![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Closed 3 months ago
#18322 closed defect (duplicate)
Crash on Mac waking from sleep
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-14.5-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault
Current thread 0x00000001f11c0c00 (most recent call first):
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py", line 330 in event_loop
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1054 in init
File "/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.surface._surface, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 58)
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{
"uptime" : 31000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "Mac15,12",
"coalitionID" : 2472,
"osVersion" : {
"train" : "macOS 14.5",
"build" : "23F79",
"releaseType" : "User"
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"captureTime" : "2025-07-30 20:08:07.0063 +0200",
"codeSigningMonitor" : 1,
"incident" : "D6B173C5-67A6-4396-A0DF-5EFC12D8B17A",
"pid" : 1726,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2025-07-30 12:21:56.8228 +0200",
"procStartAbsTime" : 167682610134,
"procExitAbsTime" : 767292196904,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.9.0","CFBundleVersion":"1.9.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"89373740-636A-5FE7-AA76-019520C275C5","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "CE18BCF0-4E77-54C5-C697-85C30388E860",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 4294967295,
"instructionByteStream" : {"beforePC":"fyMD1f17v6n9AwCRW+D\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A==","atPC":"AwEAVH8jA9X9e7+p\/QMAkVDg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g=="},
"wakeTime" : 5,
"sleepWakeUUID" : "A0CEDA88-5967-4439-9020-0B498C91EEBE",
"sip" : "enabled",
"vmRegionInfo" : "0x169 is not in any region. Bytes before following region: 4309810839\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100e28000-100e2c000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000169","rawCodes":[1,361],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000169"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":1726},
"ktriageinfo" : "VM - (arg = 0x3) mach_vm_allocate_kernel failed within call to vm_map_enter\n",
"vmregioninfo" : "0x169 is not in any region. Bytes before following region: 4309810839\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n __TEXT 100e28000-100e2c000 [ 16K] r-x\/r-x SM=COW \/Applications\/ChimeraX-1.9.app\/Contents\/MacOS\/ChimeraX",
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"faultingThread" : 0,
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===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
> open "/Users/lucapaluzzi/Desktop/STRUTTURE hTrxR/HsTrxR_Doorstop_Benzo_sites
> copia.cxs"
Log from Tue Jul 29 17:39:32 2025 Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/lucapaluzzi/Desktop/STRUTTURE hTrxR/hTrxR Doorstop
> Benzodiazepina.pyc"
Failed opening file /Users/lucapaluzzi/Desktop/STRUTTURE hTrxR/hTrxR Doorstop
Benzodiazepina.pyc:
Python code was compiled for a different version of Python
> open "/Users/lucapaluzzi/Desktop/hTrxR doorstop benzodiazepina.pdb" format
> pdb
Chain information for hTrxR doorstop benzodiazepina.pdb #1
---
Chain | Description
A | No description available
B | No description available
> select ::name="HOH"
18 atoms, 18 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="MPD"
24 atoms, 21 bonds, 3 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> select ::name="NAP"
96 atoms, 104 bonds, 2 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> sel:phe228
Unknown command: sel:phe228
> sel:Phe228
Unknown command: sel:Phe228
> sel: phe228
Unknown command: sel: phe228
> sel:phe228
Unknown command: sel:phe228
> sel:phe 228
Unknown command: sel:phe 228
> sel:phe 228
Unknown command: sel:phe 228
> sel:phe 228
Unknown command: sel:phe 228
> sel:phe 228
Unknown command: sel:phe 228
> sel:phe 228
Unknown command: sel:phe 228
> sel:phe 228
Unknown command: sel:phe 228
> sel: phe228
Unknown command: sel: phe228
> select :phe228
Nothing selected
> select :ser222
Nothing selected
> select :ser 222
Expected a keyword
> select ser222
Expected an objects specifier or a keyword
> select ser222
Expected an objects specifier or a keyword
> select :ser222
Nothing selected
> select Ser222
Expected an objects specifier or a keyword
> select :Ser222
Nothing selected
> sel: Ser222
Unknown command: sel: Ser222
> Select: Glu241
Unknown command: Select: Glu241
> Sel: Glu241
Unknown command: Sel: Glu241
> Sel :Glu241
Unknown command: Sel :Glu241
> select :241
18 atoms, 16 bonds, 2 residues, 1 model selected
> select :222
12 atoms, 10 bonds, 2 residues, 1 model selected
> select :222,223
28 atoms, 26 bonds, 4 residues, 1 model selected
> style sel sphere
Changed 28 atom styles
> select :222,223,224
44 atoms, 42 bonds, 6 residues, 1 model selected
> style sel sphere
Changed 44 atom styles
> style sel sphere
Changed 44 atom styles
> style sel stick
Changed 44 atom styles
> style sel stick
Changed 44 atom styles
> show sel atoms
> style sel sphere
Changed 44 atom styles
> hide sel atoms
Drag select of 453 atoms, 972 residues, 405 bonds
> show sel atoms
> select clear
> select /A:222@CB
1 atom, 1 residue, 1 model selected
> select up
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
67 atoms, 67 bonds, 8 residues, 1 model selected
> select down
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
67 atoms, 67 bonds, 8 residues, 1 model selected
> surface hidePatches sel
> style sel stick
Changed 67 atom styles
> select clear
> select /B:223@CD1
1 atom, 1 residue, 1 model selected
> select up
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
67 atoms, 67 bonds, 8 residues, 1 model selected
> style sel stick
Changed 67 atom styles
> select clear
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> select /A
3809 atoms, 3889 bonds, 488 residues, 1 model selected
> ui tool show "Color Actions"
> color sel cornflower blue
> color sel light gray
> color sel gray
> color sel dark gray
> ui tool show "Color Actions"
> color sel turquoise
> color sel medium turquoise
> color sel light sea green
> color sel cornflower blue
> select /A
3809 atoms, 3889 bonds, 488 residues, 1 model selected
> select /B
3813 atoms, 3893 bonds, 488 residues, 1 model selected
> color sel light slate gray
> color sel slate gray
> color sel medium aquamarine
> color sel dark cyan
> color sel blue
> color sel cyan
> color sel deep sky blue
> select clear
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> ui tool show "Color Actions"
> color sel red
> color sel tomato
> color sel brown
> color sel gold
> color sel orange
> color sel dark orange
> color sel orange
> color sel green yellow
> color sel light salmon
> color sel chartreuse
> color sel spring green
> color sel lime green
> color sel sea green
> color sel dark orange
> color sel green yellow
> color sel dark orange
> select /A
3809 atoms, 3889 bonds, 488 residues, 1 model selected
> select /B
3813 atoms, 3893 bonds, 488 residues, 1 model selected
> ui tool show "Color Actions"
> color sel light slate gray
> color sel slate gray
> color sel light gray
> color sel dark gray
> color sel light gray
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> ui tool show "Color Actions"
> color sel sandy brown
> color sel dark orange
> ui tool show "Color Actions"
> color sel yellow
> color sel indian red
> color sel yellow
> color sel gold
> select :167,165,164,45,296
86 atoms, 82 bonds, 10 residues, 1 model selected
> ui tool show "Color Actions"
> color sel tomato
> color sel gold
> color sel green yellow
> color sel sandy brown
> color sel orange
> color sel fire brick
> ui tool show "Color Actions"
> color sel lime
> select /B:382
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:382
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /B:374
7 atoms, 6 bonds, 1 residue, 1 model selected
> select /B:382
5 atoms, 4 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 5 atom styles
> style sel sphere
Changed 5 atom styles
> style sel stick
Changed 5 atom styles
> select B:228,382,372,200
Expected an objects specifier or a keyword
> select :B228,382,372,200
48 atoms, 44 bonds, 6 residues, 1 model selected
> select :B 228,382,372,200
Expected a keyword
> select /B:228@CE2
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 11 bonds, 1 residue, 1 model selected
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
7 atoms, 6 bonds, 1 residue, 1 model selected
> surface sel
> surface hidePatches (#!1 & sel)
> select :B 228,382,372,200
Expected a keyword
> select /B:228@CD2
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 11 bonds, 1 residue, 2 models selected
> surface (#!1 & sel)
> select /B:372
7 atoms, 6 bonds, 1 residue, 1 model selected
> surface (#!1 & sel)
> select :B 228,382,372,200
Expected a keyword
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> surface (#!1 & sel)
> color (#!1 & sel) yellow
> select :167,165,164,45,296
86 atoms, 82 bonds, 10 residues, 1 model selected
> surface (#!1 & sel)
> surface hidePatches (#!1 & sel)
> select clear
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel white
> select clear
> save /Users/lucapaluzzi/Desktop/HsTrxR_Doorstop_Benzo_sites.cxs
——— End of log from Tue Jul 29 17:39:32 2025 ———
opened ChimeraX session
> select /A:200@CE1
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select /A:228@CE2
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 11 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select /A:382@CB
1 atom, 1 residue, 1 model selected
> color (#!1 & sel) byhetero
> select /A:372@CG2
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 6 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select clear
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel byhetero
> ui tool show "Color Actions"
> color sel white
> select clear
> lighting simple
> lighting soft
> lighting full
> lighting soft
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 2 models selected
> color (#!1 & sel) lime
> color (#!1 & sel) yellow
> ui tool show "Color Actions"
> color (#!1 & sel) #f5fff5ff
> color (#!1 & sel) #f5fff4ff
> color (#!1 & sel) #f8fff5ff
> color (#!1 & sel) #f9fff5ff
> color (#!1 & sel) #fbfff5ff
> color (#!1 & sel) #fbfff4ff
> color (#!1 & sel) #fcfff3ff
> color (#!1 & sel) #feffeaff
> color (#!1 & sel) #fdffebff
> color (#!1 & sel) #fdffecff
> color (#!1 & sel) #fffef9ff
> color (#!1 & sel) #fdf3ffff
> color (#!1 & sel) #fef2ffff
> color (#!1 & sel) #fef1ffff
> color (#!1 & sel) #fdf1ffff
> color (#!1 & sel) #fef0ffff
> color (#!1 & sel) #fdefffff
> color (#!1 & sel) #feefffff
> color (#!1 & sel) #fdeeffff
> color (#!1 & sel) #feebffff
> color (#!1 & sel) #fddeffff
> color (#!1 & sel) #fddcffff
> color (#!1 & sel) #fddaffff
> color (#!1 & sel) #fdd9ffff
> color (#!1 & sel) #fcd7ffff
> color (#!1 & sel) #fcd6ffff
> color (#!1 & sel) #fcd5ffff
> color (#!1 & sel) #fcd4ffff
> color (#!1 & sel) #fcd3ffff
> color (#!1 & sel) #fbd3ffff
> color (#!1 & sel) #fad1ffff
> color (#!1 & sel) #fad0ffff
> color (#!1 & sel) #f9cfffff
> color (#!1 & sel) #f6d0ffff
> color (#!1 & sel) #f6d1ffff
> color (#!1 & sel) #f7d2ffff
> color (#!1 & sel) #f8d3ffff
> color (#!1 & sel) #fad9ffff
> color (#!1 & sel) #fadbffff
> color (#!1 & sel) #fcdeffff
> color (#!1 & sel) #fde0ffff
> color (#!1 & sel) #fee4ffff
> color (#!1 & sel) #ffe6ffff
> color (#!1 & sel) #ffe9feff
> color (#!1 & sel) #ffeafdff
> color (#!1 & sel) #fff5f1ff
> color (#!1 & sel) #fff6f0ff
> color (#!1 & sel) #fff6efff
> color (#!1 & sel) #fff6eeff
> color (#!1 & sel) #fff7ecff
> color (#!1 & sel) #fff8e7ff
> color (#!1 & sel) #fff9e5ff
> color (#!1 & sel) #fff9e3ff
> color (#!1 & sel) #fffadfff
> color (#!1 & sel) #fffbdbff
> color (#!1 & sel) #fffcd5ff
> color (#!1 & sel) #fffdd4ff
> color (#!1 & sel) #fffdd0ff
> color (#!1 & sel) #ffffcdff
> color (#!1 & sel) #ffffcbff
> color (#!1 & sel) #feffc3ff
> color (#!1 & sel) #feffbfff
> color (#!1 & sel) #fdffbcff
> color (#!1 & sel) #fdffbaff
> color (#!1 & sel) #fdffb7ff
> color (#!1 & sel) #fcffb4ff
> color (#!1 & sel) #fcffb2ff
> color (#!1 & sel) #fbffafff
> color (#!1 & sel) #fcffaeff
> color (#!1 & sel) #fcffabff
> color (#!1 & sel) #fcffaaff
> color (#!1 & sel) #fcffa9ff
> color (#!1 & sel) #fdffa8ff
> color (#!1 & sel) #fcffa6ff
> color (#!1 & sel) #fdffa5ff
> color (#!1 & sel) #feffa5ff
> color (#!1 & sel) #feffa3ff
> color (#!1 & sel) #ffffa3ff
> color (#!1 & sel) #ffffa1ff
> color (#!1 & sel) #fffea0ff
> color (#!1 & sel) #fffe9fff
> color (#!1 & sel) #fffd9eff
> color (#!1 & sel) #fffd9dff
> color (#!1 & sel) #fffd9cff
> color (#!1 & sel) #fffc9aff
> color (#!1 & sel) #fffb98ff
> color (#!1 & sel) #fffa98ff
> color (#!1 & sel) #fffa97ff
> color (#!1 & sel) #fff996ff
> color (#!1 & sel) #fff995ff
> color (#!1 & sel) #fff994ff
> color (#!1 & sel) #fff893ff
> color (#!1 & sel) #fff891ff
> color (#!1 & sel) #fff790ff
> color (#!1 & sel) #fff78eff
> color (#!1 & sel) #fff68cff
> color (#!1 & sel) #fff58bff
> color (#!1 & sel) #fff589ff
> color (#!1 & sel) #fff587ff
> color (#!1 & sel) #fff486ff
> color (#!1 & sel) #fff484ff
> color (#!1 & sel) #fff382ff
> color (#!1 & sel) #fff380ff
> color (#!1 & sel) #fff27eff
> color (#!1 & sel) #fff27dff
> color (#!1 & sel) #fff17bff
> color (#!1 & sel) #fff179ff
> color (#!1 & sel) #fff176ff
> color (#!1 & sel) #fff174ff
> color (#!1 & sel) #fff070ff
> color (#!1 & sel) #ffef6aff
> color (#!1 & sel) #ffed62ff
> color (#!1 & sel) #ffec5dff
> color (#!1 & sel) #ffeb59ff
> color (#!1 & sel) #ffeb55ff
> color (#!1 & sel) #ffea54ff
> color (#!1 & sel) #ffeb51ff
> color (#!1 & sel) #ffec50ff
> color (#!1 & sel) #ffec4fff
> color (#!1 & sel) #ffec50ff
> color (#!1 & sel) #ffec52ff
> color (#!1 & sel) #ffea55ff
> color (#!1 & sel) #ffe852ff
> color (#!1 & sel) #ffe84eff
> color (#!1 & sel) #ffe947ff
> color (#!1 & sel) #fff036ff
> color (#!1 & sel) #fff233ff
> color (#!1 & sel) #fff331ff
> color (#!1 & sel) #fff430ff
> color (#!1 & sel) #fdff1eff
> color (#!1 & sel) #faff19ff
> color (#!1 & sel) #f9ff17ff
> color (#!1 & sel) #f7ff14ff
> color (#!1 & sel) #f5ff11ff
> color (#!1 & sel) #f5ff0fff
> color (#!1 & sel) #f3ff0dff
> color (#!1 & sel) #f2ff0aff
> color (#!1 & sel) #f1ff08ff
> color (#!1 & sel) #f0ff07ff
> color (#!1 & sel) #efff06ff
> color (#!1 & sel) #e8ff04ff
> color (#!1 & sel) #e7ff05ff
> color (#!1 & sel) #e5ff05ff
> color (#!1 & sel) #e4ff06ff
> color (#!1 & sel) #e1ff06ff
> color (#!1 & sel) #e0ff06ff
> color (#!1 & sel) #c3ff00ff
> color (#!1 & sel) #c6ff00ff
> color (#!1 & sel) #c8ff00ff
> color (#!1 & sel) #c9ff02ff
> color (#!1 & sel) #caff02ff
> color (#!1 & sel) #ccff04ff
> color (#!1 & sel) #ccff05ff
> color (#!1 & sel) #ceff08ff
> color (#!1 & sel) #cfff09ff
> color (#!1 & sel) #d2ff0aff
> color (#!1 & sel) #d4ff0aff
> color (#!1 & sel) #d6ff09ff
> color (#!1 & sel) #d9ff08ff
> color (#!1 & sel) #dbff07ff
> color (#!1 & sel) #ddff07ff
> color (#!1 & sel) #dfff06ff
> color (#!1 & sel) #e1ff05ff
> color (#!1 & sel) #edff04ff
> color (#!1 & sel) #eeff04ff
> color (#!1 & sel) #efff05ff
> color (#!1 & sel) #f0ff05ff
> color (#!1 & sel) #f1ff06ff
> color (#!1 & sel) #f1ff05ff
> color (#!1 & sel) #fffc0aff
> color (#!1 & sel) #fffb0aff
> color (#!1 & sel) #fffa0aff
> color (#!1 & sel) #fff707ff
> color (#!1 & sel) #fff50aff
> color (#!1 & sel) #fff60bff
> color (#!1 & sel) #fff60dff
> color (#!1 & sel) #fff50eff
> color (#!1 & sel) #fff016ff
> color (#!1 & sel) #ffef18ff
> color (#!1 & sel) #ffee19ff
> color (#!1 & sel) #ffed1aff
> color (#!1 & sel) #ffec23ff
> color (#!1 & sel) #ffec24ff
> color (#!1 & sel) #fff22fff
> color (#!1 & sel) #fff331ff
> color (#!1 & sel) #fff533ff
> color (#!1 & sel) #fff635ff
> color (#!1 & sel) #fff835ff
> color (#!1 & sel) #fff937ff
> color (#!1 & sel) #fff938ff
> color (#!1 & sel) #fff939ff
> color (#!1 & sel) #fffa39ff
> color (#!1 & sel) #fff93aff
> color (#!1 & sel) #fff839ff
> color (#!1 & sel) #fff83aff
> color (#!1 & sel) #fff73aff
> color (#!1 & sel) #fff73bff
> color (#!1 & sel) #ffe13dff
> color (#!1 & sel) #ffdd3eff
> color (#!1 & sel) #ffdb3fff
> color (#!1 & sel) #ffd540ff
> color (#!1 & sel) #ffd53fff
> color (#!1 & sel) #ffd23eff
> color (#!1 & sel) #ffcd3aff
> color (#!1 & sel) #ffce38ff
> color (#!1 & sel) #ffd632ff
> color (#!1 & sel) #ffd930ff
> color (#!1 & sel) #ffdb2eff
> color (#!1 & sel) #ffdd2cff
> color (#!1 & sel) #ffde2cff
> color (#!1 & sel) #ffdf2bff
> color (#!1 & sel) #ffe228ff
> color (#!1 & sel) #fff51fff
> color (#!1 & sel) #fff61eff
> color (#!1 & sel) #fff81dff
> color (#!1 & sel) #fbff16ff
> color (#!1 & sel) #f9ff15ff
> color (#!1 & sel) #f7ff15ff
> color (#!1 & sel) #f7ff14ff
> color (#!1 & sel) #f5ff14ff
> color (#!1 & sel) #f5ff13ff
> color (#!1 & sel) #f4ff13ff
> color (#!1 & sel) #f2ff13ff
> color (#!1 & sel) #f1ff13ff
> color (#!1 & sel) #f0ff14ff
> color (#!1 & sel) #f0ff16ff
> color (#!1 & sel) #f1ff17ff
> color (#!1 & sel) #f2ff19ff
> color (#!1 & sel) #f2ff1aff
> color (#!1 & sel) #f3ff1bff
> color (#!1 & sel) #f3ff1cff
> color (#!1 & sel) #f5ff1eff
> color (#!1 & sel) #f0ff2fff
> color (#!1 & sel) #efff30ff
> color (#!1 & sel) #eeff32ff
> color (#!1 & sel) #edff36ff
> color (#!1 & sel) #edff37ff
> color (#!1 & sel) #eeff3bff
> color (#!1 & sel) #efff3cff
> color (#!1 & sel) #f0ff3bff
> color (#!1 & sel) #f1ff3cff
> color (#!1 & sel) #f4ff3bff
> color (#!1 & sel) #f5ff3bff
> color (#!1 & sel) #faff3bff
> color (#!1 & sel) #fcff3bff
> color (#!1 & sel) #fffb3cff
> color (#!1 & sel) #fff83dff
> color (#!1 & sel) #fff73dff
> color (#!1 & sel) #fff63dff
> color (#!1 & sel) #fff53dff
> color (#!1 & sel) #fff43dff
> color (#!1 & sel) #fff33eff
> color (#!1 & sel) #ffeb41ff
> color (#!1 & sel) #ffea41ff
> color (#!1 & sel) #ffe842ff
> color (#!1 & sel) #ffe841ff
> color (#!1 & sel) #ffec3cff
> color (#!1 & sel) #ffec3bff
> color (#!1 & sel) #ffee39ff
> color (#!1 & sel) #ffef38ff
> color (#!1 & sel) #fff729ff
> color (#!1 & sel) #fff827ff
> color (#!1 & sel) #fffc1eff
> color (#!1 & sel) #fffc1dff
> color (#!1 & sel) #fffc1cff
> color (#!1 & sel) #fffd1cff
> color (#!1 & sel) #fffe1cff
> color (#!1 & sel) #ffff1dff
> color (#!1 & sel) #feff21ff
> color (#!1 & sel) #feff23ff
> color (#!1 & sel) #fdff26ff
> color (#!1 & sel) #f7ff4cff
> color (#!1 & sel) #f4ff50ff
> color (#!1 & sel) #f2ff52ff
> color (#!1 & sel) #edff58ff
> color (#!1 & sel) #ecff5aff
> color (#!1 & sel) #ecff5bff
> color (#!1 & sel) #ebff5cff
> color (#!1 & sel) #e3ff73ff
> color (#!1 & sel) #e3ff74ff
> color (#!1 & sel) #e2ff73ff
> color (#!1 & sel) #e1ff72ff
> color (#!1 & sel) #e0ff71ff
> color (#!1 & sel) #e0ff70ff
> color (#!1 & sel) #dfff71ff
> color (#!1 & sel) #d9ff6dff
> color (#!1 & sel) #d8ff6cff
> color (#!1 & sel) #d7ff6bff
> color (#!1 & sel) #d4ff68ff
> color (#!1 & sel) #d3ff68ff
> color (#!1 & sel) #c5ff5cff
> color (#!1 & sel) #bcff57ff
> color (#!1 & sel) #bbff57ff
> color (#!1 & sel) #baff57ff
> color (#!1 & sel) #b8ff57ff
> color (#!1 & sel) #d4ff78ff
> color (#!1 & sel) #d9ff7bff
> color (#!1 & sel) #e3ff80ff
> color (#!1 & sel) #f2ff85ff
> color (#!1 & sel) #fcff87ff
> color (#!1 & sel) #fff187ff
> color (#!1 & sel) #ffd783ff
> color (#!1 & sel) #ffd683ff
> color (#!1 & sel) #ffd682ff
> color (#!1 & sel) #ffd582ff
> color (#!1 & sel) #ffd381ff
> color (#!1 & sel) #ffd57fff
> color (#!1 & sel) #ffda80ff
> color (#!1 & sel) #ffdd80ff
> color (#!1 & sel) #ffe07fff
> color (#!1 & sel) #ffe280ff
> color (#!1 & sel) #ffec7eff
> color (#!1 & sel) #ffee7fff
> color (#!1 & sel) #ffef7fff
> color (#!1 & sel) #fff581ff
> color (#!1 & sel) #fff984ff
> color (#!1 & sel) #fffb85ff
> color (#!1 & sel) #fffd86ff
> color (#!1 & sel) #feff89ff
> color (#!1 & sel) #fdff89ff
> color (#!1 & sel) #fcff8aff
> color (#!1 & sel) #f2ff8eff
> color (#!1 & sel) #f1ff8fff
> color (#!1 & sel) #f0ff8fff
> color (#!1 & sel) #efff8fff
> color (#!1 & sel) #eeff8fff
> color (#!1 & sel) #efff8fff
> color (#!1 & sel) #f0ff90ff
> color (#!1 & sel) #f1ff90ff
> color (#!1 & sel) #f2ff92ff
> color (#!1 & sel) #f3ff92ff
> color (#!1 & sel) #f5ff96ff
> color (#!1 & sel) #f6ff98ff
> color (#!1 & sel) #f8ff9dff
> color (#!1 & sel) #f7ffa0ff
> color (#!1 & sel) #f8ffa3ff
> color (#!1 & sel) #f7ffa6ff
> color (#!1 & sel) #f7ffa9ff
> color (#!1 & sel) #f7ffabff
> color (#!1 & sel) #f7ffb8ff
> color (#!1 & sel) #f7ffb9ff
> color (#!1 & sel) #f7ffc0ff
> color (#!1 & sel) #f8ffc0ff
> color (#!1 & sel) #f8ffc1ff
> color (#!1 & sel) #f7ffc4ff
> color (#!1 & sel) #f7ffc7ff
> color (#!1 & sel) #f7ffc9ff
> color (#!1 & sel) #f7ffcbff
> color (#!1 & sel) #f6ffcbff
> color (#!1 & sel) #f6ffccff
> color (#!1 & sel) #f6ffcdff
> color (#!1 & sel) #f6ffccff
> color (#!1 & sel) #f4ffc9ff
> color (#!1 & sel) #f2ffc4ff
> color (#!1 & sel) #efffc0ff
> color (#!1 & sel) #f8ff4cff
> color (#!1 & sel) #fbff42ff
> color (#!1 & sel) #fdff3aff
> color (#!1 & sel) #fffb1eff
> color (#!1 & sel) #fff728ff
> color (#!1 & sel) #fff829ff
> color (#!1 & sel) #fff62bff
> color (#!1 & sel) #fff62cff
> color (#!1 & sel) #fff72cff
> color (#!1 & sel) #fff62dff
> color (#!1 & sel) #fff62eff
> color (#!1 & sel) #fff52eff
> color (#!1 & sel) #fff52fff
> color (#!1 & sel) #fff531ff
> color (#!1 & sel) #fff431ff
> color (#!1 & sel) #fff334ff
> color (#!1 & sel) #fff235ff
> color (#!1 & sel) #fff236ff
> color (#!1 & sel) #fff137ff
> color (#!1 & sel) #fff138ff
> color (#!1 & sel) #fff03aff
> color (#!1 & sel) #ffef3aff
> color (#!1 & sel) #ffef3bff
> color (#!1 & sel) #fff03bff
> color (#!1 & sel) #fff13cff
> color (#!1 & sel) #fff23cff
> color (#!1 & sel) #fff83dff
> color (#!1 & sel) #fff93dff
> color (#!1 & sel) #fffa3dff
> color (#!1 & sel) #fffa3cff
> color (#!1 & sel) #faff39ff
> color (#!1 & sel) #f8ff39ff
> color (#!1 & sel) #ebff4eff
> color (#!1 & sel) #ebff50ff
> color (#!1 & sel) #e9ff52ff
> color (#!1 & sel) #e7ff54ff
> color (#!1 & sel) #e5ff58ff
> color (#!1 & sel) #e3ff5bff
> color (#!1 & sel) #deff60ff
> color (#!1 & sel) #ddff60ff
> color (#!1 & sel) #daff5fff
> color (#!1 & sel) #dbff5fff
> color (#!1 & sel) #dcff5eff
> color (#!1 & sel) #ddff5eff
> color (#!1 & sel) #deff5eff
> color (#!1 & sel) #dfff5eff
> color (#!1 & sel) #e0ff5eff
> color (#!1 & sel) #e8ff65ff
> color (#!1 & sel) #e9ff66ff
> color (#!1 & sel) #e9ff65ff
> color (#!1 & sel) #eaff66ff
> color (#!1 & sel) #ebff67ff
> color (#!1 & sel) #ecff67ff
> color (#!1 & sel) #ecff68ff
> color (#!1 & sel) #edff68ff
> color (#!1 & sel) #eeff68ff
> color (#!1 & sel) #f0ff6aff
> color (#!1 & sel) #f2ff6aff
> color (#!1 & sel) #f2ff6bff
> color (#!1 & sel) #ffff6eff
> color (#!1 & sel) #fffe6dff
> color (#!1 & sel) #fffe6cff
> color (#!1 & sel) #fffe6aff
> color (#!1 & sel) #ffff68ff
> color (#!1 & sel) #feff66ff
> color (#!1 & sel) #feff65ff
> color (#!1 & sel) #fdff63ff
> color (#!1 & sel) #fcff61ff
> color (#!1 & sel) #fdff55ff
> color (#!1 & sel) #fdff53ff
> color (#!1 & sel) #fdff52ff
> color (#!1 & sel) #fdff51ff
> color (#!1 & sel) #feff51ff
> color (#!1 & sel) #fdff50ff
> color (#!1 & sel) #feff4fff
> color (#!1 & sel) #feff4eff
> color (#!1 & sel) #ffff4dff
> color (#!1 & sel) #ffff4cff
> color (#!1 & sel) #fffe4aff
> color (#!1 & sel) #fffd49ff
> color (#!1 & sel) #fffd48ff
> color (#!1 & sel) #fffa49ff
> color (#!1 & sel) #fffa4aff
> color (#!1 & sel) #fff453ff
> color (#!1 & sel) #fff454ff
> color (#!1 & sel) #fff356ff
> color (#!1 & sel) #fff357ff
> color (#!1 & sel) #fff35eff
> color (#!1 & sel) #fffbeeff
> color (#!1 & sel) #fffafaff
> color (#!1 & sel) #fdfaffff
> color (#!1 & sel) #f9f7ffff
> color (#!1 & sel) #f6f8ffff
> color (#!1 & sel) #f7faffff
> color (#!1 & sel) #f8fdffff
> color (#!1 & sel) #f8ffffff
> color (#!1 & sel) #f8fffeff
> color (#!1 & sel) #f8fffdff
> color (#!1 & sel) #f7fffcff
> color (#!1 & sel) #f6fffaff
> color (#!1 & sel) #f6fff9ff
> color (#!1 & sel) #f5fff9ff
> color (#!1 & sel) #f6fff9ff
> color (#!1 & sel) #f6fff8ff
> color (#!1 & sel) #f7fff6ff
> color (#!1 & sel) #f7fff7ff
> color (#!1 & sel) #f8fff6ff
> color (#!1 & sel) #f9fff6ff
> color (#!1 & sel) #f8fff2ff
> color (#!1 & sel) #f8fff1ff
> color (#!1 & sel) #f6ffefff
> color (#!1 & sel) #f6ffedff
> color (#!1 & sel) #f5ffe6ff
> color (#!1 & sel) #f6ffe4ff
> color (#!1 & sel) #f6ffe0ff
> color (#!1 & sel) #faffbeff
> color (#!1 & sel) #fbffbcff
> color (#!1 & sel) #fdffa2ff
> color (#!1 & sel) #feff9eff
> color (#!1 & sel) #feff96ff
> color (#!1 & sel) #ffff93ff
> color (#!1 & sel) #feff91ff
> color (#!1 & sel) #feff8eff
> color (#!1 & sel) #feff8dff
> color (#!1 & sel) #feff8cff
> color (#!1 & sel) #feff8bff
> color (#!1 & sel) #feff8aff
> color (#!1 & sel) #feff89ff
> color (#!1 & sel) #feff87ff
> color (#!1 & sel) #fdff84ff
> color (#!1 & sel) #fcff80ff
> color (#!1 & sel) #fcff7fff
> color (#!1 & sel) #fbff76ff
> color (#!1 & sel) #fbff73ff
> color (#!1 & sel) #fbff71ff
> color (#!1 & sel) #faff71ff
> color (#!1 & sel) #fffd5aff
> color (#!1 & sel) #fffd57ff
> color (#!1 & sel) #fffc53ff
> color (#!1 & sel) #fffb50ff
> color (#!1 & sel) #fffa4aff
> color (#!1 & sel) #fffa4bff
> color (#!1 & sel) #fff94bff
> color (#!1 & sel) #deff68ff
> color (#!1 & sel) #daff69ff
> color (#!1 & sel) #d2ff65ff
> color (#!1 & sel) #d2ff64ff
> color (#!1 & sel) #d2ff65ff
> color (#!1 & sel) #d3ff67ff
> color (#!1 & sel) #d4ff68ff
> color (#!1 & sel) #d5ff6aff
> color (#!1 & sel) #d5ff6bff
> color (#!1 & sel) #d6ff6cff
> color (#!1 & sel) #dbff72ff
> color (#!1 & sel) #e2ff76ff
> color (#!1 & sel) #e4ff78ff
> color (#!1 & sel) #eaff78ff
> color (#!1 & sel) #eeff79ff
> color (#!1 & sel) #f4ff7cff
> color (#!1 & sel) #f9ff7cff
> color (#!1 & sel) #fcff7dff
> color (#!1 & sel) #fffa7dff
> color (#!1 & sel) #fff87dff
> color (#!1 & sel) #fff67cff
> color (#!1 & sel) #fff57cff
> color (#!1 & sel) #fff47cff
> color (#!1 & sel) #fff378ff
> color (#!1 & sel) #fff477ff
> color (#!1 & sel) #fff573ff
> color (#!1 & sel) #fff572ff
> color (#!1 & sel) #fff571ff
> color (#!1 & sel) #fff671ff
> color (#!1 & sel) #fff670ff
> color (#!1 & sel) #fff76fff
> color (#!1 & sel) #fff76eff
> color (#!1 & sel) #fff76fff
> color (#!1 & sel) #fff873ff
> color (#!1 & sel) #fff974ff
> color (#!1 & sel) #fffa78ff
> color (#!1 & sel) #fffa7aff
> color (#!1 & sel) #fffb7cff
> color (#!1 & sel) #fffb7eff
> color (#!1 & sel) #fffc7fff
> color (#!1 & sel) #fffc80ff
> color (#!1 & sel) #fffc86ff
> color (#!1 & sel) #fffc8cff
> color (#!1 & sel) #fffc8dff
> color (#!1 & sel) #fffc8eff
> color (#!1 & sel) #fffc8fff
> color (#!1 & sel) #fffc91ff
> color (#!1 & sel) #fffc92ff
> color (#!1 & sel) #fffd93ff
> color (#!1 & sel) #fffc94ff
> color (#!1 & sel) #fffd94ff
> color (#!1 & sel) #fffc95ff
> color (#!1 & sel) #fffd97ff
> color (#!1 & sel) #fffd99ff
> color (#!1 & sel) #fffe9aff
> color (#!1 & sel) #ffff9dff
> color (#!1 & sel) #ffff9eff
> color (#!1 & sel) #feffa2ff
> color (#!1 & sel) #fcffa6ff
> color (#!1 & sel) #faffabff
> color (#!1 & sel) #f9ffb1ff
> color (#!1 & sel) #f7ffb7ff
> color (#!1 & sel) #edffc8ff
> color (#!1 & sel) #edffc9ff
> color (#!1 & sel) #ecffc9ff
> color (#!1 & sel) #ebffc9ff
> color (#!1 & sel) #e3ffcfff
> color (#!1 & sel) #e1ffcfff
> color (#!1 & sel) #dfffd0ff
> color (#!1 & sel) #deffd0ff
> color (#!1 & sel) #ddffd0ff
> color (#!1 & sel) #dcffd0ff
> color (#!1 & sel) #dbffd0ff
> color (#!1 & sel) #daffd0ff
> color (#!1 & sel) #d9ffd0ff
> color (#!1 & sel) #ceffc9ff
> color (#!1 & sel) #cdffc8ff
> color (#!1 & sel) #ccffc8ff
> color (#!1 & sel) #cbffc7ff
> color (#!1 & sel) #caffc6ff
> color (#!1 & sel) #c6ffbcff
> color (#!1 & sel) #cdffc3ff
> color (#!1 & sel) #d0ffc7ff
> color (#!1 & sel) #d6ffd1ff
> color (#!1 & sel) #d7ffd2ff
> color (#!1 & sel) #d8ffd3ff
> color (#!1 & sel) #d9ffd6ff
> color (#!1 & sel) #daffd7ff
> color (#!1 & sel) #dbffdbff
> color (#!1 & sel) #dcffddff
> color (#!1 & sel) #ddffddff
> color (#!1 & sel) #deffdeff
> color (#!1 & sel) #e0ffdfff
> color (#!1 & sel) #ecffe4ff
> color (#!1 & sel) #edffe5ff
> color (#!1 & sel) #d5ffb6ff
> color (#!1 & sel) #d2ffadff
> color (#!1 & sel) #ceff9bff
> color (#!1 & sel) #cbff4bff
> color (#!1 & sel) #ccff4eff
> color (#!1 & sel) yellow
> color (#!1 & sel) #ccff4eff
> color (#!1 & sel) #c8f94cff
> color (#!1 & sel) #bbe947ff
> color (#!1 & sel) #95ba39ff
> color (#!1 & sel) #8eb136ff
> color (#!1 & sel) #698328ff
> color (#!1 & sel) #688227ff
> color (#!1 & sel) #678127ff
> color (#!1 & sel) #688228ff
> color (#!1 & sel) #6d882aff
> color (#!1 & sel) #ccff4eff
> color (#!1 & sel) #ccff4efb
> color (#!1 & sel) #ccff4ef0
> color (#!1 & sel) #ccff4eef
> color (#!1 & sel) #ccff4ee2
> color (#!1 & sel) #ccff4ede
> color (#!1 & sel) #ccff4ecc
> color (#!1 & sel) #ccff4eca
> color (#!1 & sel) #ccff4ec8
> color (#!1 & sel) #ccff4ec7
> color (#!1 & sel) #ccff4eb6
> color (#!1 & sel) #ccff4ea1
> color (#!1 & sel) #ccff4e9f
> color (#!1 & sel) #ccff4e9d
> color (#!1 & sel) #ccff4e9a
> color (#!1 & sel) #ccff4e99
> color (#!1 & sel) #ccff4e92
> color (#!1 & sel) #ccff4e80
> color (#!1 & sel) #ccff4e6b
> color (#!1 & sel) #ccff4e6a
> color (#!1 & sel) #ccff4e69
> color (#!1 & sel) #ccff4e63
> color (#!1 & sel) #ccff4e54
> color (#!1 & sel) #ccff4e27
> color (#!1 & sel) #ccff4e1e
> color (#!1 & sel) #ccff4e1d
> color (#!1 & sel) #ccff4e1b
> color (#!1 & sel) #ccff4e1c
> color (#!1 & sel) #ccff4e1d
> color (#!1 & sel) #ccff4e1b
> color (#!1 & sel) #ccff4e1f
> color (#!1 & sel) #ccff4e24
> color (#!1 & sel) #ccff4e28
> color (#!1 & sel) #ccff4e2f
> color (#!1 & sel) #ccff4eb4
> color (#!1 & sel) #ccff4ef0
> color (#!1 & sel) #ccff4ef2
> color (#!1 & sel) #ccff4ef3
> color (#!1 & sel) #ccff4ef4
> color (#!1 & sel) #ccff4ef7
> color (#!1 & sel) #ccff4eff
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 2 models selected
> color (#!1 & sel) yellow
> color (#!1 & sel) byhetero
> select clear
> select /A:45@OG1
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 6 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select /A:164@NH2
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select /A:167@CZ
1 atom, 1 residue, 1 model selected
> select up
12 atoms, 12 bonds, 1 residue, 2 models selected
> color (#!1 & sel) byhetero
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> color (#!1 & sel) byhetero
> lighting simple
> lighting soft
> lighting full
> lighting soft
> lighting simple
> lighting soft
> select clear
> select ::name="FAD"
106 atoms, 116 bonds, 2 residues, 1 model selected
> color sel white
> color sel byhetero
> select clear
> save "/Users/lucapaluzzi/Desktop/SALVATAGGIO .cxs"
> lighting flat
> lighting soft
> lighting full
> lighting soft
> lighting shadows true intensity 0.5
> graphics silhouettes false
> lighting simple
> lighting flat
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> view
> ui tool show "Side View"
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting flat
> lighting simple
> lighting soft
> lighting full
> lighting flat
> graphics silhouettes false
> lighting shadows true intensity 0.5
> lighting flat
> lighting full
> lighting shadows false
> lighting flat
> lighting full
> lighting soft
> graphics silhouettes false
> lighting simple
> lighting soft
> graphics silhouettes true
> select :228,382,372,200
70 atoms, 66 bonds, 8 residues, 1 model selected
> volume style mesh
No volumes specified
> volume style mesh
No volumes specified
> transparency sel 50
> volume style surface
No volumes specified
> volume hide
No volumes specified
> volume style mesh
No volumes specified
> ui tool show "Volume Viewer"
> volume style mesh
No volumes specified
> volume style mesh
No volumes specified
Drag select of 153 atoms, 67 residues, 125 bonds
> select clear
Volume zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.
> volume style surface
No volumes specified
> volume style surface
No volumes specified
> volume style mesh
No volumes specified
> volume style surface
No volumes specified
> volume style surface
No volumes specified
> volume style surface
No volumes specified
> volume style surface
No volumes specified
> volume style image
No volumes specified
> volume region all imageMode "full region"
No volumes specified
> ui tool show "Selection Inspector"
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.9 (2024-12-11)
© 2016-2024 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M3
OpenGL vendor: Apple
Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac15,12
Model Number: MRXN3T/A
Chip: Apple M3
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 10151.121.1
OS Loader Version: 10151.121.1
Software:
System Software Overview:
System Version: macOS 14.5 (23F79)
Kernel Version: Darwin 23.5.0
Time since boot: 12 ore e 56 minuti
Graphics/Displays:
Apple M3:
Chipset Model: Apple M3
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 1.0.0
anyio: 4.7.0
appdirs: 1.4.4
appnope: 0.1.4
asttokens: 3.0.0
auditwheel: 6.1.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2023.11.17
cftime: 1.6.4.post1
charset-normalizer: 3.4.0
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.58.8
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.6
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.9
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.6
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.2.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.6
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.2
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.6
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.14
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.18.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.41
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
contourpy: 1.3.1
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.9
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.4
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.7
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 2.1.3
numpy: 1.26.4
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pexpect: 4.9.0
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
plotly: 5.24.1
prompt_toolkit: 3.0.48
psutil: 6.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pyKVFinder: 0.7.1
pynmrstar: 3.3.4
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.0
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.7.1
PyQt6-Qt6: 6.7.3
PyQt6-WebEngine-commercial: 6.7.0
PyQt6-WebEngine-Qt6: 6.7.3
PyQt6-WebEngineSubwheel-Qt6: 6.7.3
PyQt6_sip: 13.8.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.0
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tenacity: 9.0.0
tifffile: 2024.7.24
tinyarray: 1.2.4
toml: 0.10.2
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.2.3
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
Change History (2)
comment:1 by , 3 months ago
| Component: | Unassigned → Window Toolkit |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash on Mac waking from sleep |
comment:2 by , 3 months ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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