Opened 6 years ago

Closed 6 years ago

#1966 closed defect (fixed)

CA-CB bond not shown

Reported by: pett Owned by: Conrad Huang
Priority: major Milestone: 0.9
Component: Depiction Version:
Keywords: Cc: chimera-programmers, Elaine Meng
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

As per Elaine's example from #1965:

open 3bp5
hide
delete ~protein
contacts /a&protein test /b&protein reveal true

Despite all the side chain atoms and the CA atom having their display attribute as True, the CA-CB bond is not displayed (nor is the CA atom). The CA atom does have its ribbon hide bit set. This was not the behavior when the contacts command was implemented.

Change History (4)

comment:1 by Conrad Huang, 6 years ago

Status: assignedfeedback

This appears fixed. Can you confirm?

in reply to:  2 ; comment:2 by Elaine Meng, 6 years ago

From: Elaine Meng <meng@cgl.ucsf.edu>
Subject: Re: tether issues in current ChimeraX builds
Date: June 3, 2019 at 10:51:51 AM PDT
To: Chimera Staff <chimera-staff@cgl.ucsf.edu>

Update: in today’s development-daily and release candidate builds containing Greg’s additional code changes,  I’m happy to report that these three issues look fine in my test cases:

#1965 (missing tethers)
#1966 (missing CA atoms) 
#1981 (disconnected nuc tubes)

comment:3 by Elaine Meng, 6 years ago

Also looks fine in current daily build, in case you were thinking it might have gotten rebroken. I'm just using that same test case as in the initial report.

comment:4 by Conrad Huang, 6 years ago

Resolution: fixed
Status: feedbackclosed
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