![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 7 days ago
Closed 6 days ago
#19709 closed defect (duplicate)
Crash in swap_buffers waking from sleep on Mac, macOS 26.1
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-26.1-arm64-arm-64bit
ChimeraX Version: 1.11 (2025-12-17 06:45:39 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Bus error
Current thread 0x00000001f04d2080 (most recent call first):
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 248 in swap_buffers
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 561 in swap_buffers
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 166 in status
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py", line 98 in _expose_event
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 122 in make_current
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 555 in make_current
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py", line 584 in use_shared_context
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py", line 146 in render
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py", line 115 in _redraw
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 149 in invoke
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 248 in _activate
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 217 in activate
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py", line 393 in activate_trigger
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 100 in draw_new_frame
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py", line 169 in update_graphics_now
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py", line 153 in resizeEvent
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py", line 61 in event
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init
File "/Applications/ChimeraX-1.11.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, PIL._imaging, psutil._psutil_osx, psutil._psutil_posix, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 55)
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"sleepWakeUUID" : "B74C7AFE-DBE2-4117-ADEA-CBBE60362A34",
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"vmRegionInfo" : "0x800001a00 is in 0x542000000-0x83f800000; bytes after start: 11777612288 bytes before end: 1065346559
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
MALLOC_LARGE 427000000-427384000 [ 3600K] rw-\/rwx SM=PRV
GAP OF 0x11ac7c000 BYTES
---> commpage (reserved) 542000000-83f800000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL 83f800000-83fc00000 [ 4096K] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000002, 0x0000000800001a00","rawCodes":[2,34359745024],"type":"EXC_BAD_ACCESS","signal":"SIGBUS","subtype":"KERN_PROTECTION_FAILURE at 0x0000000800001a00"},
"termination" : {"flags":0,"code":10,"namespace":"SIGNAL","indicator":"Bus error: 10","byProc":"ChimeraX","byPid":66604},
"vmregioninfo" : "0x800001a00 is in 0x542000000-0x83f800000; bytes after start: 11777612288 bytes before end: 1065346559
REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL
MALLOC_LARGE 427000000-427384000 [ 3600K] rw-\/rwx SM=PRV
GAP OF 0x11ac7c000 BYTES
---> commpage (reserved) 542000000-83f800000 [ 12.0G] ---\/--- SM=NUL reserved VM address space (unallocated)
MALLOC_SMALL 83f800000-83fc00000 [ 4096K] rw-\/rwx SM=PRV ",
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===== Log before crash start =====
UCSF ChimeraX version: 1.11 (2025-12-17)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/Paper_CAV1_JAK1_addon/FigureX_n.cxc
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/AF3/fold_jak1_865_1154_cav1_80_100/fold_jak1_865_1154_cav1_80_100_model_0.cif
Chain information for fold_jak1_865_1154_cav1_80_100_model_0.cif #1
---
Chain | Description
A | .
B | .
Computing secondary structure
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/AF3/fold_jak1_865_1154_cav1_80_100/fold_jak1_865_1154_cav1_80_100_model_1.cif
Chain information for fold_jak1_865_1154_cav1_80_100_model_1.cif #2
---
Chain | Description
A | .
B | .
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/AF3/fold_jak1_865_1154_cav1_80_100/fold_jak1_865_1154_cav1_80_100_model_2.cif
Chain information for fold_jak1_865_1154_cav1_80_100_model_2.cif #3
---
Chain | Description
A | .
B | .
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/AF3/fold_jak1_865_1154_cav1_80_100/fold_jak1_865_1154_cav1_80_100_model_3.cif
Chain information for fold_jak1_865_1154_cav1_80_100_model_3.cif #4
---
Chain | Description
A | .
B | .
> open
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/AF3/fold_jak1_865_1154_cav1_80_100/fold_jak1_865_1154_cav1_80_100_model_4.cif
Chain information for fold_jak1_865_1154_cav1_80_100_model_4.cif #5
---
Chain | Description
A | .
B | .
> renumber #1/A start 855
300 residues renumbered
> renumber #2/A start 855
300 residues renumbered
> renumber #3/A start 855
300 residues renumbered
> renumber #4/A start 855
300 residues renumbered
> renumber #5/A start 855
300 residues renumbered
> renumber #1/B start 80
31 residues renumbered
> renumber #2/B start 80
31 residues renumbered
> renumber #3/B start 80
31 residues renumbered
> renumber #4/B start 80
31 residues renumbered
> renumber #5/B start 80
31 residues renumbered
> mmaker #2/A to #1/A
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_jak1_865_1154_cav1_80_100_model_0.cif, chain A (#1) with
fold_jak1_865_1154_cav1_80_100_model_1.cif, chain A (#2), sequence alignment
score = 1572
RMSD between 294 pruned atom pairs is 0.251 angstroms; (across all 300 pairs:
0.689)
> mmaker #3/A to #1/A
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_jak1_865_1154_cav1_80_100_model_0.cif, chain A (#1) with
fold_jak1_865_1154_cav1_80_100_model_2.cif, chain A (#3), sequence alignment
score = 1573.8
RMSD between 292 pruned atom pairs is 0.240 angstroms; (across all 300 pairs:
0.598)
> mmaker #4/A to #1/A
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_jak1_865_1154_cav1_80_100_model_0.cif, chain A (#1) with
fold_jak1_865_1154_cav1_80_100_model_3.cif, chain A (#4), sequence alignment
score = 1563
RMSD between 296 pruned atom pairs is 0.237 angstroms; (across all 300 pairs:
0.371)
> mmaker #5/A to #1/A
Computing secondary structure
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker fold_jak1_865_1154_cav1_80_100_model_0.cif, chain A (#1) with
fold_jak1_865_1154_cav1_80_100_model_4.cif, chain A (#5), sequence alignment
score = 1568.4
RMSD between 293 pruned atom pairs is 0.294 angstroms; (across all 300 pairs:
0.598)
> graphics silhouettes true
> lighting soft
> color #1-5/A grey
> color #1-5/B:90-98 lawn green
executed FigureX_n.cxc
> set bgColor white
> ui tool show "Side View"
> save
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/Paper_CAV1_JAK1_addon/FigXA.png
> width 1152 height 831 supersample 3
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> select #1-5/B:90,92,94,98
195 atoms, 190 bonds, 20 residues, 5 models selected
> show sel & #1 atoms
> style sel & #1 ball
Changed 39 atom styles
> show #2 models
> hide #2 models
> show #2 models
> hide #2 models
> show #4 models
> show #5 models
> select add #4
2834 atoms, 2894 bonds, 347 residues, 5 models selected
> select add #3
5473 atoms, 5598 bonds, 674 residues, 5 models selected
> select add #2
8112 atoms, 8302 bonds, 1001 residues, 5 models selected
> select subtract #3
5434 atoms, 5560 bonds, 670 residues, 4 models selected
> select subtract #2
2756 atoms, 2818 bonds, 339 residues, 3 models selected
> select subtract #4
78 atoms, 76 bonds, 8 residues, 2 models selected
> select add #5
2717 atoms, 2780 bonds, 335 residues, 2 models selected
> show #3 models
> show #2 models
> show sel atoms
> undo
> select #1-5/B:90,92,94,98
195 atoms, 190 bonds, 20 residues, 5 models selected
> show sel atoms
> style sel ball
Changed 195 atom styles
> color sel byhetero
> select #1-5/B:90,92,94,98
195 atoms, 190 bonds, 20 residues, 5 models selected
> color sel byhetero
> style sel stick
Changed 195 atom styles
> color sel byhetero
> select #1-5/B:90,92,94,98
195 atoms, 190 bonds, 20 residues, 5 models selected
> color sel byhetero
> hide #2 models
> hide #3 models
> hide #4 models
> hide #1 models
> show #1 models
> show #2 models
> show #3 models
> show #4 models
> save
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/Paper_CAV1_JAK1_addon/FigXA2.png
> width 1152 height 831 supersample 3
> save
> /Users/pc126390/Integrative_Modelling/Projet_CAVEOLIN/Paper_CAV1_JAK1_addon/FigXA3.png
> width 1152 height 831 supersample 3
> hide #2 models
> hide #3 models
> hide #4 models
> hide #5 models
> select #1-5/B:90,92,94,98
195 atoms, 190 bonds, 20 residues, 5 models selected
> style sel & #1 ball
Changed 39 atom styles
> label (#1 & sel) text "{0.label_one_letter_code}
> {0.number}{0.insertion_code}"
> select #1/B:90,92,94,98
39 atoms, 38 bonds, 4 residues, 1 model selected
> select zone sel 4.5 #1/A residues true
Selected 134 atoms
> show sel atoms
> label sel text "{0.label_one_letter_code} {0.number}{0.insertion_code}"
> select clear
> select zone sel 4.5 #1/A residues true
No atoms or surfaces specified
> select #1/B:90,92,94,98
39 atoms, 38 bonds, 4 residues, 1 model selected
> select zone sel 4.5 #1/A residues true
Selected 134 atoms
> color sel byhetero
> style sel ball
Changed 134 atom styles
> hide sel cartoons
> select clear
> hbonds #!1 reveal true
2780 hydrogen bonds found
> ~hbonds
> ui mousemode right distance
> distance #1/A:1054@O #1/B:98@NE1
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/A MET 1054 O
and /B TRP 98 NE1: 2.904Å
> distance #1/B:98@NE1 #1/A:1056@OG
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B TRP 98 NE1
and /A SER 1056 OG: 3.651Å
> distance #1/B:94@CG2 #1/A:1053@CD2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B VAL 94 CG2
and /A LEU 1053 CD2: 5.073Å
> distance #1/B:94@CG2 #1/A:1101@CG2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B VAL 94 CG2
and /A VAL 1101 CG2: 7.155Å
> distance #1/B:94@CG2 #1/A:1045@CG1
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B VAL 94 CG2
and /A VAL 1045 CG1: 5.164Å
> distance #1/B:94@CG2 #1/A:1048@CD2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B VAL 94 CG2
and /A TYR 1048 CD2: 4.432Å
> distance #1/B:92@CE2 #1/A:1046@CE1
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B PHE 92 CE2
and /A PHE 1046 CE1: 5.994Å
> ui mousemode right translate
> ui mousemode right distance
> distance #1/A:1100@CG2 #1/B:92@CE2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/A THR 1100 CG2
and /B PHE 92 CE2: 3.866Å
> distance #1/B:92@CD1 #1/A:1101@CG2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B PHE 92 CD1
and /A VAL 1101 CG2: 3.734Å
> distance #1/B:92@CD2 #1/A:1045@CG2
Distance between fold_jak1_865_1154_cav1_80_100_model_0.cif #1/B PHE 92 CD2
and /A VAL 1045 CG2: 3.415Å
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.11 (2025-12-17)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 90.5
OpenGL renderer: Apple M4 Max
OpenGL vendor: Apple
Python: 3.11.9
Locale: fr_FR.UTF-8
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac16,5
Model Number: Z1FV000H9FN/A
Chip: Apple M4 Max
Total Number of Cores: 14 (10 performance and 4 efficiency)
Memory: 36 GB
System Firmware Version: 13822.41.1
OS Loader Version: 13822.41.1
Software:
System Software Overview:
System Version: macOS 26.1 (25B78)
Kernel Version: Darwin 25.1.0
Time since boot: 11 jours, 13 heures et 56 minutes
Graphics/Displays:
Apple M4 Max:
Chipset Model: Apple M4 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 32
Vendor: Apple (0x106b)
Metal Support: Metal 4
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3456 x 2234 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Studio Display:
Display Type: Retina LCD
Resolution: 5120 x 2880 Retina
Display Serial Number: LY0X41HPJ4
Display Firmware Version: Version 17.0 (Build 21A329)
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.7.14
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.11
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.25.1
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.2.5
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine-commercial: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pytz: 2025.2
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.0.0
roman-numerals-py: 4.0.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.0.4
stack-data: 0.6.3
starlette: 0.50.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
tzdata: 2025.3
urllib3: 2.6.2
uvicorn: 0.38.0
wcwidth: 0.2.14
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
Change History (2)
comment:1 by , 6 days ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash in swap_buffers waking from sleep on Mac |
comment:2 by , 6 days ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
| Summary: | Crash in swap_buffers waking from sleep on Mac → Crash in swap_buffers waking from sleep on Mac, macOS 26.1 |
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Crash in OpenGL swap_buffers after status line expose event in ResizeEvent processing. This is only seen in macOS 26.