![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 weeks ago
Closed 4 weeks ago
#19070 closed defect (duplicate)
Crash in garbage collection
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.7.10-x86_64-i386-64bit
ChimeraX Version: 1.7.1 (2024-01-23 01:58:08 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x0000700012cb4000 (most recent call first):
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Thread 0x0000700014cc0000 (most recent call first):
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 324 in wait
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 622 in wait
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1392 in run
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 1038 in _bootstrap_inner
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py", line 995 in _bootstrap
Current thread 0x000000010cdb0e00 (most recent call first):
Garbage-collecting
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py", line 69 in residue_or_none
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py", line 71 in
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/ctypes_support.py", line 71 in residues_or_nones
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molc.py", line 177 in get_prop
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 1159 in _get_numbering_start
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 866 in __copy__
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py", line 1130 in __copy__
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/copy.py", line 84 in copy
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/alignment.py", line 117 in __init__
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/manager.py", line 253 in new_alignment
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/seqalign/cmd.py", line 241 in seqalign_chain
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py", line 2908 in run
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py", line 49 in run
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/widgets/htmlview.py", line 464 in cxcmd
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/widgets/htmlview.py", line 446 in defer
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 375 in thread_safe
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/widgets/htmlview.py", line 455 in chimerax_intercept
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/log/tool.py", line 206 in link_intercept
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/widgets/htmlview.py", line 93 in _intercept
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/widgets/htmlview.py", line 320 in interceptRequest
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 918 in init
File "/private/var/folders/vb/vvgw7k7j26v7zdgrxr1nxntm0000gn/T/AppTranslocation/7A08658A-29CA-4F85-803E-309F3566B5CA/d/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1069 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtWebChannel, PyQt6.QtNetwork, PyQt6.QtWebEngineCore, PyQt6.QtPrintSupport, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, chimerax.atom_search.ast, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 55)
Process: ChimeraX [77768]
Path: /private/var/folders/*/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.7.1 (1.7.1.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [77768]
User ID: 501
Date/Time: 2025-10-08 11:17:52.595 -0600
OS Version: macOS 11.7.10 (20G1427)
Report Version: 12
Anonymous UUID: 49D73627-88B2-9033-C08C-E8065A361A5B
Sleep/Wake UUID: D18B9973-9C53-44E2-882E-F77E204FB259
Time Awake Since Boot: 940000 seconds
Time Since Wake: 7900 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00000000000000a9
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xa9:
-->
__TEXT 10b0fa000-10b0fe000 [ 16K] r-x/r-x SM=COW /var/folders/*/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2049990e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204c85bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff203acbd5 raise + 26
3 org.python.python 0x000000010b3875d4 faulthandler_fatal_error + 388
4 libsystem_platform.dylib 0x00007fff2050dd7d _sigtramp + 29
5 ??? 000000000000000000 0 + 0
6 org.python.python 0x000000010b1de300 frame_traverse + 176
7 org.python.python 0x000000010b383888 gc_collect_main + 2568
8 org.python.python 0x000000010b385102 _PyObject_GC_Link + 306
9 org.python.python 0x000000010b385197 _PyObject_GC_New + 119
10 org.python.python 0x000000010b20c42d PyDict_New + 141
11 cymol.cpython-311-darwin.so 0x000000012d04968b __pyx_tp_new_8chimerax_6atomic_5cymol_CyResidue(_typeobject*, _object*, _object*) + 75
12 org.python.python 0x000000010b239b15 type_call + 69
13 org.python.python 0x000000010b1b53b1 _PyObject_MakeTpCall + 129
14 org.python.python 0x000000010b1b8007 object_vacall + 535
15 org.python.python 0x000000010b1b83bf PyObject_CallFunctionObjArgs + 159
16 libatomstruct.dylib 0x000000012ce25c88 pyinstance::PythonInstance::py_instance(bool) const + 152
17 cymol.cpython-311-darwin.so 0x000000012d055fc7 __pyx_pw_8chimerax_6atomic_5cymol_9CyResidue_51c_ptr_to_py_inst(_object*, _object*, _object*) + 87
18 org.python.python 0x000000010b21a7c4 cfunction_call + 52
19 org.python.python 0x000000010b1b53b1 _PyObject_MakeTpCall + 129
20 org.python.python 0x000000010b2e33e7 _PyEval_EvalFrameDefault + 60455
21 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
22 org.python.python 0x000000010b1c5eb1 property_descr_get + 129
23 org.python.python 0x000000010b220f44 _PyObject_GenericGetAttrWithDict + 420
24 org.python.python 0x000000010b2dc222 _PyEval_EvalFrameDefault + 31330
25 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
26 org.python.python 0x000000010b1c5eb1 property_descr_get + 129
27 org.python.python 0x000000010b220f44 _PyObject_GenericGetAttrWithDict + 420
28 org.python.python 0x000000010b2dc222 _PyEval_EvalFrameDefault + 31330
29 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
30 org.python.python 0x000000010b1b5670 _PyObject_FastCallDictTstate + 96
31 org.python.python 0x000000010b243995 slot_tp_init + 181
32 org.python.python 0x000000010b239b4a type_call + 122
33 org.python.python 0x000000010b1b636b _PyObject_Call + 107
34 org.python.python 0x000000010b2e654a _PyEval_EvalFrameDefault + 73098
35 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
36 org.python.python 0x000000010b1b5f78 _PyVectorcall_Call + 120
37 org.python.python 0x000000010b2e654a _PyEval_EvalFrameDefault + 73098
38 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
39 org.python.python 0x000000010b2e654a _PyEval_EvalFrameDefault + 73098
40 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
41 org.python.python 0x000000010b1b5f78 _PyVectorcall_Call + 120
42 org.python.python 0x000000010b2e654a _PyEval_EvalFrameDefault + 73098
43 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
44 org.python.python 0x000000010b1b971f method_vectorcall + 207
45 org.python.python 0x000000010b2e654a _PyEval_EvalFrameDefault + 73098
46 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
47 org.python.python 0x000000010b1b971f method_vectorcall + 207
48 sip.cpython-311-darwin.so 0x000000011ce34367 sip_api_call_procedure_method + 199
49 QtWebEngineCore.abi3.so 0x000000012a116d0e sipQWebEngineUrlRequestInterceptor::interceptRequest(QWebEngineUrlRequestInfo&) + 110
50 QtWebEngineCore 0x000000011e88cd97 0x11e814000 + 494999
51 QtWebEngineCore 0x000000011e88c405 0x11e814000 + 492549
52 QtWebEngineCore 0x000000011e88dcbd 0x11e814000 + 498877
53 QtWebEngineCore 0x000000011ee7f9ff 0x11e814000 + 6732287
54 QtWebEngineCore 0x0000000122f5db0a 0x11e814000 + 74750730
55 QtWebEngineCore 0x0000000122f61f8f 0x11e814000 + 74768271
56 QtWebEngineCore 0x0000000122f5ef2d 0x11e814000 + 74755885
57 QtWebEngineCore 0x0000000122f66985 0x11e814000 + 74787205
58 QtWebEngineCore 0x0000000122f66144 0x11e814000 + 74785092
59 QtWebEngineCore 0x0000000122f61fcb 0x11e814000 + 74768331
60 QtWebEngineCore 0x0000000122f5acbb 0x11e814000 + 74738875
61 QtWebEngineCore 0x0000000122f5b5ff 0x11e814000 + 74741247
62 QtWebEngineCore 0x0000000122f7a92b 0x11e814000 + 74869035
63 QtWebEngineCore 0x00000001226d8689 0x11e814000 + 65816201
64 QtWebEngineCore 0x00000001226f128f 0x11e814000 + 65917583
65 QtWebEngineCore 0x00000001226f0fca 0x11e814000 + 65916874
66 QtWebEngineCore 0x00000001226f1812 0x11e814000 + 65918994
67 QtWebEngineCore 0x000000011e852c2a 0x11e814000 + 257066
68 QtCore 0x000000011aa244cd QObject::event(QEvent*) + 109
69 QtWidgets 0x000000011d478a87 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
70 QtWidgets 0x000000011d479a43 QApplication::notify(QObject*, QEvent*) + 499
71 QtWidgets.abi3.so 0x000000011cf951e6 sipQApplication::notify(QObject*, QEvent*) + 230
72 QtCore 0x000000011a9dbc3a QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
73 QtCore 0x000000011a9dcd52 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 802
74 libqcocoa.dylib 0x000000012a299b8b 0x12a280000 + 105355
75 libqcocoa.dylib 0x000000012a29a29b 0x12a280000 + 107163
76 com.apple.CoreFoundation 0x00007fff205c0cdc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
77 com.apple.CoreFoundation 0x00007fff205c0c44 __CFRunLoopDoSource0 + 180
78 com.apple.CoreFoundation 0x00007fff205c09c4 __CFRunLoopDoSources0 + 242
79 com.apple.CoreFoundation 0x00007fff205bf3ec __CFRunLoopRun + 893
80 com.apple.CoreFoundation 0x00007fff205be9ac CFRunLoopRunSpecific + 563
81 com.apple.HIToolbox 0x00007fff288091f3 RunCurrentEventLoopInMode + 292
82 com.apple.HIToolbox 0x00007fff28808f55 ReceiveNextEventCommon + 587
83 com.apple.HIToolbox 0x00007fff28808cf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
84 com.apple.AppKit 0x00007fff22dc8ad2 _DPSNextEvent + 864
85 com.apple.AppKit 0x00007fff22dc72a5 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
86 com.apple.AppKit 0x00007fff22db95c9 -[NSApplication run] + 586
87 libqcocoa.dylib 0x000000012a2990ac 0x12a280000 + 102572
88 QtCore 0x000000011a9e5326 QEventLoop::exec(QFlags) + 486
89 QtCore 0x000000011a9dc235 QCoreApplication::exec() + 133
90 QtWidgets.abi3.so 0x000000011d081d9a meth_QApplication_exec(_object*, _object*) + 90
91 org.python.python 0x000000010b21a7ea cfunction_call + 90
92 org.python.python 0x000000010b1b53b1 _PyObject_MakeTpCall + 129
93 org.python.python 0x000000010b2e33e7 _PyEval_EvalFrameDefault + 60455
94 org.python.python 0x000000010b2d347a PyEval_EvalCode + 282
95 org.python.python 0x000000010b2cdce3 builtin_exec + 483
96 org.python.python 0x000000010b21b144 cfunction_vectorcall_FASTCALL_KEYWORDS + 68
97 org.python.python 0x000000010b2e32ef _PyEval_EvalFrameDefault + 60207
98 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
99 org.python.python 0x000000010b3806fd pymain_run_module + 253
100 org.python.python 0x000000010b3801c1 Py_RunMain + 2225
101 org.python.python 0x000000010b38117b pymain_main + 43
102 org.python.python 0x000000010b38114a Py_Main + 42
103 edu.ucsf.cgl.ChimeraX 0x000000010b0fdd9a main + 122
104 libdyld.dylib 0x00007fff204e3f3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010d13f67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 2:
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010d13f67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 3:
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 libopenblas64_.0.dylib 0x000000010d13f67f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff2049c1b2 kevent64 + 10
1 QtWebEngineCore 0x0000000122774a2a 0x11e814000 + 66456106
2 QtWebEngineCore 0x0000000122774927 0x11e814000 + 66455847
3 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
4 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
5 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
6 QtWebEngineCore 0x00000001226fb2ad 0x11e814000 + 65958573
7 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
8 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x000000012270826c 0x11e814000 + 66011756
5 QtWebEngineCore 0x0000000122707ddd 0x11e814000 + 66010589
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff2049c1b2 kevent64 + 10
1 QtWebEngineCore 0x0000000122774a2a 0x11e814000 + 66456106
2 QtWebEngineCore 0x0000000122774927 0x11e814000 + 66455847
3 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
4 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
5 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
6 QtWebEngineCore 0x00000001216393a2 0x11e814000 + 48386978
7 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
8 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122742bef 0x11e814000 + 66251759
4 QtWebEngineCore 0x00000001226781c9 0x11e814000 + 65421769
5 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
6 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
7 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
8 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
9 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x000000012273ad1b 0x11e814000 + 66219291
3 QtWebEngineCore 0x000000012480892d 0x11e814000 + 100616493
4 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
5 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122678168 0x11e814000 + 65421672
4 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
5 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
6 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
7 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
8 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff2049c1b2 kevent64 + 10
1 QtWebEngineCore 0x0000000122774a2a 0x11e814000 + 66456106
2 QtWebEngineCore 0x0000000122774927 0x11e814000 + 66455847
3 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
4 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
5 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
6 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
7 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
8 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122742bef 0x11e814000 + 66251759
4 QtWebEngineCore 0x00000001226781c9 0x11e814000 + 65421769
5 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
6 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
7 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
8 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
9 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 12:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122678168 0x11e814000 + 65421672
4 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
5 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
6 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
7 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
8 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
9 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 13:: NetworkService
0 libsystem_kernel.dylib 0x00007fff2049c1b2 kevent64 + 10
1 QtWebEngineCore 0x0000000122774a2a 0x11e814000 + 66456106
2 QtWebEngineCore 0x0000000122774927 0x11e814000 + 66455847
3 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
4 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
5 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
6 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
7 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
8 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122742bef 0x11e814000 + 66251759
4 QtWebEngineCore 0x00000001226781c9 0x11e814000 + 65421769
5 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
6 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
7 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
8 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
9 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 15:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x000000012270826c 0x11e814000 + 66011756
5 QtWebEngineCore 0x0000000122707ecd 0x11e814000 + 66010829
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122742bef 0x11e814000 + 66251759
4 QtWebEngineCore 0x00000001226781c9 0x11e814000 + 65421769
5 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
6 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
7 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
8 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
9 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 17:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x0000000122742bef 0x11e814000 + 66251759
4 QtWebEngineCore 0x00000001226781c9 0x11e814000 + 65421769
5 QtWebEngineCore 0x00000001226f1a5c 0x11e814000 + 65919580
6 QtWebEngineCore 0x00000001226a9998 0x11e814000 + 65624472
7 QtWebEngineCore 0x0000000122713eb8 0x11e814000 + 66059960
8 QtWebEngineCore 0x000000012271404a 0x11e814000 + 66060362
9 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
10 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x0000000122707f9a 0x11e814000 + 66011034
5 QtWebEngineCore 0x0000000122707e0d 0x11e814000 + 66010637
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 19:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff205c0ebf __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff205bf59f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff205be9ac CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f4eb7a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 20:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x000000012270826c 0x11e814000 + 66011756
5 QtWebEngineCore 0x0000000122707ddd 0x11e814000 + 66010589
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 21:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x000000012270826c 0x11e814000 + 66011756
5 QtWebEngineCore 0x0000000122707e6d 0x11e814000 + 66010733
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 22:
0 libsystem_pthread.dylib 0x00007fff204c4420 start_wqthread + 0
Thread 23:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2049329a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2049360c mach_msg + 60
2 QtWebEngineCore 0x0000000122742e26 0x11e814000 + 66252326
3 QtWebEngineCore 0x00000001227077bf 0x11e814000 + 66009023
4 QtWebEngineCore 0x000000012270826c 0x11e814000 + 66011756
5 QtWebEngineCore 0x0000000122707e6d 0x11e814000 + 66010733
6 QtWebEngineCore 0x000000012273b908 0x11e814000 + 66222344
7 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 24:
0 libsystem_pthread.dylib 0x00007fff204c4420 start_wqthread + 0
Thread 25:
0 libsystem_pthread.dylib 0x00007fff204c4420 start_wqthread + 0
Thread 26:
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010b36d214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010b3f0d9e acquire_timed + 318
4 org.python.python 0x000000010b3f0fdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b1c6b07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010b2e32ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b1b9816 method_vectorcall + 454
9 org.python.python 0x000000010b3f1b26 thread_run + 230
10 org.python.python 0x000000010b36cea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 27:
0 libsystem_kernel.dylib 0x00007fff20495cbe __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff204c8e49 _pthread_cond_wait + 1298
2 org.python.python 0x000000010b36d214 PyThread_acquire_lock_timed + 340
3 org.python.python 0x000000010b3f0d9e acquire_timed + 318
4 org.python.python 0x000000010b3f0fdc lock_PyThread_acquire_lock + 44
5 org.python.python 0x000000010b1c6b07 method_vectorcall_VARARGS_KEYWORDS + 167
6 org.python.python 0x000000010b2e32ef _PyEval_EvalFrameDefault + 60207
7 org.python.python 0x000000010b2e94d0 _PyEval_Vector + 128
8 org.python.python 0x000000010b1b9816 method_vectorcall + 454
9 org.python.python 0x000000010b3f1b26 thread_run + 230
10 org.python.python 0x000000010b36cea4 pythread_wrapper + 36
11 libsystem_pthread.dylib 0x00007fff204c88fc _pthread_start + 224
12 libsystem_pthread.dylib 0x00007fff204c4443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010cdb0e00 rcx: 0x00007f81867dd9e8 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f81867dda10 rsp: 0x00007f81867dd9e8
r8: 0x0000000000000002 r9: 0xcccccccccccccccd r10: 0x000000010cdb0e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00007ffee4b00401 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2049990e rfl: 0x0000000000000246 cr2: 0x0000600064e4eef8
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
ff ff ff ff 48 89 d8 48-8b 00 48 ff c2 48 39 c3 ....H..H..H..H9.
75 f5 48 8d 3d c5 12 16-00 48 8d b5 70 ff ff ff u.H.=....H..p...
31 c0 e8 bf 83 fe ff 48-8b 05 68 e7 16 00 48 8b 1......H..h...H.
00 48 3b 45 d8 75 0d 48-83 c4 70 5b 41 5c 41 5e .H;E.u.H..p[A\A^
41 5f 5d c3 e8 cd ae 0e-00 66 2e 0f 1f 84 00 00 A_]......f......
00 00 00 0f 1f 00 55 48-89 e5 53 50 48 8b 47 08 ......UH..SPH.G.
[f6]80 a9 00 00 00 40 75-09 31 c0 48 83 c4 08 5b ......@u.1.H...[ /var/folders/*/ChimeraX-1.7.1.app/Contents/MacOS/ChimeraX
0x10b10f000 - 0x10b4f2fff +org.python.python (3.11.2, [c] 2001-2023 Python Software Foundation. - 3.11.2) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/Python
0x10bc4c000 - 0x10bc57fff +math.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/math.cpython-311-darwin.so
0x10bc68000 - 0x10bc77fff +_datetime.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_datetime.cpython-311-darwin.so
0x10bc8c000 - 0x10bc8ffff +_typing.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_typing.cpython-311-darwin.so
0x10bd9c000 - 0x10bda3fff +zlib.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/zlib.cpython-311-darwin.so
0x10bdb4000 - 0x10bdb7fff +_bz2.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bz2.cpython-311-darwin.so
0x10bdc4000 - 0x10bdf3fff +_lzma.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_lzma.cpython-311-darwin.so
0x10be08000 - 0x10be0bfff +_bisect.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_bisect.cpython-311-darwin.so
0x10be18000 - 0x10be1bfff +_random.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_random.cpython-311-darwin.so
0x10be28000 - 0x10be2ffff +_sha512.cpython-311-darwin.so (0) /var/folders/*/ChimeraX-1.7.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload/_sha512.cpython-311-darwin.so
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0x7fff6b9fc000 - 0x7fff6ba2ffff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6ba30000 - 0x7fff6ba6cfff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6ba6d000 - 0x7fff6bc00fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6bc01000 - 0x7fff6bc0bfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6bc0c000 - 0x7fff6bd89fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bd8a000 - 0x7fff6bdb2fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d04b000 - 0x7fff6d0a3fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e14d000 - 0x7fff6e154fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e155000 - 0x7fff6e23cfff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6f7c2000 - 0x7fff6f7d4fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73af2000 - 0x7fff73afdfff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73d13000 - 0x7fff73d2bfff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff7763a000 - 0x7fff77641fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 744K 34
CoreAnimation 920K 59
CoreGraphics 12K 2
CoreUI image data 5116K 40
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 661.1M 476
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 2336K 14 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 16K 2
OpenGL GLSL 384K 4
STACK GUARD 108K 27
Stack 187.7M 28
Stack Guard 56.0M 1
VM_ALLOCATE 217.2M 189
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
__DATA 38.5M 643
__DATA_CONST 35.3M 313
__DATA_DIRTY 1711K 212
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 532.2M 261
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 673.0M 629
__UNICODE 588K 1
mapped file 267.3M 51
shared memory 3088K 24
=========== ======= =======
TOTAL 2.9G 3037
TOTAL, minus reserved VM space 2.7G 3037
===== Log before crash start =====
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/mgm/AIM CoBRE Dropbox/Ruheena Javed/1. Vojo - Ruheena/0.
> AlphaFold Jobs/ATG9A-ULK3/fold_2025_10_06_17_02
> (1)/fold_2025_10_06_17_02_model_1.cif"
Chain information for fold_2025_10_06_17_02_model_1.cif #1
---
Chain | Description
A | .
B | .
> select /A:1-345
2617 atoms, 2686 bonds, 345 residues, 1 model selected
> color sel cyan
> select /B:1-472
3759 atoms, 3832 bonds, 472 residues, 1 model selected
> color sel cornflower blue
> color sel orange
> select clear
> coulombic
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for fold_2025_10_06_17_02_model_1.cif_A SES surface #1.1:
minimum, -22.15, mean -1.87, maximum 11.53
Coulombic values for fold_2025_10_06_17_02_model_1.cif_B SES surface #1.2:
minimum, -15.12, mean -1.08, maximum 11.43
To also show corresponding color key, enter the above coulombic command and
add key true
> hide surfaces
> show cartoons
> show atoms
> hide atoms
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #1/B
Alignment identifier is 1/B
> select /B:14-19,26-33,40-47,77-82,86-92,143-145,153-155
339 atoms, 339 bonds, 41 residues, 1 model selected
> select
> /B:48-50,53-68,99-106,111-131,140-142,160-163,169-171,176-178,182-186,192-208,218-226,241-250,261-265,272-274,280-296,300-320,324-349,353-357,362-369,374-391,396-416,421-471
2233 atoms, 2245 bonds, 277 residues, 1 model selected
> select /A:2-14,24-29,32-35,38-42,55-69,77-99,109-117,124-135,146-161,186-242
1267 atoms, 1285 bonds, 160 residues, 1 model selected
> select /B:14-19,26-33,40-47,77-82,86-92,143-145,153-155
339 atoms, 339 bonds, 41 residues, 1 model selected
> select
> /B:48-50,53-68,99-106,111-131,140-142,160-163,169-171,176-178,182-186,192-208,218-226,241-250,261-265,272-274,280-296,300-320,324-349,353-357,362-369,374-391,396-416,421-471
2233 atoms, 2245 bonds, 277 residues, 1 model selected
> select /B:14-19,26-33,40-47,77-82,86-92,143-145,153-155
339 atoms, 339 bonds, 41 residues, 1 model selected
> select
> /B:48-50,53-68,99-106,111-131,140-142,160-163,169-171,176-178,182-186,192-208,218-226,241-250,261-265,272-274,280-296,300-320,324-349,353-357,362-369,374-391,396-416,421-471
2233 atoms, 2245 bonds, 277 residues, 1 model selected
> select clear
> color bychain
> color byhetero
> color bfactor
6376 atoms, 817 residues, 2 surfaces, atom bfactor range 11 to 95.1
> hide surfaces
> hide cartoons
> show cartoons
> hide atoms
> hide surfaces
> color bfactor
6376 atoms, 817 residues, 2 surfaces, atom bfactor range 11 to 95.1
> select clear
> ui mousemode right "link markers"
> ui mousemode right "delete markers"
> select clear
> color bfactor
6376 atoms, 817 residues, 2 surfaces, atom bfactor range 11 to 95.1
> set bgColor white
> set bgColor black
> hide cartoons
> show cartoons
> hide atoms
> style stick
Changed 6376 atom styles
> select /A:1-345
2617 atoms, 2686 bonds, 345 residues, 1 model selected
> select clear
> hide #!1 models
> show #!1 models
> select add #1
6376 atoms, 6518 bonds, 817 residues, 1 model selected
> select subtract #1
2 models selected
> hide #!1 models
> show #!1 models
> hide #1.2 models
> hide #1.1 models
> hide #!1 models
> show #!1 models
> show #1.1 models
> show #1.2 models
> hide #!1 models
> show #!1 models
> hide #1.1 models
> hide #1.2 models
> view clip false
> show target m
> hide target m
> show target m
> close
> open "/Users/mgm/AIM CoBRE Dropbox/Ruheena Javed/1. Vojo - Ruheena/0.
> AlphaFold Jobs/ATG9A-ULK3/fold_2025_10_06_17_02
> (1)/fold_2025_10_06_17_02_model_1.cif" format mmcif
Chain information for fold_2025_10_06_17_02_model_1.cif #1
---
Chain | Description
A | .
B | .
> color bychain
> sequence chain #1/A
Alignment identifier is 1/A
> sequence chain #1/B
Alignment identifier is 1/B
===== Log before crash end =====
Log:
Startup Messages
---
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR
bundle with that from NMRSTAR bundle
UCSF ChimeraX version: 1.7.1 (2024-01-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 NVIDIA-16.0.13
OpenGL renderer: NVIDIA GeForce GT 750M OpenGL Engine
OpenGL vendor: NVIDIA Corporation
Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro11,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 478.0.0.0.0
SMC Version (system): 2.19f12
Software:
System Software Overview:
System Version: macOS 11.7.10 (20G1427)
Kernel Version: Darwin 20.6.0
Time since boot: 28 days 1:52
Graphics/Displays:
Intel Iris Pro:
Chipset Model: Intel Iris Pro
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0d26
Revision ID: 0x0008
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
NVIDIA GeForce GT 750M:
Chipset Model: NVIDIA GeForce GT 750M
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 2 GB
Vendor: NVIDIA (0x10de)
Device ID: 0x0fe9
Revision ID: 0x00a2
ROM Revision: 3776
Automatic Graphics Switching: Supported
gMux Version: 4.0.8 [3.2.8]
Metal Family: Supported, Metal GPUFamily macOS 1
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.16
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.4.1
Babel: 2.14.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
blosc2: 2.0.0
build: 0.10.0
certifi: 2022.12.7
cftime: 1.6.3
charset-normalizer: 3.3.2
ChimeraX-AddCharge: 1.5.13
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.4.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.12.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.1.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.49.1
ChimeraX-AtomicLibrary: 12.1.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.10.5
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.3.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.5
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.7.1
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-Label: 1.1.8
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.1.6
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.2
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.6.1
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12.1
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.14
ChimeraX-ModelPanel: 1.4
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.1
ChimeraX-NRRD: 1.1
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.13.1
ChimeraX-PDB: 2.7.3
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.2
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.11
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.2
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.12.4
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.33.3
ChimeraX-uniprot: 2.3
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.3.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.3
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.1
contourpy: 1.2.0
cxservices: 1.2.2
cycler: 0.12.1
Cython: 0.29.33
debugpy: 1.8.0
decorator: 5.1.1
docutils: 0.19
executing: 2.0.1
filelock: 3.9.0
fonttools: 4.47.2
funcparserlib: 2.0.0a0
glfw: 2.6.4
grako: 3.16.5
h5py: 3.10.0
html2text: 2020.1.16
idna: 3.6
ihm: 0.38
imagecodecs: 2023.9.18
imagesize: 1.4.1
ipykernel: 6.23.2
ipython: 8.14.0
ipython-genutils: 0.2.0
ipywidgets: 8.1.1
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.2.0
jupyter-core: 5.7.1
jupyterlab-widgets: 3.0.9
kiwisolver: 1.4.5
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.4
matplotlib: 3.7.2
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.6.0
netCDF4: 1.6.2
networkx: 3.1
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.8
numpy: 1.25.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.2.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 4.1.0
prompt-toolkit: 3.0.43
psutil: 5.9.5
ptyprocess: 0.7.0
pure-eval: 0.2.2
py-cpuinfo: 9.0.0
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.16.1
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.2801
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2023.3.post1
pyzmq: 25.1.2
qtconsole: 5.4.3
QtPy: 2.4.1
RandomWords: 0.4.0
requests: 2.31.0
scipy: 1.11.1
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.5
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.8
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.6
sphinxcontrib-htmlhelp: 2.0.5
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.7
sphinxcontrib-serializinghtml: 1.1.10
stack-data: 0.6.3
superqt: 0.5.0
tables: 3.8.0
tcia-utils: 1.5.1
tifffile: 2023.7.18
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.4
traitlets: 5.9.0
typing-extensions: 4.9.0
tzdata: 2023.4
urllib3: 2.1.0
wcwidth: 0.2.13
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.9
Change History (2)
comment:1 by , 4 weeks ago
| Component: | Unassigned → Core |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in garbage collection |
comment:2 by , 4 weeks ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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