![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 6 years ago
Closed 6 years ago
#1995 closed defect (duplicate)
Crash in Pseudobond destructor
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Darwin-17.7.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-06-01)
Description
Last time you used ChimeraX it crashed.
I tried to show cartoons for a large structure
Process: ChimeraX [85308]
Path: /Users/USER/*/ChimeraX_Daily-030619.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 0.91.0 (0.91.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [85308]
User ID: 1047
Date/Time: 2019-06-05 14:44:01.922 +0200
OS Version: Mac OS X 10.13.6 (17G7024)
Report Version: 12
Anonymous UUID: 6B85E5B3-F91F-35AD-E3C0-B9736BF666FC
Time Awake Since Boot: 790000 seconds
System Integrity Protection: enabled
Crashed Thread: 9 Chrome_IOThread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Thread 0:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_platform.dylib 0x00007fff55aca4c9 _platform_memmove$VARIANT$Nehalem + 201
1 libatomstruct.dylib 0x0000000118eac62c atomstruct::Pseudobond::~Pseudobond() + 156
2 libatomstruct.dylib 0x0000000118eacbae atomstruct::Pseudobond::~Pseudobond() + 14
3 libatomstruct.dylib 0x0000000118ea0bf2 atomstruct::PBGroup::_check_destroyed_atoms(std::__1::set, std::__1::allocator >&, std::__1::set, std::__1::allocator > const&) + 322
4 libatomstruct.dylib 0x0000000118ea0e85 atomstruct::StructurePBGroup::check_destroyed_atoms(std::__1::set, std::__1::allocator > const&) + 53
5 libatomstruct.dylib 0x0000000118ea9060 atomstruct::Proxy_PBGroup::check_destroyed_atoms(std::__1::set, std::__1::allocator > const&) + 32
6 libatomstruct.dylib 0x0000000118e65fa8 atomstruct::DestructionCoordinator::finalizing_destruction(void*) + 760
7 libatomstruct.dylib 0x0000000118edb1d7 atomstruct::Structure::delete_atoms(std::__1::vector > const&) + 503
8 libmolc.dylib 0x0000000118da3008 atom_delete + 424
9 _ctypes.cpython-37m-darwin.so 0x000000010b011ebf ffi_call_unix64 + 79
10 _ctypes.cpython-37m-darwin.so 0x000000010b01271a ffi_call + 858
11 _ctypes.cpython-37m-darwin.so 0x000000010b00d813 _ctypes_callproc + 787
12 _ctypes.cpython-37m-darwin.so 0x000000010b007583 PyCFuncPtr_call + 1043
13 org.python.python 0x00000001004f575f _PyObject_FastCallKeywords + 559
14 org.python.python 0x00000001005bf26a call_function + 714
15 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707
16 org.python.python 0x00000001004f5df3 function_code_fastcall + 195
17 org.python.python 0x00000001005bf271 call_function + 721
18 org.python.python 0x00000001005b78c0 _PyEval_EvalFrameDefault + 5536
19 org.python.python 0x00000001004f5df3 function_code_fastcall + 195
20 org.python.python 0x00000001005bf271 call_function + 721
21 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707
22 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
23 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450
24 org.python.python 0x00000001005b7c45 _PyEval_EvalFrameDefault + 6437
25 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
26 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230
27 org.python.python 0x00000001005bf271 call_function + 721
28 org.python.python 0x00000001005b78c0 _PyEval_EvalFrameDefault + 5536
29 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
30 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450
31 org.python.python 0x00000001004f6886 _PyObject_Call_Prepend + 150
32 org.python.python 0x00000001004f5a58 PyObject_Call + 136
33 QtCore.so 0x000000010e09c828 PyQtSlot::call(_object*, _object*) const + 40
34 QtCore.so 0x000000010e09c727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391
35 QtCore.so 0x000000010e09d268 PyQtSlotProxy::unislot(void**) + 88
36 QtCore.so 0x000000010e09d1da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
37 QtCore 0x000000010dc043d6 QMetaObject::activate(QObject*, int, int, void**) + 2230
38 QtCore 0x000000010dc046aa QMetaObject::activate(QObject*, int, int, void**) + 2954
39 QtWidgets 0x000000010d0a712e QWidgetLineControl::processKeyEvent(QKeyEvent*) + 334
40 QtWidgets 0x000000010d09dd72 QLineEdit::keyPressEvent(QKeyEvent*) + 34
41 QtWidgets 0x000000010cf8acfb QWidget::event(QEvent*) + 587
42 QtWidgets 0x000000010d09d187 QLineEdit::event(QEvent*) + 599
43 QtWidgets 0x000000010d0651f6 QComboBox::keyPressEvent(QKeyEvent*) + 838
44 QtWidgets.so 0x000000010cc038f9 meth_QComboBox_keyPressEvent(_object*, _object*) + 137
45 org.python.python 0x00000001004f63ab _PyMethodDef_RawFastCallKeywords + 251
46 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44
47 org.python.python 0x00000001005bf209 call_function + 617
48 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562
49 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
50 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450
51 org.python.python 0x00000001004f6886 _PyObject_Call_Prepend + 150
52 org.python.python 0x00000001004f5a58 PyObject_Call + 136
53 sip.so 0x000000010df6c34a call_method + 76
54 sip.so 0x000000010df68284 sip_api_call_procedure_method + 152
55 QtWidgets.so 0x000000010cb086d7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103
56 QtWidgets 0x000000010cf8acfb QWidget::event(QEvent*) + 587
57 QtWidgets 0x000000010d064b25 QComboBox::event(QEvent*) + 373
58 QtWidgets.so 0x000000010cb07be0 sipQComboBox::event(QEvent*) + 192
59 QtWidgets 0x000000010cf50b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
60 QtWidgets 0x000000010cf51feb QApplication::notify(QObject*, QEvent*) + 715
61 QtWidgets.so 0x000000010cb22f8a sipQApplication::notify(QObject*, QEvent*) + 234
62 QtCore 0x000000010dbd3a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
63 QtWidgets 0x000000010cfa9c96 0x10cf3f000 + 437398
64 QtWidgets 0x000000010cf50b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306
65 QtWidgets 0x000000010cf51e9f QApplication::notify(QObject*, QEvent*) + 383
66 QtWidgets.so 0x000000010cb22f8a sipQApplication::notify(QObject*, QEvent*) + 234
67 QtCore 0x000000010dbd3a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159
68 QtGui 0x000000010d51cc35 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 165
69 QtGui 0x000000010d50228b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155
70 QtGui 0x000000010d4fe060 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 576
71 libqcocoa.dylib 0x00000001162747db 0x116253000 + 137179
72 libqcocoa.dylib 0x00000001162749a8 0x116253000 + 137640
73 com.apple.AppKit 0x00007fff2b6b943d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 5040
74 com.apple.AppKit 0x00007fff2b6b7c70 -[NSWindow(NSEventRouting) sendEvent:] + 497
75 libqcocoa.dylib 0x0000000116262377 0x116253000 + 62327
76 libqcocoa.dylib 0x0000000116261c34 0x116253000 + 60468
77 com.apple.AppKit 0x00007fff2b519236 -[NSApplication(NSEvent) sendEvent:] + 2462
78 libqcocoa.dylib 0x000000011627dd5a 0x116253000 + 175450
79 com.apple.AppKit 0x00007fff2ad798b5 -[NSApplication run] + 812
80 libqcocoa.dylib 0x000000011627a53d 0x116253000 + 161085
81 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418
82 QtCore 0x000000010dbd4172 QCoreApplication::exec() + 402
83 QtWidgets.so 0x000000010cc10dc2 meth_QApplication_exec_(_object*, _object*) + 82
84 org.python.python 0x00000001004f63ab _PyMethodDef_RawFastCallKeywords + 251
85 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44
86 org.python.python 0x00000001005bf209 call_function + 617
87 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562
88 org.python.python 0x00000001004f5df3 function_code_fastcall + 195
89 org.python.python 0x00000001005bf271 call_function + 721
90 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562
91 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
92 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230
93 org.python.python 0x00000001005bf271 call_function + 721
94 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707
95 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
96 org.python.python 0x00000001005b6280 PyEval_EvalCode + 48
97 org.python.python 0x00000001005b39c3 builtin_exec + 563
98 org.python.python 0x00000001004f655e _PyMethodDef_RawFastCallKeywords + 686
99 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44
100 org.python.python 0x00000001005bf209 call_function + 617
101 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707
102 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
103 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230
104 org.python.python 0x00000001005bf271 call_function + 721
105 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707
106 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721
107 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450
108 org.python.python 0x00000001006144c3 pymain_run_module + 147
109 org.python.python 0x00000001006132d6 pymain_main + 4262
110 org.python.python 0x0000000100612223 Py_Main + 51
111 edu.ucsf.cgl.ChimeraX 0x00000001004c9dcb main + 587
112 libdyld.dylib 0x00007fff557bc015 start + 1
Thread 1:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 com.apple.AppKit 0x00007fff2aec1fc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 2:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5590e09a poll + 10
1 QtCore 0x000000010dc26b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010dc281b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010f20bc4a 0x10f1ea000 + 138314
5 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
6 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
7 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
8 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
9 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 3:: DnsConfigService
0 libsystem_kernel.dylib 0x00007fff5590dbea kevent + 10
1 QtWebEngineCore 0x0000000110318469 0x10f1ea000 + 18015337
2 QtWebEngineCore 0x000000011031575d 0x10f1ea000 + 18003805
3 QtWebEngineCore 0x000000010fe0999f 0x10f1ea000 + 12712351
4 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
5 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
6 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
7 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
8 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 4:: Chrome_DBThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010f4d7958 0x10f1ea000 + 3070296
10 QtWebEngineCore 0x000000010f4d7d1f 0x10f1ea000 + 3071263
11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 5:: Chrome_FileThread
0 libsystem_kernel.dylib 0x00007fff5590dbea kevent + 10
1 QtWebEngineCore 0x0000000110318469 0x10f1ea000 + 18015337
2 QtWebEngineCore 0x000000011031575d 0x10f1ea000 + 18003805
3 QtWebEngineCore 0x000000010fe0999f 0x10f1ea000 + 12712351
4 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
5 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
6 QtWebEngineCore 0x000000010f4d79d8 0x10f1ea000 + 3070424
7 QtWebEngineCore 0x000000010f4d7d2f 0x10f1ea000 + 3071279
8 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
9 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
10 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
11 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
12 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 6:: Chrome_FileUserBlockingThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010f4d7a58 0x10f1ea000 + 3070552
10 QtWebEngineCore 0x000000010f4d7d3f 0x10f1ea000 + 3071295
11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 7:: Chrome_ProcessLauncherThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010f4d7ad8 0x10f1ea000 + 3070680
10 QtWebEngineCore 0x000000010f4d7d4c 0x10f1ea000 + 3071308
11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 8:: Chrome_CacheThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010f4d7b58 0x10f1ea000 + 3070808
10 QtWebEngineCore 0x000000010f4d7d59 0x10f1ea000 + 3071321
11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 9 Crashed:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5590cb66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff55ad7080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff5581a6fe raise + 26
3 libsystem_platform.dylib 0x00007fff55acaf5a _sigtramp + 26
4 ??? 0xffffffff00000000 0 + 18446744069414584320
5 QtWebEngineCore 0x000000010fe8e16e 0x10f1ea000 + 13255022
6 QtWebEngineCore 0x000000010fe90045 0x10f1ea000 + 13262917
7 QtWebEngineCore 0x000000010fe216af 0x10f1ea000 + 12809903
8 QtWebEngineCore 0x000000010fe052fe 0x10f1ea000 + 12694270
9 QtWebEngineCore 0x000000010f4d86cc 0x10f1ea000 + 3073740
10 QtWebEngineCore 0x000000011091e015 0x10f1ea000 + 24330261
11 QtWebEngineCore 0x0000000111180985 0x10f1ea000 + 33122693
12 QtWebEngineCore 0x000000011117a25e 0x10f1ea000 + 33096286
13 QtWebEngineCore 0x00000001111698d6 0x10f1ea000 + 33028310
14 QtWebEngineCore 0x0000000111157c72 0x10f1ea000 + 32955506
15 QtWebEngineCore 0x0000000111158fb1 0x10f1ea000 + 32960433
16 QtWebEngineCore 0x000000010fe096ae 0x10f1ea000 + 12711598
17 QtWebEngineCore 0x0000000110315995 0x10f1ea000 + 18004373
18 QtWebEngineCore 0x000000010fe0999f 0x10f1ea000 + 12712351
19 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
20 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
21 QtWebEngineCore 0x000000010f4d7bd8 0x10f1ea000 + 3070936
22 QtWebEngineCore 0x000000010f4d7d66 0x10f1ea000 + 3071334
23 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
24 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
25 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
26 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
27 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 10:: BrowserBlockingWorker1/73475
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010fe59c1f 0x10f1ea000 + 13040671
3 QtWebEngineCore 0x000000010fe592e6 0x10f1ea000 + 13038310
4 QtWebEngineCore 0x000000010fe5d18d 0x10f1ea000 + 13054349
5 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 11:: IndexedDB
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
10 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
11 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 12:: CompositorTileWorker1/72195
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x00000001109f8cf8 0x10f1ea000 + 25226488
3 QtWebEngineCore 0x000000010fe5d18d 0x10f1ea000 + 13054349
4 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
5 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 13:: AudioThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
10 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
11 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 14:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487
5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303
6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660
7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
9 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
10 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
11 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
12 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
13 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 15:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5590dbea kevent + 10
1 QtWebEngineCore 0x0000000110318469 0x10f1ea000 + 18015337
2 QtWebEngineCore 0x000000011031575d 0x10f1ea000 + 18003805
3 QtWebEngineCore 0x000000010fe0999f 0x10f1ea000 + 12712351
4 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
5 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
6 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
7 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
8 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5590e09a poll + 10
1 QtCore 0x000000010dc26b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010dc281b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010f20bc4a 0x10f1ea000 + 138314
5 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
6 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
7 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
8 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
9 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 17:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 QtCore 0x000000010da1558b 0x10d9e8000 + 185739
3 QtCore 0x000000010da15522 QWaitCondition::wait(QMutex*, unsigned long) + 162
4 QtWidgets 0x000000010d176862 0x10cf3f000 + 2324578
5 QtCore 0x000000010da13fbf 0x10d9e8000 + 180159
6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5590e09a poll + 10
1 QtCore 0x000000010dc26b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544
2 QtCore 0x000000010dc281b9 QEventDispatcherUNIX::processEvents(QFlags) + 857
3 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418
4 QtWebEngineCore 0x000000010f20bc4a 0x10f1ea000 + 138314
5 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966
6 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481
7 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019
8 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
9 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000101392a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000101392a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x0000000101392a3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 22:: BrowserBlockingWorker2/165999
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000010fe59c1f 0x10f1ea000 + 13040671
3 QtWebEngineCore 0x000000010fe592e6 0x10f1ea000 + 13038310
4 QtWebEngineCore 0x000000010fe5d18d 0x10f1ea000 + 13054349
5 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111
6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 23:: QFileInfoGatherer
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 QtCore 0x000000010da1558b 0x10d9e8000 + 185739
3 QtCore 0x000000010da15522 QWaitCondition::wait(QMutex*, unsigned long) + 162
4 QtWidgets 0x000000010d176862 0x10cf3f000 + 2324578
5 QtCore 0x000000010da13fbf 0x10d9e8000 + 180159
6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 24:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001831efa3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 25:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001831efa3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 26:
0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732
2 libopenblasp-r0.3.5.dev.dylib 0x00000001831efa3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13
Thread 27:
0 libsystem_pthread.dylib 0x00007fff55ad3bdc start_wqthread + 0
1 ??? 0x0001000000000000 0 + 281474976710656
Thread 28:
0 libsystem_pthread.dylib 0x00007fff55ad3bdc start_wqthread + 0
1 ??? 0x0000608001a66240 0 + 106102899761728
Thread 9 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000070000f07d000 rcx: 0x000070000f07b3c8 rdx: 0x0000000000000000
rdi: 0x0000000000012003 rsi: 0x000000000000000b rbp: 0x000070000f07b400 rsp: 0x000070000f07b3c8
r8: 0x000070000f07b8c8 r9: 0x0000000000000061 r10: 0x000070000f07d048 r11: 0x0000000000000287
r12: 0x0000000000012003 r13: 0x000070000f07ba70 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5590cb66 rfl: 0x0000000000000286 cr2: 0x0000000101fe1000
Logical CPU: 0
Error Code: 0x02000170
Trap Number: 133
Binary Images:
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0x7fff55ab4000 - 0x7fff55abeffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff55abf000 - 0x7fff55ac8ff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff55ac9000 - 0x7fff55ad0ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff55ad1000 - 0x7fff55adcfff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff55add000 - 0x7fff55ae0fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib
0x7fff55ae1000 - 0x7fff55ae2ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff55ae3000 - 0x7fff55aeaff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff55aeb000 - 0x7fff55afefff libsystem_trace.dylib (829.70.1) /usr/lib/system/libsystem_trace.dylib
0x7fff55b00000 - 0x7fff55b05ff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff55b06000 - 0x7fff55b33ff7 libxpc.dylib (1205.70.12) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 302
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 501392
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=751.5M resident=0K(0%) swapped_out_or_unallocated=751.5M(100%)
Writable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 640K 6
Activity Tracing 256K 2
CG backing stores 19.1M 16
CG image 344K 50
CoreAnimation 992K 103
CoreGraphics 8K 2
CoreImage 216K 51
CoreUI image data 3552K 46
CoreUI image file 232K 7
Foundation 28K 3
Image IO 16K 2
Kernel Alloc Once 8K 2
MALLOC 2.3G 475
MALLOC guard page 48K 12
MALLOC_LARGE (reserved) 10.0M 4 reserved VM address space (unallocated)
Memory Tag 242 12K 2
Memory Tag 251 92K 5
OpenGL GLSL 512K 7
STACK GUARD 56.1M 30
Stack 149.7M 32
VM_ALLOCATE 300.3M 540
VM_ALLOCATE (reserved) 128.0M 5 reserved VM address space (unallocated)
__DATA 51.2M 561
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 218.8M 173
__TEXT 532.7M 523
__UNICODE 560K 2
mapped file 130.5M 140
shared memory 1784K 20
=========== ======= =======
TOTAL 3.9G 2795
TOTAL, minus reserved VM space 3.7G 2795
Log:
UCSF ChimeraX version: 0.91 (2019-06-01)
© 2016-2019 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-1.68.22
OpenGL renderer: AMD Radeon HD 6770M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Change History (2)
comment:1 by , 6 years ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in Pseudobond destructor |
comment:2 by , 6 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Hi Gabor,
--Eric