10j064_conc.png
> height 500 width 500 supersample 4

> hide #!10.4 models

> volume #10.* level 0.009

> show #!10.4 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10j064_conc.png
> height 500 width 500 supersample 4

> hide #!10.4 models

> show #!12.10 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J53_c0.png
> height 500 width 500 supersample 4

> hide #!12.10 models

> show #!12.1 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J54_c1.png
> height 500 width 500 supersample 4

> hide #!12.1 models

> show #!12.2 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J55_c2.png
> height 500 width 500 supersample 4

> hide #!12.2 models

> show #!12.3 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J56_c3.png
> height 500 width 500 supersample 4

> hide #!12.3 models

> show #!12.4 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J57_c4.png
> height 500 width 500 supersample 4

> hide #!12.4 models

> show #!12.5 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J58_c5.png
> height 500 width 500 supersample 4

> hide #!12.5 models

> show #!12.6 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J59_c6.png
> height 500 width 500 supersample 4

> hide #!12.6 models

> show #!12.7 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J60_c7.png
> height 500 width 500 supersample 4

> hide #!12.7 models

> show #!12.8 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J61_c8.png
> height 500 width 500 supersample 4

> hide #!12.8 models

> show #!12.9 models

> save /Users/dalar193/Desktop/deltaRibosome_map_image_EMDB/d10J62_c9.png
> height 500 width 500 supersample 4

> hide #!12.9 models

> save /Users/dalar193/wd/deltaRibosomes/EMDB_previews.cxs

——— End of log from Mon Oct 20 14:51:37 2025 ———

> view name session-start

opened ChimeraX session  

> show #!1.2 models

> view

> open
> /Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8emm_LSQ-23S.pdb

Summary of feedback from opening
/Users/dalar193/wd/deltaRibosomes/aligned_maps_7k00scale/8emm_LSQ-23S.pdb  
---  
warnings | PDB SEQRES record for chain B is incomplete. Ignoring input sequence records as basis for sequence.  
PDB SEQRES record for chain Y is incomplete. Ignoring input sequence records
as basis for sequence.  
PDB SEQRES record for chain Z is incomplete. Ignoring input sequence records
as basis for sequence.  
  
Chain information for 8emm_LSQ-23S.pdb #7  
---  
Chain | Description  
0 | No description available  
1 | No description available  
2 | No description available  
3 | No description available  
4 | No description available  
A | No description available  
B | No description available  
C | No description available  
D | No description available  
E | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
K | No description available  
L | No description available  
M | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
R | No description available  
S | No description available  
T | No description available  
U | No description available  
X | No description available  
Y Z | No description available  
a | No description available  
b | No description available  
c | No description available  
d | No description available  
e | No description available  
f | No description available  
g | No description available  
h | No description available  
i | No description available  
j | No description available  
k | No description available  
l | No description available  
m | No description available  
n | No description available  
o | No description available  
p | No description available  
q | No description available  
r | No description available  
s | No description available  
t | No description available  
u | No description available  
v | No description available  
w | No description available  
x | No description available  
y | No description available  
z | No description available  
  

> style #!7#!1.2 stick

Changed 291470 atom styles  

> hide #!7#!1.2 atoms

> show #!7#!1.2 atoms

> hide #!7#!1.2 cartoons

> hide #!1.2 models

> show #!1.2 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> hide #!7 models

> show #!7 models

> open 8emm fromDatabase pdb format mmcif

Summary of feedback from opening 8emm fetched from pdb  
---  
note | Fetching compressed mmCIF 8emm from http://files.rcsb.org/download/8emm.cif  
  
8emm title:  
Composite 70S ribosome structure for "Atomistic simulations of the E. coli
ribosome provide selection criteria for translationally active substrates
[more info...]  
  
Chain information for 8emm #8  
---  
Chain | Description | UniProt  
0 | 50S ribosomal protein L33 | F4NQ61_ECOLX 1-55  
1 | 50S ribosomal protein L34 | RL34_ECO45 1-46  
2 | 50S ribosomal protein L35 | RL35_ECOLI 1-65  
3 | 50S ribosomal protein L36 | A0A0E2L017_ECOU3 1-38  
4 | 50S ribosomal protein L31 | RL31_ECOLI 1-70  
A | 16S rRNA |   
B | 30S ribosomal protein S2 | C3TPN2_ECOLX 1-241  
C | 30S ribosomal protein S3 | RS3_ECO45 1-233  
D | 30S ribosomal protein S4 | RS4_ECOLI 1-206  
E | 30S ribosomal protein S5 | RS5_ECOLI 1-167  
F | 30S ribosomal protein S6 | RS6_ECOLI 1-135  
G | 30S ribosomal protein S7 | RS7_ECOLI 1-179  
H | 30S ribosomal protein S8 | D7XKZ3_ECOLX 1-130  
I | 30S ribosomal protein S9 | A0A1X3LT86_ECOLX 1-130  
J | 30S ribosomal protein S10 | V0ANK5_ECOLX 1-103  
K | 30S ribosomal protein S11 | A0A0H3PWX2_ECO5C 1-129  
L | 30S ribosomal protein S12 | A0A0F1AUC4_9ENTR 1-124  
M | 30S ribosomal protein S13 | A0A7U9IV78_ECOLX 1-118  
N | 30S ribosomal protein S14 | U9Y6H3_ECOLX 1-101  
O | 30S ribosomal protein S15 | D8EB41_ECOLX 1-89  
P | 30S ribosomal protein S16 | C3SYP2_ECOLX 1-82  
Q | 30S ribosomal protein S17 | A0A829A8C6_ECOLX 1-84  
R | 30S ribosomal protein S18 | A0A0E2KXL3_ECOU3 1-75  
S | 30S ribosomal protein S19 | S1EA57_ECOLX 1-92  
T | 30S ribosomal protein S20 | C3TRH7_ECOLX 1-87  
U | 30S ribosomal protein S21 | A0A0E2L2J1_ECOU3 1-71  
X | mRNA |   
Y Z | Met-NH-tRNA |   
a | 23S rRNA |   
b | 5S rRNA |   
c | 50S ribosomal protein L2 | RL2_ECOLI 1-273  
d | 50S ribosomal protein L3 | U9Y9G2_ECOLX 1-209  
e | 50S ribosomal protein L4 | A0A7U9FY55_ECOLX 1-201  
f | 50S ribosomal protein L5 | A0A829CFT8_ECOLX 1-179  
g | 50S ribosomal protein L6 | A0A862ZNS7_ECOLX 1-177  
h | 50S ribosomal protein L9 | V0YZK9_ECOLX 1-149  
i | 50S ribosomal protein L13 | S1EW51_ECOLX 1-142  
j | 50S ribosomal protein L14 | S1NW45_ECOLX 1-123  
k | 50S ribosomal protein L15 | A0A037Y8L6_ECOLX 1-144  
l | 50S ribosomal protein L16 | A0A7U9B8R8_ECOLX 1-136  
m | 50S ribosomal protein L17 | A0A1X3LC97_ECOLX 1-127  
n | 50S ribosomal protein L18 | E3PKY8_ECOH1 1-117  
o | 50S ribosomal protein L19 | V0AJX1_ECOLX 1-115  
p | 50S ribosomal protein L20 | RL20_ECO45 1-118  
q | Ribosomal protein L21 | A0A829CSJ4_ECOLX 1-103  
r | 50S ribosomal protein L22 | RL22_ECOLI 1-110  
s | 50S ribosomal protein L23 | A0A829CFV1_ECOLX 1-100  
t | 50S ribosomal protein L24 | A0A1X3KWX7_ECOLX 1-104  
u | 50S ribosomal protein L25 | D7XH79_ECOLX 1-94  
v | 50S ribosomal protein L27 | RL27_ECOLI 1-85  
w | 50S ribosomal protein L28 | A0A1X3JA73_ECOLX 1-78  
x | 50S ribosomal protein L29 | D6IEL0_ECOLX 1-63  
y | 50S ribosomal protein L30 | V0YKA9_ECOLX 1-59  
z | 50S ribosomal protein L32 | D7XI28_ECOLX 1-57  
  
Non-standard residues in 8emm #8  
---  
K — potassium ion  
MET — methionine  
MG — magnesium ion  
MS6 — (2S)-2-amino-4-(methylsulfanyl)butane-1-thiol  
PAR — paromomycin (paromomycin I; amminosidin; catenulin; crestomycin;
monomycin A; neomycin E)  
SPD — spermidine (N-(2-amino-propyl)-1,4-diaminobutane; Pa(34))  
SPM — spermine  
ZN — zinc ion  
  

> style #!7-8#!1.2 stick

Changed 437205 atom styles  

> mmaker #8/a to #1.2/a

Using Nucleic matrix instead of BLOSUM-62 for matching  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | Nucleic  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 8emm, chain a (#1.2) with 8emm, chain a (#8), sequence alignment
score = 10743.2  
RMSD between 2753 pruned atom pairs is 0.268 angstroms; (across all 2753
pairs: 0.268)  
  

> hide #1.2 target ac

> color #1.2 white

> color #1.2/a:2057-2065 #7EAAEE

> color #1.2/a:2445-2454 #EDD670

> color #1.2/a:2499-2508 light green

> color #1.2/a:2580-2588 light salmon

> color #1.2/a:2606-2611 #B49BE6

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> nucleotides tube/slab

> nucleotides :H2U fill

> hide #!8 models

> hide #!7 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> view

> lighting gentle

> cartoon suppressBackboneDisplay true

Computing secondary structure  

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> hide #1.2 target ac

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> cartoon suppressBackboneDisplay true

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

[Repeated 1 time(s)]

> hide #1.2

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> hide #1.2

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> hide #1.2 target ac

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> cartoon suppressBackboneDisplay false

> hide #1.2 target ac

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> cartoon suppressBackboneDisplay false

> hide #1.2 target ac

> show #1.2/a:2057-2065,2445-2454,2499-2508,2580-2588,2606-2611 target ac

> hide #1.2 target ac

> show #1.2/b:30-50 target ac

> view

> hide #1.2 target ac

> show #1.2/c:30-50 target ac

> view

> lighting simple

> cartoon suppressBackboneDisplay true




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.9
Locale: UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,9
      Model Number: Z17G002M2KS/A
      Chip: Apple M2 Pro
      Total Number of Cores: 10 (6 performance and 4 efficiency)
      Memory: 32 GB
      System Firmware Version: 11881.140.96
      OS Loader Version: 8422.141.2.700.1

Software:

    System Software Overview:

      System Version: macOS 13.7.8 (22H730)
      Kernel Version: Darwin 22.6.0
      Time since boot: 41 days, 35 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        EA275UHD:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 3840 x 2160 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        EA244WMi:
          Resolution: 1200 x 1920
          UI Looks like: 1200 x 1920 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: 90


Installed Packages:
    aiohappyeyeballs: 2.6.1
    aiohttp: 3.13.1
    aiosignal: 1.4.0
    alabaster: 1.0.0
    annotated-types: 0.7.0
    anyio: 4.12.1
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.1
    attrs: 25.4.0
    babel: 2.17.0
    beautifulsoup4: 4.13.5
    blockdiag: 3.0.0
    blosc2: 3.12.2
    build: 1.3.0
    certifi: 2025.7.14
    cftime: 1.6.5
    charset-normalizer: 3.4.4
    ChimeraX-AddCharge: 1.5.20
    ChimeraX-AddH: 2.2.8
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.6.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 3.1.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Animations: 1.0
    ChimeraX-Aniso: 1.3.2
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.61.4
    ChimeraX-AtomicLibrary: 14.2.1
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.3
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-Boltz: 1.1
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.6.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.5
    ChimeraX-ChemGroup: 2.0.2
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.3.0
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.11.1
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.5
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.4
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.4
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5.3
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.7.3
    ChimeraX-Label: 1.2
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.2
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.2.2
    ChimeraX-MCopy: 1.0
    ChimeraX-MCPServer: 0.1.0
    ChimeraX-MDcrds: 2.17.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-Minimize: 1.3.2
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.16
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.22
    ChimeraX-ModelPanel: 1.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0.1
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.15.2
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.12
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.5
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.4
    ChimeraX-ProfileGrids: 1.4.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.5
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.3
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.2
    ChimeraX-Scenes: 0.3.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.3
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.10
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.17.3
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.2
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.49.1
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDock: 1.5.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.5
    ChimeraX-Zone: 1.0.1
    click: 8.3.1
    colorama: 0.4.6
    comm: 0.2.3
    contourpy: 1.3.3
    coverage: 7.13.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.1.4
    debugpy: 1.8.19
    decorator: 5.2.1
    docutils: 0.21.2
    executing: 2.2.1
    filelock: 3.19.1
    fonttools: 4.61.1
    frozenlist: 1.8.0
    funcparserlib: 2.0.0a0
    glfw: 2.10.0
    grako: 3.16.5
    h11: 0.16.0
    h5py: 3.15.1
    html2text: 2025.4.15
    httpcore: 1.0.9
    httpx: 0.28.1
    httpx-sse: 0.4.3
    idna: 3.11
    ihm: 2.2
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.3.0
    ipykernel: 6.30.1
    ipython: 9.5.0
    ipython_pygments_lexers: 1.1.1
    ipywidgets: 8.1.8
    jedi: 0.19.2
    Jinja2: 3.1.6
    jsonschema: 4.26.0
    jsonschema-specifications: 2025.9.1
    jupyter_client: 8.6.3
    jupyter_core: 5.9.1
    jupyterlab_widgets: 3.0.16
    kiwisolver: 1.4.9
    line_profiler: 5.0.0
    lxml: 6.0.2
    lz4: 4.3.2
    Markdown: 3.8.2
    MarkupSafe: 3.0.3
    matplotlib: 3.10.7
    matplotlib-inline: 0.2.1
    mcp: 1.18.0
    msgpack: 1.1.1
    multidict: 6.7.0
    ndindex: 1.10.1
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.14.1
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 25.0
    ParmEd: 4.2.2
    parso: 0.8.5
    pep517: 0.13.1
    pexpect: 4.9.0
    pickleshare: 0.7.5
    pillow: 11.3.0
    pip: 25.2
    pkginfo: 1.12.1.2
    platformdirs: 4.5.1
    pluggy: 1.6.0
    prompt_toolkit: 3.0.52
    propcache: 0.4.1
    psutil: 7.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pybind11: 3.0.1
    pycollada: 0.8
    pydantic: 2.12.5
    pydantic-settings: 2.12.0
    pydantic_core: 2.41.5
    pydicom: 2.4.4
    Pygments: 2.18.0
    pynmrstar: 3.3.6
    pynrrd: 1.0.0
    PyOpenGL: 3.1.10
    PyOpenGL-accelerate: 3.1.10
    pyopenxr: 1.1.4501
    pyparsing: 3.3.2
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.9.1
    PyQt6-Qt6: 6.9.2
    PyQt6-WebEngine-commercial: 6.9.0
    PyQt6-WebEngine-Qt6: 6.9.2
    PyQt6_sip: 13.10.2
    pytest: 9.0.2
    pytest-cov: 7.0.0
    python-dateutil: 2.9.0.post0
    python-dotenv: 1.2.1
    python-multipart: 0.0.21
    pyzmq: 27.1.0
    qtconsole: 5.7.0
    QtPy: 2.4.3
    qtshim: 1.2
    RandomWords: 0.4.0
    referencing: 0.37.0
    requests: 2.32.5
    roman-numerals: 4.1.0
    roman-numerals-py: 4.1.0
    rpds-py: 0.30.0
    scipy: 1.14.0
    setuptools: 80.9.0
    sfftk-rw: 0.8.1
    six: 1.17.0
    snowballstemmer: 3.0.1
    sortedcontainers: 2.4.0
    soupsieve: 2.8.3
    Sphinx: 8.2.3
    sphinx-autodoc-typehints: 3.2.0
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    sse-starlette: 3.2.0
    stack-data: 0.6.3
    starlette: 0.52.1
    superqt: 0.7.6
    tables: 3.10.2
    tcia_utils: 1.5.1
    tifffile: 2025.3.13
    tinyarray: 1.2.5
    tornado: 6.5.4
    traitlets: 5.14.3
    typing-inspection: 0.4.2
    typing_extensions: 4.15.0
    urllib3: 2.6.3
    uvicorn: 0.40.0
    wcwidth: 0.3.2
    webcolors: 24.11.1
    wheel: 0.45.1
    wheel-filename: 1.4.2
    widgetsnbextension: 4.0.15
    yarl: 1.22.0