![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 3 months ago
Closed 3 months ago
#18318 closed defect (can't reproduce)
Crash using open/save dialog
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description (last modified by )
The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10.dev202503131841 (2025-03-13 18:41:17 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.pyWindows fatal exception: code 0x8001010e
", line Windows fatal exception: code 0x8001010e
114 in Windows fatal exception: code 0x8001010e
worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975Windows fatal exception: in code 0xrun
File "8001010eC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line
1038 in _bootstrap_inner
Windows fatal exception: code 0x8001010e
File "Windows fatal exception: code 0x8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975Windows fatal exception: code 0x8001010e
in run
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_innerWindows fatal exception: code 0x8001010e
File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py8001010e
", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
Windows fatal exception: File code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: code 0x8001010e
, line 114 in Windows fatal exception: code 0x8001010e
worker
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
, line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: , line 1038 in _bootstrap_innercode 0x
File 8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
, line 995Windows fatal exception: code 0x8001010e
in _bootstrap
Windows fatal exception: code 0x8001010e
Thread 0x00000aa4 (most recent call first):
File "Windows fatal exception: C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "code 0xC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "8001010eC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995
in _bootstrap
Thread 0x00005250 (most recent call first):
Windows fatal exception: File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"code 0x, line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"8001010e, line 975 in
run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File Windows fatal exception: "code 0x8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrapWindows fatal exception:
code 0x
Thread 0x00001e18 (most recent call first):
File 8001010e"
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line Windows fatal exception: code 0x8001010e
114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edcWindows fatal exception: code 0x8001010e (most recent call first):
File "
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in Windows fatal exception: code 0x8001010e
_exhaustive_wait
Windows fatal exception: code 0x8001010e
File "Windows fatal exception: code 0x8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py"Windows fatal exception: code 0x8001010e, line
878 in Windows fatal exception: code 0x8001010e
wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: , line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"code 0x8001010e
, line Windows fatal exception: code 0x8001010e
975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: , line 1038 in code 0x8001010e
_bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
Windows fatal exception: code 0x8001010e
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: code 0x, line 114 in 8001010eworker
File
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
, line 975 in Windows fatal exception: code 0x8001010e
run
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x, line 1038 in 8001010e_bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
Windows fatal exception: code 0x8001010e
File "Windows fatal exception: code 0x8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: code 0x8001010e
, line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: code 0x8001010e
, line 114 in worker
File Windows fatal exception: "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"code 0x, line 975 in run
File "8001010eC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"
, line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: , line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
code 0x File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"8001010e, line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975
in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: , line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
code 0x File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 9758001010e
in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
, line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
, line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py"Windows fatal exception: code 0x8001010e
, line 416 in get_command
File Windows fatal exception: code 0x8001010e
"C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: code 0x8001010e
, line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x8001010e
, line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py"Windows fatal exception: , line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"code 0x8001010e
Windows fatal exception: code 0x8001010e
, line Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line
1038Windows fatal exception: in code 0x8001010e_bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003df4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000aa4 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00005250 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001e18 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004a5c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000046dc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000030d8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\qtpy\_utils.py", line 193 in _from_kwarg_name_to_kwarg_name_
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\gui.py", line 416 in get_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\clashes\tool.py", line 59 in run_command
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1054 in init
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\site-packages\chimerax\core\__main__.py", line 1217 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004b20 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 579 in _handle_results
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b60 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 531 in _handle_tasks
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00002edc (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 810 in _exhaustive_wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\connection.py", line 878 in wait
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 502 in _wait_for_updates
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 522 in _handle_workers
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000998 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00004c94 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x0000543c (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001f88 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000b48 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001b84 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x000040c8 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00000ce0 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00001784 (most recent call first):
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py", line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
Thread 0x00003a9c (most recent call first):
File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py8001010e"
, line 114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e
, line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: , line 1038 in _bootstrap_innercode 0x
8001010e8001010e
File Windows fatal exception: Windows fatal exception: code 0x8001010e
"Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py8001010e
"code 0x, line 8001010e
Windows fatal exception: Windows fatal exception: code 0x9958001010e in _bootstrap
Thread 0x00003df4 (most recent call first):
Windows fatal exception: File "code 0x8001010ecode 0x
8001010eWindows fatal exception: Windows fatal exception: code 0x8001010e
code 0x8001010e
Windows fatal exception: Windows fatal exception: code 0x8001010e
code 0x8001010eC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py
Windows fatal exception: "Windows fatal exception: code 0xWindows fatal exception: code 0x8001010e
, line Windows fatal exception: code 0x8001010e
code 0xWindows fatal exception: code 0x8001010e
114 in worker
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 975 in run
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 1038 in _bootstrap_inner
File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py", line 995 in _bootstrap
8001010e
8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x
Thread 0x8001010e00000aa4 (most recent call first):
File "Windows fatal exception: code 0xC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py8001010e
"Windows fatal exception: Windows fatal exception: code 0x8001010e
code 0x8001010e
Windows fatal exception: code 0x, line 8001010e
114 in Windows fatal exception: worker
Windows fatal exception: File "C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"code 0x, line code 0x975 in run
8001010e File "8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"Windows fatal exception: code 0x, line 1038
in _bootstrap_inner
File "Windows fatal exception: 8001010ecode 0x8001010e
C:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\threading.py"
, line 995 in _bootstrap
Windows fatal exception: code 0x8001010e
Thread 0x00005250 (most recent call first):
File Windows fatal exception: code 0x8001010e
"Windows fatal exception: code 0x8001010eC:\Program Files\ChimeraX 1.10.dev202503131841\bin\Lib\multiprocessing\pool.py
", line Windows fatal exception: code 0x8001010e
114 in Windows fatal exception: code 0xWindows fatal exception: code 0xworker
File 8001010e
[deleted to fit within ticket limits]
> name frozen Contacts sel
> select clear
> select Contacts
146 atoms, 74 bonds, 130 pseudobonds, 20 residues, 2 models selected
> show sel atoms
> hide sel atoms
> show sel atoms
> select clear
> select /A:2022
19 atoms, 18 bonds, 1 pseudobond, 1 residue, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
325 atoms, 323 bonds, 130 pseudobonds, 20 residues, 2 models selected
> select /A:2022-2023
26 atoms, 25 bonds, 2 pseudobonds, 2 residues, 2 models selected
> select /A:2022-2023
26 atoms, 25 bonds, 2 pseudobonds, 2 residues, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
325 atoms, 323 bonds, 130 pseudobonds, 20 residues, 2 models selected
> select /A:2022-2023
26 atoms, 25 bonds, 2 pseudobonds, 2 residues, 2 models selected
> select /A:2022
19 atoms, 18 bonds, 1 pseudobond, 1 residue, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
325 atoms, 323 bonds, 130 pseudobonds, 20 residues, 2 models selected
> select /A:2022
19 atoms, 18 bonds, 1 pseudobond, 1 residue, 2 models selected
> show sel atoms
[Repeated 1 time(s)]
> hide sel cartoons
> select clear
> select /A:2025
19 atoms, 18 bonds, 2 pseudobonds, 1 residue, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
325 atoms, 323 bonds, 130 pseudobonds, 20 residues, 2 models selected
> select /A:2025
19 atoms, 18 bonds, 2 pseudobonds, 1 residue, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
325 atoms, 323 bonds, 130 pseudobonds, 20 residues, 2 models selected
> close #1.1
> ui tool show Contacts
> contacts sel restrict both intraRes true ignoreHiddenModels true select true
> color #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
130 contacts
atom1 atom2 overlap distance
/A PRO 2058 HD2 /A VAL 2057 CB 1.082 1.618
/A PRO 2058 HD2 /A VAL 2057 CG1 0.984 1.716
/A VAL 2057 HB /A PRO 2058 CD 0.618 2.082
/A VAL 2057 CG1 /A PRO 2058 CD 0.603 2.797
/A VAL 2057 HB /A PRO 2058 HD2 0.482 1.518
/A ILE 2084 HG22 /A ALA 2082 O 0.435 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A ARG 2059 O /A ASN 2080 H 0.258 1.762
/A VAL 2057 CG2 /A GLY 2023 O 0.249 2.871
/A LEU 2041 O /A THR 2085 H 0.230 1.790
/A PRO 2058 HD2 /A VAL 2057 HG13 0.201 1.799
/A LEU 2020 O /A ILE 2060 H 0.195 1.825
/A PRO 2058 HD2 /A VAL 2057 HG12 0.194 1.806
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A LEU 2020 H /A ILE 2060 O 0.170 1.850
/A VAL 2057 O /A ALA 2082 H 0.168 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.156 2.264
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ARG 2059 H /A ASN 2080 O 0.148 1.872
/A ARG 2059 HA /A LEU 2020 O 0.122 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.113 2.307
/A LEU 2020 HD21 /A LEU 2020 C 0.098 2.512
/A ILE 2084 HG13 /A ILE 2084 O 0.085 2.335
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A ILE 2084 CG2 /A ALA 2082 O 0.072 3.048
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A LEU 2022 HD21 /A PRO 2058 HG3 0.053 1.947
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A LEU 2022 HB3 /A PRO 2058 HD3 0.025 1.975
/A LEU 2022 H /A PRO 2058 O 0.018 2.002
/A VAL 2057 HB /A PRO 2058 HD3 0.015 1.985
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A VAL 2057 HG13 /A PRO 2058 CD -0.013 2.713
/A VAL 2057 HG12 /A PRO 2058 CD -0.013 2.713
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A VAL 2057 H /A LEU 2022 O -0.039 2.059
/A VAL 2057 HG23 /A GLY 2023 O -0.045 2.465
/A VAL 2057 HG22 /A GLY 2023 O -0.046 2.466
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2041 H /A THR 2085 O -0.080 2.100
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A GLU 2021 HA /A PRO 2058 O -0.095 2.515
/A LEU 2022 HB3 /A PRO 2058 CD -0.097 2.797
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A THR 2085 N /A LEU 2041 O -0.104 2.749
/A VAL 2081 HA /A VAL 2057 O -0.105 2.525
/A PRO 2058 HA /A ASN 2080 O -0.106 2.526
/A ILE 2084 HA /A LEU 2041 O -0.106 2.526
/A ASN 2080 N /A ARG 2059 O -0.107 2.752
/A PRO 2058 CG /A VAL 2057 CG1 -0.112 3.512
/A VAL 2057 CB /A PRO 2058 HD3 -0.115 2.815
/A ILE 2025 HG22 /A ILE 2025 O -0.117 2.537
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2022 HD21 /A PRO 2058 CG -0.135 2.835
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A LEU 2022 CB /A PRO 2058 HD3 -0.144 2.844
/A ARG 2059 CA /A LEU 2020 O -0.146 3.266
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ILE 2084 CA /A LEU 2041 O -0.164 3.284
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A VAL 2057 N /A LEU 2022 O -0.170 2.815
/A ILE 2060 N /A LEU 2020 O -0.172 2.817
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A PRO 2083 C /A ILE 2084 HG22 -0.176 2.786
/A ASN 2024 OD1 /A ILE 2025 H -0.178 2.198
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A ILE 2060 O /A LEU 2020 N -0.212 2.857
/A ALA 2082 N /A VAL 2057 O -0.214 2.859
/A ARG 2059 N /A ASN 2080 O -0.227 2.872
/A ILE 2025 N /A ASN 2024 OD1 -0.233 2.878
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2079 HA /A ARG 2059 O -0.253 2.673
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A LEU 2022 N /A PRO 2058 O -0.268 2.913
/A ILE 2025 H /A ASN 2024 CG -0.272 2.882
/A ALA 2082 O /A VAL 2081 CG1 -0.274 3.394
/A PRO 2058 HD3 /A LEU 2022 O -0.277 2.697
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A PRO 2058 CD /A LEU 2022 O -0.283 3.403
/A PRO 2058 N /A LEU 2022 O -0.286 3.346
/A GLU 2021 HG3 /A LEU 2020 C -0.291 2.901
/A PRO 2058 HG3 /A LEU 2022 CD2 -0.297 2.997
/A ALA 2082 H /A VAL 2057 C -0.307 2.917
/A LEU 2020 O /A LEU 2020 HD21 -0.308 2.728
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A VAL 2081 HG21 /A ASN 2080 C -0.327 2.937
/A VAL 2081 CA /A VAL 2057 O -0.336 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.337 3.457
/A PRO 2058 O /A GLU 2021 CA -0.342 3.462
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ASN 2080 O /A PRO 2058 CA -0.344 3.464
/A ILE 2060 H /A LEU 2020 C -0.344 2.954
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A PRO 2058 HB2 /A LEU 2022 HB3 -0.354 2.354
/A LEU 2022 HD21 /A PRO 2058 CD -0.357 3.057
/A LEU 2022 HB3 /A PRO 2058 CB -0.361 3.061
/A ASN 2080 H /A ARG 2059 C -0.361 2.971
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A PRO 2058 CG /A VAL 2057 CB -0.369 3.769
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A THR 2085 H /A LEU 2041 C -0.373 2.983
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A LEU 2022 CB /A PRO 2058 CD -0.391 3.791
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A PRO 2058 HG2 /A VAL 2057 O -0.393 2.813
/A GLU 2021 CG /A LEU 2020 O -0.393 3.513
/A LEU 2022 HB3 /A PRO 2058 CG -0.400 3.100
130 contacts
> name frozen Contacts sel
> select clear
> select Contacts
146 atoms, 74 bonds, 130 pseudobonds, 20 residues, 2 models selected
> ui tool show Clashes
> clashes sel restrict both intraRes true ignoreHiddenModels true select true
> color #ff0000 reveal true log true
Allowed overlap: 0.6
H-bond overlap reduction: 0.4
Ignore clashes between atoms separated by 4 bonds or less
Detect intra-residue clashes: True
Detect intra-molecule clashes: True
4 clashes
atom1 atom2 overlap distance
/A PRO 2058 HD2 /A VAL 2057 CB 1.082 1.618
/A VAL 2057 CG1 /A PRO 2058 HD2 0.984 1.716
/A VAL 2057 HB /A PRO 2058 CD 0.618 2.082
/A PRO 2058 CD /A VAL 2057 CG1 0.603 2.797
4 clashes
> swapaa /A: 2058 leu
Using Dunbrack library
/A PRO 2058: phi -137.9, psi 132.6 trans
Applying LEU rotamer (chi angles: 177.6 65.4) to /A LEU 2058
> close #1.1-2
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
320 atoms, 317 bonds, 20 residues, 1 model selected
> select /A:2120-2121
25 atoms, 24 bonds, 2 residues, 1 model selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
320 atoms, 317 bonds, 20 residues, 1 model selected
> select /A:2120-2121
25 atoms, 24 bonds, 2 residues, 1 model selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
320 atoms, 317 bonds, 20 residues, 1 model selected
> ui tool show Contacts
> contacts sel restrict both intraRes true ignoreHiddenModels true select true
> color #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
112 contacts
atom1 atom2 overlap distance
/A ILE 2084 HG22 /A ALA 2082 O 0.435 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A VAL 2081 HG22 /A LEU 2058 CD1 0.269 2.611
/A ARG 2059 O /A ASN 2080 H 0.258 1.762
/A VAL 2057 CG2 /A GLY 2023 O 0.249 2.871
/A LEU 2041 O /A THR 2085 H 0.230 1.790
/A LEU 2020 O /A ILE 2060 H 0.195 1.825
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A LEU 2020 H /A ILE 2060 O 0.170 1.850
/A VAL 2057 O /A ALA 2082 H 0.168 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.156 2.264
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ARG 2059 H /A ASN 2080 O 0.148 1.872
/A ARG 2059 HA /A LEU 2020 O 0.122 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.113 2.307
/A LEU 2020 HD21 /A LEU 2020 C 0.098 2.512
/A ILE 2084 HG13 /A ILE 2084 O 0.085 2.335
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A ILE 2084 CG2 /A ALA 2082 O 0.072 3.048
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A LEU 2022 H /A LEU 2058 O 0.018 2.002
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A LEU 2058 CD1 /A ARG 2059 N 0.002 3.503
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A VAL 2057 H /A LEU 2022 O -0.039 2.059
/A VAL 2057 HG23 /A GLY 2023 O -0.045 2.465
/A VAL 2057 HG22 /A GLY 2023 O -0.046 2.466
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2041 H /A THR 2085 O -0.080 2.100
/A VAL 2081 CG2 /A LEU 2058 CD1 -0.086 3.666
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A LEU 2058 CD1 /A ASN 2080 O -0.095 3.395
/A GLU 2021 HA /A LEU 2058 O -0.095 2.515
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A THR 2085 N /A LEU 2041 O -0.104 2.749
/A VAL 2081 HA /A VAL 2057 O -0.105 2.525
/A LEU 2058 HA /A ASN 2080 O -0.106 2.526
/A ILE 2084 HA /A LEU 2041 O -0.106 2.526
/A ASN 2080 N /A ARG 2059 O -0.107 2.752
/A ILE 2025 HG22 /A ILE 2025 O -0.117 2.537
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A ARG 2059 CA /A LEU 2020 O -0.146 3.266
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ILE 2084 CA /A LEU 2041 O -0.164 3.284
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A LEU 2058 CB /A LEU 2022 HB3 -0.170 3.050
/A VAL 2057 N /A LEU 2022 O -0.170 2.815
/A ILE 2060 N /A LEU 2020 O -0.172 2.817
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A PRO 2083 C /A ILE 2084 HG22 -0.176 2.786
/A ASN 2024 OD1 /A ILE 2025 H -0.178 2.198
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A ILE 2060 O /A LEU 2020 N -0.212 2.857
/A ALA 2082 N /A VAL 2057 O -0.214 2.859
/A ARG 2059 N /A ASN 2080 O -0.227 2.872
/A ILE 2025 N /A ASN 2024 OD1 -0.233 2.878
/A ARG 2059 H /A LEU 2058 CD1 -0.240 3.120
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2079 HA /A ARG 2059 O -0.253 2.673
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A LEU 2022 N /A LEU 2058 O -0.268 2.913
/A ILE 2025 H /A ASN 2024 CG -0.272 2.882
/A ALA 2082 O /A VAL 2081 CG1 -0.274 3.394
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A GLU 2021 HG3 /A LEU 2020 C -0.291 2.901
/A ALA 2082 H /A VAL 2057 C -0.307 2.917
/A LEU 2020 O /A LEU 2020 HD21 -0.308 2.728
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A VAL 2081 HG21 /A ASN 2080 C -0.327 2.937
/A ILE 2079 CG2 /A LEU 2058 CD1 -0.330 3.910
/A LEU 2058 CG /A ILE 2060 HG13 -0.330 3.210
/A VAL 2081 CA /A VAL 2057 O -0.336 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.337 3.457
/A LEU 2058 O /A GLU 2021 CA -0.342 3.462
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ASN 2080 O /A LEU 2058 CA -0.344 3.464
/A ILE 2060 H /A LEU 2020 C -0.344 2.954
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A ASN 2080 H /A ARG 2059 C -0.361 2.971
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A ILE 2079 HG22 /A LEU 2058 CD1 -0.370 3.250
/A THR 2085 H /A LEU 2041 C -0.373 2.983
/A LEU 2058 CD2 /A ILE 2060 HD11 -0.375 3.255
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A GLU 2021 CG /A LEU 2020 O -0.393 3.513
112 contacts
> name frozen Contacts_leu sel
> ui tool show Clashes
> clashes sel restrict both intraRes true ignoreHiddenModels true select true
> color #ff0000 reveal true log true
Allowed overlap: 0.6
H-bond overlap reduction: 0.4
Ignore clashes between atoms separated by 4 bonds or less
Detect intra-residue clashes: True
Detect intra-molecule clashes: True
0 clashes
atom1 atom2 overlap distance
No clashes
> help help:user
> close #1.1-2
> swapaa /A: 2058 pro
Using Dunbrack library
/A LEU 2058: phi -137.9, psi 132.6 trans
Applying PRO rotamer (chi angles: -25.1 36.3) to /A PRO 2058
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
319 atoms, 317 bonds, 20 residues, 1 model selected
> ui tool show Contacts
> contacts sel restrict both intraRes true ignoreHiddenModels true select true
> color #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
119 contacts
atom1 atom2 overlap distance
/A VAL 2057 HB /A PRO 2058 CD 0.804 2.076
/A VAL 2057 CG1 /A PRO 2058 CD 0.792 2.788
/A ILE 2084 HG22 /A ALA 2082 O 0.435 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A ARG 2059 O /A ASN 2080 H 0.258 1.762
/A VAL 2057 CG2 /A GLY 2023 O 0.249 2.871
/A LEU 2041 O /A THR 2085 H 0.230 1.790
/A LEU 2020 O /A ILE 2060 H 0.195 1.825
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A VAL 2057 HG13 /A PRO 2058 CD 0.176 2.704
/A LEU 2020 H /A ILE 2060 O 0.170 1.850
/A VAL 2057 HG12 /A PRO 2058 CD 0.170 2.710
/A VAL 2057 O /A ALA 2082 H 0.168 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.156 2.264
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ARG 2059 H /A ASN 2080 O 0.148 1.872
/A ARG 2059 HA /A LEU 2020 O 0.122 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.113 2.307
/A LEU 2020 HD21 /A LEU 2020 C 0.098 2.512
/A ILE 2084 HG13 /A ILE 2084 O 0.085 2.335
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A VAL 2057 CG1 /A PRO 2058 CG 0.082 3.498
/A LEU 2022 HB3 /A PRO 2058 CD 0.073 2.807
/A ILE 2084 CG2 /A ALA 2082 O 0.072 3.048
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A LEU 2022 HD21 /A PRO 2058 CG 0.035 2.845
/A LEU 2022 H /A PRO 2058 O 0.018 2.002
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A VAL 2057 H /A LEU 2022 O -0.039 2.059
/A VAL 2057 HG23 /A GLY 2023 O -0.045 2.465
/A VAL 2057 HG22 /A GLY 2023 O -0.046 2.466
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2041 H /A THR 2085 O -0.080 2.100
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A GLU 2021 HA /A PRO 2058 O -0.095 2.515
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A PRO 2058 CD /A LEU 2022 O -0.103 3.403
/A THR 2085 N /A LEU 2041 O -0.104 2.749
/A VAL 2081 HA /A VAL 2057 O -0.105 2.525
/A PRO 2058 HA /A ASN 2080 O -0.106 2.526
/A ILE 2084 HA /A LEU 2041 O -0.106 2.526
/A ASN 2080 N /A ARG 2059 O -0.107 2.752
/A ILE 2025 HG22 /A ILE 2025 O -0.117 2.537
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A ARG 2059 CA /A LEU 2020 O -0.146 3.266
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ILE 2084 CA /A LEU 2041 O -0.164 3.284
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A VAL 2057 N /A LEU 2022 O -0.170 2.815
/A ILE 2060 N /A LEU 2020 O -0.172 2.817
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A PRO 2083 C /A ILE 2084 HG22 -0.176 2.786
/A VAL 2057 CB /A PRO 2058 CG -0.176 3.756
/A ASN 2024 OD1 /A ILE 2025 H -0.178 2.198
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A PRO 2058 CB /A LEU 2022 HB3 -0.185 3.065
/A LEU 2022 HD21 /A PRO 2058 CD -0.189 3.069
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A ILE 2060 O /A LEU 2020 N -0.212 2.857
/A ALA 2082 N /A VAL 2057 O -0.214 2.859
/A LEU 2022 CB /A PRO 2058 CD -0.221 3.801
/A ARG 2059 N /A ASN 2080 O -0.227 2.872
/A LEU 2022 HB3 /A PRO 2058 CG -0.229 3.109
/A ILE 2025 N /A ASN 2024 OD1 -0.233 2.878
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2079 HA /A ARG 2059 O -0.253 2.673
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A VAL 2057 HG13 /A PRO 2058 CG -0.266 3.146
/A LEU 2022 N /A PRO 2058 O -0.268 2.913
/A ILE 2025 H /A ASN 2024 CG -0.272 2.882
/A ALA 2082 O /A VAL 2081 CG1 -0.274 3.394
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A VAL 2057 HG12 /A PRO 2058 CG -0.281 3.161
/A GLU 2021 HG3 /A LEU 2020 C -0.291 2.901
/A PRO 2058 N /A LEU 2022 O -0.301 3.346
/A ALA 2082 H /A VAL 2057 C -0.307 2.917
/A LEU 2020 O /A LEU 2020 HD21 -0.308 2.728
/A PRO 2058 CG /A LEU 2022 CD2 -0.312 3.892
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A VAL 2081 HG21 /A ASN 2080 C -0.327 2.937
/A VAL 2081 CA /A VAL 2057 O -0.336 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.337 3.457
/A PRO 2058 O /A GLU 2021 CA -0.342 3.462
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ASN 2080 O /A PRO 2058 CA -0.344 3.464
/A ILE 2060 H /A LEU 2020 C -0.344 2.954
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A ASN 2080 H /A ARG 2059 C -0.361 2.971
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A THR 2085 H /A LEU 2041 C -0.373 2.983
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A GLU 2021 CG /A LEU 2020 O -0.393 3.513
119 contacts
> ui tool show Clashes
> clashes sel restrict both intraRes true ignoreHiddenModels true select true
> color #ff0000 reveal true log true
Allowed overlap: 0.6
H-bond overlap reduction: 0.4
Ignore clashes between atoms separated by 4 bonds or less
Detect intra-residue clashes: True
Detect intra-molecule clashes: True
2 clashes
atom1 atom2 overlap distance
/A VAL 2057 HB /A PRO 2058 CD 0.804 2.076
/A PRO 2058 CD /A VAL 2057 CG1 0.792 2.788
2 clashes
> ui windowfill toggle
> select clear
> ui windowfill toggle
> select /A:2022
19 atoms, 18 bonds, 1 pseudobond, 1 residue, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
319 atoms, 317 bonds, 121 pseudobonds, 20 residues, 3 models selected
> select /A:2022
19 atoms, 18 bonds, 1 pseudobond, 1 residue, 2 models selected
> show sel cartoons
[Repeated 1 time(s)]
> hide sel atoms
> ui windowfill toggle
[Repeated 5 time(s)]
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
319 atoms, 317 bonds, 121 pseudobonds, 20 residues, 3 models selected
> ui windowfill toggle
[Repeated 1 time(s)]
> close #1.1
> ui windowfill toggle
> ui tool show Contacts
> contacts sel restrict both intraRes true ignoreHiddenModels true select true
> color #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
119 contacts
atom1 atom2 overlap distance
/A VAL 2057 HB /A PRO 2058 CD 0.804 2.076
/A VAL 2057 CG1 /A PRO 2058 CD 0.792 2.788
/A ILE 2084 HG22 /A ALA 2082 O 0.435 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A ARG 2059 O /A ASN 2080 H 0.258 1.762
/A VAL 2057 CG2 /A GLY 2023 O 0.249 2.871
/A LEU 2041 O /A THR 2085 H 0.230 1.790
/A LEU 2020 O /A ILE 2060 H 0.195 1.825
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A VAL 2057 HG13 /A PRO 2058 CD 0.176 2.704
/A LEU 2020 H /A ILE 2060 O 0.170 1.850
/A VAL 2057 HG12 /A PRO 2058 CD 0.170 2.710
/A VAL 2057 O /A ALA 2082 H 0.168 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.156 2.264
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ARG 2059 H /A ASN 2080 O 0.148 1.872
/A ARG 2059 HA /A LEU 2020 O 0.122 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.113 2.307
/A LEU 2020 HD21 /A LEU 2020 C 0.098 2.512
/A ILE 2084 HG13 /A ILE 2084 O 0.085 2.335
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A VAL 2057 CG1 /A PRO 2058 CG 0.082 3.498
/A LEU 2022 HB3 /A PRO 2058 CD 0.073 2.807
/A ILE 2084 CG2 /A ALA 2082 O 0.072 3.048
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A LEU 2022 HD21 /A PRO 2058 CG 0.035 2.845
/A LEU 2022 H /A PRO 2058 O 0.018 2.002
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A VAL 2057 H /A LEU 2022 O -0.039 2.059
/A VAL 2057 HG23 /A GLY 2023 O -0.045 2.465
/A VAL 2057 HG22 /A GLY 2023 O -0.046 2.466
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2041 H /A THR 2085 O -0.080 2.100
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A GLU 2021 HA /A PRO 2058 O -0.095 2.515
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A PRO 2058 CD /A LEU 2022 O -0.103 3.403
/A THR 2085 N /A LEU 2041 O -0.104 2.749
/A VAL 2081 HA /A VAL 2057 O -0.105 2.525
/A PRO 2058 HA /A ASN 2080 O -0.106 2.526
/A ILE 2084 HA /A LEU 2041 O -0.106 2.526
/A ASN 2080 N /A ARG 2059 O -0.107 2.752
/A ILE 2025 HG22 /A ILE 2025 O -0.117 2.537
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A ARG 2059 CA /A LEU 2020 O -0.146 3.266
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ILE 2084 CA /A LEU 2041 O -0.164 3.284
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A VAL 2057 N /A LEU 2022 O -0.170 2.815
/A ILE 2060 N /A LEU 2020 O -0.172 2.817
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A PRO 2083 C /A ILE 2084 HG22 -0.176 2.786
/A VAL 2057 CB /A PRO 2058 CG -0.176 3.756
/A ASN 2024 OD1 /A ILE 2025 H -0.178 2.198
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A PRO 2058 CB /A LEU 2022 HB3 -0.185 3.065
/A LEU 2022 HD21 /A PRO 2058 CD -0.189 3.069
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A ILE 2060 O /A LEU 2020 N -0.212 2.857
/A ALA 2082 N /A VAL 2057 O -0.214 2.859
/A LEU 2022 CB /A PRO 2058 CD -0.221 3.801
/A ARG 2059 N /A ASN 2080 O -0.227 2.872
/A LEU 2022 HB3 /A PRO 2058 CG -0.229 3.109
/A ILE 2025 N /A ASN 2024 OD1 -0.233 2.878
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2079 HA /A ARG 2059 O -0.253 2.673
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A VAL 2057 HG13 /A PRO 2058 CG -0.266 3.146
/A LEU 2022 N /A PRO 2058 O -0.268 2.913
/A ILE 2025 H /A ASN 2024 CG -0.272 2.882
/A ALA 2082 O /A VAL 2081 CG1 -0.274 3.394
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A VAL 2057 HG12 /A PRO 2058 CG -0.281 3.161
/A GLU 2021 HG3 /A LEU 2020 C -0.291 2.901
/A PRO 2058 N /A LEU 2022 O -0.301 3.346
/A ALA 2082 H /A VAL 2057 C -0.307 2.917
/A LEU 2020 O /A LEU 2020 HD21 -0.308 2.728
/A PRO 2058 CG /A LEU 2022 CD2 -0.312 3.892
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A VAL 2081 HG21 /A ASN 2080 C -0.327 2.937
/A VAL 2081 CA /A VAL 2057 O -0.336 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.337 3.457
/A PRO 2058 O /A GLU 2021 CA -0.342 3.462
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ASN 2080 O /A PRO 2058 CA -0.344 3.464
/A ILE 2060 H /A LEU 2020 C -0.344 2.954
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A ASN 2080 H /A ARG 2059 C -0.361 2.971
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A THR 2085 H /A LEU 2041 C -0.373 2.983
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A GLU 2021 CG /A LEU 2020 O -0.393 3.513
119 contacts
> ui windowfill toggle
[Repeated 3 time(s)]
> select clear
> ui windowfill toggle
> select /A:2078-2082
74 atoms, 73 bonds, 7 pseudobonds, 5 residues, 2 models selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
319 atoms, 317 bonds, 121 pseudobonds, 20 residues, 3 models selected
> hide sel cartoons
> show sel atoms
> hide sel atoms
> show sel cartoons
[Repeated 1 time(s)]
> hide sel cartoons
[Repeated 1 time(s)]
> show sel cartoons
> ui mousemode right select
Drag select of 272 atoms, 262 residues, 253 bonds, 33 pseudobonds
> hide sel atoms
> show sel cartoons
[Repeated 1 time(s)]
> select clear
> close #1.1-2
> select /A:2058
8 atoms, 8 bonds, 1 residue, 1 model selected
> color sel orange
> select clear
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
319 atoms, 317 bonds, 20 residues, 1 model selected
Drag select of 2 residues
> ui mousemode right translate
> swapaa /A: 2058 leu
Using Dunbrack library
/A PRO 2058: phi -137.9, psi 132.6 trans
Applying LEU rotamer (chi angles: 177.6 65.4) to /A LEU 2058
> select clear
> ui windowfill toggle
[Repeated 1 time(s)]
> save C:/Users/emirm/Desktop/contacts/Contacts.cxs
——— End of log from Tue Jul 29 15:17:34 2025 ———
> view name session-start
opened ChimeraX session
> select /A:2058
9 atoms, 8 bonds, 1 residue, 1 model selected
> color sel red
> select clear
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/ZoomedOut.tif width 1280 height 491
> supersample 3
> ui mousemode right select
Drag select of 262 residues
> show sel surfaces
> transparency (#!1 & sel) 70
> select clear
> save C:/Users/emirm/Desktop/contacts/ZoomedOutSurface.tif width 1280 height
> 491 supersample 3
Drag select of fold_2025_02_26_14_57_hob_native_model_0.cif_A SES surface,
387556 of 3437070 triangles, 262 residues
> hide sel surfaces
> ui tool show "Add Hydrogens"
> addh #!1
Summary of feedback from adding hydrogens to
fold_2025_02_26_14_57_hob_native_model_0.cif #1
---
notes | Termini for fold_2025_02_26_14_57_hob_native_model_0.cif (#1) chain A determined from SEQRES records
Chain-initial residues that are actual N termini: /A MET 1
Chain-initial residues that are not actual N termini:
Chain-final residues that are actual C termini: /A ASP 2300
Chain-final residues that are not actual C termini:
1819 hydrogen bonds
10 hydrogens added
> ui windowfill toggle
> select clear
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 20 residues, 1 model selected
> select /A:2218
24 atoms, 25 bonds, 1 residue, 1 model selected
> select /A:2218
24 atoms, 25 bonds, 1 residue, 1 model selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 20 residues, 1 model selected
> ui tool show Contacts
> contacts sel restrict both intraRes true ignoreHiddenModels true select true
> color #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
134 contacts
atom1 atom2 overlap distance
/A ILE 2084 HG22 /A ALA 2082 O 0.495 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2059 O /A ASN 2080 H 0.318 1.762
/A GLY 2023 O /A VAL 2057 CG2 0.309 2.871
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A LEU 2041 O /A THR 2085 H 0.290 1.790
/A LEU 2020 O /A ILE 2060 H 0.255 1.825
/A LEU 2020 H /A ILE 2060 O 0.230 1.850
/A VAL 2057 O /A ALA 2082 H 0.228 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.216 2.264
/A ARG 2059 H /A ASN 2080 O 0.208 1.872
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A LEU 2020 HD21 /A LEU 2020 C 0.188 2.512
/A ARG 2059 HA /A LEU 2020 O 0.182 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.173 2.307
/A LEU 2058 HD12 /A ASN 2080 O 0.171 2.309
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ILE 2084 HG13 /A ILE 2084 O 0.145 2.335
/A ILE 2084 CG2 /A ALA 2082 O 0.132 3.048
/A VAL 2081 HG22 /A LEU 2058 CD1 0.096 2.604
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A LEU 2022 H /A LEU 2058 O 0.078 2.002
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A LEU 2058 HA /A LEU 2058 HD12 0.053 1.947
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A VAL 2057 H /A LEU 2022 O 0.021 2.059
/A VAL 2057 HG23 /A GLY 2023 O 0.015 2.465
/A VAL 2057 HG22 /A GLY 2023 O 0.014 2.466
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A LEU 2022 HB3 /A LEU 2058 HB2 -0.002 2.002
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A LEU 2041 H /A THR 2085 O -0.020 2.100
/A LEU 2058 HG /A ARG 2059 N -0.021 2.646
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A GLU 2021 HA /A LEU 2058 O -0.035 2.515
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A THR 2085 N /A LEU 2041 O -0.044 2.749
/A VAL 2081 HA /A VAL 2057 O -0.045 2.525
/A LEU 2058 HA /A ASN 2080 O -0.046 2.526
/A ILE 2084 HA /A LEU 2041 O -0.046 2.526
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ASN 2080 N /A ARG 2059 O -0.047 2.752
/A ILE 2025 HG22 /A ILE 2025 O -0.057 2.537
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2058 HD13 /A VAL 2081 HG22 -0.081 2.081
/A PRO 2083 C /A ILE 2084 HG22 -0.086 2.786
/A ARG 2059 CA /A LEU 2020 O -0.086 3.266
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A ILE 2084 CA /A LEU 2041 O -0.104 3.284
/A VAL 2057 N /A LEU 2022 O -0.110 2.815
/A ILE 2060 N /A LEU 2020 O -0.112 2.817
/A ASN 2024 OD1 /A ILE 2025 H -0.118 2.198
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A ILE 2060 O /A LEU 2020 N -0.152 2.857
/A ALA 2082 N /A VAL 2057 O -0.154 2.859
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ARG 2059 N /A ASN 2080 O -0.167 2.872
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A ILE 2025 N /A ASN 2024 OD1 -0.173 2.878
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A LEU 2058 CD1 /A ARG 2059 N -0.181 3.506
/A ILE 2025 H /A ASN 2024 CG -0.182 2.882
/A ILE 2060 HD11 /A LEU 2058 HD21 -0.184 2.184
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A ILE 2079 HA /A ARG 2059 O -0.193 2.673
/A GLU 2021 HG3 /A LEU 2020 C -0.201 2.901
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A LEU 2022 N /A LEU 2058 O -0.208 2.913
/A LEU 2058 CD1 /A ASN 2080 O -0.211 3.391
/A ALA 2082 O /A VAL 2081 CG1 -0.214 3.394
/A LEU 2058 HD12 /A ARG 2059 N -0.216 2.841
/A ALA 2082 H /A VAL 2057 C -0.217 2.917
/A ARG 2059 H /A LEU 2058 HD12 -0.233 2.233
/A VAL 2081 HG21 /A ASN 2080 C -0.237 2.937
/A LEU 2020 O /A LEU 2020 HD21 -0.248 2.728
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2060 H /A LEU 2020 C -0.254 2.954
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A VAL 2081 CG2 /A LEU 2058 CD1 -0.259 3.659
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A LEU 2058 H /A LEU 2022 O -0.267 2.347
/A ASN 2080 H /A ARG 2059 C -0.271 2.971
/A VAL 2081 CA /A VAL 2057 O -0.276 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.277 3.457
/A LEU 2058 HD21 /A ILE 2060 CD1 -0.280 2.980
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A LEU 2058 O /A GLU 2021 CA -0.282 3.462
/A THR 2085 H /A LEU 2041 C -0.283 2.983
/A ASN 2080 O /A LEU 2058 CA -0.284 3.464
/A ILE 2079 HG22 /A LEU 2058 HD11 -0.300 2.300
/A LEU 2058 HB2 /A LEU 2022 CB -0.304 3.004
/A LEU 2020 H /A ILE 2060 C -0.314 3.014
/A ILE 2084 C /A LEU 2041 O -0.315 3.495
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A ILE 2060 HG13 /A ARG 2059 C -0.333 3.033
/A GLU 2021 CG /A LEU 2020 O -0.333 3.513
/A ARG 2059 H /A ASN 2080 C -0.333 3.033
/A ARG 2059 C /A LEU 2020 O -0.340 3.520
/A LEU 2020 CD2 /A LEU 2020 O -0.340 3.520
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A ILE 2084 HG22 /A ALA 2082 C -0.348 3.048
/A LEU 2058 CB /A LEU 2022 HB3 -0.353 3.053
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A ILE 2084 CB /A LEU 2041 O -0.357 3.537
/A THR 2085 O /A LEU 2041 N -0.358 3.063
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A VAL 2057 CB /A GLY 2023 O -0.369 3.549
/A LEU 2022 HG /A ASN 2024 O -0.372 2.852
/A VAL 2057 CG2 /A GLY 2023 C -0.375 3.775
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A LEU 2058 HD11 /A ILE 2079 CG2 -0.378 3.078
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A ILE 2079 CA /A ARG 2059 O -0.394 3.574
/A ASN 2024 O /A LEU 2022 CG -0.396 3.576
134 contacts
> ui windowfill toggle
[Repeated 1 time(s)]
> ui tool show Clashes
> clashes sel restrict both intraRes true ignoreHiddenModels true select true
> color #ff0000 reveal true log true
Allowed overlap: 0.6
H-bond overlap reduction: 0.4
Ignore clashes between atoms separated by 4 bonds or less
Detect intra-residue clashes: True
Detect intra-molecule clashes: True
0 clashes
atom1 atom2 overlap distance
No clashes
> ui windowfill toggle
[Repeated 1 time(s)]
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 134 pseudobonds, 20 residues, 2 models selected
> ui tool show H-Bonds
> hbonds sel color #00ff00 dashes 4 restrict both select true reveal true log
> true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 fold_2025_02_26_14_57_hob_native_model_0.cif
10 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A LEU 2020 N /A ILE 2060 O /A LEU 2020 H 2.857 1.850
/A LEU 2022 N /A LEU 2058 O /A LEU 2022 H 2.913 2.002
/A LEU 2041 N /A THR 2085 O /A LEU 2041 H 3.063 2.100
/A VAL 2057 N /A LEU 2022 O /A VAL 2057 H 2.815 2.059
/A LEU 2058 N /A LEU 2022 O /A LEU 2058 H 3.346 2.347
/A ARG 2059 N /A ASN 2080 O /A ARG 2059 H 2.872 1.872
/A ILE 2060 N /A LEU 2020 O /A ILE 2060 H 2.817 1.825
/A ASN 2080 N /A ARG 2059 O /A ASN 2080 H 2.752 1.762
/A ALA 2082 N /A VAL 2057 O /A ALA 2082 H 2.859 1.852
/A THR 2085 N /A LEU 2041 O /A THR 2085 H 2.749 1.790
10 hydrogen bonds found
> select clear
> hide #1.4 models
> hide #1.3 models
> select subtract #1.3
Nothing selected
> hide #1.2 models
> show #1.2 models
> ui windowfill toggle
> ui mousemode right translate
> save C:/Users/emirm/Desktop/contacts/l2058_con.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> hide #1.2 models
> show #1.3 models
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/l2058_cla.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> hide #1.3 models
> select subtract #1.3
Nothing selected
> show #1.4 models
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/l2058_hb.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/session_L2058.cxs
——— End of log from Wed Jul 30 08:19:51 2025 ———
> view name session-start
opened ChimeraX session
> close #1.2-4
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 20 residues, 1 model selected
> hide sel cartoons
> ui tool show Contacts
> contacts sel saveFile C:/Users/emirm/Desktop/contacts/l2058_con_file
> restrict both intraRes true ignoreHiddenModels true select true color
> #ffffff dashes 4 reveal true log true
Allowed overlap: -0.4
H-bond overlap reduction: 0.4
Ignore contacts between atoms separated by 4 bonds or less
Detect intra-residue contacts: True
Detect intra-molecule contacts: True
134 contacts
atom1 atom2 overlap distance
/A ILE 2084 HG22 /A ALA 2082 O 0.495 1.985
/A ASN 2024 HA /A VAL 2057 HG23 0.336 1.664
/A ILE 2025 HG21 /A VAL 2057 HG12 0.327 1.673
/A ARG 2059 O /A ASN 2080 H 0.318 1.762
/A GLY 2023 O /A VAL 2057 CG2 0.309 2.871
/A ARG 2026 HG3 /A LEU 2041 CD2 0.297 2.403
/A LEU 2041 O /A THR 2085 H 0.290 1.790
/A LEU 2020 O /A ILE 2060 H 0.255 1.825
/A LEU 2020 H /A ILE 2060 O 0.230 1.850
/A VAL 2057 O /A ALA 2082 H 0.228 1.852
/A VAL 2057 HG13 /A VAL 2057 O 0.216 2.264
/A ARG 2059 H /A ASN 2080 O 0.208 1.872
/A VAL 2057 HG12 /A ILE 2025 CG2 0.191 2.509
/A LEU 2020 HD21 /A LEU 2020 C 0.188 2.512
/A ARG 2059 HA /A LEU 2020 O 0.182 2.298
/A VAL 2081 HG11 /A ALA 2082 O 0.173 2.307
/A LEU 2058 HD12 /A ASN 2080 O 0.171 2.309
/A ILE 2084 HD11 /A ILE 2084 HG21 0.156 1.844
/A ILE 2084 HG13 /A ILE 2084 O 0.145 2.335
/A ILE 2084 CG2 /A ALA 2082 O 0.132 3.048
/A VAL 2081 HG22 /A LEU 2058 CD1 0.096 2.604
/A ILE 2025 HG21 /A VAL 2057 CG1 0.083 2.617
/A LEU 2022 H /A LEU 2058 O 0.078 2.002
/A LEU 2041 CD2 /A ARG 2026 CG 0.064 3.336
/A LEU 2058 HA /A LEU 2058 HD12 0.053 1.947
/A ARG 2059 HH11 /A ARG 2059 HD2 0.047 1.953
/A VAL 2057 H /A LEU 2022 O 0.021 2.059
/A VAL 2057 HG23 /A GLY 2023 O 0.015 2.465
/A VAL 2057 HG22 /A GLY 2023 O 0.014 2.466
/A ARG 2026 HG3 /A LEU 2041 HD23 0.013 1.987
/A ARG 2026 HG3 /A LEU 2041 HD22 0.013 1.987
/A LEU 2022 HB3 /A LEU 2058 HB2 -0.002 2.002
/A ARG 2059 HB3 /A ASN 2080 HB3 -0.009 2.009
/A LEU 2041 H /A THR 2085 O -0.020 2.100
/A LEU 2058 HG /A ARG 2059 N -0.021 2.646
/A ASN 2024 HA /A VAL 2057 CG2 -0.023 2.723
/A ILE 2025 HB /A LEU 2022 CD2 -0.023 2.723
/A ILE 2079 HD13 /A ILE 2079 HG21 -0.029 2.029
/A ILE 2025 HD13 /A ILE 2025 HG23 -0.032 2.032
/A GLU 2021 HA /A LEU 2058 O -0.035 2.515
/A ASN 2024 CA /A VAL 2057 HG23 -0.037 2.737
/A THR 2085 N /A LEU 2041 O -0.044 2.749
/A VAL 2081 HA /A VAL 2057 O -0.045 2.525
/A LEU 2058 HA /A ASN 2080 O -0.046 2.526
/A ILE 2084 HA /A LEU 2041 O -0.046 2.526
/A LEU 2022 HD22 /A ILE 2025 HB -0.047 2.047
/A ASN 2080 N /A ARG 2059 O -0.047 2.752
/A ILE 2025 HG22 /A ILE 2025 O -0.057 2.537
/A ILE 2060 HD13 /A ILE 2060 HG21 -0.076 2.076
/A LEU 2058 HD13 /A VAL 2081 HG22 -0.081 2.081
/A PRO 2083 C /A ILE 2084 HG22 -0.086 2.786
/A ARG 2059 CA /A LEU 2020 O -0.086 3.266
/A VAL 2057 HA /A ALA 2082 CB -0.091 2.791
/A GLU 2021 N /A LEU 2020 HD21 -0.097 2.722
/A ILE 2060 HB /A LEU 2020 HB3 -0.100 2.100
/A ILE 2084 CA /A LEU 2041 O -0.104 3.284
/A VAL 2057 N /A LEU 2022 O -0.110 2.815
/A ILE 2060 N /A LEU 2020 O -0.112 2.817
/A ASN 2024 OD1 /A ILE 2025 H -0.118 2.198
/A VAL 2057 CG1 /A ILE 2025 CG2 -0.121 3.521
/A ALA 2082 HB1 /A PRO 2083 CD -0.122 2.822
/A LEU 2041 HD22 /A ARG 2026 CG -0.139 2.839
/A PRO 2083 HD2 /A ALA 2082 HA -0.144 2.144
/A ILE 2060 O /A LEU 2020 N -0.152 2.857
/A ALA 2082 N /A VAL 2057 O -0.154 2.859
/A ALA 2082 HB2 /A VAL 2057 HA -0.156 2.156
/A ILE 2079 HG23 /A VAL 2081 HG21 -0.159 2.159
/A VAL 2081 HG11 /A ALA 2082 N -0.163 2.788
/A ARG 2059 N /A ASN 2080 O -0.167 2.872
/A LEU 2041 HD23 /A ARG 2026 CG -0.169 2.869
/A ILE 2025 N /A ASN 2024 OD1 -0.173 2.878
/A LEU 2022 HD11 /A LEU 2022 HA -0.175 2.175
/A ILE 2079 HG23 /A VAL 2081 CG2 -0.180 2.880
/A LEU 2058 CD1 /A ARG 2059 N -0.181 3.506
/A ILE 2025 H /A ASN 2024 CG -0.182 2.882
/A ILE 2060 HD11 /A LEU 2058 HD21 -0.184 2.184
/A ILE 2079 HG22 /A ILE 2060 HG12 -0.190 2.190
/A ILE 2079 HA /A ARG 2059 O -0.193 2.673
/A GLU 2021 HG3 /A LEU 2020 C -0.201 2.901
/A LEU 2041 HA /A LEU 2041 HD22 -0.205 2.205
/A LEU 2022 N /A LEU 2058 O -0.208 2.913
/A LEU 2058 CD1 /A ASN 2080 O -0.211 3.391
/A ALA 2082 O /A VAL 2081 CG1 -0.214 3.394
/A LEU 2058 HD12 /A ARG 2059 N -0.216 2.841
/A ALA 2082 H /A VAL 2057 C -0.217 2.917
/A ARG 2059 H /A LEU 2058 HD12 -0.233 2.233
/A VAL 2081 HG21 /A ASN 2080 C -0.237 2.937
/A LEU 2020 O /A LEU 2020 HD21 -0.248 2.728
/A PRO 2083 HD3 /A ALA 2082 HB1 -0.251 2.251
/A ILE 2060 H /A LEU 2020 C -0.254 2.954
/A GLU 2021 N /A LEU 2020 CD2 -0.254 3.579
/A ARG 2026 CD /A LEU 2041 CD2 -0.255 3.655
/A VAL 2081 CG2 /A LEU 2058 CD1 -0.259 3.659
/A ARG 2059 HG3 /A GLU 2021 HG2 -0.264 2.264
/A LEU 2058 H /A LEU 2022 O -0.267 2.347
/A ASN 2080 H /A ARG 2059 C -0.271 2.971
/A VAL 2081 CA /A VAL 2057 O -0.276 3.456
/A PRO 2083 O /A ILE 2084 CG2 -0.277 3.457
/A LEU 2058 HD21 /A ILE 2060 CD1 -0.280 2.980
/A ARG 2026 HH11 /A ARG 2026 HD3 -0.280 2.280
/A LEU 2058 O /A GLU 2021 CA -0.282 3.462
/A THR 2085 H /A LEU 2041 C -0.283 2.983
/A ASN 2080 O /A LEU 2058 CA -0.284 3.464
/A ILE 2079 HG22 /A LEU 2058 HD11 -0.300 2.300
/A LEU 2058 HB2 /A LEU 2022 CB -0.304 3.004
/A LEU 2020 H /A ILE 2060 C -0.314 3.014
/A ILE 2084 C /A LEU 2041 O -0.315 3.495
/A ARG 2026 CD /A LEU 2041 HD23 -0.316 3.016
/A ILE 2060 HG13 /A ARG 2059 C -0.333 3.033
/A GLU 2021 CG /A LEU 2020 O -0.333 3.513
/A ARG 2059 H /A ASN 2080 C -0.333 3.033
/A ARG 2059 C /A LEU 2020 O -0.340 3.520
/A LEU 2020 CD2 /A LEU 2020 O -0.340 3.520
/A ARG 2026 NE /A LEU 2041 HD23 -0.343 2.968
/A ILE 2025 HG13 /A ARG 2026 N -0.346 2.971
/A ILE 2084 HG22 /A ALA 2082 C -0.348 3.048
/A LEU 2058 CB /A LEU 2022 HB3 -0.353 3.053
/A VAL 2057 HG21 /A ALA 2042 CB -0.353 3.053
/A ILE 2084 CB /A LEU 2041 O -0.357 3.537
/A THR 2085 O /A LEU 2041 N -0.358 3.063
/A ASN 2080 HB3 /A ARG 2059 CB -0.365 3.065
/A ILE 2060 HG22 /A ILE 2079 HG13 -0.365 2.365
/A LEU 2022 HD22 /A ILE 2025 CB -0.366 3.066
/A LEU 2022 HG /A GLY 2023 N -0.366 2.991
/A ASN 2024 CA /A VAL 2057 CG2 -0.369 3.769
/A VAL 2057 CB /A GLY 2023 O -0.369 3.549
/A LEU 2022 HG /A ASN 2024 O -0.372 2.852
/A VAL 2057 CG2 /A GLY 2023 C -0.375 3.775
/A ARG 2059 HB3 /A ASN 2080 CB -0.377 3.077
/A LEU 2058 HD11 /A ILE 2079 CG2 -0.378 3.078
/A ILE 2084 HG12 /A ILE 2084 H -0.390 2.390
/A THR 2085 HB /A LEU 2041 HB2 -0.392 2.392
/A ILE 2079 CA /A ARG 2059 O -0.394 3.574
/A ASN 2024 O /A LEU 2022 CG -0.396 3.576
134 contacts
> ui tool show Clashes
> clashes sel saveFile C:/Users/emirm/Desktop/contacts/l2058_cla_file restrict
> both intraRes true ignoreHiddenModels true select true color #ff0000 reveal
> true log true
Allowed overlap: 0.6
H-bond overlap reduction: 0.4
Ignore clashes between atoms separated by 4 bonds or less
Detect intra-residue clashes: True
Detect intra-molecule clashes: True
0 clashes
atom1 atom2 overlap distance
No clashes
> hide #1.3 models
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 134 pseudobonds, 20 residues, 2 models selected
> ui tool show H-Bonds
> hbonds sel saveFile C:/Users/emirm/Desktop/contacts/l2058_hbond_file color
> #00ff00 dashes 4 restrict both select true reveal true log true
Finding intermodel H-bonds
Finding intramodel H-bonds
Constraints relaxed by 0.4 angstroms and 20 degrees
Models used:
1 fold_2025_02_26_14_57_hob_native_model_0.cif
10 H-bonds
H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
/A LEU 2020 N /A ILE 2060 O /A LEU 2020 H 2.857 1.850
/A LEU 2022 N /A LEU 2058 O /A LEU 2022 H 2.913 2.002
/A LEU 2041 N /A THR 2085 O /A LEU 2041 H 3.063 2.100
/A VAL 2057 N /A LEU 2022 O /A VAL 2057 H 2.815 2.059
/A LEU 2058 N /A LEU 2022 O /A LEU 2058 H 3.346 2.347
/A ARG 2059 N /A ASN 2080 O /A ARG 2059 H 2.872 1.872
/A ILE 2060 N /A LEU 2020 O /A ILE 2060 H 2.817 1.825
/A ASN 2080 N /A ARG 2059 O /A ASN 2080 H 2.752 1.762
/A ALA 2082 N /A VAL 2057 O /A ALA 2082 H 2.859 1.852
/A THR 2085 N /A LEU 2041 O /A THR 2085 H 2.749 1.790
10 hydrogen bonds found
> hide #1.4 models
> select clear
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/session_L2058.cxs
[Repeated 1 time(s)]
> ui windowfill toggle
[Repeated 1 time(s)]
> save C:/Users/emirm/Desktop/contacts/l2058_con.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> hide #1.2 models
> show #1.3 models
> select subtract #1.3
Nothing selected
> hide #1.3 models
> show #1.3 models
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/l2058_cla.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> hide #1.3 models
> show #1.4 models
> ui windowfill toggle
> save C:/Users/emirm/Desktop/contacts/l2058_hb.tif width 1280 height 491
> supersample 3
> ui windowfill toggle
> hide #1.4 models
> close #1.2-4
> select /A:2058
19 atoms, 18 bonds, 1 residue, 1 model selected
> select /A:2058
19 atoms, 18 bonds, 1 residue, 1 model selected
> color (#!1 & sel) orange red
> color (#!1 & sel) orange
> select /A:2081
16 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:2081
16 atoms, 15 bonds, 1 residue, 1 model selected
> color (#!1 & sel) red
> select /A:2147
22 atoms, 21 bonds, 1 residue, 1 model selected
> select /A:2147
22 atoms, 21 bonds, 1 residue, 1 model selected
> select /A:2020-2026,2041-2042,2057-2060,2079-2085
330 atoms, 327 bonds, 20 residues, 1 model selected
> hide sel atoms
> show sel cartoons
> show sel atoms
[Repeated 1 time(s)]
> hide sel cartoons
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select add /A:2187
354 atoms, 350 bonds, 21 residues, 2 models selected
> select add /A:2186
370 atoms, 365 bonds, 22 residues, 2 models selected
> select add /A:2185
384 atoms, 379 bonds, 23 residues, 2 models selected
> select add /A:2184
400 atoms, 394 bonds, 24 residues, 2 models selected
> select subtract /A:2184
384 atoms, 379 bonds, 23 residues, 2 models selected
> select add /A:2184
400 atoms, 394 bonds, 24 residues, 2 models selected
> select add /A:2183
415 atoms, 408 bonds, 25 residues, 2 models selected
> select add /A:2181
434 atoms, 426 bonds, 26 residues, 2 models selected
> select add /A:2182
448 atoms, 440 bonds, 27 residues, 2 models selected
> show sel atoms
> hide sel atoms
> show sel atoms
> hide sel cartoons
> show sel cartoons
> hide sel atoms
> select subtract /A:2020
429 atoms, 421 bonds, 26 residues, 2 models selected
> select subtract /A:2021
414 atoms, 406 bonds, 25 residues, 2 models selected
> select subtract /A:2022
395 atoms, 387 bonds, 24 residues, 2 models selected
> select subtract /A:2023
388 atoms, 380 bonds, 23 residues, 2 models selected
> select subtract /A:2024
374 atoms, 366 bonds, 22 residues, 2 models selected
> select subtract /A:2025
355 atoms, 347 bonds, 21 residues, 2 models selected
> select subtract /A:2042
345 atoms, 337 bonds, 20 residues, 2 models selected
> select subtract /A:2041
326 atoms, 319 bonds, 19 residues, 2 models selected
> select subtract /A:2026
302 atoms, 296 bonds, 18 residues, 2 models selected
> select add /A:2041
321 atoms, 314 bonds, 19 residues, 2 models selected
> select add /A:2042
331 atoms, 323 bonds, 20 residues, 2 models selected
> select add /A:2040
350 atoms, 341 bonds, 21 residues, 2 models selected
> select /A:2040-2042,2057-2060,2079-2085,2181-2187
350 atoms, 349 bonds, 21 residues, 1 model selected
> select /A:2237
11 atoms, 10 bonds, 1 residue, 1 model selected
> select /A:2040-2042,2057-2060,2079-2085,2181-2187
350 atoms, 349 bonds, 21 residues, 1 model selected
> select /A:2237-2238
28 atoms, 27 bonds, 2 residues, 1 model selected
> select /A:2040-2042,2057-2060,2079-2085,2181-2187
350 atoms, 349 bonds, 21 residues, 1 model selected
> save C:/Users/emirm/Desktop/contacts/session_V2081.cxs
——— End of log from Wed Jul 30 09:34:05 2025 ———
> view name session-start
opened ChimeraX session
OpenGL version: 3.3.0 Core Profile Context 24.3.1.240216
OpenGL renderer: AMD Radeon(TM) Graphics
OpenGL vendor: ATI Technologies Inc.
Python: 3.11.4
Locale: en_US.cp1252
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: windows
Manufacturer: ASUSTeK COMPUTER INC.
Model: Zenbook UX425QA_UM425QA
OS: Microsoft Windows 11 Pro (Build 26100)
Memory: 16,536,301,568
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 9 5900HX with Radeon Graphics
OSLanguage: en-US
Installed Packages:
alabaster: 1.0.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.2.0
babel: 2.17.0
beautifulsoup4: 4.13.3
blockdiag: 3.0.0
blosc2: 3.2.0
build: 1.2.2.post1
certifi: 2025.1.31
cftime: 1.6.4.post1
charset-normalizer: 3.4.1
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.19.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Aniso: 1.1.1
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60.5
ChimeraX-AtomicLibrary: 14.1.13
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.dev202503131841
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.5.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-maskChains: 1.4
ChimeraX-MatchMaker: 2.1.7
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.15
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14.1
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.7
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-ProfileGrids: 1.0.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.44
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
coverage: 7.6.12
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.12
debugpy: 1.8.13
decorator: 5.2.1
docutils: 0.21.2
executing: 2.2.0
filelock: 3.17.0
fonttools: 4.56.0
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h5py: 3.13.0
html2text: 2024.2.26
idna: 3.10
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.0.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.6
joblib: 1.4.2
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.8
line_profiler: 4.2.0
llvmlite: 0.44.0
lxml: 5.3.1
lz4: 4.4.3
MarkupSafe: 3.0.2
matplotlib: 3.10.1
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.1.0
narwhals: 1.30.0
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numba: 0.61.0
numexpr: 2.10.2
numpy: 2.1.3
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 24.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 25.0.1
pkginfo: 1.11.1
platformdirs: 4.3.6
plotly: 6.0.0
pluggy: 1.5.0
prompt_toolkit: 3.0.50
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.32
Pygments: 2.18.0
pyKVFinder: 0.7.3
pynmrstar: 3.3.5
pynndescent: 0.5.13
pynrrd: 1.0.0
PyOpenGL: 3.1.9
PyOpenGL-accelerate: 3.1.9
pyopenxr: 1.1.4501
pyparsing: 3.2.1
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.1
PyQt6-Qt6: 6.8.2
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.2
PyQt6_sip: 13.10.0
pytest: 8.3.5
pytest-cov: 6.0.0
python-dateutil: 2.9.0.post0
pytz: 2025.1
pywin32: 306
pyzmq: 26.3.0
qtconsole: 5.5.2
QtPy: 2.4.3
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
roman-numerals-py: 3.1.0
scikit-learn: 1.6.1
scipy: 1.14.0
setuptools: 75.8.2
sfftk-rw: 0.8.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.1.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.7.1
tables: 3.10.2
tcia_utils: 1.5.1
threadpoolctl: 3.5.0
tifffile: 2024.7.24
tinyarray: 1.2.4
toml: 0.10.2
tornado: 6.4.2
tqdm: 4.67.1
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2025.1
umap-learn: 0.5.7
urllib3: 2.3.0
wcwidth: 0.2.13
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (2)
comment:1 by , 3 months ago
| Cc: | added |
|---|---|
| Component: | Unassigned → UI |
| Description: | modified (diff) |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using open/save dialog |
comment:2 by , 3 months ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
