Opened 9 days ago

Closed 9 days ago

#19687 closed defect (fixed)

Toolshed down

Reported by: matilda.devlin@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Tool Shed Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.26100
ChimeraX Version: 1.11 (2025-12-17 06:45:39 UTC)
Description
Toolshed won't open (have tried various methods - in command line, tools>more tools, and on my web browser). Was hoping to use to install Isolde						

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  

UCSF ChimeraX version: 1.11 (2025-12-17)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> toolshed show

> toolshed list

List of installed bundles:  

 * AddCharge (1.5.20): Add partial charges to atoms
 * AddH (2.2.8): Add hydrogens
 * AlignmentAlgorithms (2.0.2): Sequence alignment algorithms
 * AlignmentHdrs (3.6.1): Alignment header support
 * AlignmentMatrices (2.1): Sequence alignment similarity matrices
 * Alignments (3.1.1): Sequence alignment support
 * AlphaFold (1.0.1): Predict or fetch AlphaFold structures
 * AltlocExplorer (1.2): Examine/change alternate atomic locations
 * AmberInfo (1.0): Provide information about AmberTools installation
 * Animations (1.0): Create, play back, edit, and save animation timelines.
 * Aniso (1.3.2): Create thermal ellipsoid displays
 * Arrays (1.1): C++ library for parsing numpy arrays
 * Atomic (1.61.4): Atomic-structure functionality
 * AtomicLibrary (14.2.1): Atomic-structure C++ library
 * AtomSearch (2.0.1): 3D atom search
 * AxesPlanes (2.4): Depict axes or planes
 * BasicActions (1.1.3): Basic actions for user-defined specifier names
 * BILD (1.0): BILD file reader
 * BlastProtein (3.0.0): Search PDB/NR/AlphaFold using BLAST
 * Boltz (1.1): Predict structures using Boltz
 * BondRot (2.0.4): Bond rotation support
 * BugReporter (1.0.2): Report bugs when an error occurs
 * BuildStructure (2.13.1): Create/modify structures
 * Bumps (1.0): Find protrusions in density maps
 * ButtonPanel (1.0.1): Create custom user interface panels
 * CageBuilder (1.0.1): Build polygonal meshes for oligomeric molecular assemblies
 * CellPack (1.0): Fetch cellPACK models from web
 * Centroids (1.4): Depict centroid of atoms
 * ChangeChains (1.1): Change chain IDs
 * CheckWaters (1.5): Check water placement in maps
 * ChemGroup (2.0.2): Detect chemically functional groups
 * Clashes (2.3): Find clashes/contacts in structures
 * ColorActions (1.0.5): Simple interface for coloring objects
 * ColorGlobe (1.0): Show directional resolution colored sphere
 * ColorKey (1.5.8): Add color key to graphics
 * CommandLine (1.3.0): Command line support
 * ConnectStructure (2.0.1): Add bonds to structures that lack them
 * Contacts (1.0.1): Display chain contact maps
 * Core (1.11): ChimeraX Core Package
 * CoreFormats (1.2): ChimeraX session support
 * coulombic (1.4.5): Compute/show electrostatic potential
 * Crosslinks (1.0): Analyze crosslinks
 * Crystal (1.0): Crystal symmetries
 * CrystalContacts (1.0.1): Show contacting asymmetric units in a crystal
 * DataFormats (1.2.4): Data format management
 * Dicom (1.2.7): Read medical imaging and segmentations in DICOM format
 * DistMonitor (1.4.2): Interactive distance display
 * DockPrep (1.1.4): Prepare structures for docking
 * Dssp (2.0): Compute/assign secondary structure
 * EMDB-SFF (1.0): EMDB SFF file reader
 * ESMFold (1.0): Predict or fetch ESMFold structures
 * FileHistory (1.0.1): File History Panel
 * FunctionKey (1.0.1): Assign function keys to run commands
 * Geometry (1.3): Vector and coordinate system routines
 * gltf (1.0): Read/write glTF 3d scene files
 * Graphics (1.4.1): OpenGL graphics rendering
 * Hbonds (2.5.3): Identify hydrogen bonds in and among structures
 * Help (1.3): Show ChimeraX Help
 * HKCage (1.3): Create icosahedral mesh of hexagons and pentagons
 * IHM (1.1): Integrative Hybrid Models file reader
 * ImageFormats (1.2): Support for saving images
 * IMOD (1.0): IMOD model file reader
 * IO (1.0.4): Python convenience input/output functions
 * ItemsInspection (1.0.1): Inspection of attributes of a set of items
 * IUPAC (1.0): IUPAC fetch
 * KVFinder (1.7.3): Find cavities/pockets
 * Label (1.2): Add text labels to graphics
 * ListInfo (1.2.2): Report attributes for selected atomic data
 * Log (1.2.2): Log support
 * LookingGlass (1.1): LookingGlass holographic display
 * Maestro (1.9.2): Maestro reader
 * Map (1.3): Density maps
 * MapData (2.0): Volume data file formats
 * MapEraser (1.0.1): Map eraser
 * MapFilter (2.0.1): Operations on maps
 * MapFit (2.0): Fit molecules into maps
 * MapSeries (2.1.1): Volume series
 * Markers (1.0.1): Place markers on density maps
 * Mask (1.0.2): Mask a volume to a surface
 * MatchMaker (2.2.2): Superimpose structures
 * MCopy (1.0): Copy atomic structure attributes to another structure
 * MCPServer (0.1.0): Model Context Protocol server for ChimeraX
 * MDcrds (2.17.2): Molecular dynamics support
 * MedicalToolbar (1.1): Toolbar for medical image analysis
 * Meeting (1.0.1): Shared interactive VR sessions.
 * Minimize (1.3.2): Minimize structures
 * MLP (1.1.1): Molecular lipophilicity calculation
 * mmCIF (2.16): mmCIF format read/write
 * MMTF (2.2): MMTF format read/write
 * ModelArchive (1.0): Fetch structures from Model Archive and display PAE plots
 * Modeller (1.5.22): Interface to Modeller
 * ModelPanel (1.6): ChimeraX Model Panel
 * ModelSeries (1.0.1): Display sequences of models one by one
 * Mol2 (2.0.3): Mol2 reader/writer
 * Mole (1.0): Open JSON tunnel files from Mole
 * Morph (1.0.2): Morph atomic structures
 * MouseModes (1.2): Provide right button mouse mode tool
 * Movie (1.0.1): Commands to record movies
 * MutationScores (1.0): Visualize deep mutational scanning data
 * Neuron (1.0): Read SWC neuron trace files
 * Nifti (1.2): Read medical images in NIfTI format
 * NMRSTAR (1.0.2): Read NMR distance restraints from NMR-STAR files
 * NRRD (1.2): Read medical images in NRRD format
 * Nucleotides (2.0.3): Create nucleotide-specific displays
 * OpenCommand (1.15.2): Manages 'open' command extensibility
 * OrthoPick (1.0.1): Show orthogonal views for tomogram particle picking
 * PDB (2.7.11): PDB format read/write
 * PDBBio (1.0.1): PDB biological assembly fetch
 * PDBLibrary (1.0.5): C++ PDB support
 * PDBMatrices (1.0): Crystal and biological unit matrices
 * PickBlobs (1.0.1): Measure and color blobs
 * Positions (1.0): Read and write model position matrices
 * PresetMgr (1.1.4): Preset management
 * ProfileGrids (1.4.2): Sequence alignment overview
 * PubChem (2.2): PubChem fetch
 * ReadPbonds (1.0.1): Read in pseudobonds from a file
 * Registration (1.1.2): Register ChimeraX
 * RemoteControl (1.0): Control ChimeraX from other apps
 * RenderByAttr (1.6.5): Depict attribute values on structures
 * RenumberResidues (1.1): Renumber residues
 * ResidueFit (1.0.1): Display fit of residues to density map
 * RestServer (1.3.3): Starts REST server to execute commands from network requests
 * RNALayout (1.0): Make RNA models
 * RotamerLibMgr (4.0): Manage rotamer libraries
 * RotamerLibsDunbrack (2.0): Dunbrack rotamer library
 * RotamerLibsDynameomics (2.0): Dynameomics rotamer library
 * RotamerLibsRichardson (2.0): Richardson rotamer libraries
 * SaveCommand (1.5.2): Manages 'save' command extensibility
 * Scenes (0.3.1): Scene management
 * SchemeMgr (1.0): HTTP scheme management
 * SDF (2.0.3): SDF file reader
 * Segger (1.0): Segment map
 * Segment (1.0.1): Watershed segment calculation
 * Segmentations (3.5.10): Segment any volume data
 * SelInspector (1.0): Inspect contents of selection
 * SeqView (2.17.3): Sequence viewer
 * Shape (1.1): Make models for geometric shapes
 * Shell (1.0.1): Interactive Python shell
 * Shortcuts (1.2.1): Button and keyboard shortcuts
 * ShowSequences (1.0.3): Choose/show structure sequences
 * SideView (1.0.1): Side view of scene
 * SimilarStructures (1.0.1): Visualize similar structures found using Foldseek, MMseqs2 or BLAST
 * Smiles (2.1.2): SMILES fetch
 * SmoothLines (1.0): Smooth network of lines
 * SpaceNavigator (1.0): Space Navigator device support
 * StdCommands (1.19.1): Standard commands
 * STL (1.0.1): STL file read/write
 * Storm (1.0): STORM file reader
 * StructMeasure (1.2.1): Structure measurement user interface
 * Struts (1.0.1): struts for 3D printing
 * Surface (1.0.1): Surface calculations
 * SwapAA (2.0.1): Swap amino acid
 * SwapRes (2.5.2): Swap residue side chains
 * TapeMeasure (1.0): Tape measure mouse mode
 * TaskManager (1.0): Manage background tasks in ChimeraX
 * Test (1.0): simple regression test
 * Toolbar (1.2.3): Toolbar
 * ToolshedUtils (1.2.4): Toolshed bundle utilities
 * Topography (1.0): Show a topographic surface for a 2D image
 * ToQuest (1.0): Copy scenes to VR Quest headset
 * Tug (1.0.1): Tug on atoms with molecular dynamics
 * UI (1.49.1): ChimeraX user interface
 * Umap (1.0): Utilities for installing and using UMAP
 * uniprot (2.3.2): UniProt database support
 * UnitCell (1.0.1): Show crystal unit cell
 * ViewDock (1.5.2): Analyze ligand-receptor docking results
 * VIPERdb (1.0): Read Virus Particle Explorer .vdb files
 * Vive (1.1): Virtual reality headset support
 * VolumeMenu (1.0.1): Volume menu
 * vrml (1.0): Write basic VRML output for 3D color printing
 * VTK (1.0): Legacy VTK file reader and writer
 * WavefrontOBJ (1.0): Wavefront OBJ file read/write
 * WebCam (1.0.2): Combine camera video with graphics
 * WebServices (1.1.5): Web service and HTTP request support
 * Zone (1.0.1): Mouse mode to show atom and map zones



> toolshed show

> 

Incomplete command: toolshed  




OpenGL version: 3.3.0 NVIDIA 581.60
OpenGL renderer: NVIDIA RTX 500 Ada Generation Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.11.9
Locale: en_GB.cp1252
Qt version: PyQt6 6.9.1, Qt 6.9.0
Qt runtime version: 6.9.2
Qt platform: windows

Manufacturer: LENOVO
Model: 21G20009UK
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 33,832,407,040
MaxProcessMemory: 137,438,953,344
CPU: 22 Intel(R) Core(TM) Ultra 7 155H
OSLanguage: en-US

Installed Packages:
   aiohappyeyeballs: 2.6.1
   aiohttp: 3.13.1
   aiosignal: 1.4.0
   alabaster: 1.0.0
   annotated-types: 0.7.0
   anyio: 4.12.0
   appdirs: 1.4.4
   asttokens: 3.0.1
   attrs: 25.4.0
   babel: 2.17.0
   beautifulsoup4: 4.13.5
   blockdiag: 3.0.0
   blosc2: 3.12.2
   build: 1.3.0
   certifi: 2025.11.12
   cftime: 1.6.5
   charset-normalizer: 3.4.4
   ChimeraX-AddCharge: 1.5.20
   ChimeraX-AddH: 2.2.8
   ChimeraX-AlignmentAlgorithms: 2.0.2
   ChimeraX-AlignmentHdrs: 3.6.1
   ChimeraX-AlignmentMatrices: 2.1
   ChimeraX-Alignments: 3.1.1
   ChimeraX-AlphaFold: 1.0.1
   ChimeraX-AltlocExplorer: 1.2
   ChimeraX-AmberInfo: 1.0
   ChimeraX-Animations: 1.0
   ChimeraX-Aniso: 1.3.2
   ChimeraX-Arrays: 1.1
   ChimeraX-Atomic: 1.61.4
   ChimeraX-AtomicLibrary: 14.2.1
   ChimeraX-AtomSearch: 2.0.1
   ChimeraX-AxesPlanes: 2.4
   ChimeraX-BasicActions: 1.1.3
   ChimeraX-BILD: 1.0
   ChimeraX-BlastProtein: 3.0.0
   ChimeraX-Boltz: 1.1
   ChimeraX-BondRot: 2.0.4
   ChimeraX-BugReporter: 1.0.2
   ChimeraX-BuildStructure: 2.13.1
   ChimeraX-Bumps: 1.0
   ChimeraX-BundleBuilder: 1.6.0
   ChimeraX-ButtonPanel: 1.0.1
   ChimeraX-CageBuilder: 1.0.1
   ChimeraX-CellPack: 1.0
   ChimeraX-Centroids: 1.4
   ChimeraX-ChangeChains: 1.1
   ChimeraX-CheckWaters: 1.5
   ChimeraX-ChemGroup: 2.0.2
   ChimeraX-Clashes: 2.3
   ChimeraX-ColorActions: 1.0.5
   ChimeraX-ColorGlobe: 1.0
   ChimeraX-ColorKey: 1.5.8
   ChimeraX-CommandLine: 1.3.0
   ChimeraX-ConnectStructure: 2.0.1
   ChimeraX-Contacts: 1.0.1
   ChimeraX-Core: 1.11
   ChimeraX-CoreFormats: 1.2
   ChimeraX-coulombic: 1.4.5
   ChimeraX-Crosslinks: 1.0
   ChimeraX-Crystal: 1.0
   ChimeraX-CrystalContacts: 1.0.1
   ChimeraX-DataFormats: 1.2.4
   ChimeraX-Dicom: 1.2.7
   ChimeraX-DistMonitor: 1.4.2
   ChimeraX-DockPrep: 1.1.4
   ChimeraX-Dssp: 2.0
   ChimeraX-EMDB-SFF: 1.0
   ChimeraX-ESMFold: 1.0
   ChimeraX-FileHistory: 1.0.1
   ChimeraX-FunctionKey: 1.0.1
   ChimeraX-Geometry: 1.3
   ChimeraX-gltf: 1.0
   ChimeraX-Graphics: 1.4.1
   ChimeraX-Hbonds: 2.5.3
   ChimeraX-Help: 1.3
   ChimeraX-HKCage: 1.3
   ChimeraX-IHM: 1.1
   ChimeraX-ImageFormats: 1.2
   ChimeraX-IMOD: 1.0
   ChimeraX-IO: 1.0.4
   ChimeraX-ItemsInspection: 1.0.1
   ChimeraX-IUPAC: 1.0
   ChimeraX-KVFinder: 1.7.3
   ChimeraX-Label: 1.2
   ChimeraX-ListInfo: 1.2.2
   ChimeraX-Log: 1.2.2
   ChimeraX-LookingGlass: 1.1
   ChimeraX-Maestro: 1.9.2
   ChimeraX-Map: 1.3
   ChimeraX-MapData: 2.0
   ChimeraX-MapEraser: 1.0.1
   ChimeraX-MapFilter: 2.0.1
   ChimeraX-MapFit: 2.0
   ChimeraX-MapSeries: 2.1.1
   ChimeraX-Markers: 1.0.1
   ChimeraX-Mask: 1.0.2
   ChimeraX-MatchMaker: 2.2.2
   ChimeraX-MCopy: 1.0
   ChimeraX-MCPServer: 0.1.0
   ChimeraX-MDcrds: 2.17.2
   ChimeraX-MedicalToolbar: 1.1
   ChimeraX-Meeting: 1.0.1
   ChimeraX-Minimize: 1.3.2
   ChimeraX-MLP: 1.1.1
   ChimeraX-mmCIF: 2.16
   ChimeraX-MMTF: 2.2
   ChimeraX-ModelArchive: 1.0
   ChimeraX-Modeller: 1.5.22
   ChimeraX-ModelPanel: 1.6
   ChimeraX-ModelSeries: 1.0.1
   ChimeraX-Mol2: 2.0.3
   ChimeraX-Mole: 1.0
   ChimeraX-Morph: 1.0.2
   ChimeraX-MouseModes: 1.2
   ChimeraX-Movie: 1.0.1
   ChimeraX-MutationScores: 1.0
   ChimeraX-Neuron: 1.0
   ChimeraX-Nifti: 1.2
   ChimeraX-NMRSTAR: 1.0.2
   ChimeraX-NRRD: 1.2
   ChimeraX-Nucleotides: 2.0.3
   ChimeraX-OpenCommand: 1.15.2
   ChimeraX-OrthoPick: 1.0.1
   ChimeraX-PDB: 2.7.11
   ChimeraX-PDBBio: 1.0.1
   ChimeraX-PDBLibrary: 1.0.5
   ChimeraX-PDBMatrices: 1.0
   ChimeraX-PickBlobs: 1.0.1
   ChimeraX-Positions: 1.0
   ChimeraX-PresetMgr: 1.1.4
   ChimeraX-ProfileGrids: 1.4.2
   ChimeraX-PubChem: 2.2
   ChimeraX-ReadPbonds: 1.0.1
   ChimeraX-Registration: 1.1.2
   ChimeraX-RemoteControl: 1.0
   ChimeraX-RenderByAttr: 1.6.5
   ChimeraX-RenumberResidues: 1.1
   ChimeraX-ResidueFit: 1.0.1
   ChimeraX-RestServer: 1.3.3
   ChimeraX-RNALayout: 1.0
   ChimeraX-RotamerLibMgr: 4.0
   ChimeraX-RotamerLibsDunbrack: 2.0
   ChimeraX-RotamerLibsDynameomics: 2.0
   ChimeraX-RotamerLibsRichardson: 2.0
   ChimeraX-SaveCommand: 1.5.2
   ChimeraX-Scenes: 0.3.1
   ChimeraX-SchemeMgr: 1.0
   ChimeraX-SDF: 2.0.3
   ChimeraX-Segger: 1.0
   ChimeraX-Segment: 1.0.1
   ChimeraX-Segmentations: 3.5.10
   ChimeraX-SelInspector: 1.0
   ChimeraX-SeqView: 2.17.3
   ChimeraX-Shape: 1.1
   ChimeraX-Shell: 1.0.1
   ChimeraX-Shortcuts: 1.2.1
   ChimeraX-ShowSequences: 1.0.3
   ChimeraX-SideView: 1.0.1
   ChimeraX-SimilarStructures: 1.0.1
   ChimeraX-Smiles: 2.1.2
   ChimeraX-SmoothLines: 1.0
   ChimeraX-SpaceNavigator: 1.0
   ChimeraX-StdCommands: 1.19.1
   ChimeraX-STL: 1.0.1
   ChimeraX-Storm: 1.0
   ChimeraX-StructMeasure: 1.2.1
   ChimeraX-Struts: 1.0.1
   ChimeraX-Surface: 1.0.1
   ChimeraX-SwapAA: 2.0.1
   ChimeraX-SwapRes: 2.5.2
   ChimeraX-TapeMeasure: 1.0
   ChimeraX-TaskManager: 1.0
   ChimeraX-Test: 1.0
   ChimeraX-Toolbar: 1.2.3
   ChimeraX-ToolshedUtils: 1.2.4
   ChimeraX-Topography: 1.0
   ChimeraX-ToQuest: 1.0
   ChimeraX-Tug: 1.0.1
   ChimeraX-UI: 1.49.1
   ChimeraX-Umap: 1.0
   ChimeraX-uniprot: 2.3.2
   ChimeraX-UnitCell: 1.0.1
   ChimeraX-ViewDock: 1.5.2
   ChimeraX-VIPERdb: 1.0
   ChimeraX-Vive: 1.1
   ChimeraX-VolumeMenu: 1.0.1
   ChimeraX-vrml: 1.0
   ChimeraX-VTK: 1.0
   ChimeraX-WavefrontOBJ: 1.0
   ChimeraX-WebCam: 1.0.2
   ChimeraX-WebServices: 1.1.5
   ChimeraX-Zone: 1.0.1
   click: 8.3.1
   colorama: 0.4.6
   comm: 0.2.3
   comtypes: 1.4.11
   contourpy: 1.3.3
   coverage: 7.13.0
   cxservices: 1.2.3
   cycler: 0.12.1
   Cython: 3.1.4
   debugpy: 1.8.19
   decorator: 5.2.1
   docutils: 0.21.2
   executing: 2.2.1
   filelock: 3.19.1
   fonttools: 4.61.1
   frozenlist: 1.8.0
   funcparserlib: 2.0.0a0
   glfw: 2.10.0
   grako: 3.16.5
   h11: 0.16.0
   h5py: 3.15.1
   html2text: 2025.4.15
   httpcore: 1.0.9
   httpx: 0.28.1
   httpx-sse: 0.4.3
   idna: 3.11
   ihm: 2.2
   imagecodecs: 2024.6.1
   imagesize: 1.4.1
   iniconfig: 2.3.0
   ipykernel: 6.30.1
   ipython: 9.5.0
   ipython_pygments_lexers: 1.1.1
   ipywidgets: 8.1.8
   jedi: 0.19.2
   Jinja2: 3.1.6
   jsonschema: 4.25.1
   jsonschema-specifications: 2025.9.1
   jupyter_client: 8.6.3
   jupyter_core: 5.9.1
   jupyterlab_widgets: 3.0.16
   kiwisolver: 1.4.9
   line_profiler: 5.0.0
   lxml: 6.0.2
   lz4: 4.3.2
   Markdown: 3.8.2
   MarkupSafe: 3.0.3
   matplotlib: 3.10.7
   matplotlib-inline: 0.2.1
   mcp: 1.18.0
   msgpack: 1.1.1
   multidict: 6.7.0
   ndindex: 1.10.1
   nest-asyncio: 1.6.0
   netCDF4: 1.6.5
   networkx: 3.3
   nibabel: 5.2.0
   nptyping: 2.5.0
   numexpr: 2.14.1
   numpy: 1.26.4
   nvidia-nvjitlink-cu12: 12.9.86
   OpenMM: 8.2.0
   OpenMM-CUDA-12: 8.2.0
   openvr: 1.26.701
   packaging: 25.0
   ParmEd: 4.2.2
   parso: 0.8.5
   pep517: 0.13.1
   pickleshare: 0.7.5
   pillow: 11.3.0
   pip: 25.2
   pkginfo: 1.12.1.2
   platformdirs: 4.5.1
   pluggy: 1.6.0
   prompt_toolkit: 3.0.52
   propcache: 0.4.1
   psutil: 7.0.0
   pure_eval: 0.2.3
   py-cpuinfo: 9.0.0
   pybind11: 3.0.1
   pycollada: 0.8
   pydantic: 2.12.5
   pydantic-settings: 2.12.0
   pydantic_core: 2.41.5
   pydicom: 2.4.4
   Pygments: 2.18.0
   pynmrstar: 3.3.6
   pynrrd: 1.0.0
   PyOpenGL: 3.1.10
   PyOpenGL-accelerate: 3.1.10
   pyopenxr: 1.1.4501
   pyparsing: 3.2.5
   pyproject_hooks: 1.2.0
   PyQt6-commercial: 6.9.1
   PyQt6-Qt6: 6.9.2
   PyQt6-WebEngine-commercial: 6.9.0
   PyQt6-WebEngine-Qt6: 6.9.2
   PyQt6_sip: 13.10.2
   pytest: 9.0.2
   pytest-cov: 7.0.0
   python-dateutil: 2.9.0.post0
   python-dotenv: 1.2.1
   python-multipart: 0.0.21
   pytz: 2025.2
   pywin32: 311
   pyzmq: 27.1.0
   qtconsole: 5.7.0
   QtPy: 2.4.3
   qtshim: 1.2
   RandomWords: 0.4.0
   referencing: 0.37.0
   requests: 2.32.5
   roman-numerals: 4.0.0
   roman-numerals-py: 4.0.0
   rpds-py: 0.30.0
   scipy: 1.14.0
   setuptools: 80.9.0
   sfftk-rw: 0.8.1
   six: 1.17.0
   snowballstemmer: 3.0.1
   sortedcontainers: 2.4.0
   soupsieve: 2.8
   Sphinx: 8.2.3
   sphinx-autodoc-typehints: 3.2.0
   sphinxcontrib-applehelp: 2.0.0
   sphinxcontrib-blockdiag: 3.0.0
   sphinxcontrib-devhelp: 2.0.0
   sphinxcontrib-htmlhelp: 2.1.0
   sphinxcontrib-jsmath: 1.0.1
   sphinxcontrib-qthelp: 2.0.0
   sphinxcontrib-serializinghtml: 2.0.0
   sse-starlette: 3.0.4
   stack-data: 0.6.3
   starlette: 0.50.0
   superqt: 0.7.6
   tables: 3.10.2
   tcia_utils: 1.5.1
   tifffile: 2025.3.13
   tinyarray: 1.2.5
   tornado: 6.5.4
   traitlets: 5.14.3
   typing-inspection: 0.4.2
   typing_extensions: 4.15.0
   tzdata: 2025.3
   urllib3: 2.6.2
   uvicorn: 0.38.0
   wcwidth: 0.2.14
   webcolors: 24.11.1
   wheel: 0.45.1
   wheel-filename: 1.4.2
   widgetsnbextension: 4.0.15
   WMI: 1.5.1
   yarl: 1.22.0

Change History (2)

comment:1 by Eric Pettersen, 9 days ago

Component: UnassignedTool Shed
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionToolshed down

comment:2 by Eric Pettersen, 9 days ago

Resolution: fixed
Status: acceptedclosed

Hi Matilda,

The Toolshed was down for the last day or so. It is working now, so please try again.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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