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Opened 3 months ago
Last modified 3 months ago
#18354 assigned defect
Installation problem
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | Eric Pettersen | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-6.14.0-27-generic-x86_64-with-glibc2.39
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/core/triggerset.py", line 149, in invoke
return self._func(self._name, data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/seqalign/__init__.py", line 56, in <lambda>
lambda *args, ses=session: settings.register_settings_options(ses))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/seqalign/settings.py", line 77, in register_settings_options
viewer_option("alignment", "small_align_viewer"),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/seqalign/settings.py", line 68, in viewer_option
raise AssertionError("Default %s not found" % attribute)
AssertionError: Default small_align_viewer not found
Error processing trigger "ready":
AssertionError: Default small_align_viewer not found
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/seqalign/settings.py", line 68, in viewer_option
raise AssertionError("Default %s not found" % attribute)
See log for complete Python traceback.
UCSF ChimeraX version: 1.10.1 (2025-07-24)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /home/solbeg/Projects/ring/assets/output/2lpb_ring.cif format mmcif
Summary of feedback from opening
/home/solbeg/Projects/ring/assets/output/2lpb_ring.cif
---
warnings | Missing first atom in struct_conn "conn1"
Missing first atom in struct_conn "conn2"
Missing first atom in struct_conn "conn3"
Missing first atom in struct_conn "conn4"
Expected gap or linking atoms for SER /B:1 and THR /B:2
Unable to connect SER /B:1 and THR /B:2
Expected gap or linking atoms for THR /B:2 and ASP /B:3
Unable to connect THR /B:2 and ASP /B:3
Expected gap or linking atoms for ASP /B:3 and SER /B:4
Unable to connect ASP /B:3 and SER /B:4
Expected gap or linking atoms for SER /B:4 and THR /B:5
Unable to connect SER /B:4 and THR /B:5
Expected gap or linking atoms for THR /B:5 and PRO /B:6
Unable to connect THR /B:5 and PRO /B:6
Expected gap or linking atoms for PRO /B:6 and MET /B:7
Unable to connect PRO /B:6 and MET /B:7
Expected gap or linking atoms for MET /B:7 and PHE /B:8
Unable to connect MET /B:7 and PHE /B:8
Expected gap or linking atoms for PHE /B:8 and GLU /B:9
Unable to connect PHE /B:8 and GLU /B:9
Expected gap or linking atoms for GLU /B:9 and TYR /B:10
Unable to connect GLU /B:9 and TYR /B:10
Expected gap or linking atoms for TYR /B:10 and GLU /B:11
Unable to connect TYR /B:10 and GLU /B:11
Expected gap or linking atoms for GLU /B:11 and ASN /B:12
Unable to connect GLU /B:11 and ASN /B:12
Expected gap or linking atoms for ASN /B:12 and LEU /B:13
Unable to connect ASN /B:12 and LEU /B:13
Expected gap or linking atoms for LEU /B:13 and GLU /B:14
Unable to connect LEU /B:13 and GLU /B:14
Expected gap or linking atoms for GLU /B:14 and ASP /B:15
Unable to connect GLU /B:14 and ASP /B:15
Expected gap or linking atoms for ASP /B:15 and ASN /B:16
Unable to connect ASP /B:15 and ASN /B:16
Expected gap or linking atoms for ASN /B:16 and SER /B:17
Unable to connect ASN /B:16 and SER /B:17
Expected gap or linking atoms for SER /B:17 and LYS /B:18
Unable to connect SER /B:17 and LYS /B:18
Expected gap or linking atoms for LYS /B:18 and GLU /B:19
Unable to connect LYS /B:18 and GLU /B:19
Expected gap or linking atoms for GLU /B:19 and TRP /B:20
Unable to connect GLU /B:19 and TRP /B:20
Expected gap or linking atoms for TRP /B:20 and THR /B:21
Unable to connect TRP /B:20 and THR /B:21
Expected gap or linking atoms for THR /B:21 and SER /B:22
Unable to connect THR /B:21 and SER /B:22
Expected gap or linking atoms for SER /B:22 and LEU /B:23
Unable to connect SER /B:22 and LEU /B:23
Expected gap or linking atoms for LEU /B:23 and PHE /B:24
Unable to connect LEU /B:23 and PHE /B:24
Expected gap or linking atoms for PHE /B:24 and ASP /B:25
Unable to connect PHE /B:24 and ASP /B:25
Expected gap or linking atoms for ASP /B:25 and ASN /B:26
Unable to connect ASP /B:25 and ASN /B:26
Expected gap or linking atoms for ASN /B:26 and ASP /B:27
Unable to connect ASN /B:26 and ASP /B:27
Expected gap or linking atoms for ASP /B:27 and ILE /B:28
Unable to connect ASP /B:27 and ILE /B:28
Expected gap or linking atoms for ILE /B:28 and PRO /B:29
Unable to connect ILE /B:28 and PRO /B:29
Expected gap or linking atoms for PRO /B:29 and VAL /B:30
Unable to connect PRO /B:29 and VAL /B:30
Expected gap or linking atoms for VAL /B:30 and THR /B:31
Unable to connect VAL /B:30 and THR /B:31
Expected gap or linking atoms for THR /B:31 and THR /B:32
Unable to connect THR /B:31 and THR /B:32
Expected gap or linking atoms for THR /B:32 and ASP /B:33
Unable to connect THR /B:32 and ASP /B:33
Expected gap or linking atoms for ASP /B:33 and ASP /B:34
Unable to connect ASP /B:33 and ASP /B:34
Expected gap or linking atoms for GLN /A:1 and ARG /A:2
Unable to connect GLN /A:1 and ARG /A:2
Expected gap or linking atoms for ARG /A:2 and ARG /A:3
Unable to connect ARG /A:2 and ARG /A:3
Expected gap or linking atoms for ARG /A:3 and GLN /A:4
Unable to connect ARG /A:3 and GLN /A:4
Expected gap or linking atoms for GLN /A:4 and LEU /A:5
Unable to connect GLN /A:4 and LEU /A:5
Expected gap or linking atoms for LEU /A:5 and THR /A:6
Unable to connect LEU /A:5 and THR /A:6
Expected gap or linking atoms for THR /A:6 and PRO /A:7
Unable to connect THR /A:6 and PRO /A:7
Expected gap or linking atoms for PRO /A:7 and GLN /A:8
Unable to connect PRO /A:7 and GLN /A:8
Expected gap or linking atoms for GLN /A:8 and GLN /A:9
Unable to connect GLN /A:8 and GLN /A:9
Expected gap or linking atoms for GLN /A:9 and GLN /A:10
Unable to connect GLN /A:9 and GLN /A:10
Expected gap or linking atoms for GLN /A:10 and GLN /A:11
Unable to connect GLN /A:10 and GLN /A:11
Expected gap or linking atoms for GLN /A:11 and LEU /A:12
Unable to connect GLN /A:11 and LEU /A:12
Expected gap or linking atoms for LEU /A:12 and VAL /A:13
Unable to connect LEU /A:12 and VAL /A:13
Expected gap or linking atoms for VAL /A:13 and ASN /A:14
Unable to connect VAL /A:13 and ASN /A:14
Expected gap or linking atoms for ASN /A:14 and GLN /A:15
Unable to connect ASN /A:14 and GLN /A:15
Expected gap or linking atoms for GLN /A:15 and MET /A:16
Unable to connect GLN /A:15 and MET /A:16
Expected gap or linking atoms for MET /A:16 and LYS /A:17
Unable to connect MET /A:16 and LYS /A:17
Expected gap or linking atoms for LYS /A:17 and VAL /A:18
Unable to connect LYS /A:17 and VAL /A:18
Expected gap or linking atoms for VAL /A:18 and ALA /A:19
Unable to connect VAL /A:18 and ALA /A:19
Expected gap or linking atoms for ALA /A:19 and PRO /A:20
Unable to connect ALA /A:19 and PRO /A:20
Expected gap or linking atoms for PRO /A:20 and ILE /A:21
Unable to connect PRO /A:20 and ILE /A:21
Expected gap or linking atoms for ILE /A:21 and PRO /A:22
Unable to connect ILE /A:21 and PRO /A:22
Expected gap or linking atoms for PRO /A:22 and LYS /A:23
Unable to connect PRO /A:22 and LYS /A:23
Expected gap or linking atoms for LYS /A:23 and GLN /A:24
Unable to connect LYS /A:23 and GLN /A:24
Expected gap or linking atoms for GLN /A:24 and LEU /A:25
Unable to connect GLN /A:24 and LEU /A:25
Expected gap or linking atoms for LEU /A:25 and LEU /A:26
Unable to connect LEU /A:25 and LEU /A:26
Expected gap or linking atoms for LEU /A:26 and GLN /A:27
Unable to connect LEU /A:26 and GLN /A:27
Expected gap or linking atoms for GLN /A:27 and ARG /A:28
Unable to connect GLN /A:27 and ARG /A:28
Expected gap or linking atoms for ARG /A:28 and ILE /A:29
Unable to connect ARG /A:28 and ILE /A:29
Expected gap or linking atoms for ILE /A:29 and PRO /A:30
Unable to connect ILE /A:29 and PRO /A:30
Expected gap or linking atoms for PRO /A:30 and ASN /A:31
Unable to connect PRO /A:30 and ASN /A:31
Expected gap or linking atoms for ASN /A:31 and ILE /A:32
Unable to connect ASN /A:31 and ILE /A:32
Expected gap or linking atoms for ILE /A:32 and PRO /A:33
Unable to connect ILE /A:32 and PRO /A:33
Expected gap or linking atoms for PRO /A:33 and PRO /A:34
Unable to connect PRO /A:33 and PRO /A:34
Expected gap or linking atoms for PRO /A:34 and ASN /A:35
Unable to connect PRO /A:34 and ASN /A:35
Expected gap or linking atoms for ASN /A:35 and ILE /A:36
Unable to connect ASN /A:35 and ILE /A:36
Expected gap or linking atoms for ILE /A:36 and ASN /A:37
Unable to connect ILE /A:36 and ASN /A:37
Expected gap or linking atoms for ASN /A:37 and THR /A:38
Unable to connect ASN /A:37 and THR /A:38
Expected gap or linking atoms for THR /A:38 and TRP /A:39
Unable to connect THR /A:38 and TRP /A:39
Expected gap or linking atoms for TRP /A:39 and GLN /A:40
Unable to connect TRP /A:39 and GLN /A:40
Expected gap or linking atoms for GLN /A:40 and GLN /A:41
Unable to connect GLN /A:40 and GLN /A:41
Expected gap or linking atoms for GLN /A:41 and VAL /A:42
Unable to connect GLN /A:41 and VAL /A:42
Expected gap or linking atoms for VAL /A:42 and THR /A:43
Unable to connect VAL /A:42 and THR /A:43
Expected gap or linking atoms for THR /A:43 and ALA /A:44
Unable to connect THR /A:43 and ALA /A:44
Expected gap or linking atoms for ALA /A:44 and LEU /A:45
Unable to connect ALA /A:44 and LEU /A:45
Expected gap or linking atoms for LEU /A:45 and ALA /A:46
Unable to connect LEU /A:45 and ALA /A:46
Expected gap or linking atoms for ALA /A:46 and GLN /A:47
Unable to connect ALA /A:46 and GLN /A:47
Expected gap or linking atoms for GLN /A:47 and GLN /A:48
Unable to connect GLN /A:47 and GLN /A:48
Expected gap or linking atoms for GLN /A:48 and LYS /A:49
Unable to connect GLN /A:48 and LYS /A:49
Expected gap or linking atoms for LYS /A:49 and LEU /A:50
Unable to connect LYS /A:49 and LEU /A:50
Expected gap or linking atoms for LEU /A:50 and LEU /A:51
Unable to connect LEU /A:50 and LEU /A:51
Expected gap or linking atoms for LEU /A:51 and THR /A:52
Unable to connect LEU /A:51 and THR /A:52
Expected gap or linking atoms for THR /A:52 and PRO /A:53
Unable to connect THR /A:52 and PRO /A:53
Expected gap or linking atoms for PRO /A:53 and GLN /A:54
Unable to connect PRO /A:53 and GLN /A:54
Expected gap or linking atoms for GLN /A:54 and ASP /A:55
Unable to connect GLN /A:54 and ASP /A:55
Expected gap or linking atoms for ASP /A:55 and MET /A:56
Unable to connect ASP /A:55 and MET /A:56
Expected gap or linking atoms for MET /A:56 and GLU /A:57
Unable to connect MET /A:56 and GLU /A:57
Expected gap or linking atoms for GLU /A:57 and ALA /A:58
Unable to connect GLU /A:57 and ALA /A:58
Expected gap or linking atoms for ALA /A:58 and ALA /A:59
Unable to connect ALA /A:58 and ALA /A:59
Expected gap or linking atoms for ALA /A:59 and LYS /A:60
Unable to connect ALA /A:59 and LYS /A:60
Expected gap or linking atoms for LYS /A:60 and GLU /A:61
Unable to connect LYS /A:60 and GLU /A:61
Expected gap or linking atoms for GLU /A:61 and VAL /A:62
Unable to connect GLU /A:61 and VAL /A:62
Expected gap or linking atoms for VAL /A:62 and TYR /A:63
Unable to connect VAL /A:62 and TYR /A:63
Expected gap or linking atoms for TYR /A:63 and LYS /A:64
Unable to connect TYR /A:63 and LYS /A:64
Expected gap or linking atoms for LYS /A:64 and ILE /A:65
Unable to connect LYS /A:64 and ILE /A:65
Expected gap or linking atoms for ILE /A:65 and HIS /A:66
Unable to connect ILE /A:65 and HIS /A:66
Expected gap or linking atoms for HIS /A:66 and GLN /A:67
Unable to connect HIS /A:66 and GLN /A:67
Expected gap or linking atoms for GLN /A:67 and GLN /A:68
Unable to connect GLN /A:67 and GLN /A:68
Expected gap or linking atoms for GLN /A:68 and LEU /A:69
Unable to connect GLN /A:68 and LEU /A:69
Expected gap or linking atoms for LEU /A:69 and LEU /A:70
Unable to connect LEU /A:69 and LEU /A:70
Expected gap or linking atoms for LEU /A:70 and PHE /A:71
Unable to connect LEU /A:70 and PHE /A:71
Expected gap or linking atoms for PHE /A:71 and LYS /A:72
Unable to connect PHE /A:71 and LYS /A:72
Expected gap or linking atoms for LYS /A:72 and ALA /A:73
Unable to connect LYS /A:72 and ALA /A:73
Expected gap or linking atoms for ALA /A:73 and ARG /A:74
Unable to connect ALA /A:73 and ARG /A:74
Expected gap or linking atoms for ARG /A:74 and LEU /A:75
Unable to connect ARG /A:74 and LEU /A:75
Expected gap or linking atoms for LEU /A:75 and GLN /A:76
Unable to connect LEU /A:75 and GLN /A:76
Expected gap or linking atoms for GLN /A:76 and GLN /A:77
Unable to connect GLN /A:76 and GLN /A:77
Expected gap or linking atoms for GLN /A:77 and GLN /A:78
Unable to connect GLN /A:77 and GLN /A:78
Expected gap or linking atoms for GLN /A:78 and GLN /A:79
Unable to connect GLN /A:78 and GLN /A:79
Expected gap or linking atoms for GLN /A:79 and ALA /A:80
Unable to connect GLN /A:79 and ALA /A:80
Expected gap or linking atoms for ALA /A:80 and GLN /A:81
Unable to connect ALA /A:80 and GLN /A:81
Atom H is not in the residue template for GLN /A:1
Atom H has no neighbors to form bonds with according to residue template for
ARG /A:2
Atom HA has no neighbors to form bonds with according to residue template for
ARG /A:2
Atom HB2 has no neighbors to form bonds with according to residue template for
ARG /A:2
Atom HB3 has no neighbors to form bonds with according to residue template for
ARG /A:2
Atom HG2 has no neighbors to form bonds with according to residue template for
ARG /A:2
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ARG /A:3
Atom HA has no neighbors to form bonds with according to residue template for
ARG /A:3
Atom HB2 has no neighbors to form bonds with according to residue template for
ARG /A:3
Atom HB3 has no neighbors to form bonds with according to residue template for
ARG /A:3
Atom HG2 has no neighbors to form bonds with according to residue template for
ARG /A:3
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:4
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:4
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:4
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:4
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:4
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:5
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:5
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:5
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:5
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:5
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /A:6
Atom HA has no neighbors to form bonds with according to residue template for
THR /A:6
Atom HB has no neighbors to form bonds with according to residue template for
THR /A:6
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /A:6
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /A:6
2 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:7
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:7
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:7
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:7
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:7
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:8
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:8
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:8
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:8
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:8
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:9
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:9
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:9
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:9
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:9
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:10
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:10
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:10
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:10
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:10
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:11
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:11
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:11
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:11
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:11
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:12
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:12
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:12
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:12
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:12
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
VAL /A:13
Atom HA has no neighbors to form bonds with according to residue template for
VAL /A:13
Atom HB has no neighbors to form bonds with according to residue template for
VAL /A:13
Atom HG11 has no neighbors to form bonds with according to residue template
for VAL /A:13
Atom HG12 has no neighbors to form bonds with according to residue template
for VAL /A:13
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASN /A:14
Atom HA has no neighbors to form bonds with according to residue template for
ASN /A:14
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /A:14
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /A:14
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /A:14
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:15
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:15
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:15
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:15
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:15
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
MET /A:16
Atom HA has no neighbors to form bonds with according to residue template for
MET /A:16
Atom HB2 has no neighbors to form bonds with according to residue template for
MET /A:16
Atom HB3 has no neighbors to form bonds with according to residue template for
MET /A:16
Atom HG2 has no neighbors to form bonds with according to residue template for
MET /A:16
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:17
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:17
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:17
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:17
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:17
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
VAL /A:18
Atom HA has no neighbors to form bonds with according to residue template for
VAL /A:18
Atom HB has no neighbors to form bonds with according to residue template for
VAL /A:18
Atom HG11 has no neighbors to form bonds with according to residue template
for VAL /A:18
Atom HG12 has no neighbors to form bonds with according to residue template
for VAL /A:18
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:19
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:19
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:19
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:19
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:19
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:20
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:20
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:20
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:20
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:20
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ILE /A:21
Atom HA has no neighbors to form bonds with according to residue template for
ILE /A:21
Atom HB has no neighbors to form bonds with according to residue template for
ILE /A:21
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /A:21
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /A:21
6 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:22
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:22
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:22
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:22
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:22
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:23
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:23
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:23
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:23
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:23
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:24
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:24
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:24
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:24
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:24
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:25
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:25
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:25
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:25
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:25
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:26
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:26
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:26
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:26
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:26
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:27
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:27
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:27
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:27
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:27
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ARG /A:28
Atom HA has no neighbors to form bonds with according to residue template for
ARG /A:28
Atom HB2 has no neighbors to form bonds with according to residue template for
ARG /A:28
Atom HB3 has no neighbors to form bonds with according to residue template for
ARG /A:28
Atom HG2 has no neighbors to form bonds with according to residue template for
ARG /A:28
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ILE /A:29
Atom HA has no neighbors to form bonds with according to residue template for
ILE /A:29
Atom HB has no neighbors to form bonds with according to residue template for
ILE /A:29
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /A:29
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /A:29
6 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:30
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:30
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:30
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:30
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:30
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASN /A:31
Atom HA has no neighbors to form bonds with according to residue template for
ASN /A:31
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /A:31
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /A:31
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /A:31
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ILE /A:32
Atom HA has no neighbors to form bonds with according to residue template for
ILE /A:32
Atom HB has no neighbors to form bonds with according to residue template for
ILE /A:32
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /A:32
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /A:32
6 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:33
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:33
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:33
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:33
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:33
2 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:34
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:34
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:34
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:34
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:34
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASN /A:35
Atom HA has no neighbors to form bonds with according to residue template for
ASN /A:35
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /A:35
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /A:35
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /A:35
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ILE /A:36
Atom HA has no neighbors to form bonds with according to residue template for
ILE /A:36
Atom HB has no neighbors to form bonds with according to residue template for
ILE /A:36
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /A:36
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /A:36
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASN /A:37
Atom HA has no neighbors to form bonds with according to residue template for
ASN /A:37
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /A:37
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /A:37
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /A:37
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /A:38
Atom HA has no neighbors to form bonds with according to residue template for
THR /A:38
Atom HB has no neighbors to form bonds with according to residue template for
THR /A:38
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /A:38
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /A:38
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
TRP /A:39
Atom HA has no neighbors to form bonds with according to residue template for
TRP /A:39
Atom HB2 has no neighbors to form bonds with according to residue template for
TRP /A:39
Atom HB3 has no neighbors to form bonds with according to residue template for
TRP /A:39
Atom HD1 has no neighbors to form bonds with according to residue template for
TRP /A:39
5 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:40
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:40
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:40
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:40
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:40
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:41
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:41
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:41
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:41
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:41
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
VAL /A:42
Atom HA has no neighbors to form bonds with according to residue template for
VAL /A:42
Atom HB has no neighbors to form bonds with according to residue template for
VAL /A:42
Atom HG11 has no neighbors to form bonds with according to residue template
for VAL /A:42
Atom HG12 has no neighbors to form bonds with according to residue template
for VAL /A:42
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /A:43
Atom HA has no neighbors to form bonds with according to residue template for
THR /A:43
Atom HB has no neighbors to form bonds with according to residue template for
THR /A:43
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /A:43
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /A:43
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:44
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:44
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:44
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:44
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:44
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:45
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:45
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:45
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:45
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:45
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:46
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:46
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:46
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:46
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:46
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:47
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:47
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:47
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:47
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:47
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:48
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:48
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:48
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:48
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:48
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:49
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:49
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:49
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:49
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:49
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:50
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:50
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:50
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:50
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:50
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:51
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:51
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:51
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:51
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:51
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /A:52
Atom HA has no neighbors to form bonds with according to residue template for
THR /A:52
Atom HB has no neighbors to form bonds with according to residue template for
THR /A:52
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /A:52
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /A:52
2 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /A:53
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /A:53
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /A:53
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /A:53
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /A:53
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:54
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:54
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:54
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:54
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:54
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /A:55
Atom HA has no neighbors to form bonds with according to residue template for
ASP /A:55
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /A:55
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /A:55
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /A:55
Atom H has no neighbors to form bonds with according to residue template for
MET /A:56
Atom HA has no neighbors to form bonds with according to residue template for
MET /A:56
Atom HB2 has no neighbors to form bonds with according to residue template for
MET /A:56
Atom HB3 has no neighbors to form bonds with according to residue template for
MET /A:56
Atom HG2 has no neighbors to form bonds with according to residue template for
MET /A:56
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /A:57
Atom HA has no neighbors to form bonds with according to residue template for
GLU /A:57
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /A:57
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /A:57
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /A:57
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:58
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:58
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:58
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:58
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:58
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:59
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:59
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:59
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:59
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:59
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:60
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:60
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:60
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:60
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:60
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /A:61
Atom HA has no neighbors to form bonds with according to residue template for
GLU /A:61
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /A:61
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /A:61
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /A:61
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
VAL /A:62
Atom HA has no neighbors to form bonds with according to residue template for
VAL /A:62
Atom HB has no neighbors to form bonds with according to residue template for
VAL /A:62
Atom HG11 has no neighbors to form bonds with according to residue template
for VAL /A:62
Atom HG12 has no neighbors to form bonds with according to residue template
for VAL /A:62
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
TYR /A:63
Atom HA has no neighbors to form bonds with according to residue template for
TYR /A:63
Atom HB2 has no neighbors to form bonds with according to residue template for
TYR /A:63
Atom HB3 has no neighbors to form bonds with according to residue template for
TYR /A:63
Atom HD1 has no neighbors to form bonds with according to residue template for
TYR /A:63
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:64
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:64
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:64
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:64
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:64
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ILE /A:65
Atom HA has no neighbors to form bonds with according to residue template for
ILE /A:65
Atom HB has no neighbors to form bonds with according to residue template for
ILE /A:65
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /A:65
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /A:65
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
HIS /A:66
Atom HA has no neighbors to form bonds with according to residue template for
HIS /A:66
Atom HB2 has no neighbors to form bonds with according to residue template for
HIS /A:66
Atom HB3 has no neighbors to form bonds with according to residue template for
HIS /A:66
Atom HD1 has no neighbors to form bonds with according to residue template for
HIS /A:66
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:67
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:67
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:67
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:67
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:67
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:68
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:68
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:68
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:68
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:68
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:69
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:69
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:69
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:69
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:69
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:70
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:70
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:70
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:70
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:70
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
PHE /A:71
Atom HA has no neighbors to form bonds with according to residue template for
PHE /A:71
Atom HB2 has no neighbors to form bonds with according to residue template for
PHE /A:71
Atom HB3 has no neighbors to form bonds with according to residue template for
PHE /A:71
Atom HD1 has no neighbors to form bonds with according to residue template for
PHE /A:71
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LYS /A:72
Atom HA has no neighbors to form bonds with according to residue template for
LYS /A:72
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /A:72
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /A:72
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /A:72
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:73
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:73
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:73
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:73
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:73
Atom H has no neighbors to form bonds with according to residue template for
ARG /A:74
Atom HA has no neighbors to form bonds with according to residue template for
ARG /A:74
Atom HB2 has no neighbors to form bonds with according to residue template for
ARG /A:74
Atom HB3 has no neighbors to form bonds with according to residue template for
ARG /A:74
Atom HG2 has no neighbors to form bonds with according to residue template for
ARG /A:74
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /A:75
Atom HA has no neighbors to form bonds with according to residue template for
LEU /A:75
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /A:75
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /A:75
Atom HG has no neighbors to form bonds with according to residue template for
LEU /A:75
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:76
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:76
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:76
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:76
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:76
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:77
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:77
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:77
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:77
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:77
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:78
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:78
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:78
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:78
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:78
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:79
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:79
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:79
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:79
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:79
3 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ALA /A:80
Atom HA has no neighbors to form bonds with according to residue template for
ALA /A:80
Atom HB1 has no neighbors to form bonds with according to residue template for
ALA /A:80
Atom HB2 has no neighbors to form bonds with according to residue template for
ALA /A:80
Atom HB3 has no neighbors to form bonds with according to residue template for
ALA /A:80
Atom H has no neighbors to form bonds with according to residue template for
GLN /A:81
Atom HA has no neighbors to form bonds with according to residue template for
GLN /A:81
Atom HB2 has no neighbors to form bonds with according to residue template for
GLN /A:81
Atom HB3 has no neighbors to form bonds with according to residue template for
GLN /A:81
Atom HG2 has no neighbors to form bonds with according to residue template for
GLN /A:81
4 messages similar to the above omitted
Atom H is not in the residue template for SER /B:1
Atom H has no neighbors to form bonds with according to residue template for
THR /B:2
Atom HA has no neighbors to form bonds with according to residue template for
THR /B:2
Atom HB has no neighbors to form bonds with according to residue template for
THR /B:2
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /B:2
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /B:2
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:3
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:3
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:3
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:3
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:3
Atom H has no neighbors to form bonds with according to residue template for
SER /B:4
Atom HA has no neighbors to form bonds with according to residue template for
SER /B:4
Atom HB2 has no neighbors to form bonds with according to residue template for
SER /B:4
Atom HB3 has no neighbors to form bonds with according to residue template for
SER /B:4
Atom HG has no neighbors to form bonds with according to residue template for
SER /B:4
Atom H has no neighbors to form bonds with according to residue template for
THR /B:5
Atom HA has no neighbors to form bonds with according to residue template for
THR /B:5
Atom HB has no neighbors to form bonds with according to residue template for
THR /B:5
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /B:5
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /B:5
2 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /B:6
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /B:6
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /B:6
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /B:6
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /B:6
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
MET /B:7
Atom HA has no neighbors to form bonds with according to residue template for
MET /B:7
Atom HB2 has no neighbors to form bonds with according to residue template for
MET /B:7
Atom HB3 has no neighbors to form bonds with according to residue template for
MET /B:7
Atom HG2 has no neighbors to form bonds with according to residue template for
MET /B:7
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
PHE /B:8
Atom HA has no neighbors to form bonds with according to residue template for
PHE /B:8
Atom HB2 has no neighbors to form bonds with according to residue template for
PHE /B:8
Atom HB3 has no neighbors to form bonds with according to residue template for
PHE /B:8
Atom HD1 has no neighbors to form bonds with according to residue template for
PHE /B:8
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /B:9
Atom HA has no neighbors to form bonds with according to residue template for
GLU /B:9
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /B:9
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /B:9
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /B:9
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
TYR /B:10
Atom HA has no neighbors to form bonds with according to residue template for
TYR /B:10
Atom HB2 has no neighbors to form bonds with according to residue template for
TYR /B:10
Atom HB3 has no neighbors to form bonds with according to residue template for
TYR /B:10
Atom HD1 has no neighbors to form bonds with according to residue template for
TYR /B:10
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /B:11
Atom HA has no neighbors to form bonds with according to residue template for
GLU /B:11
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /B:11
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /B:11
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /B:11
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASN /B:12
Atom HA has no neighbors to form bonds with according to residue template for
ASN /B:12
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /B:12
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /B:12
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /B:12
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
LEU /B:13
Atom HA has no neighbors to form bonds with according to residue template for
LEU /B:13
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /B:13
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /B:13
Atom HG has no neighbors to form bonds with according to residue template for
LEU /B:13
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /B:14
Atom HA has no neighbors to form bonds with according to residue template for
GLU /B:14
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /B:14
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /B:14
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /B:14
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:15
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:15
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:15
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:15
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:15
Atom H has no neighbors to form bonds with according to residue template for
ASN /B:16
Atom HA has no neighbors to form bonds with according to residue template for
ASN /B:16
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /B:16
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /B:16
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /B:16
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
SER /B:17
Atom HA has no neighbors to form bonds with according to residue template for
SER /B:17
Atom HB2 has no neighbors to form bonds with according to residue template for
SER /B:17
Atom HB3 has no neighbors to form bonds with according to residue template for
SER /B:17
Atom HG has no neighbors to form bonds with according to residue template for
SER /B:17
Atom H has no neighbors to form bonds with according to residue template for
LYS /B:18
Atom HA has no neighbors to form bonds with according to residue template for
LYS /B:18
Atom HB2 has no neighbors to form bonds with according to residue template for
LYS /B:18
Atom HB3 has no neighbors to form bonds with according to residue template for
LYS /B:18
Atom HG2 has no neighbors to form bonds with according to residue template for
LYS /B:18
8 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
GLU /B:19
Atom HA has no neighbors to form bonds with according to residue template for
GLU /B:19
Atom HB2 has no neighbors to form bonds with according to residue template for
GLU /B:19
Atom HB3 has no neighbors to form bonds with according to residue template for
GLU /B:19
Atom HG2 has no neighbors to form bonds with according to residue template for
GLU /B:19
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
TRP /B:20
Atom HA has no neighbors to form bonds with according to residue template for
TRP /B:20
Atom HB2 has no neighbors to form bonds with according to residue template for
TRP /B:20
Atom HB3 has no neighbors to form bonds with according to residue template for
TRP /B:20
Atom HD1 has no neighbors to form bonds with according to residue template for
TRP /B:20
5 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /B:21
Atom HA has no neighbors to form bonds with according to residue template for
THR /B:21
Atom HB has no neighbors to form bonds with according to residue template for
THR /B:21
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /B:21
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /B:21
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
SER /B:22
Atom HA has no neighbors to form bonds with according to residue template for
SER /B:22
Atom HB2 has no neighbors to form bonds with according to residue template for
SER /B:22
Atom HB3 has no neighbors to form bonds with according to residue template for
SER /B:22
Atom HG has no neighbors to form bonds with according to residue template for
SER /B:22
Atom H has no neighbors to form bonds with according to residue template for
LEU /B:23
Atom HA has no neighbors to form bonds with according to residue template for
LEU /B:23
Atom HB2 has no neighbors to form bonds with according to residue template for
LEU /B:23
Atom HB3 has no neighbors to form bonds with according to residue template for
LEU /B:23
Atom HG has no neighbors to form bonds with according to residue template for
LEU /B:23
6 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
PHE /B:24
Atom HA has no neighbors to form bonds with according to residue template for
PHE /B:24
Atom HB2 has no neighbors to form bonds with according to residue template for
PHE /B:24
Atom HB3 has no neighbors to form bonds with according to residue template for
PHE /B:24
Atom HD1 has no neighbors to form bonds with according to residue template for
PHE /B:24
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:25
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:25
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:25
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:25
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:25
Atom H has no neighbors to form bonds with according to residue template for
ASN /B:26
Atom HA has no neighbors to form bonds with according to residue template for
ASN /B:26
Atom HB2 has no neighbors to form bonds with according to residue template for
ASN /B:26
Atom HB3 has no neighbors to form bonds with according to residue template for
ASN /B:26
Atom HD21 has no neighbors to form bonds with according to residue template
for ASN /B:26
1 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:27
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:27
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:27
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:27
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:27
Atom H has no neighbors to form bonds with according to residue template for
ILE /B:28
Atom HA has no neighbors to form bonds with according to residue template for
ILE /B:28
Atom HB has no neighbors to form bonds with according to residue template for
ILE /B:28
Atom HG12 has no neighbors to form bonds with according to residue template
for ILE /B:28
Atom HG13 has no neighbors to form bonds with according to residue template
for ILE /B:28
6 messages similar to the above omitted
Atom HA has no neighbors to form bonds with according to residue template for
PRO /B:29
Atom HB2 has no neighbors to form bonds with according to residue template for
PRO /B:29
Atom HB3 has no neighbors to form bonds with according to residue template for
PRO /B:29
Atom HG2 has no neighbors to form bonds with according to residue template for
PRO /B:29
Atom HG3 has no neighbors to form bonds with according to residue template for
PRO /B:29
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
VAL /B:30
Atom HA has no neighbors to form bonds with according to residue template for
VAL /B:30
Atom HB has no neighbors to form bonds with according to residue template for
VAL /B:30
Atom HG11 has no neighbors to form bonds with according to residue template
for VAL /B:30
Atom HG12 has no neighbors to form bonds with according to residue template
for VAL /B:30
4 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /B:31
Atom HA has no neighbors to form bonds with according to residue template for
THR /B:31
Atom HB has no neighbors to form bonds with according to residue template for
THR /B:31
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /B:31
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /B:31
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
THR /B:32
Atom HA has no neighbors to form bonds with according to residue template for
THR /B:32
Atom HB has no neighbors to form bonds with according to residue template for
THR /B:32
Atom HG1 has no neighbors to form bonds with according to residue template for
THR /B:32
Atom HG21 has no neighbors to form bonds with according to residue template
for THR /B:32
2 messages similar to the above omitted
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:33
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:33
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:33
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:33
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:33
Atom H has no neighbors to form bonds with according to residue template for
ASP /B:34
Atom HA has no neighbors to form bonds with according to residue template for
ASP /B:34
Atom HB2 has no neighbors to form bonds with according to residue template for
ASP /B:34
Atom HB3 has no neighbors to form bonds with according to residue template for
ASP /B:34
Atom HD2 has no neighbors to form bonds with according to residue template for
ASP /B:34
1 messages similar to the above omitted
Chain information for 2lpb_ring.cif #1
---
Chain | Description
A | Mediator of RNA polymerase II transcription subunit 15
B | General control protein GCN4
> info bonds
Expected a models specifier or a keyword
OpenGL version: 3.3.0 NVIDIA 570.172.08
OpenGL renderer: NVIDIA GeForce RTX 4070 Ti SUPER/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: HP
Model: OMEN 35L GT16-0xxx
OS: Ubuntu 24.04
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 7 8700G w/ Radeon 780M Graphics
Cache Size: 1024 KB
Memory:
total used free shared buff/cache available
Mem: 30Gi 10Gi 7.6Gi 395Mi 13Gi 20Gi
Swap: 8.0Gi 0B 8.0Gi
Graphics:
01:00.0 VGA compatible controller [0300]: NVIDIA Corporation AD103 [GeForce RTX 4070 Ti SUPER] [10de:2705] (rev a1)
Subsystem: Hewlett-Packard Company Device [103c:8cfe]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.17.0
babel: 2.16.0
beautifulsoup4: 4.13.3
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.6.1
blosc2: 3.0.0
build: 1.2.2.post1
build: 1.2.1
certifi: 2025.7.14
certifi: 2024.8.30
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
charset-normalizer: 3.4.2
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddCharge: 1.5.19
ChimeraX-AddH: 2.2.7
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-Alignments: 2.20.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.4
ChimeraX-Arrays: 1.1
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-Atomic: 1.60.7
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomicLibrary: 14.1.19
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.5.1
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.2
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-CommandLine: 1.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.7
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.6.2
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-Label: 1.1.14
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.2.2
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.10.1
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.19
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5.1
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDB: 2.7.10
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PresetMgr: 1.1.3
ChimeraX-ProfileGrids: 1.1.3
ChimeraX-PubChem: 2.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-SeqView: 2.17.1
ChimeraX-Shape: 1.0.1
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-UI: 1.45.2
ChimeraX-Umap: 1.0
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
contourpy: 1.3.2
coverage: 7.10.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
Cython: 3.0.12
debugpy: 1.8.15
debugpy: 1.8.9
decorator: 5.2.1
decorator: 5.1.1
distro: 1.9.0
docutils: 0.21.2
executing: 2.1.0
executing: 2.2.0
filelock: 3.18.0
filelock: 3.15.4
fonttools: 4.59.0
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.9.0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 2.2
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.1.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
ipywidgets: 8.1.7
jedi: 0.19.1
Jinja2: 3.1.4
Jinja2: 3.1.6
jupyter_client: 8.6.3
jupyter_client: 8.6.2
jupyter_core: 5.8.1
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.15
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.8
kiwisolver: 1.4.7
line_profiler: 4.1.3
line_profiler: 4.2.0
lxml: 5.2.2
lxml: 5.3.1
lz4: 4.3.3
lz4: 4.3.2
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib: 3.10.1
matplotlib-inline: 0.1.7
msgpack: 1.0.8
msgpack: 1.1.0
ndindex: 1.9.2
ndindex: 1.10.0
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.11.0
numexpr: 2.10.2
numpy: 1.26.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 24.2
packaging: 23.2
ParmEd: 4.2.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.8
platformdirs: 4.3.6
pluggy: 1.6.0
prompt_toolkit: 3.0.51
prompt_toolkit: 3.0.48
psutil: 6.0.0
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.4
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyopenxr: 1.0.3401
pyparsing: 3.2.3
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6: 6.8.1
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.8.2
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine: 6.8.0
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
PyQt6_sip: 13.10.0
pytest: 8.4.1
pytest-cov: 6.2.1
python-dateutil: 2.9.0.post0
pytz: 2024.2
pytz: 2025.2
pyzmq: 26.2.0
pyzmq: 27.0.0
qtconsole: 5.5.2
QtPy: 2.4.2
QtPy: 2.4.3
qtshim: 1.1
qtshim: 1.0
RandomWords: 0.4.0
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scipy: 1.14.0
setuptools: 72.1.0
setuptools: 78.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.7
soupsieve: 2.6
Sphinx: 8.2.3
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
superqt: 0.6.3
tables: 3.10.2
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tifffile: 2025.3.13
tinyarray: 1.2.4
tornado: 6.4.2
tornado: 6.5.1
traitlets: 5.14.3
typing_extensions: 4.12.2
typing_extensions: 4.14.1
tzdata: 2025.2
tzdata: 2024.2
urllib3: 2.2.3
urllib3: 2.5.0
wcwidth: 0.2.13
webcolors: 24.6.0
webcolors: 24.11.1
wheel: 0.43.0
wheel: 0.45.1
wheel-filename: 1.4.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.14
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 3 months ago
| Component: | Unassigned → Sequence |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Default small_align_viewer not found |
comment:2 by , 3 months ago
| Cc: | added |
|---|---|
| Component: | Sequence → Platform |
| Owner: | changed from to |
| Status: | accepted → assigned |
| Summary: | Default small_align_viewer not found → Installation problem |
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Why do all the installed ChimeraX packages report two version numbers?